Query 032508
Match_columns 139
No_of_seqs 137 out of 853
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 14:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3158 HSP90 co-chaperone p23 100.0 1.6E-35 3.5E-40 217.1 9.2 116 1-118 4-120 (180)
2 cd00237 p23 p23 binds heat sho 100.0 1.7E-33 3.7E-38 194.7 12.7 105 4-111 1-106 (106)
3 cd06465 p23_hB-ind1_like p23_l 100.0 4.8E-32 1.1E-36 187.4 12.8 107 5-113 1-108 (108)
4 cd06488 p23_melusin_like p23_l 99.9 1.6E-22 3.5E-27 135.0 10.6 85 5-91 1-87 (87)
5 cd06489 p23_CS_hSgt1_like p23_ 99.9 2.2E-22 4.7E-27 133.2 9.1 82 8-91 1-84 (84)
6 PLN03088 SGT1, suppressor of 99.9 3.9E-22 8.6E-27 162.8 7.8 109 4-114 156-285 (356)
7 cd06468 p23_CacyBP p23_like do 99.9 4.6E-21 1E-25 128.5 10.4 84 6-91 3-92 (92)
8 cd06466 p23_CS_SGT1_like p23_l 99.8 2.7E-20 5.9E-25 122.3 8.5 82 8-91 1-84 (84)
9 KOG1309 Suppressor of G2 allel 99.8 3.3E-20 7.1E-25 137.3 6.2 114 3-118 2-132 (196)
10 cd06493 p23_NUDCD1_like p23_NU 99.8 6E-19 1.3E-23 117.1 9.5 80 7-91 1-85 (85)
11 PF04969 CS: CS domain; Inter 99.8 2E-18 4.2E-23 111.3 11.4 75 5-81 1-79 (79)
12 cd06467 p23_NUDC_like p23_like 99.8 8.5E-19 1.8E-23 115.6 9.2 80 7-91 1-85 (85)
13 cd06469 p23_DYX1C1_like p23_li 99.8 2E-18 4.3E-23 112.1 9.1 76 9-91 1-78 (78)
14 cd06463 p23_like Proteins cont 99.8 3.6E-18 7.8E-23 110.8 9.7 81 9-91 1-84 (84)
15 cd06495 p23_NUDCD3_like p23-li 99.8 5.9E-18 1.3E-22 116.3 11.2 92 4-97 4-100 (102)
16 cd06492 p23_mNUDC_like p23-lik 99.8 6.8E-18 1.5E-22 112.9 8.9 80 7-91 1-87 (87)
17 cd06494 p23_NUDCD2_like p23-li 99.8 8.8E-18 1.9E-22 113.6 9.4 82 4-91 5-93 (93)
18 cd06490 p23_NCB5OR p23_like do 99.7 1E-16 2.3E-21 107.0 9.8 80 7-90 1-86 (87)
19 KOG2265 Nuclear distribution p 99.6 3.3E-15 7.2E-20 110.3 7.4 107 3-115 17-130 (179)
20 KOG1667 Zn2+-binding protein M 99.6 7.8E-15 1.7E-19 114.0 7.6 90 3-93 213-304 (320)
21 cd00298 ACD_sHsps_p23-like Thi 99.2 1.6E-10 3.4E-15 72.9 8.5 72 9-81 1-80 (80)
22 COG5091 SGT1 Suppressor of G2 99.0 1.8E-10 3.9E-15 91.1 1.8 114 6-120 178-310 (368)
23 KOG3260 Calcyclin-binding prot 98.9 2.3E-09 4.9E-14 80.1 5.6 84 7-92 77-163 (224)
24 KOG4379 Uncharacterized conser 98.7 3.4E-08 7.4E-13 82.6 6.7 88 1-94 286-378 (596)
25 COG0071 IbpA Molecular chapero 98.2 4.1E-05 8.9E-10 55.3 10.8 82 3-85 39-136 (146)
26 cd06472 ACD_ScHsp26_like Alpha 97.9 0.00018 3.9E-09 47.9 9.3 76 6-81 1-92 (92)
27 cd06471 ACD_LpsHSP_like Group 97.6 0.00089 1.9E-08 44.4 9.2 75 5-81 1-93 (93)
28 PF00011 HSP20: Hsp20/alpha cr 97.5 0.0027 5.9E-08 42.5 10.8 77 8-85 1-91 (102)
29 cd06464 ACD_sHsps-like Alpha-c 97.5 0.0012 2.5E-08 42.5 8.5 72 9-81 2-88 (88)
30 cd06497 ACD_alphaA-crystallin_ 96.7 0.027 5.9E-07 37.2 8.7 71 10-81 6-86 (86)
31 cd06526 metazoan_ACD Alpha-cry 96.7 0.017 3.8E-07 37.5 7.7 67 14-81 7-83 (83)
32 cd06470 ACD_IbpA-B_like Alpha- 96.6 0.07 1.5E-06 35.3 10.6 74 5-81 1-90 (90)
33 PRK10743 heat shock protein Ib 96.6 0.054 1.2E-06 38.9 10.5 76 5-83 35-125 (137)
34 cd06498 ACD_alphaB-crystallin_ 96.5 0.04 8.8E-07 36.2 8.4 70 12-82 5-84 (84)
35 cd06475 ACD_HspB1_like Alpha c 96.5 0.066 1.4E-06 35.3 9.5 72 8-80 4-85 (86)
36 cd06479 ACD_HspB7_like Alpha c 96.4 0.043 9.4E-07 35.9 8.1 71 10-81 4-81 (81)
37 cd06478 ACD_HspB4-5-6 Alpha-cr 96.1 0.09 1.9E-06 34.3 8.6 70 11-81 4-83 (83)
38 PRK11597 heat shock chaperone 96.1 0.14 3.1E-06 37.0 10.3 77 4-83 32-123 (142)
39 PF08190 PIH1: pre-RNA process 95.4 0.12 2.6E-06 41.4 8.6 64 12-80 259-327 (328)
40 cd06476 ACD_HspB2_like Alpha c 95.4 0.21 4.6E-06 32.7 8.3 69 12-81 5-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 94.5 0.38 8.3E-06 31.7 7.7 67 13-80 6-86 (87)
42 cd06477 ACD_HspB3_Like Alpha c 89.3 4.5 9.7E-05 26.4 9.0 66 12-78 5-80 (83)
43 PF05455 GvpH: GvpH; InterPro 88.8 7.2 0.00016 29.3 9.3 70 10-84 97-170 (177)
44 cd06482 ACD_HspB10 Alpha cryst 88.1 5.7 0.00012 26.2 8.4 65 12-77 6-83 (87)
45 cd06480 ACD_HspB8_like Alpha-c 76.1 20 0.00043 23.8 8.6 67 12-79 13-89 (91)
46 KOG3247 Uncharacterized conser 71.5 3.1 6.8E-05 35.3 2.3 83 2-90 1-88 (466)
47 cd06526 metazoan_ACD Alpha-cry 48.4 39 0.00085 21.4 3.9 35 49-84 7-41 (83)
48 cd06464 ACD_sHsps-like Alpha-c 47.8 43 0.00093 20.7 4.1 37 48-85 6-42 (88)
49 KOG0710 Molecular chaperone (s 39.0 1.1E+02 0.0024 23.0 5.7 80 6-85 84-183 (196)
50 KOG3591 Alpha crystallins [Pos 34.5 1.9E+02 0.0042 21.4 7.5 68 16-84 74-151 (173)
51 COG4856 Uncharacterized protei 33.0 2.1E+02 0.0045 24.3 6.7 32 54-85 107-138 (403)
52 PF09087 Cyc-maltodext_N: Cycl 31.8 1.6E+02 0.0034 19.5 6.9 54 15-70 15-69 (88)
53 PF06543 Lac_bphage_repr: Lact 28.1 17 0.00036 21.5 -0.3 11 102-112 17-27 (49)
54 PF07944 DUF1680: Putative gly 22.9 4.9E+02 0.011 22.4 7.6 20 5-24 386-405 (520)
55 cd05885 Ig2_Necl-4 Second immu 21.8 2.3E+02 0.0049 18.1 4.9 50 4-56 14-63 (80)
No 1
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=217.11 Aligned_cols=116 Identities=44% Similarity=0.791 Sum_probs=107.4
Q ss_pred CCCCCCeEEEecCCeEEEEEEcCCCCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEE
Q 032508 1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (139)
Q Consensus 1 m~~~P~~~W~Qt~~~V~ItI~l~~~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~ 80 (139)
|.++|.+.||||.+.|+|+|.+.++++++|++++. .|.|+|+++++++.|+++|+||++|+|++|++++.++.|..+|+
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~ 82 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILR 82 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEE
Confidence 34789999999999999999999999999999997 99999998778889999999999999999999999999999999
Q ss_pred ecCC-ccccccccccccCCCceeecCcccccCcccCCCC
Q 032508 81 KAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDD 118 (139)
Q Consensus 81 K~~~-~~W~~L~~~~~k~~~~~~~Dwd~~~de~d~e~~~ 118 (139)
|++. .+||||++.+.|+| ||++||++|+||+|+++.+
T Consensus 83 K~e~~~~WprLtkeK~K~h-wLkvDFdkW~Dededde~~ 120 (180)
T KOG3158|consen 83 KKELGEYWPRLTKEKAKLH-WLKVDFDKWVDEDEDDEAE 120 (180)
T ss_pred ccccccccchhhhcccccc-eEEcchhhccccccccchh
Confidence 9988 59999999999988 9999999999999665543
No 2
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=100.00 E-value=1.7e-33 Score=194.72 Aligned_cols=105 Identities=37% Similarity=0.638 Sum_probs=98.0
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecC
Q 032508 4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE 83 (139)
Q Consensus 4 ~P~~~W~Qt~~~V~ItI~l~~~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~ 83 (139)
.|.+.||||.+.|+|||.++++++++|+++++ +|+|++.++ ++.+|.++++||++|+|++|++++.+++|+|+|+|++
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~~-~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEKS-KLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEecC-EEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence 48999999999999999999999999999997 999999764 5677999999999999999999999999999999998
Q ss_pred Cc-cccccccccccCCCceeecCcccccC
Q 032508 84 NK-WWSRLLKQAGKPPVFLKVDWDKWIDE 111 (139)
Q Consensus 84 ~~-~W~~L~~~~~k~~~~~~~Dwd~~~de 111 (139)
++ +||||++++.|++ |+++||+||+||
T Consensus 79 ~~~~WprL~k~~~k~~-~lk~DfdkW~D~ 106 (106)
T cd00237 79 EGVAWPRLTKEKAKPN-WLSVDFDNWRDW 106 (106)
T ss_pred CCCCCchhhcCCCCCC-cEECcchhccCC
Confidence 65 9999999998866 999999999986
No 3
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=100.00 E-value=4.8e-32 Score=187.44 Aligned_cols=107 Identities=51% Similarity=0.942 Sum_probs=100.2
Q ss_pred CCeEEEecCCeEEEEEEcCCCCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecC-
Q 032508 5 PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE- 83 (139)
Q Consensus 5 P~~~W~Qt~~~V~ItI~l~~~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~- 83 (139)
|.|.||||.+.|+|+|++++++++.|.|+++ +|+|++.++.+++.|.++++||++|+|++|+|++.+++|+|+|+|++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~~-~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEECC-EEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 7899999999999999999999999999997 99999876445677999999999999999999999999999999999
Q ss_pred CccccccccccccCCCceeecCcccccCcc
Q 032508 84 NKWWSRLLKQAGKPPVFLKVDWDKWIDEDE 113 (139)
Q Consensus 84 ~~~W~~L~~~~~k~~~~~~~Dwd~~~de~d 113 (139)
+++|++|+++++|++ |+++||+||.||+|
T Consensus 80 ~~~W~~L~~~~~k~~-~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKGKLP-WLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCCCCC-ceECCchhcccCCC
Confidence 789999999999987 99999999999876
No 4
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.89 E-value=1.6e-22 Score=135.02 Aligned_cols=85 Identities=16% Similarity=0.305 Sum_probs=76.6
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEec
Q 032508 5 PTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA 82 (139)
Q Consensus 5 P~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~ 82 (139)
+||+||||.+.|+|+|+++++ +++.|.++++ ++.|++..+ ++..|.+.++||++|+|+.|++++.+++|+|+|+|+
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeC
Confidence 589999999999999999875 5788999886 988887653 456799999999999999999999999999999999
Q ss_pred CCccccccc
Q 032508 83 ENKWWSRLL 91 (139)
Q Consensus 83 ~~~~W~~L~ 91 (139)
+++.|++|+
T Consensus 79 ~~~~W~~Le 87 (87)
T cd06488 79 EPGSWAKLE 87 (87)
T ss_pred CCCcCccCC
Confidence 999999995
No 5
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.88 E-value=2.2e-22 Score=133.16 Aligned_cols=82 Identities=24% Similarity=0.390 Sum_probs=75.9
Q ss_pred EEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecCCc
Q 032508 8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK 85 (139)
Q Consensus 8 ~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~~ 85 (139)
+||||.+.|+|+|+++++ +++.|+|+++ +|+|++.+ .++..|.++++||++|+|++|++++.+++|+|+|+|++++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKL-PSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAI 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEEC-CCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCC
Confidence 599999999999999998 7999999997 99999886 3556799999999999999999999999999999999988
Q ss_pred cccccc
Q 032508 86 WWSRLL 91 (139)
Q Consensus 86 ~W~~L~ 91 (139)
+|++|+
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999995
No 6
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.86 E-value=3.9e-22 Score=162.82 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=90.8
Q ss_pred CCCeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEe
Q 032508 4 HPTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKK 81 (139)
Q Consensus 4 ~P~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K 81 (139)
.+|++|||+.+.|+|+|+++++ .++.|+|+++ +|.+++.. .++..|.+.+.||++|+|+.|++++.+++|+|+|+|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K 233 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEV-PGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAK 233 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEec-CCCcceeecccccccccccccEEEEecceEEEEEec
Confidence 3689999999999999999987 5889999887 99998875 355789999999999999999999999999999999
Q ss_pred cCCcccccccccccc--C---------------CC--ceeecCcccccCccc
Q 032508 82 AENKWWSRLLKQAGK--P---------------PV--FLKVDWDKWIDEDEE 114 (139)
Q Consensus 82 ~~~~~W~~L~~~~~k--~---------------~~--~~~~Dwd~~~de~d~ 114 (139)
++++.|++|+..+.. . |. -.++|||++..+.++
T Consensus 234 ~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~ 285 (356)
T PLN03088 234 AEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKK 285 (356)
T ss_pred CCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhh
Confidence 999999999865321 0 10 125799999866433
No 7
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.86 E-value=4.6e-21 Score=128.51 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=76.0
Q ss_pred CeEEEecCCeEEEEEEcCCC-----CcccEEEecCcEEEEEEEeCCCCCcEEEEEe-cccccccCCceEEecCCeEEEEE
Q 032508 6 TVKWAQRTDRVYITIDLPDA-----QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHYLV 79 (139)
Q Consensus 6 ~~~W~Qt~~~V~ItI~l~~~-----~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~-L~~~I~pe~s~~~i~~~kvei~L 79 (139)
+|.|+||.+.|+|+|+++++ ++++|+|+++ +|.|++.+ .++.+|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~-~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHD-LNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEEC-CCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 69999999999999999975 6789999887 99999864 35678999986 99999999999999999999999
Q ss_pred EecCCccccccc
Q 032508 80 KKAENKWWSRLL 91 (139)
Q Consensus 80 ~K~~~~~W~~L~ 91 (139)
+|+++++|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999999999995
No 8
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.83 E-value=2.7e-20 Score=122.26 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=75.0
Q ss_pred EEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecCCc
Q 032508 8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK 85 (139)
Q Consensus 8 ~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~~ 85 (139)
+|+||.+.|+|+|+++++ +++.|.++++ +|.|++..+ ++..|.++++||++|+|++|+|++.+++|+|+|+|++++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPG 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCC
Confidence 599999999999999987 7999999987 999988752 356799999999999999999999999999999999999
Q ss_pred cccccc
Q 032508 86 WWSRLL 91 (139)
Q Consensus 86 ~W~~L~ 91 (139)
.||+|.
T Consensus 79 ~W~~L~ 84 (84)
T cd06466 79 SWPSLE 84 (84)
T ss_pred CCccCC
Confidence 999985
No 9
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.3e-20 Score=137.30 Aligned_cols=114 Identities=25% Similarity=0.379 Sum_probs=95.0
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEE
Q 032508 3 RHPTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (139)
Q Consensus 3 ~~P~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~ 80 (139)
-.++|+|||+...|+|+|+.+++ +++.|.|+.. .|++...+ +++..|.+.+.||++|.|+.|++++.+.+|||+|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~-~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQL-PSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLA 79 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEec-CCchhhhhhHHhcccccccceeeEeeeeeEEEEec
Confidence 35799999999999999999997 5888999875 88888886 36778999999999999999999999999999999
Q ss_pred ecCCccccccccccccC--------------C-CceeecCcccccCcccCCCC
Q 032508 81 KAENKWWSRLLKQAGKP--------------P-VFLKVDWDKWIDEDEEGKDD 118 (139)
Q Consensus 81 K~~~~~W~~L~~~~~k~--------------~-~~~~~Dwd~~~de~d~e~~~ 118 (139)
|++...|..|.+++... | .-.++|||+...|++.+|++
T Consensus 80 K~~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~ 132 (196)
T KOG1309|consen 80 KAEIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEED 132 (196)
T ss_pred cccchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhc
Confidence 98888999999643211 1 11378999999877665543
No 10
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.80 E-value=6e-19 Score=117.13 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=69.1
Q ss_pred eEEEecCCeEEEEEEcC-CC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecC-CeEEEEEEec
Q 032508 7 VKWAQRTDRVYITIDLP-DA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKKA 82 (139)
Q Consensus 7 ~~W~Qt~~~V~ItI~l~-~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~-~kvei~L~K~ 82 (139)
|.|+||.++|+|+|+++ ++ ++++|.++++ +|.+.+.+ ....++++||+.|+|++|+|++.+ ++|+|+|.|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~~----~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALKD----QAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeCC----CCeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 78999999999999997 43 7999999997 99997642 234578999999999999999965 5799999999
Q ss_pred CCc-cccccc
Q 032508 83 ENK-WWSRLL 91 (139)
Q Consensus 83 ~~~-~W~~L~ 91 (139)
+++ +||+|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06493 76 DEGPTWPELV 85 (85)
T ss_pred CCCccccccC
Confidence 977 999984
No 11
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.79 E-value=2e-18 Score=111.28 Aligned_cols=75 Identities=31% Similarity=0.460 Sum_probs=66.6
Q ss_pred CCeEEEecCCeEEEEEEcCCC----CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEE
Q 032508 5 PTVKWAQRTDRVYITIDLPDA----QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (139)
Q Consensus 5 P~~~W~Qt~~~V~ItI~l~~~----~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~ 80 (139)
|+|.|+||.+.|+|+|++++. ++++|.++++ +|.|++..+ ++..|.++++||++|+|++|+|++.+++|+|+|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSG-DGKEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEET-TSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEcc-CCceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 899999999999999999654 6999999997 999998853 3378999999999999999999999999999999
Q ss_pred e
Q 032508 81 K 81 (139)
Q Consensus 81 K 81 (139)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 8
No 12
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.79 E-value=8.5e-19 Score=115.58 Aligned_cols=80 Identities=30% Similarity=0.566 Sum_probs=72.2
Q ss_pred eEEEecCCeEEEEEEcCCC---CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecC-CeEEEEEEec
Q 032508 7 VKWAQRTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKKA 82 (139)
Q Consensus 7 ~~W~Qt~~~V~ItI~l~~~---~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~-~kvei~L~K~ 82 (139)
|.|+||.+.|+|+|.+++. ++++|+++++ +|.|++.+ ..+.+.+.||++|+|++|+|++.+ ++|+|+|+|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~----~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG----GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECC----CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence 7899999999999999864 7999999997 99998753 357789999999999999999999 9999999999
Q ss_pred CC-ccccccc
Q 032508 83 EN-KWWSRLL 91 (139)
Q Consensus 83 ~~-~~W~~L~ 91 (139)
++ .+|++|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06467 76 NEGEWWPSLV 85 (85)
T ss_pred CCCccccccC
Confidence 98 5999984
No 13
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.78 E-value=2e-18 Score=112.08 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=67.4
Q ss_pred EEecCCeEEEEEEcCCCC--cccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecCCcc
Q 032508 9 WAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKW 86 (139)
Q Consensus 9 W~Qt~~~V~ItI~l~~~~--~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~~~ 86 (139)
|+||.+.|+|+|.+++++ ++.|++++. +|.+++ ..|.+.++||++|+|++|++++.+++|+|+|.|+++++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~ 73 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGI 73 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCc
Confidence 999999999999999874 667777765 666653 46999999999999999999999999999999999899
Q ss_pred ccccc
Q 032508 87 WSRLL 91 (139)
Q Consensus 87 W~~L~ 91 (139)
|++|.
T Consensus 74 W~~L~ 78 (78)
T cd06469 74 WEALC 78 (78)
T ss_pred ccccC
Confidence 99985
No 14
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.77 E-value=3.6e-18 Score=110.80 Aligned_cols=81 Identities=37% Similarity=0.597 Sum_probs=74.3
Q ss_pred EEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecCC-c
Q 032508 9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAEN-K 85 (139)
Q Consensus 9 W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~-~ 85 (139)
|+|+.+.|+|+|+++++ +++.|.++++ +|.|++.+ .++..|.++++||++|+|++|+|++.+++|+|+|.|+.+ +
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~-~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKG-GGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeC-CCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCC
Confidence 99999999999999987 7999999986 99999875 235789999999999999999999999999999999998 6
Q ss_pred cccccc
Q 032508 86 WWSRLL 91 (139)
Q Consensus 86 ~W~~L~ 91 (139)
+|++|+
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999984
No 15
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.77 E-value=5.9e-18 Score=116.26 Aligned_cols=92 Identities=17% Similarity=0.333 Sum_probs=79.2
Q ss_pred CCCeEEEecCCeEEEEEEcCC----CCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCC-eEEEE
Q 032508 4 HPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLR-NIHYL 78 (139)
Q Consensus 4 ~P~~~W~Qt~~~V~ItI~l~~----~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~-kvei~ 78 (139)
++.|.|+||.++|.|+|++|. +++++|+|+++ +|.+..+++ +++...++++||+.|++++|+|++.++ .|+|+
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~-~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~ 81 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDG-GGEKVLMEGEFTHKINTENSLWSLEPGKCVLLS 81 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecC-CCCceEEeCcccCcccCccceEEEeCCCEEEEE
Confidence 578999999999999999995 37999999997 999998742 123346899999999999999999885 48999
Q ss_pred EEecCCccccccccccccC
Q 032508 79 VKKAENKWWSRLLKQAGKP 97 (139)
Q Consensus 79 L~K~~~~~W~~L~~~~~k~ 97 (139)
|.|....||++|.++++++
T Consensus 82 L~K~~~~wW~~v~~g~~~i 100 (102)
T cd06495 82 LSKCSEVWWNAVLKGEEEI 100 (102)
T ss_pred EEECCCcccchhhCCCCcC
Confidence 9999878999999998654
No 16
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.75 E-value=6.8e-18 Score=112.86 Aligned_cols=80 Identities=24% Similarity=0.465 Sum_probs=70.7
Q ss_pred eEEEecCCeEEEEEEcCC-----CCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecC-CeEEEEEE
Q 032508 7 VKWAQRTDRVYITIDLPD-----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVK 80 (139)
Q Consensus 7 ~~W~Qt~~~V~ItI~l~~-----~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~-~kvei~L~ 80 (139)
|.|.||.++|.|+|.++. +++++|+++++ +|++.+++ +++.++++||++|+|++|+|++.+ +.|.|+|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g----~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKG----QPPIIDGELYNEVKVEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECC----CceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence 789999999999999953 47999999997 99998763 467899999999999999999977 57999999
Q ss_pred ecCCc-cccccc
Q 032508 81 KAENK-WWSRLL 91 (139)
Q Consensus 81 K~~~~-~W~~L~ 91 (139)
|++++ +|++|.
T Consensus 76 K~~~~~wW~~l~ 87 (87)
T cd06492 76 KINKMEWWSRLV 87 (87)
T ss_pred ECCCCccccccC
Confidence 99765 999984
No 17
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.75 E-value=8.8e-18 Score=113.64 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=72.3
Q ss_pred CCCeEEEecCCeEEEEEEcCC---CCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCe-EEEEE
Q 032508 4 HPTVKWAQRTDRVYITIDLPD---AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRN-IHYLV 79 (139)
Q Consensus 4 ~P~~~W~Qt~~~V~ItI~l~~---~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~k-vei~L 79 (139)
++.|.|+||.++|+|+|.++. +++++|.|+++ +|.+.+++ .. .++++||+.|+|++|+|++.+++ |+|+|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g----~~-~l~G~L~~~I~~destWtled~k~l~I~L 78 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG----QE-VLKGKLFDSVVADECTWTLEDRKLIRIVL 78 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC----EE-EEcCcccCccCcccCEEEEECCcEEEEEE
Confidence 578999999999999999985 37999999997 99998753 34 68899999999999999999988 69999
Q ss_pred EecCCc---cccccc
Q 032508 80 KKAENK---WWSRLL 91 (139)
Q Consensus 80 ~K~~~~---~W~~L~ 91 (139)
.|.+.. +|++|+
T Consensus 79 ~K~~~~~~~~W~sl~ 93 (93)
T cd06494 79 TKSNRDAGNCWKSLL 93 (93)
T ss_pred EeCCCCCCccccccC
Confidence 999644 999884
No 18
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.71 E-value=1e-16 Score=107.02 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=66.3
Q ss_pred eEEEecCCeEEEEEEcCC--CCccc--EEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEec--CCeEEEEEE
Q 032508 7 VKWAQRTDRVYITIDLPD--AQDVK--LKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG--LRNIHYLVK 80 (139)
Q Consensus 7 ~~W~Qt~~~V~ItI~l~~--~~~~~--V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~--~~kvei~L~ 80 (139)
|+||||.+.|+|+|+.+. ..+.. +.++.+ +|++++..+ +..|.++++||++|+|+. ++++. ++||||+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence 689999999999999884 34444 555665 888887753 567999999999998765 88887 569999999
Q ss_pred ecCCcccccc
Q 032508 81 KAENKWWSRL 90 (139)
Q Consensus 81 K~~~~~W~~L 90 (139)
|+++..|++|
T Consensus 77 K~e~~~W~~L 86 (87)
T cd06490 77 KKEPEKWTSL 86 (87)
T ss_pred cCCCCccccC
Confidence 9999999998
No 19
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.59 E-value=3.3e-15 Score=110.28 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=85.9
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEE
Q 032508 3 RHPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYL 78 (139)
Q Consensus 3 ~~P~~~W~Qt~~~V~ItI~l~~----~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~ 78 (139)
..+.|.|+||-.+|.|.|.++. +++++|.|... +|.++.++ ++.+++++|+++|++++|+|+|.++++.++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~kg----~~~ildG~L~~~vk~des~WtiEd~k~i~i 91 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGLKG----QPPILDGELSHSVKVDESTWTIEDGKMIVI 91 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEecCC----CCceecCccccccccccceEEecCCEEEEE
Confidence 4578999999999999999984 36899999886 99888764 557799999999999999999999876665
Q ss_pred EEecCC--ccccccccccccCCCceeecC-cccccCcccC
Q 032508 79 VKKAEN--KWWSRLLKQAGKPPVFLKVDW-DKWIDEDEEG 115 (139)
Q Consensus 79 L~K~~~--~~W~~L~~~~~k~~~~~~~Dw-d~~~de~d~e 115 (139)
+.|+.. .||.+|..+++.+. .-+++- .+-....|+|
T Consensus 92 ~l~K~~~~eWW~~ll~gep~ID-~~ki~~e~skl~dldeE 130 (179)
T KOG2265|consen 92 LLKKSNKMEWWDSLLEGEPEID-TKKIEPEESKLSDLDEE 130 (179)
T ss_pred EeeccchHHHHHHHHcCCCCCC-ccccChhhhhhhhccHH
Confidence 555544 49999999988776 467887 5455555543
No 20
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.57 E-value=7.8e-15 Score=114.03 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=80.7
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEE
Q 032508 3 RHPTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (139)
Q Consensus 3 ~~P~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~ 80 (139)
..+|++|.||...|+|+|+.++. ....|+.++. .|++++..+.++..|.++++|++.|++++|++.+.+++|||+|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 45799999999999999999986 4556777776 88888887667788999999999999999999999999999999
Q ss_pred ecCCccccccccc
Q 032508 81 KAENKWWSRLLKQ 93 (139)
Q Consensus 81 K~~~~~W~~L~~~ 93 (139)
|++++.|++|...
T Consensus 292 k~ep~sWa~Le~p 304 (320)
T KOG1667|consen 292 KAEPGSWARLEFP 304 (320)
T ss_pred ccCCCCcccccCC
Confidence 9999999999866
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.20 E-value=1.6e-10 Score=72.88 Aligned_cols=72 Identities=29% Similarity=0.445 Sum_probs=64.4
Q ss_pred EEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC------CCCcEEEEEecccccccCCceEEecCCeEEEEEE
Q 032508 9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP------DKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (139)
Q Consensus 9 W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~------~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~ 80 (139)
|+|+.+.++|+|.+++. +++.|.+..+ .|.|++.... ....|.+.+.|++.|+|+++++++.++.|+|+|+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 89999999999999987 6889999886 9999987521 2468999999999999999999999999999998
Q ss_pred e
Q 032508 81 K 81 (139)
Q Consensus 81 K 81 (139)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.97 E-value=1.8e-10 Score=91.08 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=88.1
Q ss_pred CeEEEecCCeEEEEEEcCCCC--cccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecC
Q 032508 6 TVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE 83 (139)
Q Consensus 6 ~~~W~Qt~~~V~ItI~l~~~~--~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~ 83 (139)
+|+|+||..++.|-|+.+.+. ++.+-++.+ +|+++.+....+-.+.+.+.||++|.|+.+..++.+.++++.|+|.+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhh
Confidence 588889998888888888775 555666775 99999886445556677788999999999999999988999999999
Q ss_pred Cccccccccccc----------cC-----C--CceeecCcccccCcccCCCCCC
Q 032508 84 NKWWSRLLKQAG----------KP-----P--VFLKVDWDKWIDEDEEGKDDKP 120 (139)
Q Consensus 84 ~~~W~~L~~~~~----------k~-----~--~~~~~Dwd~~~de~d~e~~~~~ 120 (139)
...|..|.+... +. | .--++||++...+++-+||++.
T Consensus 257 ~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps 310 (368)
T COG5091 257 MVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPS 310 (368)
T ss_pred hhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCch
Confidence 999999985321 10 1 1247899999877766554433
No 23
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=98.91 E-value=2.3e-09 Score=80.08 Aligned_cols=84 Identities=23% Similarity=0.386 Sum_probs=76.0
Q ss_pred eEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCCCCcEEEEEe-cccccccCCceEEecCCeEEEEEEecC
Q 032508 7 VKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHYLVKKAE 83 (139)
Q Consensus 7 ~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~-L~~~I~pe~s~~~i~~~kvei~L~K~~ 83 (139)
|-|.|+.+.|-+.|.+.++ ++++|+|++. +|.+.+.. -+|+.|.+.+. |.++|.|+.|..++....|.|.++|.+
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~d-lqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHD-LQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVE 154 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeee-cCCcceeeehhhhccccChhhcccccccceEEEeehhhh
Confidence 8999999999999999987 5889999996 98888775 47789999986 999999999999999999999999999
Q ss_pred Ccccccccc
Q 032508 84 NKWWSRLLK 92 (139)
Q Consensus 84 ~~~W~~L~~ 92 (139)
..+|.-|+.
T Consensus 155 ~~rwd~Lt~ 163 (224)
T KOG3260|consen 155 NTRWDYLTQ 163 (224)
T ss_pred cccchHHHH
Confidence 889999974
No 24
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.71 E-value=3.4e-08 Score=82.55 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=73.2
Q ss_pred CCCCCCeEEEecCCeEEEEEEcCC---CCcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecC-CeEE
Q 032508 1 MSRHPTVKWAQRTDRVYITIDLPD---AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIH 76 (139)
Q Consensus 1 m~~~P~~~W~Qt~~~V~ItI~l~~---~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~-~kve 76 (139)
|-.+|.|.|.|+.+.+.+++.++. .+++.|.+..+ ++.+.... .-.++++||+.|..|.|.|.|.. ++++
T Consensus 286 ~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~-~v~v~~~d-----h~~~~g~lyasv~he~s~~ii~ean~Le 359 (596)
T KOG4379|consen 286 NGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKT-TVVVKHLD-----HVIFDGELYASVGHELSAFIIAEANGLE 359 (596)
T ss_pred ccCCccceeeeccCcceEEEecccccccceEEEEecCc-eEEEEeee-----eEEeccchhhhccccchhhhhhhhccce
Confidence 457899999999999999999995 35777888776 77665442 44689999999999999999955 9999
Q ss_pred EEEEecCCc-ccccccccc
Q 032508 77 YLVKKAENK-WWSRLLKQA 94 (139)
Q Consensus 77 i~L~K~~~~-~W~~L~~~~ 94 (139)
+.|.|++.. .||||..++
T Consensus 360 ~sl~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 360 LSLTKADEIQTWPRLFAQD 378 (596)
T ss_pred EEEeecccccccchheeec
Confidence 999999765 899998654
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.1e-05 Score=55.34 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=70.0
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCC--------------CCcEEEEEecccccccCCc
Q 032508 3 RHPTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPD--------------KIPYEVDIDLYDKVDVNES 66 (139)
Q Consensus 3 ~~P~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~--------------~~~y~~~l~L~~~I~pe~s 66 (139)
..|.|+.+++.+.+.|++.+++. ++++|.+..+ .|++++..... ...|.-.+.|-..|+|+..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 46999999999999999999997 4888888886 99999886210 2457788999999999988
Q ss_pred eEEecCCeEEEEEEecCCc
Q 032508 67 KASVGLRNIHYLVKKAENK 85 (139)
Q Consensus 67 ~~~i~~~kvei~L~K~~~~ 85 (139)
+.+...+-+.|+|.|..+.
T Consensus 118 ~A~~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPE 136 (146)
T ss_pred eeEeeCcEEEEEEeccccc
Confidence 8889999999999998764
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.91 E-value=0.00018 Score=47.91 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=61.2
Q ss_pred CeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC--------------CCCcEEEEEecccccccCCceEE
Q 032508 6 TVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP--------------DKIPYEVDIDLYDKVDVNESKAS 69 (139)
Q Consensus 6 ~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~--------------~~~~y~~~l~L~~~I~pe~s~~~ 69 (139)
+++|+++.+.+.|.+.+|++ ++++|.+..++.|++++.... ....|.-.+.|-..|+++..+.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 57899999999999999997 477888865337888876311 11357778899999999998999
Q ss_pred ecCCeEEEEEEe
Q 032508 70 VGLRNIHYLVKK 81 (139)
Q Consensus 70 i~~~kvei~L~K 81 (139)
+..+-+.|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999987
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.63 E-value=0.00089 Score=44.45 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC------C----------CCcEEEEEecccccccCCc
Q 032508 5 PTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP------D----------KIPYEVDIDLYDKVDVNES 66 (139)
Q Consensus 5 P~~~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~------~----------~~~y~~~l~L~~~I~pe~s 66 (139)
|+++++++.+.+.|.+.+|++ ++++|.+..+ .|.+++.... . ...|.-.+.| ..|+++..
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~l-p~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYL-PNVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEEC-CCCCHHHC
Confidence 578999999999999999997 4888888876 9999876521 0 0124445666 47999888
Q ss_pred eEEecCCeEEEEEEe
Q 032508 67 KASVGLRNIHYLVKK 81 (139)
Q Consensus 67 ~~~i~~~kvei~L~K 81 (139)
+.++.++-+.|+|.|
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999989999999987
No 28
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.55 E-value=0.0027 Score=42.50 Aligned_cols=77 Identities=27% Similarity=0.391 Sum_probs=59.9
Q ss_pred EEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeC---CCC---------CcEEEEEecccccccCCceEEecCC
Q 032508 8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSG---PDK---------IPYEVDIDLYDKVDVNESKASVGLR 73 (139)
Q Consensus 8 ~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~---~~~---------~~y~~~l~L~~~I~pe~s~~~i~~~ 73 (139)
+|.++.+.+.|.+.+++. ++++|.+... .|.+++... .+. ..|.-.+.|-..|+++..+.++..+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 589999999999999987 5888999886 899987752 111 2566678899999999999999889
Q ss_pred eEEEEEEecCCc
Q 032508 74 NIHYLVKKAENK 85 (139)
Q Consensus 74 kvei~L~K~~~~ 85 (139)
.+.|++.|..+.
T Consensus 80 vL~I~~pk~~~~ 91 (102)
T PF00011_consen 80 VLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEBSSSC
T ss_pred EEEEEEEccccc
Confidence 999999998754
No 29
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.53 E-value=0.0012 Score=42.55 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=60.6
Q ss_pred EEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC-------------CCCcEEEEEecccccccCCceEEecCC
Q 032508 9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP-------------DKIPYEVDIDLYDKVDVNESKASVGLR 73 (139)
Q Consensus 9 W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~-------------~~~~y~~~l~L~~~I~pe~s~~~i~~~ 73 (139)
++++.+.+.|.+.+++. ++++|.+..+ .|.+++.... ....|...+.|-..|+++..+.++..+
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 67889999999999997 5888888886 9999877521 135688899999999999999999999
Q ss_pred eEEEEEEe
Q 032508 74 NIHYLVKK 81 (139)
Q Consensus 74 kvei~L~K 81 (139)
.+.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999876
No 30
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.68 E-value=0.027 Score=37.16 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=56.5
Q ss_pred EecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC--CC-----CcEEEEEecccccccCCceEEe-cCCeEEEEE
Q 032508 10 AQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNIHYLV 79 (139)
Q Consensus 10 ~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~--~~-----~~y~~~l~L~~~I~pe~s~~~i-~~~kvei~L 79 (139)
+.+.+.+.|.+.+|+. ++++|++..+ .|.+++.... .+ .+|.-.+.|-..|+++..+.++ ..+-+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 4678899999999997 4888899876 9999986411 11 2255577899999999999999 688999999
Q ss_pred Ee
Q 032508 80 KK 81 (139)
Q Consensus 80 ~K 81 (139)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 87
No 31
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.67 E-value=0.017 Score=37.50 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=54.7
Q ss_pred CeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCCC-------CCcEEEEEecccccccCCceEEecC-CeEEEEEEe
Q 032508 14 DRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPD-------KIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKK 81 (139)
Q Consensus 14 ~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~~-------~~~y~~~l~L~~~I~pe~s~~~i~~-~kvei~L~K 81 (139)
+.+.|.+.+++. ++++|.+..+ .|.+++..... ...|.-.+.|-..|+++..+.++.. +-+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 578999999987 5889999886 99999875211 1357778899999999999999987 889999876
No 32
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.65 E-value=0.07 Score=35.27 Aligned_cols=74 Identities=16% Similarity=0.287 Sum_probs=56.0
Q ss_pred CCeEEEecC-CeEEEEEEcCCCC--cccEEEecCcEEEEEEEeCCC-------------CCcEEEEEecccccccCCceE
Q 032508 5 PTVKWAQRT-DRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------------KIPYEVDIDLYDKVDVNESKA 68 (139)
Q Consensus 5 P~~~W~Qt~-~~V~ItI~l~~~~--~~~V~~~~~~~l~~~~~~~~~-------------~~~y~~~l~L~~~I~pe~s~~ 68 (139)
|+++=+++. +...|++.+|+++ +++|.+..+ .|.+++..... ...|.-.+.|-..|+.+ +.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 566667775 8999999999974 788888776 99998764111 23477778888889885 56
Q ss_pred EecCCeEEEEEEe
Q 032508 69 SVGLRNIHYLVKK 81 (139)
Q Consensus 69 ~i~~~kvei~L~K 81 (139)
+..++.+.|+|.+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 7788889998864
No 33
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.60 E-value=0.054 Score=38.94 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=60.1
Q ss_pred CCeEEEe-cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC--CC----------CcEEEEEecccccccCCceEE
Q 032508 5 PTVKWAQ-RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP--DK----------IPYEVDIDLYDKVDVNESKAS 69 (139)
Q Consensus 5 P~~~W~Q-t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~--~~----------~~y~~~l~L~~~I~pe~s~~~ 69 (139)
|+++-++ +.+.+.|++.+|++ ++++|+++.+ .|++++.... .+ ..|.-.+.|-..|++++ .+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 7889995 89999999999997 4888999875 9999886411 11 13555778889999984 66
Q ss_pred ecCCeEEEEEEecC
Q 032508 70 VGLRNIHYLVKKAE 83 (139)
Q Consensus 70 i~~~kvei~L~K~~ 83 (139)
...+-+.|+|.|+.
T Consensus 112 ~~dGVL~I~lPK~~ 125 (137)
T PRK10743 112 LVNGLLYIDLERVI 125 (137)
T ss_pred EeCCEEEEEEeCCC
Confidence 78889999999964
No 34
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.46 E-value=0.04 Score=36.19 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=55.6
Q ss_pred cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC--CC-----CcEEEEEecccccccCCceEEec-CCeEEEEEEe
Q 032508 12 RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKK 81 (139)
Q Consensus 12 t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~--~~-----~~y~~~l~L~~~I~pe~s~~~i~-~~kvei~L~K 81 (139)
+.+...|++.+++. ++++|.+..+ .|.+++.... .. .+|.-.+.|-..|+++..+.++. ++-+.|+|.|
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 56789999999987 5888999876 9999986411 11 12666778999999999999995 8899999987
Q ss_pred c
Q 032508 82 A 82 (139)
Q Consensus 82 ~ 82 (139)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 35
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.46 E-value=0.066 Score=35.30 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=57.5
Q ss_pred EEEecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC---CC----CcEEEEEecccccccCCceEEec-CCeEEE
Q 032508 8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP---DK----IPYEVDIDLYDKVDVNESKASVG-LRNIHY 77 (139)
Q Consensus 8 ~W~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~---~~----~~y~~~l~L~~~I~pe~s~~~i~-~~kvei 77 (139)
..+.+.+.+.|.+.+|+. ++++|.+..+ .|.+++.... .. ..|.-.+.|-..|++++.+-++. ++-+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 578899999999999997 4888888776 9999987621 11 23666788999999999999996 788888
Q ss_pred EEE
Q 032508 78 LVK 80 (139)
Q Consensus 78 ~L~ 80 (139)
+|.
T Consensus 83 ~lP 85 (86)
T cd06475 83 EAP 85 (86)
T ss_pred Eec
Confidence 763
No 36
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.38 E-value=0.043 Score=35.93 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=56.6
Q ss_pred EecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeC-CCC---CcEEEEEecccccccCCceEEe-cCCeEEEEEEe
Q 032508 10 AQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSG-PDK---IPYEVDIDLYDKVDVNESKASV-GLRNIHYLVKK 81 (139)
Q Consensus 10 ~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~-~~~---~~y~~~l~L~~~I~pe~s~~~i-~~~kvei~L~K 81 (139)
+.+.+.+.|++.+|+. ++++|++... .|++++.-. ..+ ..|.-.+.|-..|+++..+.++ ..+.+.|++++
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 3577889999999986 5889999876 999988641 111 3566778899999999999997 78889999864
No 37
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.11 E-value=0.09 Score=34.34 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=54.9
Q ss_pred ecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC--CC-----CcEEEEEecccccccCCceEEe-cCCeEEEEEE
Q 032508 11 QRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNIHYLVK 80 (139)
Q Consensus 11 Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~--~~-----~~y~~~l~L~~~I~pe~s~~~i-~~~kvei~L~ 80 (139)
.+.+.+.|.+.+|+. ++++|++..+ .|.+++.... .. .+|.-.+.|-..|+++..+.++ ..+-+.|++.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 467889999999987 5888999876 9999886411 11 2356677898999999999998 4788999987
Q ss_pred e
Q 032508 81 K 81 (139)
Q Consensus 81 K 81 (139)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 6
No 38
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.10 E-value=0.14 Score=37.05 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=59.2
Q ss_pred CCCeEEEe-cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeC--CCC----------CcEEEEEecccccccCCceE
Q 032508 4 HPTVKWAQ-RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSG--PDK----------IPYEVDIDLYDKVDVNESKA 68 (139)
Q Consensus 4 ~P~~~W~Q-t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~--~~~----------~~y~~~l~L~~~I~pe~s~~ 68 (139)
.|.++=++ +.+.+.|++.+|++ +++.|.++.+ .|++++... ..+ ..|.-.+.|-..|+++ .-
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 47788887 46789999999998 4888888775 999988741 111 2356667788899997 46
Q ss_pred EecCCeEEEEEEecC
Q 032508 69 SVGLRNIHYLVKKAE 83 (139)
Q Consensus 69 ~i~~~kvei~L~K~~ 83 (139)
+..++-+.|+|.|..
T Consensus 109 ~~~nGVL~I~lPK~~ 123 (142)
T PRK11597 109 TFVNGLLHIDLIRNE 123 (142)
T ss_pred EEcCCEEEEEEeccC
Confidence 778899999999974
No 39
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.44 E-value=0.12 Score=41.38 Aligned_cols=64 Identities=20% Similarity=0.412 Sum_probs=52.5
Q ss_pred cCCeEEEEEEcCCC---CcccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecC--CeEEEEEE
Q 032508 12 RTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL--RNIHYLVK 80 (139)
Q Consensus 12 t~~~V~ItI~l~~~---~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~--~kvei~L~ 80 (139)
..+.+.|+|.++++ +++.++++++ .|.+.+.. ..|.|++.|=.+|+++..+-+... +.+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~----~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSED-RLSLSSPK----PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCC-EEEEEeCC----CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 36789999999986 6889999887 99888652 379999999999999998777644 66888874
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=95.42 E-value=0.21 Score=32.70 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=53.5
Q ss_pred cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeC--CCC-----CcEEEEEecccccccCCceEEec-CCeEEEEEEe
Q 032508 12 RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSG--PDK-----IPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKK 81 (139)
Q Consensus 12 t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~--~~~-----~~y~~~l~L~~~I~pe~s~~~i~-~~kvei~L~K 81 (139)
..+...|++.+++. ++++|++..+ .|.+++... ... .+|.-.+.|-..|+++..+-++. .+.+.|+|.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 45678899999987 4888999876 999988751 111 23555678889999999999996 8889999875
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=94.54 E-value=0.38 Score=31.67 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=50.8
Q ss_pred CCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeC--C--C-C------CcEEEEEecccccccCCceEEe-cCCeEEEE
Q 032508 13 TDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSG--P--D-K------IPYEVDIDLYDKVDVNESKASV-GLRNIHYL 78 (139)
Q Consensus 13 ~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~--~--~-~------~~y~~~l~L~~~I~pe~s~~~i-~~~kvei~ 78 (139)
.+.+.|++.+++. +++.|++..+ .|.+++... . . + ..|.-.+.|-..|+++..+..+ ..+-+.|+
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 5678999999986 5888999875 999988741 1 1 1 2355567888999999998888 66778877
Q ss_pred EE
Q 032508 79 VK 80 (139)
Q Consensus 79 L~ 80 (139)
+.
T Consensus 85 ~P 86 (87)
T cd06481 85 AP 86 (87)
T ss_pred cC
Confidence 63
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=89.26 E-value=4.5 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=48.8
Q ss_pred cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC----CC---CcEEEEEecccccccCCceEEe-cCCeEEEE
Q 032508 12 RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP----DK---IPYEVDIDLYDKVDVNESKASV-GLRNIHYL 78 (139)
Q Consensus 12 t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~----~~---~~y~~~l~L~~~I~pe~s~~~i-~~~kvei~ 78 (139)
+.+...|++.+++. ++++|++..+ .|++++.... .+ ..|.-.+.|-..|+++..+-++ ..+-+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 56778999999987 5889999886 9999987521 11 1345567788999999888887 45666664
No 43
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=88.77 E-value=7.2 Score=29.34 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=50.5
Q ss_pred EecCC-eEEEEEEcCCCC--c-ccEEEecCcEEEEEEEeCCCCCcEEEEEecccccccCCceEEecCCeEEEEEEecCC
Q 032508 10 AQRTD-RVYITIDLPDAQ--D-VKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAEN 84 (139)
Q Consensus 10 ~Qt~~-~V~ItI~l~~~~--~-~~V~~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~ 84 (139)
.++.+ .+.|...||++. + +.|.+..+ ...+.+.. + ..|.-.+.|-.+ .++...+++...-++|+|+|.+.
T Consensus 97 re~dDge~~VvAdLPGVs~dd~idV~l~~d-~~~L~i~~--~-~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 97 RERDDGELVVVADLPGVSDDDAIDVTLDDD-EGALTIRV--G-EKYLKRVALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred EecCCCcEEEEEeCCCCCcccceeeEeecC-CceEEEec--C-CceEeeEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 34455 688999999983 4 67888765 54454442 2 346667888877 57777888888999999999864
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=88.12 E-value=5.7 Score=26.21 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=47.5
Q ss_pred cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC-----CC-----CcEEEEEecccccccCCceEEecCC-eEEE
Q 032508 12 RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP-----DK-----IPYEVDIDLYDKVDVNESKASVGLR-NIHY 77 (139)
Q Consensus 12 t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~-----~~-----~~y~~~l~L~~~I~pe~s~~~i~~~-kvei 77 (139)
..+.+.|++.+|+. ++++|++..+ .|++++.... +. ..|.-.+.|-..|+++..+.+.... .+.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 35789999999987 4889999876 9999987511 11 1234456788899999988888665 5555
No 45
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=76.14 E-value=20 Score=23.84 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=49.5
Q ss_pred cCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC----C---CCcEEEEEecccccccCCceEEec-CCeEEEEE
Q 032508 12 RTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP----D---KIPYEVDIDLYDKVDVNESKASVG-LRNIHYLV 79 (139)
Q Consensus 12 t~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~----~---~~~y~~~l~L~~~I~pe~s~~~i~-~~kvei~L 79 (139)
+.+.-.|.+.+.+. ++++|++..+ .|.++++... + ...|.-.+.|-..|+++..+..+. .+.+.|.+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 45566788888875 5889999886 9999987521 1 134566778999999999888887 56677764
No 46
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.51 E-value=3.1 Score=35.28 Aligned_cols=83 Identities=22% Similarity=0.180 Sum_probs=58.8
Q ss_pred CCCCCeEEEecCCeEEEEEEcCCCCcccEEEecC-cEEEEEEEeCCCCCcEEEEEecccccccCCc---eEEecCCeEEE
Q 032508 2 SRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPE-GKFFFSATSGPDKIPYEVDIDLYDKVDVNES---KASVGLRNIHY 77 (139)
Q Consensus 2 ~~~P~~~W~Qt~~~V~ItI~l~~~~~~~V~~~~~-~~l~~~~~~~~~~~~y~~~l~L~~~I~pe~s---~~~i~~~kvei 77 (139)
+++|++.-.|..+.++|.|+.|-.+-.++++... +-+.|++. +|-+.+.+-+.+..+.. ++-..++.+.|
T Consensus 1 Mltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~------pyflrl~~p~~~~~d~~~n~s~d~kd~~~~v 74 (466)
T KOG3247|consen 1 MLTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG------PYFLRLAGPGMVEDDARPNASYDAKDGYAHV 74 (466)
T ss_pred CCCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc------hhHHhhcCcchhhhhccccCccccccceeEE
Confidence 3689999999999999999999654444444221 25666653 57677777777766543 34456688999
Q ss_pred EEEecCCc-ccccc
Q 032508 78 LVKKAENK-WWSRL 90 (139)
Q Consensus 78 ~L~K~~~~-~W~~L 90 (139)
++.|..++ ..+-|
T Consensus 75 K~~K~~~~e~F~~L 88 (466)
T KOG3247|consen 75 KVPKFHPGEHFSDL 88 (466)
T ss_pred eecCCCccccccch
Confidence 99998876 66654
No 47
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=48.36 E-value=39 Score=21.41 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.6
Q ss_pred CcEEEEEecccccccCCceEEecCCeEEEEEEecCC
Q 032508 49 IPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAEN 84 (139)
Q Consensus 49 ~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~ 84 (139)
..|.+.++|-+ +.|++-.+++.++.|.|+-++...
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEeee
Confidence 47999999998 899999999999999999887653
No 48
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=47.76 E-value=43 Score=20.67 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCcEEEEEecccccccCCceEEecCCeEEEEEEecCCc
Q 032508 48 KIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK 85 (139)
Q Consensus 48 ~~~y~~~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~~ 85 (139)
+..|.+.++|-+ +.+++-..++.++.|.|+-++....
T Consensus 6 ~~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 6 DDAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEeccc
Confidence 357889999988 8999999999999999998887644
No 49
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=39.00 E-value=1.1e+02 Score=23.01 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=57.9
Q ss_pred CeEE--EecCCeEEEEEEcCCC--CcccEEEecCcEEEEEEEeCC----------------CCCcEEEEEecccccccCC
Q 032508 6 TVKW--AQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP----------------DKIPYEVDIDLYDKVDVNE 65 (139)
Q Consensus 6 ~~~W--~Qt~~~V~ItI~l~~~--~~~~V~~~~~~~l~~~~~~~~----------------~~~~y~~~l~L~~~I~pe~ 65 (139)
+..| ..+.+...+.+.+|+. .+++|.+++.+.+.+++.... ....|.-.+.|-..|+-++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 4667 6889999999999986 588999977633777655311 0113455667888888887
Q ss_pred ceEEecCCeEEEEEEecCCc
Q 032508 66 SKASVGLRNIHYLVKKAENK 85 (139)
Q Consensus 66 s~~~i~~~kvei~L~K~~~~ 85 (139)
-+..+...-+.|++.|..+.
T Consensus 164 ikA~~~nGVL~VvvpK~~~~ 183 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEPL 183 (196)
T ss_pred HHHHhhCCeEEEEEeccccc
Confidence 77778888888899887764
No 50
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=1.9e+02 Score=21.43 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=47.8
Q ss_pred EEEEEEcCC--CCcccEEEecCcEEEEEEEeCC--C-----CCcEEEEEecccccccCCceEEecC-CeEEEEEEecCC
Q 032508 16 VYITIDLPD--AQDVKLKLEPEGKFFFSATSGP--D-----KIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKKAEN 84 (139)
Q Consensus 16 V~ItI~l~~--~~~~~V~~~~~~~l~~~~~~~~--~-----~~~y~~~l~L~~~I~pe~s~~~i~~-~kvei~L~K~~~ 84 (139)
..|.+.+.. .++++|++..+ .|.+.++-.. + ...|.-...|=..|+|+.-+-.+.+ +.+.|...|..+
T Consensus 74 F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 74 FEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 445555654 46888888776 8999887521 1 1345556779999999998888855 678888777654
No 51
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.97 E-value=2.1e+02 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=23.8
Q ss_pred EEecccccccCCceEEecCCeEEEEEEecCCc
Q 032508 54 DIDLYDKVDVNESKASVGLRNIHYLVKKAENK 85 (139)
Q Consensus 54 ~l~L~~~I~pe~s~~~i~~~kvei~L~K~~~~ 85 (139)
+.+|-.+..|+.-++++.++++.+++.|+...
T Consensus 107 evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 107 EVKLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred EeeeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 44556677788888888888888888877543
No 52
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=31.81 E-value=1.6e+02 Score=19.55 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=30.6
Q ss_pred eEEEEEEcCCCCcccEEEecCcEEEEEEEeCCCCCcEEE-EEecccccccCCceEEe
Q 032508 15 RVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEV-DIDLYDKVDVNESKASV 70 (139)
Q Consensus 15 ~V~ItI~l~~~~~~~V~~~~~~~l~~~~~~~~~~~~y~~-~l~L~~~I~pe~s~~~i 70 (139)
.+-|-|+=+++...+|.++.. .+.+.-....++.+|.| .|++- ...|..-...+
T Consensus 15 ~LQLmvyG~nI~~~~v~i~~~-gV~i~~v~~~~npNYLFv~L~i~-~akpg~~~i~~ 69 (88)
T PF09087_consen 15 ELQLMVYGKNIASAEVSISYP-GVTIKKVVKTDNPNYLFVYLDIS-DAKPGTFTINF 69 (88)
T ss_dssp EEEEEEESTTGGGSEEEE-BT-TEEEEEEEE-SSTTEEEEEEEE--T--SEEEEEEE
T ss_pred cEEEEEecCCcccCEEEEeCC-CeEEEEEEecCCCCEEEEEEecC-CCCCcEEEEEE
Confidence 466777777778888888754 56665443335567866 45555 55555444444
No 53
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=28.14 E-value=17 Score=21.52 Aligned_cols=11 Identities=73% Similarity=1.573 Sum_probs=8.7
Q ss_pred eecCcccccCc
Q 032508 102 KVDWDKWIDED 112 (139)
Q Consensus 102 ~~Dwd~~~de~ 112 (139)
++||++|+.-+
T Consensus 17 kvdWd~wvSf~ 27 (49)
T PF06543_consen 17 KVDWDKWVSFD 27 (49)
T ss_pred ccchHHheeeC
Confidence 69999999543
No 54
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=22.91 E-value=4.9e+02 Score=22.44 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=17.2
Q ss_pred CCeEEEecCCeEEEEEEcCC
Q 032508 5 PTVKWAQRTDRVYITIDLPD 24 (139)
Q Consensus 5 P~~~W~Qt~~~V~ItI~l~~ 24 (139)
+.+.|+++.+.|+|.++++.
T Consensus 386 ~~~iy~~~~~~l~v~ly~~s 405 (520)
T PF07944_consen 386 PDYIYFRDDDGLYVNLYIPS 405 (520)
T ss_pred hhhheEecCCEEEEEEEcce
Confidence 46889999999999998884
No 55
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=21.83 E-value=2.3e+02 Score=18.11 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=27.4
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcccEEEecCcEEEEEEEeCCCCCcEEEEEe
Q 032508 4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDID 56 (139)
Q Consensus 4 ~P~~~W~Qt~~~V~ItI~l~~~~~~~V~~~~~~~l~~~~~~~~~~~~y~~~l~ 56 (139)
.|.|.||+....+.-.. ......-.... .. .|.|......++..|.++..
T Consensus 14 ~a~i~W~k~~~~l~~~~-~~~~~~~~~t~-~s-~L~~~~~~~Ddg~~~~C~A~ 63 (80)
T cd05885 14 AATLRWYRDRKELKGVI-SQQENGKTVSV-SN-TIRFPVDRKDDGAILSCEAS 63 (80)
T ss_pred CCeEEEEECCEECCCCc-ccccCCceEEE-EE-EEEEEeeeccCCcEEEEEEE
Confidence 35799999998764221 11111111222 22 57777665456777777653
Done!