BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032508
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis
Thaliana
Length = 150
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 2/102 (1%)
Query: 2 SRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKV 61
SR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA G +E ++LY K+
Sbjct: 2 SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI 60
Query: 62 DVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 103
+ E + +VGLRNI + ++K E WW+RLLK KP ++KV
Sbjct: 61 -MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101
>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
Length = 125
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 5 PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVN 64
+ KW R D V+I + D++DV + E + K FS G D + +IDL+ +D N
Sbjct: 4 ASAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62
Query: 65 ESKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
+SK R+I ++K E+ + W RL K+ K
Sbjct: 63 DSKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 10 AQRTDRVYITIDLPDAQDVKLKLE 33
A+RTD I++D PD D+ L+LE
Sbjct: 315 ARRTDLRRISLDTPDFTDIVLQLE 338
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 10 AQRTDRVYITIDLPDAQDVKLKLE 33
A+RTD I++D PD D+ L+LE
Sbjct: 323 ARRTDLRRISLDTPDFTDIVLQLE 346
>pdb|1SQH|A Chain A, X-Ray Structure Of Drosophila Malonogaster Protein
Q9vr51 Northeast Structural Genomics Consortium Target
Fr87
Length = 312
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 52 EVD--IDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKP 97
EVD +DLY K G+RN HYL+ + K W R L +A P
Sbjct: 17 EVDELLDLY--------KVKFGIRNFHYLLLYNQRK-WDRQLSEAQIP 55
>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
Length = 684
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 54 DIDLYDKVDVNESKASVGLRNIHYLVKKAENKW---------WSRLLKQAGKPPVFLKV 103
D D+YD+ D N+S S + HY + E W R Q+G P F KV
Sbjct: 28 DFDIYDE-DENQSPRSFQKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKV 85
>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 770
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 54 DIDLYDKVDVNESKASVGLRNIHYLVKKAENKW---------WSRLLKQAGKPPVFLKV 103
D D+YD+ D N+S S + HY + E W R Q+G P F KV
Sbjct: 114 DFDIYDE-DENQSPRSFQKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKV 171
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 55 IDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAG 95
+ L+D + + S ++ ++ +K E WW+ LL +AG
Sbjct: 14 VGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAG 54
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 1 MSRHPTVK--WAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLY 58
M+ +K W Q +V IT+ + + Q + +E K + P Y + ++L
Sbjct: 4 MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELL 63
Query: 59 DKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKP 97
+ +S V I +KK E W +L Q P
Sbjct: 64 HPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVP 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,860,975
Number of Sequences: 62578
Number of extensions: 144920
Number of successful extensions: 292
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 11
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)