BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032514
         (139 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8EXP6|DNAJ_RICCK Chaperone protein DnaJ OS=Rickettsia canadensis (strain McKiel)
           GN=dnaJ PE=3 SV=1
          Length = 375

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 73  VKRMEQAWLISQQPRPVSCSSCNSNGHI---DCKWCAGTGFFILGDNMLCQVPS 123
           V R++Q +   +Q    +C  C  NG +    CK C G G +    N+L  +P+
Sbjct: 176 VTRIQQGFFTIEQ----TCHKCQGNGQMIKNPCKKCHGMGRYHKQRNLLVNIPA 225


>sp|B3QZE2|BCHB_CHLT3 Light-independent protochlorophyllide reductase subunit B
           OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
           GN=bchB PE=3 SV=1
          Length = 537

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 44  TSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWL 81
           + +TS RR +  +GV+ +VV  Y +    +K++  AWL
Sbjct: 169 SDVTSLRRMMATLGVKINVVAPYSAGLADLKKLPAAWL 206


>sp|Q3B6C7|BCHB_PELLD Light-independent protochlorophyllide reductase subunit B
           OS=Pelodictyon luteolum (strain DSM 273) GN=bchB PE=3
           SV=1
          Length = 525

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 45  SITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWL 81
           ++TS RR +  +GV+ +VV  + +    +KR+ +AWL
Sbjct: 171 NLTSIRRLLTTLGVKVNVVAPWGAGIADLKRLPEAWL 207


>sp|Q84BU3|DNAJ_LACAC Chaperone protein DnaJ OS=Lactobacillus acidophilus (strain ATCC
           700396 / NCK56 / N2 / NCFM) GN=dnaJ PE=3 SV=1
          Length = 384

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 87  RPVSCSSCNSNG-----H-IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136
           R  +C +C  NG     H I C  C GTG   +    +  +  R TTC  C G+ V
Sbjct: 150 RDETCETCGGNGCEKGTHPITCDKCHGTGVMTVTQQSMLGMIRRQTTCDKCNGRGV 205


>sp|Q09221|CPNA2_CAEEL Copine family protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=4
          Length = 7705

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 43   GTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQA 79
            GT I   RR+   + VRAS++ +  S+SNF K +  +
Sbjct: 1876 GTQIQEIRRATAVMSVRASLLLTISSNSNFSKNISDS 1912


>sp|A0RU76|SYT_CENSY Threonine--tRNA ligase OS=Cenarchaeum symbiosum (strain A) GN=thrS
           PE=3 SV=1
          Length = 615

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 35  SPM--RVVPRGTSI----TSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWL 81
           SP+  R++P G  +    T   + + G G+RA V D  ES    ++  E+ W+
Sbjct: 499 SPVQARIIPVGEELVRNATELAKEMAGHGIRADVDDRNESMGKRIREAEKEWV 551


>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
           subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
          Length = 1434

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 51  RSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHI--DCK 103
           + V G G +A V+    S  N V  M Q      Q + V C +C   GHI  +C+
Sbjct: 351 QGVGGPGHKARVLAEAMSQVNSVTVMMQKGNFKNQRKTVKCFNCGKEGHIAKNCR 405


>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
           subtype B (isolate OYI) GN=gag PE=3 SV=3
          Length = 499

 Score = 28.9 bits (63), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 51  RSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHI 100
           + V G G +A V+    S  N V  M Q      Q + V C +C   GHI
Sbjct: 351 QGVGGPGHKARVLAEAMSQVNSVTVMMQKGNFKNQRKTVKCFNCGKEGHI 400


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.130    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,803,052
Number of Sequences: 539616
Number of extensions: 1780403
Number of successful extensions: 5038
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5024
Number of HSP's gapped (non-prelim): 27
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)