Query 032506
Match_columns 139
No_of_seqs 329 out of 1267
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 00:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kci_A Putative acyl carrier p 99.8 4E-20 1.4E-24 125.6 8.7 77 60-137 2-79 (87)
2 2l9f_A CALE8, meacp; transfera 99.8 1.4E-19 4.8E-24 126.2 9.4 80 57-138 11-93 (102)
3 2kjs_A Putative acyl carrier p 99.8 3.1E-19 1.1E-23 121.0 9.4 76 61-137 3-79 (87)
4 2ava_A ACP I, acyl carrier pro 99.8 5.2E-19 1.8E-23 116.6 9.8 82 57-138 1-82 (82)
5 3gzm_A Acyl carrier protein; h 99.8 4E-19 1.4E-23 117.3 8.3 78 57-135 2-80 (81)
6 2dnw_A Acyl carrier protein; A 99.8 9.5E-19 3.2E-23 120.0 10.1 86 52-138 7-93 (99)
7 1vku_A Acyl carrier protein; T 99.8 8.5E-19 2.9E-23 121.5 9.7 82 55-137 12-93 (100)
8 2kwl_A ACP, acyl carrier prote 99.8 9.4E-19 3.2E-23 116.0 8.8 79 55-134 4-83 (84)
9 3ejb_A Acyl carrier protein; p 99.8 6.2E-19 2.1E-23 121.2 7.8 79 55-134 17-96 (97)
10 2lol_A ACP, acyl carrier prote 99.8 2E-18 6.9E-23 113.3 9.8 78 56-134 2-80 (81)
11 4dxe_H ACP, acyl carrier prote 99.8 5.9E-19 2E-23 122.5 7.3 79 55-134 21-100 (101)
12 2l4b_A Acyl carrier protein; i 99.8 3.5E-19 1.2E-23 119.3 5.9 81 55-136 3-87 (88)
13 1af8_A Actinorhodin polyketide 99.8 5.2E-19 1.8E-23 117.7 6.3 83 56-138 1-86 (86)
14 2lte_A Specialized acyl carrie 99.6 3E-20 1E-24 129.5 0.0 89 47-136 11-101 (103)
15 1x3o_A Acyl carrier protein; s 99.8 2.7E-18 9.4E-23 112.0 9.1 78 56-134 1-79 (80)
16 1f80_D Acyl carrier protein; t 99.8 7.2E-19 2.5E-23 115.5 6.3 78 55-133 2-80 (81)
17 3ce7_A Specific mitochodrial a 99.8 3.6E-18 1.2E-22 119.6 9.7 81 56-138 15-101 (107)
18 2cnr_A FAS, ACP, acyl carrier 99.8 4.1E-18 1.4E-22 111.8 8.6 79 55-134 2-81 (82)
19 1klp_A ACP, ACPM, meromycolate 99.7 6.9E-18 2.4E-22 118.8 9.9 82 55-137 2-84 (115)
20 2qnw_A Acyl carrier protein; m 99.7 5.8E-18 2E-22 111.8 8.8 78 56-134 3-81 (82)
21 2lki_A Putative uncharacterize 99.7 3.6E-18 1.2E-22 119.4 8.1 86 49-135 13-104 (105)
22 1dv5_A APO-DCP, APO-D-alanyl c 99.7 2.6E-18 9E-23 113.7 6.7 76 57-133 1-79 (80)
23 2kw2_A Specialized acyl carrie 99.7 6.9E-18 2.4E-22 116.5 8.3 79 60-139 3-93 (101)
24 2jq4_A AGR_C_4658P, hypothetic 99.7 5.7E-18 2E-22 118.1 7.9 84 54-138 16-103 (105)
25 2cgq_A Acyl carrier protein AC 99.7 3.4E-18 1.2E-22 121.2 5.9 81 51-138 22-103 (113)
26 1l0i_A Acyl carrier protein; a 99.7 2.7E-17 9.3E-22 107.2 7.6 74 60-134 3-77 (78)
27 2amw_A Hypothetical protein NE 99.7 6.2E-17 2.1E-21 107.3 7.8 74 60-134 2-81 (83)
28 1nq4_A Oxytetracycline polyket 99.7 8.5E-17 2.9E-21 109.9 7.8 78 61-138 5-85 (95)
29 1or5_A Acyl carrier protein; A 99.7 1.1E-17 3.9E-22 110.4 2.8 76 59-134 3-80 (83)
30 2ehs_A ACP, acyl carrier prote 99.7 2E-16 6.8E-21 102.2 8.1 75 60-135 1-76 (77)
31 2l3v_A ACP, acyl carrier prote 99.6 3.4E-17 1.2E-21 106.8 0.9 75 59-134 3-78 (79)
32 1fh1_A NODF, nodulation protei 99.6 1.3E-17 4.3E-22 113.1 -1.4 80 59-138 3-92 (92)
33 2afd_A Protein ASL1650; twiste 99.6 9.7E-15 3.3E-19 96.2 9.4 79 55-134 9-87 (88)
34 2liu_A CURA; holo state, trans 99.6 1.3E-14 4.3E-19 97.7 8.7 83 55-138 16-98 (99)
35 2kr5_A PKS, aflatoxin biosynth 99.5 1.8E-14 6.2E-19 95.6 7.0 76 56-132 7-84 (89)
36 2cg5_B Fatty acid synthase; tr 99.5 1E-13 3.4E-18 94.8 7.8 71 63-134 9-79 (91)
37 2ju1_A Erythronolide synthase; 99.5 6E-14 2E-18 94.2 6.3 76 58-134 18-94 (95)
38 4i4d_A Peptide synthetase NRPS 99.5 1.9E-13 6.4E-18 92.3 8.4 78 57-137 13-90 (93)
39 2l22_A Mupirocin didomain acyl 99.5 1.2E-13 4.1E-18 105.5 7.3 81 54-135 20-100 (212)
40 1dny_A Non-ribosomal peptide s 99.4 4.2E-13 1.4E-17 90.6 8.1 75 56-133 10-84 (91)
41 2l22_A Mupirocin didomain acyl 99.4 2.7E-12 9.3E-17 97.9 10.2 79 57-136 127-205 (212)
42 2cq8_A 10-formyltetrahydrofola 99.2 7.5E-11 2.6E-15 83.1 7.4 78 55-135 20-99 (110)
43 3tej_A Enterobactin synthase c 99.0 9.1E-10 3.1E-14 87.8 8.5 76 55-133 6-81 (329)
44 2jgp_A Tyrocidine synthetase 3 98.8 1.5E-08 5.2E-13 84.7 8.9 77 54-133 4-80 (520)
45 2vsq_A Surfactin synthetase su 98.8 2.1E-08 7.3E-13 93.2 9.0 109 21-133 931-1042(1304)
46 2fq1_A Isochorismatase; ENTB, 98.5 1.2E-07 4.2E-12 75.3 6.2 67 62-131 217-283 (287)
47 4dg8_A PA1221; ANL superfamily 98.5 2E-08 6.7E-13 87.1 -0.1 109 21-133 484-595 (620)
48 4f6l_B AUSA reductase domain p 98.5 2.1E-08 7.3E-13 84.4 0.0 77 54-134 39-115 (508)
49 3rg2_A Enterobactin synthase c 98.4 9.8E-08 3.4E-12 82.1 3.7 109 21-133 505-615 (617)
50 2vz8_A Fatty acid synthase; tr 97.5 1.4E-05 4.7E-10 79.2 0.0 72 61-133 2124-2195(2512)
51 2px6_A Thioesterase domain; th 90.5 0.046 1.6E-06 42.4 -0.2 37 91-127 1-37 (316)
52 1dd4_C 50S ribosomal protein L 83.5 0.88 3E-05 25.9 2.6 20 92-111 13-32 (40)
53 3zen_D Fatty acid synthase; tr 79.5 0.38 1.3E-05 49.2 0.0 54 61-115 1795-1849(3089)
54 1zav_U 50S ribosomal protein L 73.1 2.7 9.2E-05 22.3 2.3 16 94-109 15-30 (30)
55 3ufe_A Transcriptional antiter 48.4 13 0.00045 23.9 2.8 21 97-117 79-99 (111)
56 2pjh_A Protein NPL4, nuclear p 46.2 22 0.00074 22.4 3.5 26 51-77 16-41 (80)
57 3s93_A Tudor domain-containing 46.1 41 0.0014 22.4 5.0 19 56-74 3-21 (102)
58 2hfk_A Pikromycin, type I poly 45.2 0.9 3.1E-05 35.0 -4.0 43 54-109 22-64 (319)
59 2pls_A CBS domain protein; APC 44.6 19 0.00065 22.7 3.0 30 102-131 20-50 (86)
60 1q1v_A DEK protein; winged-hel 44.4 22 0.00074 22.2 3.2 43 56-116 12-55 (70)
61 1v32_A AT5G08430, hypothetical 44.1 16 0.00053 24.6 2.6 57 54-110 33-92 (101)
62 2oai_A Hemolysin; PFAM03471, x 40.8 17 0.0006 23.4 2.4 31 101-131 28-58 (94)
63 3llb_A Uncharacterized protein 37.8 25 0.00087 22.0 2.8 27 102-131 20-46 (83)
64 3lae_A UPF0053 protein HI0107; 36.7 32 0.0011 21.3 3.2 25 102-129 20-44 (81)
65 2rk5_A Putative hemolysin; str 35.3 34 0.0012 21.5 3.1 25 102-129 19-43 (87)
66 3b1l_X E3 ubiquitin-protein li 40.4 8.5 0.00029 23.1 0.0 47 58-104 19-73 (76)
67 2p3h_A Uncharacterized CBS dom 34.1 26 0.0009 23.2 2.5 26 102-130 23-48 (101)
68 3ded_A Probable hemolysin; str 33.2 34 0.0012 22.9 3.0 32 101-132 45-78 (113)
69 3rio_A PTSGHI operon antitermi 32.3 30 0.001 24.9 2.7 21 98-118 148-168 (180)
70 2zjq_5 50S ribosomal protein L 31.9 29 0.00098 24.2 2.4 20 93-112 16-35 (122)
71 2j01_L 50S ribosomal protein L 31.8 29 0.00099 24.3 2.5 20 93-112 16-35 (125)
72 3u5e_m 60S ribosomal protein L 31.7 9.9 0.00034 25.9 0.0 48 57-104 18-73 (128)
73 2pag_A Hypothetical protein; n 31.5 28 0.00096 24.1 2.4 18 98-115 24-41 (135)
74 2pli_A Uncharacterized protein 30.4 36 0.0012 21.6 2.6 27 101-130 28-54 (91)
75 1uhr_A SWI/SNF related, matrix 30.1 20 0.00069 23.4 1.3 57 53-109 24-83 (93)
76 2p13_A CBS domain; alpha-beta 29.8 38 0.0013 21.4 2.7 29 101-130 25-53 (90)
77 2r2z_A Hemolysin; APC85144, en 29.4 38 0.0013 21.5 2.6 27 101-130 26-52 (93)
78 1v31_A Hypothetical protein RA 28.9 16 0.00055 23.9 0.7 57 53-109 24-83 (93)
79 3u5c_f 40S ribosomal protein S 28.1 12 0.00042 26.6 0.0 49 57-105 18-74 (152)
80 2ftc_E L12MT, MRP-L12, 39S rib 27.8 38 0.0013 24.0 2.5 18 94-111 15-32 (137)
81 2dzi_A Ubiquitin-like protein 27.8 41 0.0014 20.0 2.5 36 58-93 26-69 (81)
82 3a9j_A Ubiquitin; protein comp 27.7 36 0.0012 19.9 2.1 36 58-93 19-62 (76)
83 2kd0_A LRR repeats and ubiquit 27.4 47 0.0016 20.6 2.8 36 58-93 30-73 (85)
84 2p4p_A Hypothetical protein HD 27.3 38 0.0013 21.2 2.3 27 102-130 20-47 (86)
85 2bnk_A Early protein GP16.7; D 26.9 88 0.003 19.1 3.7 33 102-134 13-50 (67)
86 1wot_A Putative minimal nucleo 26.4 1.3E+02 0.0043 19.1 5.6 61 54-115 2-78 (98)
87 1wf9_A NPL4 family protein; be 26.2 64 0.0022 21.0 3.4 27 52-78 20-46 (107)
88 1dd3_A 50S ribosomal protein L 25.8 29 0.00099 24.4 1.6 20 92-111 13-32 (128)
89 3m20_A 4-oxalocrotonate tautom 25.3 77 0.0026 18.3 3.3 22 57-78 14-35 (62)
90 3n3k_B Ubiquitin; hydrolase, p 24.0 45 0.0015 20.0 2.1 38 57-94 21-66 (85)
91 1ndd_A NEDD8, protein (ubiquit 23.9 52 0.0018 19.1 2.4 36 58-93 19-62 (76)
92 1otf_A 4-oxalocrotonate tautom 23.3 63 0.0022 18.1 2.6 23 56-78 14-36 (62)
93 3d5p_A Putative glucan synthes 23.1 48 0.0016 22.7 2.3 18 98-115 17-34 (144)
94 2opa_A Probable tautomerase YW 23.1 65 0.0022 18.0 2.6 23 56-78 14-36 (61)
95 2bwf_A Ubiquitin-like protein 22.4 54 0.0018 19.3 2.2 36 58-93 22-65 (77)
96 2icg_A LIN2918 protein; hypoth 22.0 52 0.0018 22.7 2.4 43 59-115 4-46 (160)
97 2prv_A Uncharacterized protein 21.8 52 0.0018 22.7 2.3 18 98-115 26-43 (153)
98 2faz_A Ubiquitin-like containi 21.0 60 0.0021 19.2 2.3 36 58-93 23-66 (78)
99 1yx5_B Ubiquitin; proteasome, 20.8 55 0.0019 20.6 2.1 37 58-94 19-63 (98)
100 2kk8_A Uncharacterized protein 20.7 37 0.0013 21.2 1.2 35 58-92 29-72 (84)
101 1sif_A Ubiquitin; hydrophobic 20.2 59 0.002 20.1 2.2 36 58-93 28-71 (88)
102 1d0q_A DNA primase; zinc-bindi 20.0 55 0.0019 21.3 2.0 21 97-117 82-102 (103)
103 2jve_A PROD1; LY-6, three-fing 20.0 35 0.0012 21.7 1.0 25 110-134 48-72 (91)
No 1
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=99.82 E-value=4e-20 Score=125.61 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhhh
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIETK 137 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~k 137 (139)
+++++|+++++++++++++ +++++++|. ++|||||+.++|+++||++|||+||++++.++.||+++++||.++.+.|
T Consensus 2 ~i~ekv~~il~e~l~~d~~-~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i~~ed~~~~~Tv~dlv~~I~~~~~~~ 79 (87)
T 2kci_A 2 PTLDALTPIFRQVFDDDSI-VLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARK 79 (87)
T ss_dssp CSHHHHHHHHHHHTTCSCC-CCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHH-HCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999885 999999998 6999999999999999999999999999999999999999999988765
No 2
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=99.81 E-value=1.4e-19 Score=126.23 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccC--CCHHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTI--STVQDAADLIEKL 133 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~--~TV~dl~~~I~~~ 133 (139)
+..+|+++|++++.++++++++ .|+++++|. |||+|||+++||++.+|++||+++|++ ..++ .||+++++||.++
T Consensus 11 ~~~~I~~~V~~ilaE~lev~~e-~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~-~e~~~~~TV~d~vdyI~~~ 88 (102)
T 2l9f_A 11 AATGALELVRHLVAERAELPVE-VLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAM-PTNFATATVREMAEALEAR 88 (102)
T ss_dssp SSCCHHHHHHHHHHHHTTSCSS-SCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSS-CSCCTTCBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHH-HcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCcc-HHHHHHccHHHHHHHHHHh
Confidence 3468999999999999999996 999999998 999999999999999999999999887 6667 9999999999999
Q ss_pred Hhhhc
Q 032506 134 IETKS 138 (139)
Q Consensus 134 ~~~k~ 138 (139)
.+.++
T Consensus 89 ~~~~~ 93 (102)
T 2l9f_A 89 EREAP 93 (102)
T ss_dssp HHTCC
T ss_pred hcccc
Confidence 87664
No 3
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=99.80 E-value=3.1e-19 Score=120.99 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCccc-cCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhhh
Q 032506 61 TVDKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIETK 137 (139)
Q Consensus 61 i~~~V~~Il~e~l~i~~~~~I~~dt~l~d-LGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~k 137 (139)
++++|++|+++++++++. .|+++++|.| +|||||+.++|+..||++|||+||.+++.++.||+++++||.+++++|
T Consensus 3 tle~l~~I~~e~l~~d~~-~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I~~kl~~k 79 (87)
T 2kjs_A 3 TLDALTPIFRQVFDDDSI-VLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARK 79 (87)
T ss_dssp SHHHHHHHHHHHHTCSSC-CCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcc-ccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 578999999999999985 9999999985 899999999999999999999999999999999999999999999876
No 4
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=99.79 E-value=5.2e-19 Score=116.56 Aligned_cols=82 Identities=67% Similarity=0.914 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhh
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIET 136 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 136 (139)
+++++.++|++++++.++++++.+++++++|.+||+|||++++++..||++||+++|.+++.++.||+++++||.+++++
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~ 80 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLEK 80 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHHhc
Confidence 46789999999999999998633799999999999999999999999999999999999999999999999999999877
Q ss_pred hc
Q 032506 137 KS 138 (139)
Q Consensus 137 k~ 138 (139)
++
T Consensus 81 ~~ 82 (82)
T 2ava_A 81 KA 82 (82)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 5
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=99.79 E-value=4e-19 Score=117.33 Aligned_cols=78 Identities=44% Similarity=0.652 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHh
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIE 135 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 135 (139)
+++++.++|++++++.++++++ +++++++|. +||+|||++++++..||++|||++|++++.++.||+++++||.++++
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~~~-~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~ 80 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVEED-KIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNK 80 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGG-GCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhCcCHH-HCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHhc
Confidence 4689999999999999999885 999999995 99999999999999999999999999999999999999999998764
No 6
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.5e-19 Score=120.03 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=79.7
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 52 RVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 52 ~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
....|+++++.++|++++++.++++++ +|+++++|. |||+|||++++|+..||++|||+|+++++.++.||+++++||
T Consensus 7 ~m~~m~~~~i~~~l~~~l~~~l~~~~~-~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i 85 (99)
T 2dnw_A 7 GMPPLTLEGIQDRVLYVLKLYDKIDPE-KLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 85 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTSCTT-TCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCHh-hCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHH
Confidence 456789999999999999999999875 899999995 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q 032506 131 EKLIETKS 138 (139)
Q Consensus 131 ~~~~~~k~ 138 (139)
.+++++++
T Consensus 86 ~~~~~~~~ 93 (99)
T 2dnw_A 86 ADKKDVYE 93 (99)
T ss_dssp HHHCCSCS
T ss_pred HHHhcccc
Confidence 99876554
No 7
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=99.78 E-value=8.5e-19 Score=121.53 Aligned_cols=82 Identities=29% Similarity=0.514 Sum_probs=77.5
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
-|.++++.++|+++|++.++++++ +|+++++|.+||+|||+.++|++.||++|||+||++++.++.||+++++||.+++
T Consensus 12 ~~~~~~i~~~l~~ila~~l~v~~~-~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~~~ 90 (100)
T 1vku_A 12 HMERKKLIAKFVEIASEKMGKDLE-TVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKL 90 (100)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCCC-SCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHCCCHH-HCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHh
Confidence 578899999999999999999885 9999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q 032506 135 ETK 137 (139)
Q Consensus 135 ~~k 137 (139)
+++
T Consensus 91 ~~~ 93 (100)
T 1vku_A 91 EEI 93 (100)
T ss_dssp HHC
T ss_pred hhh
Confidence 654
No 8
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=99.78 E-value=9.4e-19 Score=115.95 Aligned_cols=79 Identities=35% Similarity=0.471 Sum_probs=74.9
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.|+++++.++|++++++.++++++ +++++++| .+||+|||++++++..||++||+++|++++.++.||+++++||.++
T Consensus 4 ~m~~~~i~~~l~~~i~~~l~~~~~-~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 4 SMDNDEIFSKVRSIISEQLDKKED-EITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84)
T ss_dssp CSTHHHHHHHHHHHHHHHHCCCGG-GCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcc-cCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHH
Confidence 488999999999999999999875 99999999 6999999999999999999999999999999999999999999887
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
+
T Consensus 83 ~ 83 (84)
T 2kwl_A 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 5
No 9
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=99.77 E-value=6.2e-19 Score=121.20 Aligned_cols=79 Identities=42% Similarity=0.589 Sum_probs=73.2
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.++++++.++|+++|++.++++++ +|+++++|. |||+|||+.++|+..||++|||+|+++++.++.||+++++||.++
T Consensus 17 ~~t~~~i~~~l~~iia~~l~~~~~-~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 17 GSHMSTIEERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 95 (97)
T ss_dssp -CCCCCHHHHHHHHHHHHSCCCTT-TSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHCcCHH-HCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 567789999999999999999885 999999995 999999999999999999999999999999999999999999876
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
+
T Consensus 96 ~ 96 (97)
T 3ejb_A 96 Q 96 (97)
T ss_dssp -
T ss_pred c
Confidence 4
No 10
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=99.77 E-value=2e-18 Score=113.30 Aligned_cols=78 Identities=35% Similarity=0.536 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|+++++.++|++++++.++++++ +++++++|. +||+|||+.++++..||++||+++|.+++.++.||++++++|.+++
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~~-~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 80 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDKA-IITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKERQ 80 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCTT-TCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCChh-hCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence 67899999999999999999875 899999995 9999999999999999999999999999999999999999998763
No 11
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=99.77 E-value=5.9e-19 Score=122.55 Aligned_cols=79 Identities=44% Similarity=0.643 Sum_probs=70.4
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.|++.++.++|+++|++.++++++ +|+++++| .|||+|||+.+||+..||++|||+||++++.++.||+++++||.++
T Consensus 21 ~m~~mei~~~l~~iiae~l~~~~~-~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 21 QSNAMENFDKVKDIIVDRLGVDAD-KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSL 99 (101)
T ss_dssp ---CTTHHHHHHHHHHHTTCCCGG-GCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC--
T ss_pred hcCHHHHHHHHHHHHHHHHCcChh-hCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHc
Confidence 566779999999999999999985 99999999 6999999999999999999999999999999999999999999765
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
.
T Consensus 100 ~ 100 (101)
T 4dxe_H 100 E 100 (101)
T ss_dssp -
T ss_pred c
Confidence 3
No 12
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=99.77 E-value=3.5e-19 Score=119.26 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=74.8
Q ss_pred cCChHHHHHHHHHHHHHHh---CCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQL---ALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l---~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
.|+++++.++|++++++.+ +++++ +|+++++| .+||+|||+.++|++.||++|||+|+++++.++.||+++++||
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~~~~~-~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i 81 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLNDEQKQ-ILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYI 81 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCHHHHH-SCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCHh-hCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHH
Confidence 4788999999999999999 77664 89999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 032506 131 EKLIET 136 (139)
Q Consensus 131 ~~~~~~ 136 (139)
.+++++
T Consensus 82 ~~~~~~ 87 (88)
T 2l4b_A 82 ASKSSD 87 (88)
T ss_dssp HHHSSC
T ss_pred HHhhcc
Confidence 987643
No 13
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=99.77 E-value=5.2e-19 Score=117.66 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCC---CCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADT---TVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEK 132 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~---~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 132 (139)
|+++.+.++|++++++.++++++. +++++++|.+||+|||+.++|+..||++||+++|++++.++.||+++++||.+
T Consensus 1 M~~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T 1af8_A 1 MATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLING 80 (86)
T ss_dssp CCCSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHH
Confidence 566778999999999999998631 67899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 032506 133 LIETKS 138 (139)
Q Consensus 133 ~~~~k~ 138 (139)
++++++
T Consensus 81 ~~~~~~ 86 (86)
T 1af8_A 81 ALAEAA 86 (86)
T ss_dssp HHHHHC
T ss_pred HhhccC
Confidence 887653
No 14
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=99.63 E-value=3e-20 Score=129.46 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=81.1
Q ss_pred cCcccccccCCh--HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHH
Q 032506 47 SAPRFRVSCAAK--PETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQ 124 (139)
Q Consensus 47 ~~~r~~~~~~~~--~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~ 124 (139)
|..|++++++++ .++.++|+++|++.++++++ +|+++++|.|||+|||+.+||++.||++|||+||++++.++.||+
T Consensus 11 ~~~~~~~~~~~~M~~ei~~~l~~ila~~l~i~~~-~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~ 89 (103)
T 2lte_A 11 SSGRENLYFQGHMPNDMEDHLLTVLSVASGVPKE-EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVD 89 (103)
Confidence 346888888774 35999999999999999885 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 032506 125 DAADLIEKLIET 136 (139)
Q Consensus 125 dl~~~I~~~~~~ 136 (139)
++++||.+++++
T Consensus 90 ~l~~~I~~~~~~ 101 (103)
T 2lte_A 90 ELFQLVEKHRAA 101 (103)
Confidence 999999988754
No 15
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=99.76 E-value=2.7e-18 Score=111.95 Aligned_cols=78 Identities=42% Similarity=0.718 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|+++++.++|++++++.++++++ +++++++| .++|+|||+.++++..||++||+++|.+++.++.|+++++++|.+++
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~~-~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 79 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEPE-KVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAKL 79 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGG-GCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHH-HCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHc
Confidence 78899999999999999999874 89999999 79999999999999999999999999999999999999999998875
No 16
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=99.76 E-value=7.2e-19 Score=115.48 Aligned_cols=78 Identities=37% Similarity=0.610 Sum_probs=70.4
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.|+++++.++|++++++.++++++ +++++++| .+||+|||+.++++..||++||+++|.+++.++.||++++++|.++
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~~-~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDEA-DVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ 80 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCSS-CCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHH-hCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHhh
Confidence 478899999999999999999875 99999999 6999999999999999999999999999999999999999998764
No 17
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=99.76 E-value=3.6e-18 Score=119.58 Aligned_cols=81 Identities=28% Similarity=0.362 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc------cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKF------AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADL 129 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l------~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~ 129 (139)
++++++.++|+++|++.++ +++ +|+++++| .|||||||++++|++.||++|||+||++++.++.||+++++|
T Consensus 15 ~~~~~i~~~i~~il~e~l~-~~~-~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~ 92 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFLQ-KGE-KVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADF 92 (107)
T ss_dssp TCHHHHHHHHHHHHHTTBC-TTC-CCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-Ccc-ccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHH
Confidence 6789999999999999999 664 99999999 589999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 032506 130 IEKLIETKS 138 (139)
Q Consensus 130 I~~~~~~k~ 138 (139)
|.++.++.+
T Consensus 93 i~~~~~~~~ 101 (107)
T 3ce7_A 93 VVSERAKAG 101 (107)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHHHHH
Confidence 999876543
No 18
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=99.75 E-value=4.1e-18 Score=111.76 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=74.2
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.|+++++.++|++++++.++++++ +++++++|. ++|+|||+.++++..||++||+++|.+++.++.||++++++|.++
T Consensus 2 ~m~~~~i~~~l~~~i~~~l~~~~~-~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2cnr_A 2 AATQEEIVAGLAEIVNEIAGIPVE-DVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDH 80 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCCTT-TCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCHH-HCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHH
Confidence 378999999999999999999875 899999995 999999999999999999999999999999999999999999875
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
+
T Consensus 81 ~ 81 (82)
T 2cnr_A 81 Q 81 (82)
T ss_dssp B
T ss_pred c
Confidence 4
No 19
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=99.75 E-value=6.9e-18 Score=118.78 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=77.0
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.|+++++.++|++++++.++++++ +|+++++|. +||+|||++++|+..||++||++||.+++.++.||+++++||.++
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~~-~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 80 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEPS-EITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKL 80 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCTT-TCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcCHH-hCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHH
Confidence 478999999999999999999885 899999995 999999999999999999999999999999999999999999998
Q ss_pred Hhhh
Q 032506 134 IETK 137 (139)
Q Consensus 134 ~~~k 137 (139)
++++
T Consensus 81 ~~~~ 84 (115)
T 1klp_A 81 EEEN 84 (115)
T ss_dssp HSSC
T ss_pred Hccc
Confidence 7654
No 20
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=99.75 E-value=5.8e-18 Score=111.77 Aligned_cols=78 Identities=42% Similarity=0.626 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
.+++++.++|++++++.++++++ +++++++| .+||+|||+++++++.||++||+++|++++.++.||+++++||.+++
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~~~~-~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGVDRA-RINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKAK 81 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCCCGG-GCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCCCHh-hCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHhc
Confidence 36789999999999999999875 89999999 59999999999999999999999999999999999999999998764
No 21
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=99.75 E-value=3.6e-18 Score=119.40 Aligned_cols=86 Identities=27% Similarity=0.367 Sum_probs=70.1
Q ss_pred cccccccCChHHHHHHHHHHHHHHhCCC--CCCCCCCCCCcc-ccCC-ChHHHHHHHHHHHHHhCCccChhh--hccCCC
Q 032506 49 PRFRVSCAAKPETVDKVCQIVKKQLALP--ADTTVTGESKFA-ALGA-DSLDTVEIVMGLEEEFGISVEEES--AQTIST 122 (139)
Q Consensus 49 ~r~~~~~~~~~ei~~~V~~Il~e~l~i~--~~~~I~~dt~l~-dLGl-DSLd~veLv~~LEeeFgI~i~~~~--l~~~~T 122 (139)
.|-++++..+.++.++|+++|++.++++ ++ +|+++++|. |||+ |||++++|++.||++|||+||+++ ..++.|
T Consensus 13 ~~~~~~~~~~m~i~~~i~~il~e~l~~~~~~~-~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~T 91 (105)
T 2lki_A 13 GRENLYFQGHMQHLEAVRNILGDVLNLGERKH-TLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFET 91 (105)
T ss_dssp ----------CCTHHHHHHHHHHHTTCTTGGG-TCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSB
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhCCCcccc-cCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCC
Confidence 4556667777789999999999999988 54 899999998 7998 999999999999999999999999 558999
Q ss_pred HHHHHHHHHHHHh
Q 032506 123 VQDAADLIEKLIE 135 (139)
Q Consensus 123 V~dl~~~I~~~~~ 135 (139)
|+++++||.++++
T Consensus 92 v~~l~~~I~~~~~ 104 (105)
T 2lki_A 92 LGSLALFVEHKLS 104 (105)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 22
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=99.74 E-value=2.6e-18 Score=113.73 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccC-CChHHHHHHHHHHHHHhCCccChhhhc--cCCCHHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFAALG-ADSLDTVEIVMGLEEEFGISVEEESAQ--TISTVQDAADLIEKL 133 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLG-lDSLd~veLv~~LEeeFgI~i~~~~l~--~~~TV~dl~~~I~~~ 133 (139)
+++++.++|++++++.++.++. +++++++|.++| +|||++++|++.||++|||+||++++. ++.||+++++||.++
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~~-~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~~ 79 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDDV-KKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSST-TTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhCCCcc-cCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHHc
Confidence 3578999999999999998764 899999999888 999999999999999999999999986 999999999999864
No 23
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=99.74 E-value=6.9e-18 Score=116.53 Aligned_cols=79 Identities=33% Similarity=0.551 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhh------hccCCC-----HHHHH
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEES------AQTIST-----VQDAA 127 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~------l~~~~T-----V~dl~ 127 (139)
++.++|+++|++.++++++ +|+++++|. |||+|||+.++|++.||++|||+||+++ +.++.| |++++
T Consensus 3 ~i~~~v~~ii~~~l~~~~~-~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~ 81 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPRE-TITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLA 81 (101)
T ss_dssp CHHHHHHHHHHHHHCCCGG-GCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHh-hCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHH
Confidence 6899999999999999885 999999994 9999999999999999999999999987 568888 99999
Q ss_pred HHHHHHHhhhcC
Q 032506 128 DLIEKLIETKSA 139 (139)
Q Consensus 128 ~~I~~~~~~k~a 139 (139)
+||.+++++++|
T Consensus 82 ~~i~~~~~~~~~ 93 (101)
T 2kw2_A 82 ARIDELVAAKGA 93 (101)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHhccchh
Confidence 999999887764
No 24
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=99.74 E-value=5.7e-18 Score=118.06 Aligned_cols=84 Identities=20% Similarity=0.387 Sum_probs=70.4
Q ss_pred ccCChHHHHHHHHHHHHHHhCCC--CCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhc--cCCCHHHHHHH
Q 032506 54 SCAAKPETVDKVCQIVKKQLALP--ADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQ--TISTVQDAADL 129 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~l~i~--~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~--~~~TV~dl~~~ 129 (139)
..++++++.++|+++|++.++.+ . .+|+++++|.|||+|||++++|++.||++|||+||++++. ++.||++++++
T Consensus 16 ~~~~~~~i~~~i~~il~~~l~~~v~~-~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~~ 94 (105)
T 2jq4_A 16 NLYFQGHMNATIREILAKFGQLPTPV-DTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDT 94 (105)
T ss_dssp -------CHHHHHHHHHHTSCCSSCG-GGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCCc-ccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHHH
Confidence 34567899999999999987654 4 3899999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHhhhc
Q 032506 130 IEKLIETKS 138 (139)
Q Consensus 130 I~~~~~~k~ 138 (139)
|..+.++++
T Consensus 95 v~~~~~~~~ 103 (105)
T 2jq4_A 95 VKLILDGKE 103 (105)
T ss_dssp HHHHHHTGG
T ss_pred HHHHhcccc
Confidence 999887664
No 25
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.4e-18 Score=121.17 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=68.8
Q ss_pred cccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHH
Q 032506 51 FRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADL 129 (139)
Q Consensus 51 ~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~ 129 (139)
+....| ++++.++|+++|++.++ |++++.|. |||+|||+.+||++.||++|||+|+++++.++.||+++++|
T Consensus 22 ~~~~~M-~~ei~~~v~~il~e~l~------I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~ 94 (113)
T 2cgq_A 22 YFQGAM-EEAINATIQRILRTDRG------ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTS 94 (113)
T ss_dssp ----CH-HHHHHHHHHHHHTCCSC------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHH
T ss_pred Hhcccc-HHHHHHHHHHHHHHHhC------CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHH
Confidence 333367 88999999999999886 78899994 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 032506 130 IEKLIETKS 138 (139)
Q Consensus 130 I~~~~~~k~ 138 (139)
|.+++++++
T Consensus 95 I~~~l~~~a 103 (113)
T 2cgq_A 95 VAVWFPETA 103 (113)
T ss_dssp HHTTC----
T ss_pred HHHHHhccc
Confidence 998876654
No 26
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=99.71 E-value=2.7e-17 Score=107.15 Aligned_cols=74 Identities=43% Similarity=0.634 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
++.++|++++++.++++++ +++++++|. +||+|||+.++++..||++||+++|.+++.++.||++++++|.++.
T Consensus 3 ~i~~~l~~~~~~~l~~~~~-~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 77 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGHQ 77 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGG-GCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHH-HCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence 6889999999999999875 899999995 9999999999999999999999999999999999999999998753
No 27
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.69 E-value=6.2e-17 Score=107.26 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCCCCCCCcc-ccCC-ChHHHHHHHHHHHHHhCCccChhhhc--cCCCHHHHHHHHHHH
Q 032506 60 ETVDKVCQIVKKQLALP--ADTTVTGESKFA-ALGA-DSLDTVEIVMGLEEEFGISVEEESAQ--TISTVQDAADLIEKL 133 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~--~~~~I~~dt~l~-dLGl-DSLd~veLv~~LEeeFgI~i~~~~l~--~~~TV~dl~~~I~~~ 133 (139)
++.++|++++++.++++ ++ +++++++|. |||+ |||+++++++.||++|||+||++++. ++.||+++++||.++
T Consensus 2 ~i~~~l~~il~~~l~~~~~~~-~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~~l~~~i~~~ 80 (83)
T 2amw_A 2 QHLEAVRNILGDVLNLGERKH-TLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHK 80 (83)
T ss_dssp CTHHHHHHHHHHHTTCGGGGG-SCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCccc-cCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHHHHHHHHHHH
Confidence 47889999999999988 54 899999998 8998 99999999999999999999999965 499999999999987
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
+
T Consensus 81 ~ 81 (83)
T 2amw_A 81 L 81 (83)
T ss_dssp H
T ss_pred h
Confidence 6
No 28
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=99.68 E-value=8.5e-17 Score=109.90 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhCCCCC---CCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhhh
Q 032506 61 TVDKVCQIVKKQLALPAD---TTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIETK 137 (139)
Q Consensus 61 i~~~V~~Il~e~l~i~~~---~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~k 137 (139)
+.++|+++|.+.++.+.+ .+|+++++|.+||+|||+.++|+..||++|||+||++++.++.||+++++||.+++.++
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~~~ 84 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLTGA 84 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 467788888888887642 26999999999999999999999999999999999999999999999999999887655
Q ss_pred c
Q 032506 138 S 138 (139)
Q Consensus 138 ~ 138 (139)
+
T Consensus 85 ~ 85 (95)
T 1nq4_A 85 S 85 (95)
T ss_dssp S
T ss_pred C
Confidence 4
No 29
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=99.68 E-value=1.1e-17 Score=110.43 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCC--CCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 59 PETVDKVCQIVKKQLALPADTTVT--GESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~--~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
+.+.++|++++++.++++++.+++ ++++|.+||+|||+.++++..||++||+++|.+++.++.||+++++||.+++
T Consensus 3 ~~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 80 (83)
T 1or5_A 3 ALTVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 80 (83)
T ss_dssp CSCHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHHHh
Confidence 457899999999999998633788 9999999999999999999999999999999999999999999999997654
No 30
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=99.67 E-value=2e-16 Score=102.15 Aligned_cols=75 Identities=40% Similarity=0.682 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHh
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIE 135 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 135 (139)
++.++|++++++.++++++ +++++++| .++|+|||++++++..||++||+++|.+++.++.|+++++++|.++.+
T Consensus 1 ~i~~~l~~~~~~~l~~~~~-~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~~~ 76 (77)
T 2ehs_A 1 SLEERVKEIIAEQLGVEKE-KITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKVG 76 (77)
T ss_dssp CHHHHHHHHHHHHHCCCGG-GCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhCCChh-hCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 3678999999999999874 89999999 799999999999999999999999999999999999999999987753
No 31
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=99.63 E-value=3.4e-17 Score=106.77 Aligned_cols=75 Identities=48% Similarity=0.729 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
+++.++|++++++.++++++ +++++++| .++|+|||+.++++..||++||+++|.+++.++.|+++++++|.+++
T Consensus 3 ~~i~~~l~~~~~~~l~~~~~-~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 78 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGVDAD-KVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKAS 78 (79)
T ss_dssp THHHHHHHHHHHHHTCCCST-TCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHh-hCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence 37899999999999999875 89999999 79999999999999999999999999999999999999999998764
No 32
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=99.63 E-value=1.3e-17 Score=113.12 Aligned_cols=80 Identities=18% Similarity=0.393 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC-------CCCCCCCCccccCCChHHHHHHHHHHHHHhCCccC---hhhhccCCCHHHHHH
Q 032506 59 PETVDKVCQIVKKQLALPAD-------TTVTGESKFAALGADSLDTVEIVMGLEEEFGISVE---EESAQTISTVQDAAD 128 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~-------~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~---~~~l~~~~TV~dl~~ 128 (139)
+++.++|+++|++.++.+.+ .+++++++|.+||+|||++++|++.||++|||+|| ++++.++.||+++++
T Consensus 3 ~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~ 82 (92)
T 1fh1_A 3 DQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVE 82 (92)
T ss_dssp --CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC-----------------CTTTSTH
T ss_pred hHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHH
Confidence 46788999999999874321 27999999999999999999999999999999999 778889999999999
Q ss_pred HHHHHHhhhc
Q 032506 129 LIEKLIETKS 138 (139)
Q Consensus 129 ~I~~~~~~k~ 138 (139)
||.+++++++
T Consensus 83 ~i~~~~~~~a 92 (92)
T 1fh1_A 83 AVRGLLTKEV 92 (92)
T ss_dssp HHHC------
T ss_pred HHHHHhhccC
Confidence 9998877653
No 33
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=99.58 E-value=9.7e-15 Score=96.19 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=73.8
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
.++.+++.+.|++++++.++++++ +++++++|.++|+|||..+++...|+++||++++..++.+..|+++++++|.+++
T Consensus 9 ~~~~~~~~~~l~~~~~~~l~~~~~-~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~~ 87 (88)
T 2afd_A 9 PASVEDIQSWLIDQFAQQLDVDPD-DIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGELY 87 (88)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCGG-GCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCcCHH-HcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence 456789999999999999999874 8999999999999999999999999999999999999999999999999998764
No 34
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=99.56 E-value=1.3e-14 Score=97.72 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=77.0
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
.++.+++.+.|++++++.++++++ +++++++|.++|+|||..+++...|+++||++++..++....|+++++++|.+++
T Consensus 16 ~~~~~~~~~~l~~~~~~~l~~~~~-~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~~ 94 (99)
T 2liu_A 16 QVNLSEIKQVLKQQLAEALYTEES-EIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQIL 94 (99)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCGG-GCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHCcCHH-HcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence 457789999999999999999874 8999999999999999999999999999999999999999999999999999988
Q ss_pred hhhc
Q 032506 135 ETKS 138 (139)
Q Consensus 135 ~~k~ 138 (139)
..++
T Consensus 95 ~~~~ 98 (99)
T 2liu_A 95 SSQG 98 (99)
T ss_dssp HHHT
T ss_pred hccC
Confidence 7654
No 35
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=99.53 E-value=1.8e-14 Score=95.64 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCh--hhhccCCCHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEE--ESAQTISTVQDAADLIEK 132 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~--~~l~~~~TV~dl~~~I~~ 132 (139)
...+++.+.|++++++.++++++ +++++++|.+||+|||..++++..|+++||++++. .++....|+++++++|.+
T Consensus 7 ~~~~~~~~~l~~~~~~~l~~~~~-~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~ 84 (89)
T 2kr5_A 7 GVSNEKLDAVMRVVSEESGIALE-ELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLG 84 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCGG-GCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHCcCHH-HCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHH
Confidence 35678999999999999999874 89999999999999999999999999999999999 899999999999999975
No 36
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=99.48 E-value=1e-13 Score=94.79 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 63 ~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
+.|++++++++++++..+|+++..|.+||+|||+.|||...||++||+++|..++..+ |++++++++...-
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~~-Ti~~La~~v~~~~ 79 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQL-TLRKLQELSSKAD 79 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHTC-BHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHhC-CHHHHHHHHhccc
Confidence 4688899999999742389999999999999999999999999999999999999875 9999999987543
No 37
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=99.48 E-value=6e-14 Score=94.16 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHhC-CCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 58 KPETVDKVCQIVKKQLA-LPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~-i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
++.+.+.|++++++.++ .+++ +++++++|.++|+|||..+++...|+++||++++..++.+..|+++++++|.+++
T Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~-~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~l 94 (95)
T 2ju1_A 18 TAELVRLVRTSTATVLGHDDPK-AVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAEL 94 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGG-GCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCChh-hCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHHc
Confidence 35688889999999999 5554 8999999999999999999999999999999999999999999999999998765
No 38
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=99.47 E-value=1.9e-13 Score=92.32 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhh
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIET 136 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 136 (139)
..+++.+.|+++++++|+++ +|.++++|+++|.|||..++++..|+++||++++..++....|+++++++|.+....
T Consensus 13 ~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~~~ 89 (93)
T 4i4d_A 13 RRRALERDIAAIWAETLGRD---SVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATLTG 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHccc
Confidence 35688999999999999983 699999999999999999999999999999999999999999999999999987654
Q ss_pred h
Q 032506 137 K 137 (139)
Q Consensus 137 k 137 (139)
.
T Consensus 90 ~ 90 (93)
T 4i4d_A 90 E 90 (93)
T ss_dssp -
T ss_pred c
Confidence 3
No 39
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=99.45 E-value=1.2e-13 Score=105.48 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=74.5
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 54 SCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
..++++++.+.|+++|++.++++++ +|+++.+|.+||+|||..++|+..|+++||++++..++.++.|++++++||.+.
T Consensus 20 ~~~~~~~i~~~l~~~~a~~l~~~~~-~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~l~~~~~~~~~Ti~~la~~l~~~ 98 (212)
T 2l22_A 20 HMVADDECAQFLRQSLAAMLYCEPG-QIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQ 98 (212)
T ss_dssp --CCTTHHHHHHHHHHHHHTTCCTT-SCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCCCCTTHHHHCCBHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCHH-HcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence 3467789999999999999999875 899999999999999999999999999999999999999999999999999876
Q ss_pred Hh
Q 032506 134 IE 135 (139)
Q Consensus 134 ~~ 135 (139)
..
T Consensus 99 ~~ 100 (212)
T 2l22_A 99 LQ 100 (212)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 40
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=99.43 E-value=4.2e-13 Score=90.57 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.+..++.++|.+++++.++++ .++++++|+++|.|||..++++..|+++||++++..++....|++++++++.+.
T Consensus 10 ~p~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~ 84 (91)
T 1dny_A 10 APTNAVESKLAEIWERVLGVS---GIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR 84 (91)
T ss_dssp CCSSHHHHHHHHHHHHHHTCS---SCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence 456789999999999999984 689999999999999999999999999999999999999999999999999754
No 41
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=99.38 E-value=2.7e-12 Score=97.92 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhh
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIET 136 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 136 (139)
.++++.+.|++++++.++++++ +|+++++|.++|+|||..++++..|+++||++++..++.++.||+++++||.++++.
T Consensus 127 ~~~~i~~~l~~~~~~~l~~~~~-~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~~~ 205 (212)
T 2l22_A 127 QRESIQDYLKQSLGELLFLDPG-QLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRVQL 205 (212)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSS-SCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHCCChh-hCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHhcc
Confidence 4578899999999999999875 899999999999999999999999999999999999999999999999999887654
No 42
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=7.5e-11 Score=83.05 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHHHHHHHhC-CCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhC-CccChhhhccCCCHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLA-LPADTTVTGESKFAALGADSLDTVEIVMGLEEEFG-ISVEEESAQTISTVQDAADLIEK 132 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~-i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFg-I~i~~~~l~~~~TV~dl~~~I~~ 132 (139)
..++.++..+|.+|+.++|+ .+ .|..+++|++||.|||.++.|+..|+++|| ++++..++....|+++++++|.+
T Consensus 20 t~~~~~~E~~La~iW~~vL~~~~---~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~ 96 (110)
T 2cq8_A 20 TEAELVTAEAVRSVWQRILPKVL---EVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVR 96 (110)
T ss_dssp CTTHHHHHHHHHHHHHHHCSSCS---CCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhCCCC---CCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 33457799999999999998 53 689999999999999999999999999999 99999999999999999999987
Q ss_pred HHh
Q 032506 133 LIE 135 (139)
Q Consensus 133 ~~~ 135 (139)
.+.
T Consensus 97 ~~~ 99 (110)
T 2cq8_A 97 KLR 99 (110)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 43
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=99.01 E-value=9.1e-10 Score=87.82 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=69.2
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
..+++++.+.|++++++.|+++ .|..+++|++||.|||..++++..|+++||++++..++....|+++++++|...
T Consensus 6 ~~p~~~~e~~l~~~~~~~l~~~---~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~ 81 (329)
T 3tej_A 6 RAPKAGSETIIAAAFSSLLGCD---VQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAE 81 (329)
T ss_dssp CCCCTTHHHHHHHHHHHHHTC----CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhh
Confidence 3456788999999999999986 488999999999999999999999999999999999999999999999999754
No 44
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.80 E-value=1.5e-08 Score=84.70 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=70.8
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 54 SCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+..+..++..+|+++++++|+++ +|..+++|++||.|||..++++..++++||++++..++....|++++++++...
T Consensus 4 ~~~p~~~~e~~l~~iw~~vL~~~---~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~~ 80 (520)
T 2jgp_A 4 YVAPRSVWEARLAQVWEQVLNVP---QVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEET 80 (520)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTCS---CCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC---CCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhh
Confidence 34567889999999999999985 688999999999999999999999999999999999999999999999999754
No 45
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.75 E-value=2.1e-08 Score=93.20 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=88.8
Q ss_pred ccceeecccceeeccCCCCC-CccccccC--cccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHH
Q 032506 21 TQGRISSVNSVSLSINGKSF-PSLRMRSA--PRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDT 97 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~ 97 (139)
.|..+.-++.++.+.+||-. ..++ .|. ..-..+...+.++.+.|.+++++.|+++ .|..+++|++||.|||..
T Consensus 931 vP~~~~~l~~lP~t~~GKidR~~L~-~~~~~~~~~~~~~p~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGg~Sl~a 1006 (1304)
T 2vsq_A 931 VPQTFTFLDELPLTTNGKVNKRLLP-KPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRK---QIGIHDDFFALGGHALKA 1006 (1304)
T ss_dssp SCSEEEEESCCCCCSSCSSCCSCCC-CCCGGGGCCCCCCCSSHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHH
T ss_pred hccEEEEecccCCCCCcccCHhhcC-CcchhhhcccccCCCChHHHHHHHHHHHHcCCC---ccCCCCCHHHhCCChHHH
Confidence 56777778888888888763 2222 221 1112344567789999999999999984 688999999999999999
Q ss_pred HHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 98 VEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
++++..|+++||++++..++....|+.+++++|...
T Consensus 1007 ~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~~~~~~ 1042 (1304)
T 2vsq_A 1007 MTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNG 1042 (1304)
T ss_dssp HHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999754
No 46
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=98.53 E-value=1.2e-07 Score=75.32 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHH
Q 032506 62 VDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIE 131 (139)
Q Consensus 62 ~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~ 131 (139)
.+++++.+++.+ ++++ ++.++.+|.++|+||+.++.|+..+++. |++++..++....|++++++++.
T Consensus 217 ~dwlr~~va~~L-~~~~-~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~~~~~~~l~~~ptl~~~~~~l~ 283 (287)
T 2fq1_A 217 KAALREVILPLL-DESD-EPFDDDNLIDYGLDSVRMMALAARWRKV-HGDIDFVMLAKNPTIDAWWKLLS 283 (287)
T ss_dssp HHHHHHHHGGGC-CCSS-CCCTTSCSGGGTCCTTHHHHHHHHHTTT-CTTCCHHHHHTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHh-hcCCCCCHHHhCccHHHHHHHHHHHHHc-CCCCCHHHHHhCccHHHHHHHHH
Confidence 356888899988 7775 8999999999999999999999999998 99999999999999999999997
No 47
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.45 E-value=2e-08 Score=87.09 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=13.0
Q ss_pred ccceeecccceeeccCCCCCC-ccccc-cCcccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHH
Q 032506 21 TQGRISSVNSVSLSINGKSFP-SLRMR-SAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTV 98 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~v 98 (139)
.|.++.-++.++.+.+||-.. .++-+ +. .........+++...|.+++++.|+++ .+..+++|++||.|||..+
T Consensus 484 ~P~~~~~v~~lP~t~~GKidR~~L~~~~~~-~~~~~~~~~~~~e~~l~~iw~~vL~~~---~~~~~d~Ff~lGGdSl~a~ 559 (620)
T 4dg8_A 484 RPHACVRVEALPLTAHGKLDRAALLRRLEE-PLERCASALDPDQRGCAQLWSELLGCE---VGAADQDFFLCGGNSLLAL 559 (620)
T ss_dssp SCSEEEECSSCCCC----CCHHHHHHHTCS-CC-----------------------------------------------
T ss_pred CCcEEEEECcCCCCcccCHhHHHHhhcccc-ccccccCCCCHHHHHHHHHHHHHhCCC---CCCCCCChhhccCcHHHHH
Confidence 566777778888888776532 22100 10 011123345678889999999999985 5788999999999999999
Q ss_pred HHHHHHHH-HhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 99 EIVMGLEE-EFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 99 eLv~~LEe-eFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.|+..|++ .||++++..++....|+.+++++|.+.
T Consensus 560 ~l~~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~ 595 (620)
T 4dg8_A 560 QLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSH 595 (620)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhc
Confidence 99999999 899999999999999999999999764
No 48
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=98.45 E-value=2.1e-08 Score=84.43 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 54 SCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+..+..++...|.+++++.|+++ .|..+++|++||.|||..+.|+..|++ ||++++..++....|+.+++++|.+.
T Consensus 39 ~~~p~~~~e~~l~~~w~~~l~~~---~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~ 114 (508)
T 4f6l_B 39 YSEPSNEIEQTFVDVFGEVLKQN---DVGVDDDFFELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQN 114 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CCCCCCChHHcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhh
Confidence 34567789999999999999985 588999999999999999999999986 99999999999999999999999765
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
.
T Consensus 115 ~ 115 (508)
T 4f6l_B 115 Q 115 (508)
T ss_dssp -
T ss_pred c
Confidence 4
No 49
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.43 E-value=9.8e-08 Score=82.06 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=79.5
Q ss_pred ccceeecccceeeccCCCCCC-ccccccC-cccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHH
Q 032506 21 TQGRISSVNSVSLSINGKSFP-SLRMRSA-PRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTV 98 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~v 98 (139)
.|.++.-++.++.+.+||-.. .++ ++. .+........+...+.+.+++.+.++... ++..+++|++||.|||..+
T Consensus 505 vP~~~~~v~~lP~t~~GKidR~~L~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~d~Ff~lGgdSl~a~ 581 (617)
T 3rg2_A 505 LPDRVECVDSLPLTAVGKVDKKQLR-QWLASRASAGRASIPASKAALREVILPLLDESD--EPFDDDNLIDYGLDSVRMM 581 (617)
T ss_dssp SCSEEEECSCCCBCTTSSBCHHHHH-HHHHHHHHHSSSCCCCSHHHHHHHHGGGSCTTC--CCCTTSCGGGGTCCHHHHH
T ss_pred CCcEEEEecccCCCCCCCCcHHHHH-HHHhcccccccccccccHHHHHHHHHHHhccCC--CCCCCCChhhcCccHHHHH
Confidence 466677778888888776532 221 110 11111112223456788899999887443 6888999999999999999
Q ss_pred HHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 99 EIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 99 eLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+|+..|++ +|++++..++.+..|+.+++++|.+.
T Consensus 582 ~l~~~l~~-~~~~~~~~~~~~~pti~~la~~l~~~ 615 (617)
T 3rg2_A 582 ALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSRE 615 (617)
T ss_dssp HHHHHHHT-TSTTCCHHHHHHSCCHHHHHHHHCC-
T ss_pred HHHHHHHH-hcCCCCHHHHhcCCCHHHHHHHHHhh
Confidence 99999987 79999999999999999999998654
No 50
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.51 E-value=1.4e-05 Score=79.22 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 61 TVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 61 i~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
..+.|.+++++.|++++..+|+++.+|.+||+|||..+||...|+++||++++..++.. .|+..+++++...
T Consensus 2124 ~~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~~~~~ 2195 (2512)
T 2vz8_A 2124 SQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQELSSKT 2195 (2512)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHHHhhc
Confidence 34668899999999874237999999999999999999999999999999999998866 6888888877544
No 51
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens}
Probab=90.50 E-value=0.046 Score=42.38 Aligned_cols=37 Identities=8% Similarity=-0.119 Sum_probs=8.1
Q ss_pred CCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHH
Q 032506 91 GADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAA 127 (139)
Q Consensus 91 GlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~ 127 (139)
|.|||..++++..|+++||++++..++....|+..++
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~ 37 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLM 37 (316)
T ss_dssp -------------------------CCCCCTTSCSEE
T ss_pred CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeE
Confidence 7899999999999999999999999887777765543
No 52
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=83.55 E-value=0.88 Score=25.88 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHHhCCc
Q 032506 92 ADSLDTVEIVMGLEEEFGIS 111 (139)
Q Consensus 92 lDSLd~veLv~~LEeeFgI~ 111 (139)
+.=+...||+-.||++|||+
T Consensus 13 lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 13 LTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp SCHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHCCC
Confidence 34577889999999999997
No 53
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=79.47 E-value=0.38 Score=49.21 Aligned_cols=54 Identities=9% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCcccc-CCChHHHHHHHHHHHHHhCCccChh
Q 032506 61 TVDKVCQIVKKQLALPADTTVTGESKFAAL-GADSLDTVEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 61 i~~~V~~Il~e~l~i~~~~~I~~dt~l~dL-GlDSLd~veLv~~LEeeFgI~i~~~ 115 (139)
..+.|+.+++..++..++ +|.++.++.+| |.+|...-||+..|+.|||..+|+.
T Consensus 1795 a~~~~~~liA~~~k~~~~-~i~~~~~i~~L~gg~St~~nell~dl~~efg~~~p~~ 1849 (3089)
T 3zen_D 1795 AADATVALIALSAKMRID-QIEALDSIESITDGASSRRNQLLVDLGSELNLGAIDG 1849 (3089)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCChh-HCCccccHHHHhCCchHHHHHHHHHHHHHhCCCCCCc
Confidence 466688889989998886 99999999988 9999999999999999999976643
No 54
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=73.13 E-value=2.7 Score=22.34 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhC
Q 032506 94 SLDTVEIVMGLEEEFG 109 (139)
Q Consensus 94 SLd~veLv~~LEeeFg 109 (139)
=+.+.||+-.+|++||
T Consensus 15 vlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 15 VSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4667899999999998
No 55
>3ufe_A Transcriptional antiterminator (BGLG family); extended helix bundle, arcimboldo; 1.50A {Bacillus subtilis} PDB: 3gwh_A
Probab=48.41 E-value=13 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCccChhhh
Q 032506 97 TVEIVMGLEEEFGISVEEESA 117 (139)
Q Consensus 97 ~veLv~~LEeeFgI~i~~~~l 117 (139)
..++...||+.||+++|++++
T Consensus 79 a~~i~~~ie~~~~i~i~~~Ei 99 (111)
T 3ufe_A 79 AWKLIKILQQTLKKPVHEAEA 99 (111)
T ss_dssp HHHHHHHHHHHHCSCCCTHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 346778899999999999886
No 56
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=46.17 E-value=22 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.5
Q ss_pred cccccCChHHHHHHHHHHHHHHhCCCC
Q 032506 51 FRVSCAAKPETVDKVCQIVKKQLALPA 77 (139)
Q Consensus 51 ~~~~~~~~~ei~~~V~~Il~e~l~i~~ 77 (139)
+++.+ +.+.++..+.+.|.+.++++.
T Consensus 16 ~Ri~v-~~~~t~~~L~~~I~~~~~i~~ 41 (80)
T 2pjh_A 16 KRITA-TKRETAATFLKKVAKEFGFQN 41 (80)
T ss_dssp EECCC-CSSCCHHHHHHHHHHHTCCCT
T ss_pred EEEEc-CCcChHHHHHHHHHHHcCCCC
Confidence 34443 345688899999998888764
No 57
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=46.13 E-value=41 Score=22.42 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHHHHHhC
Q 032506 56 AAKPETVDKVCQIVKKQLA 74 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~ 74 (139)
|+++++.+.|+.+|...+-
T Consensus 3 ~~~~~~l~~vkk~irslLi 21 (102)
T 3s93_A 3 SEQERIQECLRKEIRSLLI 21 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhe
Confidence 4678899999999988763
No 58
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Probab=45.19 E-value=0.9 Score=34.97 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=28.5
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhC
Q 032506 54 SCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFG 109 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFg 109 (139)
+..+++++++.|.+|+++.|+++. +++|++| +.++..|.+.|.
T Consensus 22 ~~~P~~~~E~~la~iw~~vL~~~~------~d~Ff~l-------~~l~~~~~~~f~ 64 (319)
T 2hfk_A 22 SGADTGAGAGMFRALFRQAVEDDR------YGEFLDV-------LAEASAFRPQFA 64 (319)
T ss_dssp --------CCHHHHHHHHHHHTTC------HHHHHHH-------HHHHHTTSCEEC
T ss_pred CCCCCCchHHHHHHHHHHHHcCCc------hHHHHHH-------HHHHHHHHHhcC
Confidence 456778899999999999999753 7788888 778887776654
No 59
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=44.57 E-value=19 Score=22.67 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHhCCc-cChhhhccCCCHHHHHHHHH
Q 032506 102 MGLEEEFGIS-VEEESAQTISTVQDAADLIE 131 (139)
Q Consensus 102 ~~LEeeFgI~-i~~~~l~~~~TV~dl~~~I~ 131 (139)
-.+++.||++ +|+++..++.|++.++-...
T Consensus 20 ~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~l 50 (86)
T 2pls_A 20 PELKDTLGLRAVPEEEKGVYHTLSGMIMWLL 50 (86)
T ss_dssp HHHHHHHTCSCCTTTTSCSCCBHHHHHHHHH
T ss_pred HHHHHHhCCCcCCCccCCCcccHHHHHHHHh
Confidence 4578889998 98632235779988765433
No 60
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=44.42 E-value=22 Score=22.23 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHh-CCccChhh
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEF-GISVEEES 116 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeF-gI~i~~~~ 116 (139)
.+.+++.+.|.+||+.. + ++++..=.+...||++| |+++.+..
T Consensus 12 Psd~ei~~~I~~IL~~a---D---------------L~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 12 PTDEELKETIKKLLASA---N---------------LEEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp CCHHHHHHHHHHHHTTS---C---------------GGGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred cCHHHHHHHHHHHHHhC---C---------------HHHHhHHHHHHHHHHHccCCCChHHH
Confidence 45677888888887742 1 23455567899999999 99998543
No 61
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=44.08 E-value=16 Score=24.56 Aligned_cols=57 Identities=12% Similarity=0.252 Sum_probs=45.4
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCC-C-CCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCC
Q 032506 54 SCAAKPETVDKVCQIVKKQLALPA-D-TTVTGESKFA-ALGADSLDTVEIVMGLEEEFGI 110 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~l~i~~-~-~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI 110 (139)
..+++.++...|.++|++.-=.++ + ..|..|..|. =+|-|.+.+.+|...|...|--
T Consensus 33 ~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~ 92 (101)
T 1v32_A 33 EMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKE 92 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCS
T ss_pred cccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCc
Confidence 468999999999999998732222 1 3677888887 5799999999999999988754
No 62
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=40.83 E-value=17 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=16.8
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHHH
Q 032506 101 VMGLEEEFGISVEEESAQTISTVQDAADLIE 131 (139)
Q Consensus 101 v~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~ 131 (139)
+-.+++.||+++|+++-..+.|++.++-...
T Consensus 28 l~dl~~~l~~~l~~~~~~~~dTlgG~i~~~l 58 (94)
T 2oai_A 28 IEELREVLGAELPDGEENNYHTLAGMCISYF 58 (94)
T ss_dssp HHHHHHHHTC-------CCCSBHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcccCCCCccHHHHHHHHh
Confidence 3457888999998632235789988865433
No 63
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=37.81 E-value=25 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHHhCCccChhhhccCCCHHHHHHHHH
Q 032506 102 MGLEEEFGISVEEESAQTISTVQDAADLIE 131 (139)
Q Consensus 102 ~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~ 131 (139)
-.+++.||+++|++ ++.|++.++-...
T Consensus 20 ~dl~~~l~~~l~~~---~~~Tl~G~i~~~l 46 (83)
T 3llb_A 20 DAFNDFFGSEFSDE---EFDTVGGLVMSAF 46 (83)
T ss_dssp HHHHHHHCCCCCTT---TCSBHHHHHHHHH
T ss_pred HHHHHHhCCCCCCC---CCcCHHHHHHHHh
Confidence 46788999999864 4679888765443
No 64
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=36.67 E-value=32 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=18.6
Q ss_pred HHHHHHhCCccChhhhccCCCHHHHHHH
Q 032506 102 MGLEEEFGISVEEESAQTISTVQDAADL 129 (139)
Q Consensus 102 ~~LEeeFgI~i~~~~l~~~~TV~dl~~~ 129 (139)
-.+++.||+++|++ ++.|++.++-.
T Consensus 20 ~dl~~~l~~~l~~~---~~~Tl~G~i~~ 44 (81)
T 3lae_A 20 RDLNKMFNWELDTE---DARTFNGLILE 44 (81)
T ss_dssp HHHHHHHCCCCCCS---SCSBHHHHHHH
T ss_pred HHHHHHhCCCCCCC---CCccHHHHHHH
Confidence 46788999999864 46788887544
No 65
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=35.27 E-value=34 Score=21.53 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHhCCccChhhhccCCCHHHHHHH
Q 032506 102 MGLEEEFGISVEEESAQTISTVQDAADL 129 (139)
Q Consensus 102 ~~LEeeFgI~i~~~~l~~~~TV~dl~~~ 129 (139)
-.+++.||+++|++ ++.|++.++-.
T Consensus 19 ~dl~~~l~~~l~~~---~~dTl~G~v~~ 43 (87)
T 2rk5_A 19 NDFNEYFETDLESD---NVDTIAGFYLT 43 (87)
T ss_dssp HHHHHHHTCCCCCT---TCCBHHHHHHH
T ss_pred HHHHHHhCCCCCCC---CcccHHHHHHH
Confidence 46788899999864 46788887644
No 66
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=40.37 E-value=8.5 Score=23.14 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCCChHHHHHHHHHH
Q 032506 58 KPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGADSLDTVEIVMGL 104 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGlDSLd~veLv~~L 104 (139)
.+.++..+++.|.+..+++++ ..+.++.+|.++|+..-+.+.++..+
T Consensus 19 ~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 19 SDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 456788888888887777653 12455566667776665555555443
No 67
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=34.11 E-value=26 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=19.2
Q ss_pred HHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 102 MGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 102 ~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
-.+++.||+++|++ ++.|++.++-..
T Consensus 23 ~dl~~~lg~~l~~e---~~dTlgGli~~~ 48 (101)
T 2p3h_A 23 DEVERAIGYELPEG---DYETISGLLFDH 48 (101)
T ss_dssp HHHHHHHTSCCCCS---SCCBHHHHHHHH
T ss_pred HHHHHHhCCCCCCC---CCccHHHHHHHH
Confidence 45788899999864 567988876543
No 68
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=33.21 E-value=34 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=22.5
Q ss_pred HHHHHHHhCCc--cChhhhccCCCHHHHHHHHHH
Q 032506 101 VMGLEEEFGIS--VEEESAQTISTVQDAADLIEK 132 (139)
Q Consensus 101 v~~LEeeFgI~--i~~~~l~~~~TV~dl~~~I~~ 132 (139)
+-.+++.||+. +|+++-..+.|++.++-....
T Consensus 45 l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg 78 (113)
T 3ded_A 45 LDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLG 78 (113)
T ss_dssp HHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHC
T ss_pred HHHHHHHhCCCccCCcccCCCCccHHHHHHHHhC
Confidence 35678899999 886433467899988655433
No 69
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix bundle, transcriptional antitermination, transcription; 1.99A {Bacillus subtilis}
Probab=32.27 E-value=30 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCccChhhhc
Q 032506 98 VEIVMGLEEEFGISVEEESAQ 118 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~~l~ 118 (139)
.+++..||+.||+++|++++.
T Consensus 148 ~~~~~~Ie~~~~i~lpedEi~ 168 (180)
T 3rio_A 148 KEVIDMINEKAGLCLPEGEIG 168 (180)
T ss_dssp HHHHHHHHHHHTSCCCTTHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHH
Confidence 467888999999999999863
No 70
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=31.94 E-value=29 Score=24.21 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHhCCcc
Q 032506 93 DSLDTVEIVMGLEEEFGISV 112 (139)
Q Consensus 93 DSLd~veLv~~LEeeFgI~i 112 (139)
.=|...||+-.||++|||+=
T Consensus 16 tllE~~eLv~~lee~fgv~a 35 (122)
T 2zjq_5 16 TIMELADLIDGLKETWGVTA 35 (122)
T ss_pred CHHHHHHHHHHHHHHcCCCC
Confidence 34677899999999999973
No 71
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=31.78 E-value=29 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHhCCcc
Q 032506 93 DSLDTVEIVMGLEEEFGISV 112 (139)
Q Consensus 93 DSLd~veLv~~LEeeFgI~i 112 (139)
.=|...||+-.||++|||+=
T Consensus 16 tllE~~eLv~~lee~fgv~a 35 (125)
T 2j01_L 16 TVLELKQLIDALKEAWGVTA 35 (125)
T ss_pred CHHHHHHHHHHHHHHcCCCc
Confidence 34677899999999999973
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=31.67 E-value=9.9 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCCChHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGADSLDTVEIVMGL 104 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGlDSLd~veLv~~L 104 (139)
+..+++..|++.|.+..+++++ ..+.++.+|.++|+..-+.+.++..+
T Consensus 18 ~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 18 ESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp --------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 3467788888888888777653 23566777888888877777777665
No 73
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=31.51 E-value=28 Score=24.06 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCccChh
Q 032506 98 VEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~ 115 (139)
-+.+..+|+++|+++|.+
T Consensus 24 ~e~I~~~E~~Lgi~fP~d 41 (135)
T 2pag_A 24 EDQLVEIEEQLFINIPFV 41 (135)
T ss_dssp HHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHCCCCCHH
Confidence 578899999999999975
No 74
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=30.42 E-value=36 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 101 VMGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 101 v~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
+-.+++.||+++|++ .+.|++.++-..
T Consensus 28 l~dl~~~l~~~l~~~---~~dTlgG~i~~~ 54 (91)
T 2pli_A 28 IEDINTFFGTEYSSE---EADTIGGLVIQE 54 (91)
T ss_dssp HHHHHHHHCCCCCCS---SCCBHHHHHHHH
T ss_pred HHHHHHHhCCCCCCC---CCccHHHHHHHH
Confidence 345788899999864 467988876543
No 75
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=30.12 E-value=20 Score=23.43 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=44.1
Q ss_pred cccCChHHHHHHHHHHHHHHhCCCCC--CCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC
Q 032506 53 VSCAAKPETVDKVCQIVKKQLALPAD--TTVTGESKFA-ALGADSLDTVEIVMGLEEEFG 109 (139)
Q Consensus 53 ~~~~~~~ei~~~V~~Il~e~l~i~~~--~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFg 109 (139)
...+++.++...|++.|++.-=.++. ..|.-|..|. =+|.|.+.+.+|...|...|-
T Consensus 24 ~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1uhr_A 24 IHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM 83 (93)
T ss_dssp CSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred CCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 45678999999999999986322221 3578899987 579999999999888887764
No 76
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=29.82 E-value=38 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=19.9
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 101 VMGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 101 v~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
+-.+++.||+++|++ -..+.|++.++-..
T Consensus 25 l~dl~~~l~~~l~~~-~~~~~TlgG~i~~~ 53 (90)
T 2p13_A 25 IRKASNLLEHDLVDE-AERYSTLGGYLLWQ 53 (90)
T ss_dssp HHHHHHHHTSCCCCT-TCCCCBHHHHHHHH
T ss_pred HHHHHHHHCCCCCCc-CCCCccHHHHHHHH
Confidence 345788899999863 12577988876543
No 77
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=29.36 E-value=38 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=19.6
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 101 VMGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 101 v~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
+-.+++.||+++|++ .+.|++.++-..
T Consensus 26 l~dl~~~l~~~l~~~---~~~TlgG~i~~~ 52 (93)
T 2r2z_A 26 IDEFNEVFETDLHMS---DVDTMAGYLITA 52 (93)
T ss_dssp HHHHHHHHTCCCCCT---TCCBHHHHHHHH
T ss_pred HHHHHHHhCCCCCCC---CcccHHHHHHHH
Confidence 345788899999864 467998876543
No 78
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=28.90 E-value=16 Score=23.91 Aligned_cols=57 Identities=9% Similarity=0.262 Sum_probs=43.9
Q ss_pred cccCChHHHHHHHHHHHHHHhCCCCC--CCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC
Q 032506 53 VSCAAKPETVDKVCQIVKKQLALPAD--TTVTGESKFA-ALGADSLDTVEIVMGLEEEFG 109 (139)
Q Consensus 53 ~~~~~~~ei~~~V~~Il~e~l~i~~~--~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFg 109 (139)
...+++.++...|++.|++.-=.++. ..|.-|..|. =+|.|++.+.+|...|...|-
T Consensus 24 ~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 24 IEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp CSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCB
T ss_pred CCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 45679999999999999986322321 2477888887 579999999999888887764
No 79
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.12 E-value=12 Score=26.62 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCCChHHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGADSLDTVEIVMGLE 105 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGlDSLd~veLv~~LE 105 (139)
...+++..|++.|.+..+++++ ..+.++.+|.++|+..-+.+.++..+.
T Consensus 18 ~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 18 ESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 3467788888888888777653 235566677788887777777776654
No 80
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=27.79 E-value=38 Score=23.98 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhCCc
Q 032506 94 SLDTVEIVMGLEEEFGIS 111 (139)
Q Consensus 94 SLd~veLv~~LEeeFgI~ 111 (139)
=|...||+-.||++|||+
T Consensus 15 llE~~eLv~~leekfgv~ 32 (137)
T 2ftc_E 15 LLEISDLNELLKKTLKIQ 32 (137)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 467789999999999997
No 81
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.78 E-value=41 Score=20.04 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
.+.++..+++.|.+..+++++. .+.++..|.++|+.
T Consensus 26 ~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~ 69 (81)
T 2dzi_A 26 EDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIG 69 (81)
T ss_dssp SSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCC
T ss_pred CCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCC
Confidence 4567899999999999987641 24555666676653
No 82
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=27.74 E-value=36 Score=19.89 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
.+.++..+++.|.+..+++++. .+.++.+|.++|+.
T Consensus 19 ~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~ 62 (76)
T 3a9j_A 19 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62 (76)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCC
T ss_pred CCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCC
Confidence 4577899999999988887631 24556667777653
No 83
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=27.36 E-value=47 Score=20.62 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
.+.++..|++.|.+..+++++. .+.++..|.++|+.
T Consensus 30 ~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~ 73 (85)
T 2kd0_A 30 PDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVG 73 (85)
T ss_dssp TTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCC
T ss_pred CCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCC
Confidence 4567899999999999988641 24556666677653
No 84
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=27.32 E-value=38 Score=21.21 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=18.6
Q ss_pred HHHHHHhCCc-cChhhhccCCCHHHHHHHH
Q 032506 102 MGLEEEFGIS-VEEESAQTISTVQDAADLI 130 (139)
Q Consensus 102 ~~LEeeFgI~-i~~~~l~~~~TV~dl~~~I 130 (139)
-.+++.||++ +|+++ ++.|++.++-..
T Consensus 20 ~dl~~~l~~~~l~~~~--~~~Tl~G~i~~~ 47 (86)
T 2p4p_A 20 EDVMRALNIHTFPRDE--NYETIGGFMMYM 47 (86)
T ss_dssp HHHHHHTTCCCSCCSC--SSCBHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCC--CCccHHHHHHHH
Confidence 4578889996 87532 467888876443
No 85
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=26.94 E-value=88 Score=19.13 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHHHHhCCccChhhh-----ccCCCHHHHHHHHHHHH
Q 032506 102 MGLEEEFGISVEEESA-----QTISTVQDAADLIEKLI 134 (139)
Q Consensus 102 ~~LEeeFgI~i~~~~l-----~~~~TV~dl~~~I~~~~ 134 (139)
..+=++-||.||.+-+ .++.|-+++.+||+.+-
T Consensus 13 LDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR 50 (67)
T 2bnk_A 13 LDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQR 50 (67)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhH
Confidence 3445677999997644 47899999999998763
No 86
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=26.38 E-value=1.3e+02 Score=19.06 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=35.9
Q ss_pred ccCChHHHHHHHHHHHHHH---hCCCC----C----CCCCCCCCcc---cc--CCChHHHHHHHHHHHHHhCCccChh
Q 032506 54 SCAAKPETVDKVCQIVKKQ---LALPA----D----TTVTGESKFA---AL--GADSLDTVEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 54 ~~~~~~ei~~~V~~Il~e~---l~i~~----~----~~I~~dt~l~---dL--GlDSLd~veLv~~LEeeFgI~i~~~ 115 (139)
+.|.+ ++.+.+++.+.+. +++.. + .+.++++++. .. +.+-.+..++...||+.+|.+++--
T Consensus 2 ~~m~~-~~l~~l~~~i~~l~~~~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~~~~~~~~~~l~~~l~~~l~~~vDlv 78 (98)
T 1wot_A 2 SHMDL-ETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVDIV 78 (98)
T ss_dssp CCCCH-HHHHHHHHHHHHHHHHHTCSSCEECSHHHHTCCCTTCCCEEEECCCSSCCHHHHHHHHHHHHHHSCSCCEEE
T ss_pred CcCCH-HHHHHHHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45777 7777777666543 34321 0 1334444442 12 2455567888999999998876543
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=26.20 E-value=64 Score=20.99 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=19.5
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCCC
Q 032506 52 RVSCAAKPETVDKVCQIVKKQLALPAD 78 (139)
Q Consensus 52 ~~~~~~~~ei~~~V~~Il~e~l~i~~~ 78 (139)
++.+-+...++..|++.|.+.++++++
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~ 46 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIH 46 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcc
Confidence 344332567889999999999988753
No 88
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=25.83 E-value=29 Score=24.38 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHHHHHhCCc
Q 032506 92 ADSLDTVEIVMGLEEEFGIS 111 (139)
Q Consensus 92 lDSLd~veLv~~LEeeFgI~ 111 (139)
+.=|...||+-.||++|||+
T Consensus 13 ltllE~~eLv~~lee~fgv~ 32 (128)
T 1dd3_A 13 LTVSELAELVKKLEDKFGVT 32 (128)
T ss_dssp SCHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 34567889999999999996
No 89
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.27 E-value=77 Score=18.25 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC
Q 032506 57 AKPETVDKVCQIVKKQLALPAD 78 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~ 78 (139)
.+.++.+.|.+.+.+.+|++++
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~ 35 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRS 35 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHhCcCcc
Confidence 3678999999999999999875
No 90
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.99 E-value=45 Score=20.05 Aligned_cols=38 Identities=11% Similarity=0.302 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCCCh
Q 032506 57 AKPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGADS 94 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGlDS 94 (139)
...+++..|++.|.+..+++++ ..+.++.+|.++|+..
T Consensus 21 ~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~ 66 (85)
T 3n3k_B 21 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHN 66 (85)
T ss_dssp CTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCT
T ss_pred CCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCC
Confidence 3467889999999999888763 1355666777777654
No 91
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=23.93 E-value=52 Score=19.13 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
.+.++..+++.|.+..+++++. .+.++.+|.++|+.
T Consensus 19 ~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~ 62 (76)
T 1ndd_A 19 PTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62 (76)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCC
T ss_pred CCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCC
Confidence 4577899999999998887631 24566667777664
No 92
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=23.26 E-value=63 Score=18.12 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCC
Q 032506 56 AAKPETVDKVCQIVKKQLALPAD 78 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~ 78 (139)
..+.++.+.|.+.+.+.++++++
T Consensus 14 e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 14 EQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCcc
Confidence 34678899999999999999874
No 93
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=23.13 E-value=48 Score=22.72 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCccChh
Q 032506 98 VEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~ 115 (139)
-+-+..+|+++|+.+|.+
T Consensus 17 ~~~I~~~E~~lgi~lP~~ 34 (144)
T 3d5p_A 17 SASIDDVEKLLNTTLPKQ 34 (144)
T ss_dssp HHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHhCCCCCHH
Confidence 366788999999999975
No 94
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=23.07 E-value=65 Score=18.05 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCC
Q 032506 56 AAKPETVDKVCQIVKKQLALPAD 78 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~ 78 (139)
..+.++.+.|.+.+.+.+|++++
T Consensus 14 eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 14 EQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCcC
Confidence 34678899999999999999874
No 95
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.38 E-value=54 Score=19.27 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
.+.++..+++.|.+..+++++. .+.++..|.++|+.
T Consensus 22 ~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~ 65 (77)
T 2bwf_A 22 PESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQ 65 (77)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC
T ss_pred CCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCC
Confidence 4567889999999988887631 24556667677653
No 96
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=22.04 E-value=52 Score=22.72 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChh
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~ 115 (139)
.+..++|.+++.+..... ... -+++ -+.+..+|+++|+++|.+
T Consensus 4 ~~~~~~i~~~i~~~~~~~-----~~~-----~~~s----~~~I~~~E~~Lgi~lP~~ 46 (160)
T 2icg_A 4 SSFLEEVDRLITLSGITF-----HAS-----GTGT----PELIKIYQDALGNEFPET 46 (160)
T ss_dssp HHHHHHHHHHHHHCCSCC-----BCC-----CCCC----HHHHHHHHHHHTCCCCHH
T ss_pred hHHHHHHHHHHHHccccc-----ccC-----CCCC----HHHHHHHHHHhCCCCCHH
Confidence 467888888887542211 111 1222 467778899999999975
No 97
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=21.82 E-value=52 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCccChh
Q 032506 98 VEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~ 115 (139)
-+.+..+|+++|+++|.+
T Consensus 26 ee~I~~~E~~Lgi~lP~d 43 (153)
T 2prv_A 26 HENIGRIEENLQCDLPNS 43 (153)
T ss_dssp HHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHCCCCCHH
Confidence 466778899999999975
No 98
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=21.02 E-value=60 Score=19.23 Aligned_cols=36 Identities=3% Similarity=0.110 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
...++..+++.|.+..+++++. .+.++.+|.++|+.
T Consensus 23 ~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~ 66 (78)
T 2faz_A 23 RLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVR 66 (78)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCC
Confidence 4567889999999998987631 24566667777763
No 99
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=20.79 E-value=55 Score=20.61 Aligned_cols=37 Identities=11% Similarity=0.307 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCCh
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGADS 94 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlDS 94 (139)
...++..|++.|.+..+++++. .+.++.+|.++|+..
T Consensus 19 ~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~ 63 (98)
T 1yx5_B 19 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63 (98)
T ss_dssp TTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCT
T ss_pred CCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCC
Confidence 4567899999999999887631 355666777777643
No 100
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.73 E-value=37 Score=21.17 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------C-CCCCCCccccCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------T-VTGESKFAALGA 92 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~-I~~dt~l~dLGl 92 (139)
.++++..|++.|.+..|++++. . +.++.+|.++|+
T Consensus 29 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I 72 (84)
T 2kk8_A 29 YRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQI 72 (84)
T ss_dssp TTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTC
T ss_pred CCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCC
Confidence 4677899999999999987641 1 445555555554
No 101
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=20.18 E-value=59 Score=20.14 Aligned_cols=36 Identities=8% Similarity=0.300 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCccccCCC
Q 032506 58 KPETVDKVCQIVKKQLALPADT--------TVTGESKFAALGAD 93 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~--------~I~~dt~l~dLGlD 93 (139)
.+.++..+++.|.+..+++++. .+.++.+|.++|+.
T Consensus 28 ~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~ 71 (88)
T 1sif_A 28 PSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 71 (88)
T ss_dssp TTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCC
T ss_pred CCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCC
Confidence 4678899999999999987631 24556667777764
No 102
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=20.05 E-value=55 Score=21.34 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCccChhhh
Q 032506 97 TVEIVMGLEEEFGISVEEESA 117 (139)
Q Consensus 97 ~veLv~~LEeeFgI~i~~~~l 117 (139)
..|-+..|.+.+|+++|+.++
T Consensus 82 f~eA~~~La~~~gi~~~~~~~ 102 (103)
T 1d0q_A 82 FVEAAKRLAAKAGVDLSVYEL 102 (103)
T ss_dssp HHHHHHHHHHHHTCCCGGGCC
T ss_pred HHHHHHHHHHHhCCCCCccCC
Confidence 567777888889999987653
No 103
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens}
Probab=20.03 E-value=35 Score=21.70 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.4
Q ss_pred CccChhhhccCCCHHHHHHHHHHHH
Q 032506 110 ISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 110 I~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
+.+|..++.+++||++.++.+++.-
T Consensus 48 vqlpyseiqecktvqqcaevleevt 72 (91)
T 2jve_A 48 VQLPYSEIQECKTVQQCAEVLEEVT 72 (91)
T ss_dssp EECSSSEEEEEECHHHHHHHHHHHH
T ss_pred EECCHHHHHHhHHHHHHHHHHHHHH
Confidence 4678888899999999998887653
Done!