BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032514
MMSSGSSSCCSCRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRA
SVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQ
VPSRNTTCVICAGKVVWFT

High Scoring Gene Products

Symbol, full name Information P value
AT2G24860 protein from Arabidopsis thaliana 5.8e-34

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032514
        (139 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2047426 - symbol:AT2G24860 species:3702 "Arabi...   369  5.8e-34   1


>TAIR|locus:2047426 [details] [associations]
            symbol:AT2G24860 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0031072 "heat
            shock protein binding" evidence=IEA] [GO:0051082 "unfolded protein
            binding" evidence=IEA] InterPro:IPR001305 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC006585 SUPFAM:SSF57938
            EMBL:AF410290 EMBL:AY097372 EMBL:AY088871 EMBL:AK176284
            IPI:IPI00520827 PIR:D84641 RefSeq:NP_565578.1 UniGene:At.13979
            ProteinModelPortal:Q9SK46 SMR:Q9SK46 IntAct:Q9SK46 STRING:Q9SK46
            EnsemblPlants:AT2G24860.1 GeneID:817023 KEGG:ath:AT2G24860
            TAIR:At2g24860 eggNOG:NOG286430 HOGENOM:HOG000153500
            InParanoid:Q9SK46 OMA:GHVECKW PhylomeDB:Q9SK46
            ProtClustDB:CLSN2688396 ArrayExpress:Q9SK46 Genevestigator:Q9SK46
            Uniprot:Q9SK46
        Length = 144

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 69/100 (69%), Positives = 79/100 (79%)

Query:    35 SPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSC 94
             SP R+   G  +   RR      V+AS VDS ESSSNF KRM+QAW+ISQQP PV CSSC
Sbjct:    22 SP-RITKLGF-VPVVRRFPATTTVKASAVDSPESSSNFAKRMDQAWIISQQPSPVGCSSC 79

Query:    95 NSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK 134
             NS GH++CKWCAGTGFFILGDNMLCQVPSRNT+CVIC+G+
Sbjct:    80 NSKGHVECKWCAGTGFFILGDNMLCQVPSRNTSCVICSGQ 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.132   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      139       129   0.00091  102 3  11 22  0.47    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  144 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.61u 0.08s 14.69t   Elapsed:  00:00:03
  Total cpu time:  14.61u 0.08s 14.69t   Elapsed:  00:00:03
  Start:  Thu May  9 13:45:28 2013   End:  Thu May  9 13:45:31 2013

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