Query 032513
Match_columns 139
No_of_seqs 146 out of 1069
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 15:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0605 SodA Superoxide dismut 100.0 7E-61 1.5E-65 372.4 13.5 133 1-138 70-202 (204)
2 PLN02471 superoxide dismutase 100.0 8.7E-60 1.9E-64 373.2 15.5 139 1-139 93-231 (231)
3 PRK10543 superoxide dismutase; 100.0 4.1E-59 8.9E-64 361.0 14.2 128 2-135 65-192 (193)
4 PTZ00078 Superoxide dismutase 100.0 1.6E-57 3.4E-62 352.2 14.5 132 2-138 60-191 (193)
5 PLN02184 superoxide dismutase 100.0 5.3E-57 1.1E-61 353.6 14.6 129 3-138 79-208 (212)
6 PLN02622 iron superoxide dismu 100.0 9.2E-57 2E-61 361.2 14.7 131 2-137 116-247 (261)
7 PRK10925 superoxide dismutase; 100.0 1.1E-56 2.5E-61 350.4 14.4 129 2-137 73-205 (206)
8 KOG0876 Manganese superoxide d 100.0 3.3E-56 7.2E-61 350.0 12.5 134 1-137 93-229 (234)
9 PLN02685 iron superoxide dismu 100.0 3.9E-55 8.6E-60 356.6 14.7 131 2-137 114-260 (299)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 2.3E-50 5E-55 285.1 12.4 105 28-134 2-106 (106)
11 PF13348 Y_phosphatase3C: Tyro 64.5 7.3 0.00016 24.5 2.5 19 32-50 33-51 (68)
12 PF12826 HHH_2: Helix-hairpin- 54.9 10 0.00022 23.9 1.9 33 30-62 12-44 (64)
13 PF09418 DUF2009: Protein of u 52.1 21 0.00045 31.5 3.9 32 31-62 381-414 (458)
14 PF05416 Peptidase_C37: Southa 49.9 11 0.00023 33.3 1.8 21 58-82 377-397 (535)
15 PF08025 Antimicrobial_3: Spid 48.0 23 0.00049 20.1 2.3 25 31-55 7-31 (37)
16 KOG0394 Ras-related GTPase [Ge 33.9 25 0.00055 27.7 1.5 20 37-56 93-112 (210)
17 PF01666 DX: DX module; Inter 30.4 60 0.0013 21.5 2.7 24 60-83 15-38 (76)
18 PF12776 Myb_DNA-bind_3: Myb/S 29.7 1.5E+02 0.0033 19.2 4.7 41 32-75 36-86 (96)
19 PF15217 TSC21: TSC21 family 25.5 16 0.00035 27.7 -0.9 22 97-118 12-34 (180)
20 PF09249 tRNA_NucTransf2: tRNA 25.3 79 0.0017 22.7 2.7 22 29-50 25-46 (114)
21 PF03789 ELK: ELK domain ; In 25.2 53 0.0011 16.8 1.3 20 33-52 2-22 (22)
22 PF08887 GAD-like: GAD-like do 24.1 1.8E+02 0.0039 20.5 4.3 54 12-71 5-59 (109)
23 PLN02447 1,4-alpha-glucan-bran 24.0 2.3E+02 0.0049 26.8 6.0 52 32-83 85-136 (758)
24 PF13185 GAF_2: GAF domain; PD 22.1 1.6E+02 0.0035 19.7 3.8 35 44-80 4-40 (148)
25 cd08351 ChaP_like ChaP, an enz 21.5 2.2E+02 0.0048 18.9 4.4 37 44-80 71-121 (123)
26 PF12872 OST-HTH: OST-HTH/LOTU 21.1 70 0.0015 19.9 1.6 23 44-66 3-26 (74)
27 COG2331 Uncharacterized protei 20.1 38 0.00081 22.9 0.2 24 46-71 42-65 (82)
No 1
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-61 Score=372.39 Aligned_cols=133 Identities=44% Similarity=0.881 Sum_probs=125.3
Q ss_pred CccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEe
Q 032513 1 MVICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 1 ~~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t 80 (139)
|.||+|||+||+|||++|+|. ++++.|+|.|+++|+++|||+|+||++|+++|.++|||||+|||+|+. ++|.|++|
T Consensus 70 ~~nn~~gh~NH~~fw~~l~p~--~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~-~kL~i~~t 146 (204)
T COG0605 70 LFNNAGGHWNHSLFWENLSPG--GGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPD-GKLEIVST 146 (204)
T ss_pred HHhcchhhhhHHHHHhhcCCC--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECCC-CcEEEEec
Confidence 478999999999999999994 366789999999999999999999999999999999999999999986 69999999
Q ss_pred cCCCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032513 81 ANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138 (139)
Q Consensus 81 ~n~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 138 (139)
+||+.+.+.+ .+|||||||||||||+||+|+|++||++||++|||++|++||++++
T Consensus 147 ~n~~~p~~~~--~~PiL~lDvWEHAYYldY~N~R~~Yv~afwnvVNW~~V~~r~~~a~ 202 (204)
T COG0605 147 YNQDTPLMWG--SVPLLGLDVWEHAYYLDYGNRRPDYVEAFWNVVNWDEVEERFEAAK 202 (204)
T ss_pred cCCCCcccCC--CCceEEecchHHHHHHHhccCcHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998776666 7999999999999999999999999999999999999999999875
No 2
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=8.7e-60 Score=373.24 Aligned_cols=139 Identities=84% Similarity=1.465 Sum_probs=127.0
Q ss_pred CccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEe
Q 032513 1 MVICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 1 ~~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t 80 (139)
+.||+|||+||+|||++|+|.+.+++.+|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+++|.|++|
T Consensus 93 ~~~n~gg~~NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~~~~~L~i~~t 172 (231)
T PLN02471 93 IKFNGGGHVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDKELKKLVVETT 172 (231)
T ss_pred hhhHHHHHHhHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeCCCCeEEEEee
Confidence 36899999999999999999754555567899999999999999999999999999999999999999987899999999
Q ss_pred cCCCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhhcCCHHHHHHHHHhhCC
Q 032513 81 ANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 139 (139)
Q Consensus 81 ~n~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~~inW~~v~~r~~~~~~ 139 (139)
+||+|++..+...+|||||||||||||+||+|+|++||++||++|||++||+||+++|.
T Consensus 173 ~n~d~~~~~~~~~~PiL~iDvWEHAYylDY~n~R~~Yi~~~w~~inW~~v~~r~~~~~~ 231 (231)
T PLN02471 173 ANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYEKECN 231 (231)
T ss_pred cCCCCCcccCCCCceEEEeechhhHhHHHhccCHHHHHHHHHHccCHHHHHHHHHhhcC
Confidence 99998754432258999999999999999999999999999999999999999999873
No 3
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=4.1e-59 Score=361.01 Aligned_cols=128 Identities=34% Similarity=0.727 Sum_probs=118.7
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEec
Q 032513 2 VICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~ 81 (139)
.+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||.|+ +|+|.|++|+
T Consensus 65 fnna~g~~NH~lfw~~L~p---~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-~~~L~I~~t~ 140 (193)
T PRK10543 65 FNNAAQVWNHTFYWNCLAP---NAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-DGKLAIVSTS 140 (193)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCCEEEEecc
Confidence 4677789999999999999 44557899999999999999999999999999999999999999997 5899999999
Q ss_pred CCCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhhcCCHHHHHHHHH
Q 032513 82 NQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 135 (139)
Q Consensus 82 n~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~~inW~~v~~r~~ 135 (139)
||+++...+ .+|||||||||||||+||+|+|++||++||++|||++|++||+
T Consensus 141 n~~~p~~~~--~~PlL~lDvWEHAYyldY~n~r~~Yv~~~w~~inW~~v~~r~~ 192 (193)
T PRK10543 141 NAGTPLTTD--ATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLA 192 (193)
T ss_pred CCCCCcCCC--CEeEEEEecchhhhHHHhccCHHHHHHHHHhccCHHHHHHHhc
Confidence 998655555 7999999999999999999999999999999999999999995
No 4
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=1.6e-57 Score=352.20 Aligned_cols=132 Identities=33% Similarity=0.649 Sum_probs=120.1
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEec
Q 032513 2 VICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~ 81 (139)
.+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||||||.+. +|+|.|++|+
T Consensus 60 ~n~a~g~~NH~lfw~~L~p---~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~-~~~L~i~~t~ 135 (193)
T PTZ00078 60 FNNAAQIWNHNFYWLSMGP---NGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKN-DGKLEIVQTH 135 (193)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCcEEEEecc
Confidence 5688899999999999999 45567999999999999999999999999999999999999999854 6899999999
Q ss_pred CCCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032513 82 NQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138 (139)
Q Consensus 82 n~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 138 (139)
|++++.+.+ ..+|||||||||||||+||+|+|++||++||++|||++||+||++++
T Consensus 136 n~~~p~~~~-~~~PlL~lDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 191 (193)
T PTZ00078 136 DAGNPIKDN-TGKPLLTCDIWEHAYYIDYRNDRASYVNSWWNKVNWDFANKNLKKLM 191 (193)
T ss_pred CCCCCccCC-CCceEEEeccchhhhHHHHccCHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 997543322 16899999999999999999999999999999999999999999875
No 5
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=5.3e-57 Score=353.62 Aligned_cols=129 Identities=35% Similarity=0.687 Sum_probs=117.9
Q ss_pred cchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEecC
Q 032513 3 ICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN 82 (139)
Q Consensus 3 fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n 82 (139)
+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ ++|.|++|+|
T Consensus 79 nnagg~~NH~~fw~~L~p---~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~--~~L~i~~t~n 153 (212)
T PLN02184 79 NNAAQAWNHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN--EKLKVVKTPN 153 (212)
T ss_pred HhHHHHHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEeecC
Confidence 457889999999999999 45567999999999999999999999999999999999999999985 7899999999
Q ss_pred CCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhh-cCCHHHHHHHHHhhC
Q 032513 83 QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKEC 138 (139)
Q Consensus 83 ~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~-~inW~~v~~r~~~~~ 138 (139)
++.+...| .+|||||||||||||+||+|+|++||++||+ +|||++||+||.++.
T Consensus 154 ~~~P~~~~--~~PlL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~ 208 (212)
T PLN02184 154 AVNPLVLG--SFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAK 208 (212)
T ss_pred CCCCccCC--CeeEEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHh
Confidence 96444456 6999999999999999999999999999996 899999999998753
No 6
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=9.2e-57 Score=361.17 Aligned_cols=131 Identities=36% Similarity=0.671 Sum_probs=121.1
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEec
Q 032513 2 VICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~ 81 (139)
.+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+|+|.|++|+
T Consensus 116 fnna~g~~NH~~Fw~~L~P---~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~~~g~L~I~~t~ 192 (261)
T PLN02622 116 FNNAAQVWNHDFFWESMQP---GGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREERRLEVVKTS 192 (261)
T ss_pred HHHHHhHHHHHHHHHccCC---CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEecC
Confidence 4568899999999999999 5556789999999999999999999999999999999999999999988999999999
Q ss_pred CCCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhh-cCCHHHHHHHHHhh
Q 032513 82 NQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKE 137 (139)
Q Consensus 82 n~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~-~inW~~v~~r~~~~ 137 (139)
||+.+...| .+|||||||||||||+||+|+|++||++||+ +|||++||+||.++
T Consensus 193 N~~~Pl~~~--~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v~~R~~~~ 247 (261)
T PLN02622 193 NAINPLVWD--DIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARA 247 (261)
T ss_pred CCCCCccCC--CEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHHHHHHHHh
Confidence 997554456 6999999999999999999999999999999 69999999999876
No 7
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=1.1e-56 Score=350.41 Aligned_cols=129 Identities=42% Similarity=0.824 Sum_probs=116.9
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEec
Q 032513 2 VICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~ 81 (139)
++|+|||+||+|||++|+| + +.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ ++|.|++|+
T Consensus 73 ~nna~g~~NH~~fw~~L~P---~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~--~~L~i~~t~ 145 (206)
T PRK10925 73 RNNAGGHANHSLFWKGLKK---G--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG--DKLAVVSTA 145 (206)
T ss_pred HHHHHHHHHHHHHHhccCC---C--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEeC--CEEEEEecc
Confidence 4789999999999999998 3 26889999999999999999999999999999999999999984 799999999
Q ss_pred CCCccccC----CCCCceEEEeccCchhhHhhhcCChHHHHHHHhhcCCHHHHHHHHHhh
Q 032513 82 NQDPLVTK----APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 137 (139)
Q Consensus 82 n~~p~~~~----g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~~inW~~v~~r~~~~ 137 (139)
||+.+.+. |...+|||||||||||||+||+|+|++||++||++|||++|++||+++
T Consensus 146 N~~~p~~~~~~~~~~~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~~inW~~v~~r~~~~ 205 (206)
T PRK10925 146 NQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAK 205 (206)
T ss_pred CCCCCccccccccCCCceeEEEechHHHhHHHHccCHHHHHHHHHhccCHHHHHHHHHhc
Confidence 99744332 112489999999999999999999999999999999999999999875
No 8
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-56 Score=349.97 Aligned_cols=134 Identities=53% Similarity=0.988 Sum_probs=123.0
Q ss_pred CccchHHHH-hHHHHhhccCCCCCCCCCCCchh-HHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEE
Q 032513 1 MVICHAGHV-NHSIFWKNLAPVHEGGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVE 78 (139)
Q Consensus 1 ~~fn~~g~~-NH~~f~~~l~p~~~~~~~~p~~~-L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~ 78 (139)
.+||+|||+ ||+|||++|.| ++++.|.+. |+++|+++|||+|+|+++|++++.++|||||+|||++++.++|.|+
T Consensus 93 ~~Fn~~~~~~Nh~fFw~~l~p---~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~ 169 (234)
T KOG0876|consen 93 PKFNGAGHIYNHSFFWENLAP---PGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFIL 169 (234)
T ss_pred hhcCCccccccchhhhhhccC---CCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEE
Confidence 379999997 99999999999 444456555 9999999999999999999999999999999999999987899999
Q ss_pred EecCC-CccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhhcCCHHHHHHHHHhh
Q 032513 79 TTANQ-DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 137 (139)
Q Consensus 79 ~t~n~-~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~~inW~~v~~r~~~~ 137 (139)
+|+|| ||+.....+.+|||||||||||||+||+|+|++||++||++|||++|++||+++
T Consensus 170 ~T~Na~~P~~~~t~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd~inW~~v~~R~~~~ 229 (234)
T KOG0876|consen 170 TTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWDVINWKVVSERFEAA 229 (234)
T ss_pred ecCCCCCCeeccCCCccceEEEecchhHhHHHhccchHHHHHHHHHHhcHHHHHHHHHHh
Confidence 99999 998755434899999999999999999999999999999999999999999965
No 9
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=3.9e-55 Score=356.61 Aligned_cols=131 Identities=37% Similarity=0.725 Sum_probs=119.1
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeC-----------
Q 032513 2 VICHAGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDT----------- 70 (139)
Q Consensus 2 ~fn~~g~~NH~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~----------- 70 (139)
.+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+++
T Consensus 114 fNnaggh~NH~fFWe~L~P---~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np 190 (299)
T PLN02685 114 FNNAAQAWNHEFFWESMKP---GGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNP 190 (299)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccc
Confidence 3457789999999999999 45567999999999999999999999999999999999999999975
Q ss_pred ----CCCeeEEEEecCCCccccCCCCCceEEEeccCchhhHhhhcCChHHHHHHHhh-cCCHHHHHHHHHhh
Q 032513 71 ----EFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKE 137 (139)
Q Consensus 71 ----~~~~L~i~~t~n~~p~~~~g~~~~PlL~iDvwEHAYy~dY~n~r~~Yi~~~w~-~inW~~v~~r~~~~ 137 (139)
.+++|.|++++|++.+...| .+|||||||||||||+||+|+|++||++||+ +|||++|++||.++
T Consensus 191 ~~~~~~~~L~i~~t~n~d~pl~~~--~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~vINW~~V~~R~~~a 260 (299)
T PLN02685 191 CPSEEDKKLVVVKSPNAVNPLVWD--YSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESA 260 (299)
T ss_pred cccccCCceeEEeccCCCCCccCC--CEeEEEEecchhhhHHHhccChHHHHHHHHHcccCHHHHHHHHHHH
Confidence 35789999999997554456 7999999999999999999999999999998 69999999999875
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=2.3e-50 Score=285.07 Aligned_cols=105 Identities=42% Similarity=0.835 Sum_probs=99.2
Q ss_pred CCchhHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEecCCCccccCCCCCceEEEeccCchhhH
Q 032513 28 PPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 107 (139)
Q Consensus 28 ~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~~p~~~~g~~~~PlL~iDvwEHAYy 107 (139)
.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+++|.|++++|++++...| .+|||||||||||||
T Consensus 2 ~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~~~p~~~~--~~Pll~iD~weHaY~ 79 (106)
T PF02777_consen 2 KPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDPSDGKLSIISTPNHDTPIIWG--LIPLLCIDVWEHAYY 79 (106)
T ss_dssp S-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTTEEEEEEEETTTBGGGGT--EEEEEEEE-SGGGTH
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeeccccceeeeeeecccccccchh--hccchhhhhhHHHHH
Confidence 689999999999999999999999999999999999999999889999999999998666666 899999999999999
Q ss_pred hhhcCChHHHHHHHhhcCCHHHHHHHH
Q 032513 108 LQYKNVKPDYLKNIWNVMNWKYASDVY 134 (139)
Q Consensus 108 ~dY~n~r~~Yi~~~w~~inW~~v~~r~ 134 (139)
+||+++|++||++||++|||++||+||
T Consensus 80 ~dy~~~r~~Yv~~~~~~inW~~v~~r~ 106 (106)
T PF02777_consen 80 LDYGNKRADYVEAFWNVINWEVVEKRY 106 (106)
T ss_dssp HHHTTHHHHHHHHHGGGBBHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHcCHHHHHhhC
Confidence 999999999999999999999999997
No 11
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=64.49 E-value=7.3 Score=24.47 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.5
Q ss_pred hHHHHHHhhcCCHHHHHHH
Q 032513 32 SLGWAIDTHFGSLEALIQK 50 (139)
Q Consensus 32 ~L~~~I~~~FGS~d~fk~~ 50 (139)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4567899999999999843
No 12
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=54.92 E-value=10 Score=23.90 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=21.3
Q ss_pred chhHHHHHHhhcCCHHHHHHHHHHHhhcCccCc
Q 032513 30 HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSG 62 (139)
Q Consensus 30 ~~~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsG 62 (139)
...-++.|.+.|||+|++++.=.+.-..+.|-|
T Consensus 12 G~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 12 GEKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp -HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred cHHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 456888999999999999866555444454444
No 13
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=52.10 E-value=21 Score=31.47 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=24.2
Q ss_pred hhHHHHHHhhcCCHHHHHHHHHHHh--hcCccCc
Q 032513 31 SSLGWAIDTHFGSLEALIQKMSAEG--AALQGSG 62 (139)
Q Consensus 31 ~~L~~~I~~~FGS~d~fk~~f~~~a--~~~~GsG 62 (139)
+.|++-|+..|||+++++.....-. -+.-|||
T Consensus 381 ~~l~~yi~~~~g~~~~l~~~IL~DfFrh~FDGSG 414 (458)
T PF09418_consen 381 PHLRNYIESEFGSVEELKKTILQDFFRHAFDGSG 414 (458)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 5688999999999999998766554 1223777
No 14
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=49.87 E-value=11 Score=33.28 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.8
Q ss_pred CccCceEEEEEeCCCCeeEEEEecC
Q 032513 58 LQGSGWVWLGLDTEFKRLVVETTAN 82 (139)
Q Consensus 58 ~~GsGW~wLv~d~~~~~L~i~~t~n 82 (139)
.|||||.+.|- ..|.|.+|+-
T Consensus 377 ~fGsGWGfWVS----~~lfITttHV 397 (535)
T PF05416_consen 377 KFGSGWGFWVS----PTLFITTTHV 397 (535)
T ss_dssp EETTEEEEESS----SSEEEEEGGG
T ss_pred ecCCceeeeec----ceEEEEeeee
Confidence 58999999883 5699988853
No 15
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=48.03 E-value=23 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.4
Q ss_pred hhHHHHHHhhcCCHHHHHHHHHHHh
Q 032513 31 SSLGWAIDTHFGSLEALIQKMSAEG 55 (139)
Q Consensus 31 ~~L~~~I~~~FGS~d~fk~~f~~~a 55 (139)
+++.+.|.+-|-.+-..+++|+++.
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~as 31 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEAS 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 5788999999999999999999875
No 16
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=33.90 E-value=25 Score=27.73 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHhhcCCHHHHHHHHHHHhh
Q 032513 37 IDTHFGSLEALIQKMSAEGA 56 (139)
Q Consensus 37 I~~~FGS~d~fk~~f~~~a~ 56 (139)
+.++|+++++|+++|...|.
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred ChhhhccHHHHHHHHHHhcC
Confidence 34899999999999999985
No 17
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=30.38 E-value=60 Score=21.46 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred cCceEEEEEeCCCCeeEEEEecCC
Q 032513 60 GSGWVWLGLDTEFKRLVVETTANQ 83 (139)
Q Consensus 60 GsGW~wLv~d~~~~~L~i~~t~n~ 83 (139)
=++|.|--.|+.+++|.|+...+-
T Consensus 15 p~~~~~~fCdp~t~ki~imG~~~~ 38 (76)
T PF01666_consen 15 PPNFSFAFCDPETGKIVIMGEENF 38 (76)
T ss_pred CCCcceEEECCcCCeEEEEeeecc
Confidence 368999999999999999987654
No 18
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=29.72 E-value=1.5e+02 Score=19.21 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=27.8
Q ss_pred hHHHHHHhhcCC----------HHHHHHHHHHHhhcCccCceEEEEEeCCCCee
Q 032513 32 SLGWAIDTHFGS----------LEALIQKMSAEGAALQGSGWVWLGLDTEFKRL 75 (139)
Q Consensus 32 ~L~~~I~~~FGS----------~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L 75 (139)
.+.+++++.+|. ++.+|+.+.....-.-.|| +.+|+.++.+
T Consensus 36 ~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~~sg---~gwd~~~~~i 86 (96)
T PF12776_consen 36 NIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRNHSG---FGWDPETGMI 86 (96)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHcCCC---ceEcCCCCeE
Confidence 477777777773 6677777777766556778 4557766544
No 19
>PF15217 TSC21: TSC21 family
Probab=25.46 E-value=16 Score=27.68 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=18.6
Q ss_pred EEeccCchhhHhhhc-CChHHHH
Q 032513 97 LGIDVWEHAYYLQYK-NVKPDYL 118 (139)
Q Consensus 97 L~iDvwEHAYy~dY~-n~r~~Yi 118 (139)
+-+|++..+|++||+ -+|.+|-
T Consensus 12 VDldiYqSSyMvdykpygk~kys 34 (180)
T PF15217_consen 12 VDLDIYQSSYMVDYKPYGKHKYS 34 (180)
T ss_pred cchhhhhhhceeecccccccccc
Confidence 468999999999998 6777775
No 20
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=25.34 E-value=79 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.2
Q ss_pred CchhHHHHHHhhcCCHHHHHHH
Q 032513 29 PHSSLGWAIDTHFGSLEALIQK 50 (139)
Q Consensus 29 p~~~L~~~I~~~FGS~d~fk~~ 50 (139)
=+|-|.+.+--.||||+++.+.
T Consensus 25 FSGYL~ELLii~yGsF~~~l~~ 46 (114)
T PF09249_consen 25 FSGYLCELLIIHYGSFENVLEA 46 (114)
T ss_dssp B-HHHHHHHHHHHSSHHHHHHH
T ss_pred chHHHHHHHHHHHCCHHHHHHH
Confidence 3789999999999999988754
No 21
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=25.22 E-value=53 Score=16.81 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHHhhcC-CHHHHHHHHH
Q 032513 33 LGWAIDTHFG-SLEALIQKMS 52 (139)
Q Consensus 33 L~~~I~~~FG-S~d~fk~~f~ 52 (139)
|+..+-+.|+ .+..++++|.
T Consensus 2 LK~~LlrkY~g~i~~Lr~Ef~ 22 (22)
T PF03789_consen 2 LKHQLLRKYSGYISSLRQEFS 22 (22)
T ss_pred HHHHHHHHHhHhHHHHHHHhC
Confidence 5667777775 4788888873
No 22
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=24.07 E-value=1.8e+02 Score=20.46 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=36.6
Q ss_pred HHHhhccCCCCCCCCCCCchhHHHHHHhhcC-CHHHHHHHHHHHhhcCccCceEEEEEeCC
Q 032513 12 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFG-SLEALIQKMSAEGAALQGSGWVWLGLDTE 71 (139)
Q Consensus 12 ~~f~~~l~p~~~~~~~~p~~~L~~~I~~~FG-S~d~fk~~f~~~a~~~~GsGW~wLv~d~~ 71 (139)
+.|.+.+.|+.. ....|+.. |++-=| -.+.+.+...+..-+.++.|-.|+| ||+
T Consensus 5 e~fle~fg~~~~-~~~vp~~~----I~kyk~~lP~~Ll~~W~~~G~g~~~dG~f~~v-nP~ 59 (109)
T PF08887_consen 5 EFFLEKFGPPID-RQEVPEES----IEKYKGKLPDELLEYWKEYGFGGYGDGLFWLV-NPD 59 (109)
T ss_pred HHHHHHcCCCcC-CCcCCHHH----HHHhcCCCcHHHHHHHHHcCCchhcCcEEEEE-CHH
Confidence 567888876432 22234332 433223 2889999999999999999999987 553
No 23
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=23.97 E-value=2.3e+02 Score=26.76 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=39.9
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHhhcCccCceEEEEEeCCCCeeEEEEecCC
Q 032513 32 SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQ 83 (139)
Q Consensus 32 ~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~ 83 (139)
..++.|++.-||+++|-+.-.......-..|+.+-|+-|...++.|+..-|.
T Consensus 85 ~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN~ 136 (758)
T PLN02447 85 RRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDFNN 136 (758)
T ss_pred HHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEecCC
Confidence 3566888889999999886666554444469999999998888988876553
No 24
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=22.07 E-value=1.6e+02 Score=19.67 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhcCccC--ceEEEEEeCCCCeeEEEEe
Q 032513 44 LEALIQKMSAEGAALQGS--GWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 44 ~d~fk~~f~~~a~~~~Gs--GW~wLv~d~~~~~L~i~~t 80 (139)
++++.+.....+..++|+ |+++|+ |+++ .+.....
T Consensus 4 ~~ell~~~~~~~~~~~~~~~~~i~l~-d~~~-~~~~~~~ 40 (148)
T PF13185_consen 4 LEELLQQILDALLELTGADAGAIYLY-DPDG-QLLPVAA 40 (148)
T ss_dssp HHHHHHHHHHHHHHHHS-SEEEEEEE-ETTS-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEE-ECCC-cEEEEEE
Confidence 345555545555444544 666677 8754 4444333
No 25
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.52 E-value=2.2e+02 Score=18.94 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcC--------------ccCceEEEEEeCCCCeeEEEEe
Q 032513 44 LEALIQKMSAEGAAL--------------QGSGWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 44 ~d~fk~~f~~~a~~~--------------~GsGW~wLv~d~~~~~L~i~~t 80 (139)
++++.+.+.+....+ .+-|....+.||+...+.+++.
T Consensus 71 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 71 FDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 788888888876442 2345788888997666777765
No 26
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=21.11 E-value=70 Score=19.86 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhcCcc-CceEEE
Q 032513 44 LEALIQKMSAEGAALQG-SGWVWL 66 (139)
Q Consensus 44 ~d~fk~~f~~~a~~~~G-sGW~wL 66 (139)
.+.+++.+.+.-.+..+ .||++|
T Consensus 3 ~~~~~~~l~~ll~~~~~~~g~v~l 26 (74)
T PF12872_consen 3 LEELKKLLRELLESQKGEDGWVSL 26 (74)
T ss_dssp -HHHHHHHHHHHHHTCTTTSSEEH
T ss_pred HHHHHHHHHHHHHhCcCCCceEEH
Confidence 34455555555434444 456655
No 27
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.11 E-value=38 Score=22.86 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCccCceEEEEEeCC
Q 032513 46 ALIQKMSAEGAALQGSGWVWLGLDTE 71 (139)
Q Consensus 46 ~fk~~f~~~a~~~~GsGW~wLv~d~~ 71 (139)
.||+.|.+.+...-|||| -|-|.+
T Consensus 42 ~~kk~l~~vgi~fKGSGf--YvtDsR 65 (82)
T COG2331 42 RLKKLLNAVGIVFKGSGF--YVTDSR 65 (82)
T ss_pred HHHHhhccceEEEecceE--EEeccc
Confidence 688899998887679995 566654
Done!