Query 032514
Match_columns 139
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 15:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 97.1 0.00022 4.7E-09 53.2 1.3 28 85-112 38-65 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.8 0.00031 6.8E-09 46.2 -0.2 38 100-137 16-53 (66)
3 PRK14288 chaperone protein Dna 96.2 0.0039 8.5E-08 52.5 2.9 23 88-110 140-167 (369)
4 PRK14278 chaperone protein Dna 96.2 0.0035 7.6E-08 52.9 2.5 12 126-137 197-208 (378)
5 PRK10767 chaperone protein Dna 96.1 0.0033 7.1E-08 52.5 2.0 27 86-112 140-172 (371)
6 PRK14285 chaperone protein Dna 96.1 0.0034 7.4E-08 52.7 2.0 47 86-136 144-196 (365)
7 PRK14301 chaperone protein Dna 96.0 0.0042 9.2E-08 52.3 2.2 26 86-111 142-173 (373)
8 TIGR02349 DnaJ_bact chaperone 96.0 0.0037 7.9E-08 51.7 1.7 30 86-115 141-176 (354)
9 PRK14298 chaperone protein Dna 95.9 0.004 8.7E-08 52.7 1.9 12 126-137 199-210 (377)
10 PRK14286 chaperone protein Dna 95.9 0.0049 1.1E-07 52.0 2.2 26 86-111 148-179 (372)
11 PRK14285 chaperone protein Dna 95.9 0.0044 9.5E-08 52.1 1.9 39 87-137 162-211 (365)
12 PRK14280 chaperone protein Dna 95.9 0.0031 6.7E-08 53.1 0.8 29 86-114 141-175 (376)
13 PRK14282 chaperone protein Dna 95.8 0.0061 1.3E-07 51.1 2.4 27 86-112 150-182 (369)
14 PF00684 DnaJ_CXXCXGXG: DnaJ c 95.8 0.0085 1.8E-07 39.4 2.6 40 85-135 12-66 (66)
15 PRK14279 chaperone protein Dna 95.8 0.0064 1.4E-07 51.7 2.5 27 86-112 171-203 (392)
16 PRK14294 chaperone protein Dna 95.8 0.0056 1.2E-07 51.3 2.0 25 87-111 143-173 (366)
17 PRK14300 chaperone protein Dna 95.8 0.0065 1.4E-07 51.1 2.4 27 86-112 143-175 (372)
18 PRK14290 chaperone protein Dna 95.7 0.0087 1.9E-07 50.1 3.0 38 88-137 165-217 (365)
19 TIGR02349 DnaJ_bact chaperone 95.7 0.0065 1.4E-07 50.2 2.1 38 88-137 160-212 (354)
20 COG0484 DnaJ DnaJ-class molecu 95.7 0.0082 1.8E-07 52.5 2.7 30 86-115 140-175 (371)
21 PRK14276 chaperone protein Dna 95.6 0.0039 8.5E-08 52.5 0.6 27 86-112 144-176 (380)
22 PRK14280 chaperone protein Dna 95.6 0.0066 1.4E-07 51.1 1.9 39 87-137 159-212 (376)
23 PRK14284 chaperone protein Dna 95.6 0.0061 1.3E-07 51.6 1.6 12 126-137 212-223 (391)
24 PRK14277 chaperone protein Dna 95.6 0.0072 1.6E-07 51.1 2.0 27 86-112 153-185 (386)
25 PRK14296 chaperone protein Dna 95.5 0.0093 2E-07 50.4 2.4 27 86-112 147-179 (372)
26 PRK14287 chaperone protein Dna 95.4 0.0053 1.1E-07 51.7 0.7 27 86-112 136-168 (371)
27 PRK14281 chaperone protein Dna 95.4 0.013 2.8E-07 49.9 2.8 11 127-137 221-231 (397)
28 PRK14283 chaperone protein Dna 95.2 0.013 2.9E-07 49.3 2.3 27 86-112 144-176 (378)
29 PRK14276 chaperone protein Dna 95.2 0.011 2.3E-07 50.0 1.8 39 87-137 162-215 (380)
30 COG1107 Archaea-specific RecJ- 95.1 0.014 3.1E-07 55.1 2.5 46 89-137 3-65 (715)
31 PRK14295 chaperone protein Dna 95.1 0.015 3.2E-07 49.5 2.3 26 86-111 164-195 (389)
32 PRK14296 chaperone protein Dna 94.9 0.011 2.4E-07 49.9 1.2 39 87-137 165-218 (372)
33 PTZ00037 DnaJ_C chaperone prot 94.9 0.021 4.5E-07 49.7 2.9 25 86-110 148-177 (421)
34 PRK10767 chaperone protein Dna 94.9 0.017 3.6E-07 48.3 2.2 39 87-137 158-207 (371)
35 PRK14279 chaperone protein Dna 94.8 0.016 3.4E-07 49.4 1.8 39 87-137 189-238 (392)
36 PRK14297 chaperone protein Dna 94.8 0.012 2.6E-07 49.5 1.1 28 86-113 146-179 (380)
37 PRK14277 chaperone protein Dna 94.8 0.013 2.8E-07 49.6 1.2 39 87-137 171-224 (386)
38 PRK14278 chaperone protein Dna 94.7 0.014 3.1E-07 49.3 1.2 53 86-138 137-195 (378)
39 PRK14287 chaperone protein Dna 94.7 0.018 4E-07 48.5 1.8 39 87-137 154-207 (371)
40 PRK14286 chaperone protein Dna 94.6 0.023 5E-07 48.0 2.4 39 87-137 166-215 (372)
41 PRK14282 chaperone protein Dna 94.6 0.014 3E-07 49.0 1.0 39 87-137 168-221 (369)
42 COG0484 DnaJ DnaJ-class molecu 94.6 0.015 3.2E-07 51.0 1.1 39 87-137 158-209 (371)
43 PRK14291 chaperone protein Dna 94.4 0.025 5.5E-07 47.8 2.1 26 86-111 154-185 (382)
44 PTZ00037 DnaJ_C chaperone prot 94.4 0.018 4E-07 50.0 1.3 42 86-137 164-220 (421)
45 PRK14297 chaperone protein Dna 94.4 0.024 5.3E-07 47.7 1.9 38 88-137 165-217 (380)
46 PRK14288 chaperone protein Dna 94.4 0.022 4.8E-07 48.0 1.7 40 86-137 154-204 (369)
47 PRK14289 chaperone protein Dna 94.3 0.025 5.4E-07 47.7 1.8 27 86-112 152-184 (386)
48 PRK14301 chaperone protein Dna 94.0 0.045 9.7E-07 46.3 2.7 39 87-137 160-209 (373)
49 PRK14292 chaperone protein Dna 93.8 0.043 9.4E-07 45.9 2.3 12 126-137 198-209 (371)
50 PRK14293 chaperone protein Dna 93.5 0.032 7E-07 46.9 1.1 26 86-111 141-172 (374)
51 PRK14281 chaperone protein Dna 93.5 0.033 7.2E-07 47.4 1.2 53 86-138 161-218 (397)
52 PRK14291 chaperone protein Dna 93.5 0.048 1E-06 46.1 2.1 38 87-137 172-220 (382)
53 PRK14298 chaperone protein Dna 93.4 0.026 5.6E-07 47.9 0.4 53 86-138 139-197 (377)
54 PRK14293 chaperone protein Dna 93.3 0.058 1.3E-06 45.4 2.4 39 87-137 159-212 (374)
55 PRK14283 chaperone protein Dna 93.3 0.028 6.1E-07 47.3 0.5 38 88-137 163-215 (378)
56 PRK14300 chaperone protein Dna 93.3 0.045 9.7E-07 46.1 1.7 39 87-137 161-210 (372)
57 PRK14294 chaperone protein Dna 93.2 0.05 1.1E-06 45.7 1.7 39 87-137 160-209 (366)
58 PRK14295 chaperone protein Dna 93.0 0.056 1.2E-06 46.0 1.8 39 87-137 182-231 (389)
59 PRK14289 chaperone protein Dna 92.4 0.048 1.1E-06 45.9 0.6 39 87-137 170-223 (386)
60 TIGR02642 phage_xxxx uncharact 91.8 0.087 1.9E-06 42.3 1.4 27 88-114 99-130 (186)
61 PRK14292 chaperone protein Dna 90.7 0.098 2.1E-06 43.8 0.8 49 86-137 137-195 (371)
62 PRK14284 chaperone protein Dna 89.9 0.16 3.4E-06 43.2 1.4 49 86-138 156-210 (391)
63 PRK14290 chaperone protein Dna 89.9 0.14 3E-06 43.0 1.0 50 87-138 148-204 (365)
64 KOG2813 Predicted molecular ch 89.5 0.16 3.5E-06 45.5 1.2 35 90-139 236-270 (406)
65 TIGR02642 phage_xxxx uncharact 88.7 0.23 5E-06 39.8 1.4 29 99-137 99-127 (186)
66 KOG2813 Predicted molecular ch 88.2 0.25 5.5E-06 44.3 1.5 48 89-136 188-245 (406)
67 PLN03165 chaperone protein dna 82.8 0.82 1.8E-05 34.2 1.7 23 88-110 75-97 (111)
68 TIGR00630 uvra excinuclease AB 77.8 1.1 2.4E-05 43.0 1.3 34 100-136 737-770 (924)
69 PF10080 DUF2318: Predicted me 77.7 1.8 3.8E-05 31.9 2.0 21 101-121 37-57 (102)
70 PF15616 TerY-C: TerY-C metal 69.0 3 6.4E-05 32.2 1.5 21 95-115 101-121 (131)
71 PF14122 YokU: YokU-like prote 68.3 4.7 0.0001 29.9 2.3 38 101-138 1-45 (87)
72 COG0178 UvrA Excinuclease ATPa 64.5 2.7 6E-05 41.3 0.7 33 101-136 732-764 (935)
73 smart00423 PSI domain found in 61.1 1.9 4.1E-05 26.2 -0.7 26 89-114 5-30 (46)
74 PRK00635 excinuclease ABC subu 57.3 4.9 0.00011 41.7 1.0 34 100-136 1608-1641(1809)
75 smart00261 FU Furin-like repea 57.2 6.4 0.00014 23.3 1.2 27 89-116 9-35 (46)
76 KOG0712 Molecular chaperone (D 55.8 7.4 0.00016 34.1 1.7 32 86-117 125-161 (337)
77 TIGR03829 YokU_near_AblA uncha 52.7 10 0.00022 27.8 1.8 35 101-138 1-45 (89)
78 PRK00349 uvrA excinuclease ABC 50.8 7.5 0.00016 37.6 1.1 34 100-136 739-772 (943)
79 PRK06921 hypothetical protein; 46.6 9.3 0.0002 30.9 0.9 20 97-116 30-49 (266)
80 cd03031 GRX_GRX_like Glutaredo 44.2 19 0.00042 27.5 2.2 59 71-135 85-143 (147)
81 TIGR00595 priA primosomal prot 42.8 18 0.00039 32.0 2.1 11 124-134 252-262 (505)
82 PF09904 HTH_43: Winged helix- 38.3 23 0.0005 26.2 1.8 19 69-87 4-22 (90)
83 cd01129 PulE-GspE PulE/GspE Th 34.8 31 0.00067 27.8 2.2 52 81-136 210-261 (264)
84 PF09630 DUF2024: Domain of un 32.1 23 0.0005 25.8 0.9 30 71-108 30-61 (81)
85 cd00729 rubredoxin_SM Rubredox 32.1 21 0.00046 21.3 0.6 23 109-138 9-31 (34)
86 TIGR00757 RNaseEG ribonuclease 32.0 21 0.00046 31.4 0.9 12 70-81 346-357 (414)
87 KOG0712 Molecular chaperone (D 31.0 24 0.00052 31.0 1.0 22 89-110 171-197 (337)
88 PRK14873 primosome assembly pr 29.4 39 0.00084 31.5 2.1 54 79-134 372-431 (665)
89 PRK05580 primosome assembly pr 26.4 48 0.001 30.4 2.2 53 80-134 371-430 (679)
90 KOG0715 Molecular chaperone (D 24.7 41 0.00089 28.1 1.3 22 88-109 164-191 (288)
91 COG1107 Archaea-specific RecJ- 22.9 50 0.0011 32.1 1.7 49 86-136 51-106 (715)
92 PRK06835 DNA replication prote 22.9 28 0.0006 29.4 -0.0 15 97-111 96-110 (329)
93 KOG3505 Mitochondrial/chloropl 22.7 43 0.00093 23.2 0.9 8 106-113 17-24 (55)
94 PF07295 DUF1451: Protein of u 22.6 90 0.002 24.1 2.7 33 96-136 109-141 (146)
95 PF14634 zf-RING_5: zinc-RING 21.9 16 0.00034 22.0 -1.2 23 98-132 21-43 (44)
96 PF13920 zf-C3HC4_3: Zinc fing 21.5 16 0.00035 22.2 -1.3 25 98-134 21-46 (50)
97 PRK00488 pheS phenylalanyl-tRN 21.0 58 0.0013 28.5 1.6 24 89-115 261-285 (339)
98 PF07967 zf-C3HC: C3HC zinc fi 20.9 70 0.0015 23.3 1.7 46 66-112 1-56 (133)
99 PF14380 WAK_assoc: Wall-assoc 20.8 79 0.0017 21.6 1.9 54 44-102 19-77 (94)
100 COG4519 Uncharacterized protei 20.7 92 0.002 23.5 2.4 19 69-87 4-22 (95)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.09 E-value=0.00022 Score=53.18 Aligned_cols=28 Identities=25% Similarity=0.764 Sum_probs=25.2
Q ss_pred CCCceecccCCCCCeeeeeeccceeeeE
Q 032514 85 QPRPVSCSSCNSNGHIDCKWCAGTGFFI 112 (139)
Q Consensus 85 qprPv~CssC~s~G~vECkWCaGTGfFi 112 (139)
+-.++.|..|+|.|...|++|.|+|+..
T Consensus 38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~ 65 (111)
T PLN03165 38 RENTQPCFPCSGTGAQVCRFCVGSGNVT 65 (111)
T ss_pred hccCCCCCCCCCCCCcCCCCCcCcCeEE
Confidence 3458899999999999999999999976
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.76 E-value=0.00031 Score=46.24 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=15.1
Q ss_pred eeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 100 vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
..|+-|.|+|+.+.=.++.--+-.-.++|+.|.|+|..
T Consensus 16 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~ 53 (66)
T PF00684_consen 16 KTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI 53 (66)
T ss_dssp EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE
T ss_pred cCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE
Confidence 45555555555544332111111223445555555554
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.19 E-value=0.0039 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.915 Sum_probs=11.8
Q ss_pred ceecccCCCCCe-----eeeeeccceee
Q 032514 88 PVSCSSCNSNGH-----IDCKWCAGTGF 110 (139)
Q Consensus 88 Pv~CssC~s~G~-----vECkWCaGTGf 110 (139)
.+.|..|.|.|. .-|.-|.|+|+
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 167 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQ 167 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcE
Confidence 445666655553 23555555554
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.0035 Score=52.91 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=8.7
Q ss_pred ccceeecceeee
Q 032514 126 TTCVICAGKVVW 137 (139)
Q Consensus 126 T~CvICsGKG~~ 137 (139)
.+|+.|.|+|.+
T Consensus 197 ~~C~~C~G~g~v 208 (378)
T PRK14278 197 DPCHECAGDGRV 208 (378)
T ss_pred CCCCCCCCceeE
Confidence 458888888764
No 5
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0033 Score=52.47 Aligned_cols=27 Identities=33% Similarity=0.842 Sum_probs=16.5
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.|. ..|.-|.|+|..+
T Consensus 140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 172 (371)
T PRK10767 140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVR 172 (371)
T ss_pred eecccCCCCCCcccCCCCCCccCCCCCCeeEEE
Confidence 34566777777663 3566677766543
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.06 E-value=0.0034 Score=52.75 Aligned_cols=47 Identities=32% Similarity=0.678 Sum_probs=29.0
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
.|.+.|..|+|.|- .-|.-|.|+|..+.+--|+ +. .++|+.|.|+|.
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~-~~---~~~C~~C~G~G~ 196 (365)
T PRK14285 144 TRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFF-RV---TTTCPKCYGNGK 196 (365)
T ss_pred eecccCCCCCCcccCCCCCCccCCCccCceeEEecCcee-EE---eeecCCCCCccc
Confidence 34677888888873 4588888888776654443 22 344555555443
No 7
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.98 E-value=0.0042 Score=52.33 Aligned_cols=26 Identities=35% Similarity=1.034 Sum_probs=15.9
Q ss_pred CCceecccCCCCCe------eeeeeccceeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFF 111 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfF 111 (139)
.|.+.|..|.|.|. ..|.-|.|+|..
T Consensus 142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v 173 (373)
T PRK14301 142 PKNVTCDDCGGSGAAPGTSPETCRHCGGSGQV 173 (373)
T ss_pred eecccCCCCCCcccCCCCCCcccCCccCeeEE
Confidence 34566777777663 346666666654
No 8
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.96 E-value=0.0037 Score=51.65 Aligned_cols=30 Identities=37% Similarity=0.779 Sum_probs=21.8
Q ss_pred CCceecccCCCCC------eeeeeeccceeeeEecC
Q 032514 86 PRPVSCSSCNSNG------HIDCKWCAGTGFFILGD 115 (139)
Q Consensus 86 prPv~CssC~s~G------~vECkWCaGTGfFilGd 115 (139)
.|.+.|..|.|.| ...|.-|.|+|+.+.--
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~ 176 (354)
T TIGR02349 141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQ 176 (354)
T ss_pred ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEE
Confidence 5577888898888 45688888888765433
No 9
>PRK14298 chaperone protein DnaJ; Provisional
Probab=95.94 E-value=0.004 Score=52.67 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.6
Q ss_pred ccceeecceeee
Q 032514 126 TTCVICAGKVVW 137 (139)
Q Consensus 126 T~CvICsGKG~~ 137 (139)
.+|..|.|+|.+
T Consensus 199 ~~C~~C~G~g~v 210 (377)
T PRK14298 199 SPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCCCccEE
Confidence 358888888765
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.91 E-value=0.0049 Score=51.97 Aligned_cols=26 Identities=42% Similarity=0.947 Sum_probs=16.3
Q ss_pred CCceecccCCCCCe------eeeeeccceeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFF 111 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfF 111 (139)
.|.+.|..|.|.|. ..|.-|.|+|..
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v 179 (372)
T PRK14286 148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQI 179 (372)
T ss_pred eccccCCCCcCCCcCCCCCCccCCCCcCeEEE
Confidence 45666777777663 346666666654
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.90 E-value=0.0044 Score=52.12 Aligned_cols=39 Identities=36% Similarity=0.854 Sum_probs=33.1
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 211 (365)
T PRK14285 162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII------------SNPCKSCKGKGSL 211 (365)
T ss_pred CCccCCCccCceeEEecCceeEEeeecCCCCCccccc------------CCCCCCCCCCCEE
Confidence 37889999999964 799999999874 3569999999975
No 12
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.85 E-value=0.0031 Score=53.10 Aligned_cols=29 Identities=28% Similarity=0.853 Sum_probs=21.5
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeEec
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILG 114 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFilG 114 (139)
.|.+.|..|.|.|. ..|.-|.|+|+.+.-
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 175 (376)
T PRK14280 141 PKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVE 175 (376)
T ss_pred eeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEE
Confidence 45778999988874 458888888876543
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=95.81 E-value=0.0061 Score=51.12 Aligned_cols=27 Identities=33% Similarity=0.764 Sum_probs=15.9
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.|- .-|.-|.|+|+.+
T Consensus 150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 182 (369)
T PRK14282 150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIR 182 (369)
T ss_pred eecccCCCCCccCCCCCCCCcCCCCCCCcCEEE
Confidence 34566777766553 3466666666543
No 14
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=95.79 E-value=0.0085 Score=39.44 Aligned_cols=40 Identities=35% Similarity=0.934 Sum_probs=28.2
Q ss_pred CCCceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeeccee
Q 032514 85 QPRPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKV 135 (139)
Q Consensus 85 qprPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG 135 (139)
...+..|+.|++.|.+ .|.-|.|+|++| + ..+|+.|.|+|
T Consensus 12 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i--~---------~~~C~~C~G~g 66 (66)
T PF00684_consen 12 GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII--E---------KDPCKTCKGSG 66 (66)
T ss_dssp TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE---T---------SSB-SSSTTSS
T ss_pred CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE--C---------CCCCCCCCCcC
Confidence 3458899999999976 699999999986 3 34688888876
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.79 E-value=0.0064 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.863 Sum_probs=17.6
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.+.+.|..|.|.|. ..|.-|.|+|+..
T Consensus 171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 203 (392)
T PRK14279 171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVIS 203 (392)
T ss_pred eccccCCCCccccccCCCCCCCCCCCcceEEEE
Confidence 45667777777774 3467777776544
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.77 E-value=0.0056 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.840 Sum_probs=13.9
Q ss_pred CceecccCCCCCe------eeeeeccceeee
Q 032514 87 RPVSCSSCNSNGH------IDCKWCAGTGFF 111 (139)
Q Consensus 87 rPv~CssC~s~G~------vECkWCaGTGfF 111 (139)
|.+.|..|.|.|. ..|.-|.|+|..
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 173 (366)
T PRK14294 143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQV 173 (366)
T ss_pred ecccCCCCCCccccCCCCcccCCCcCCeEEE
Confidence 4556666666653 235555555544
No 17
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.75 E-value=0.0065 Score=51.12 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=17.3
Q ss_pred CCceecccCCCCC------eeeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNG------HIDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G------~vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.| ...|.-|.|+|+..
T Consensus 143 ~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~ 175 (372)
T PRK14300 143 SSEVKCDTCHGSGSEKGETVTTCDACSGVGATR 175 (372)
T ss_pred eeccccCCCCCcccCCCCCCccCCCccCeEEEE
Confidence 3456777777766 34577777776554
No 18
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.72 E-value=0.0087 Score=50.12 Aligned_cols=38 Identities=26% Similarity=0.768 Sum_probs=26.5
Q ss_pred ceecccCCCCCe---------------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 88 PVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 88 Pv~CssC~s~G~---------------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
+..|..|.|.|. ..|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP------------EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc------------cCCCCCCCCceeE
Confidence 556777777773 4677777777762 3468888888875
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.69 E-value=0.0065 Score=50.20 Aligned_cols=38 Identities=34% Similarity=0.854 Sum_probs=32.6
Q ss_pred ceecccCCCCCe---------------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 88 PVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 88 Pv~CssC~s~G~---------------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
+..|..|.|.|. ..|.-|.|+|+++ ..+|..|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII------------KEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec------------CCCCCCCCCCcEe
Confidence 788999999985 4699999999986 2469999999975
No 20
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0082 Score=52.53 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=23.1
Q ss_pred CCceecccCCCC------CeeeeeeccceeeeEecC
Q 032514 86 PRPVSCSSCNSN------GHIDCKWCAGTGFFILGD 115 (139)
Q Consensus 86 prPv~CssC~s~------G~vECkWCaGTGfFilGd 115 (139)
++.+.|+.|.|. ....|.-|.|+|....-.
T Consensus 140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~ 175 (371)
T COG0484 140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQ 175 (371)
T ss_pred ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEE
Confidence 567888888888 567888888888755544
No 21
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.63 E-value=0.0039 Score=52.55 Aligned_cols=27 Identities=33% Similarity=0.938 Sum_probs=21.4
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.|. ..|.-|.|+|...
T Consensus 144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 176 (380)
T PRK14276 144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVIT 176 (380)
T ss_pred eccccCCCCcCcccCCCCCCccCCCCCCeeEEE
Confidence 56788999999884 5699999998754
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.62 E-value=0.0066 Score=51.13 Aligned_cols=39 Identities=36% Similarity=0.801 Sum_probs=32.8
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 212 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee------------cCCCCCCCCceEE
Confidence 47889999999864 699999999875 2569999999975
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.59 E-value=0.0061 Score=51.60 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=8.4
Q ss_pred ccceeecceeee
Q 032514 126 TTCVICAGKVVW 137 (139)
Q Consensus 126 T~CvICsGKG~~ 137 (139)
.+|+.|.|+|.+
T Consensus 212 ~~C~~C~G~g~v 223 (391)
T PRK14284 212 DPCSVCRGQGRI 223 (391)
T ss_pred CcCCCCCCccee
Confidence 457888887764
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.58 E-value=0.0072 Score=51.06 Aligned_cols=27 Identities=33% Similarity=0.764 Sum_probs=17.2
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.|- ..|.-|.|+|..+
T Consensus 153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 185 (386)
T PRK14277 153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVR 185 (386)
T ss_pred EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEE
Confidence 34667777777663 4477777777543
No 25
>PRK14296 chaperone protein DnaJ; Provisional
Probab=95.49 E-value=0.0093 Score=50.39 Aligned_cols=27 Identities=33% Similarity=0.656 Sum_probs=18.8
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.|. ..|.-|.|+|..+
T Consensus 147 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 179 (372)
T PRK14296 147 DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVL 179 (372)
T ss_pred eeeeccCCCCCCccCCCCCCccCCCCCCCceEE
Confidence 45677888888774 4588888887554
No 26
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.42 E-value=0.0053 Score=51.73 Aligned_cols=27 Identities=33% Similarity=0.934 Sum_probs=20.3
Q ss_pred CCceecccCCCCC------eeeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNG------HIDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G------~vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.| ...|.-|.|+|+..
T Consensus 136 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 168 (371)
T PRK14287 136 PREETCGTCHGSGAKPGTKPETCSHCGGSGQLN 168 (371)
T ss_pred eeeccCCCCCCcccCCCCCCcccCCCCCEEEEE
Confidence 3567899998887 35688999998654
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.36 E-value=0.013 Score=49.86 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.4
Q ss_pred cceeecceeee
Q 032514 127 TCVICAGKVVW 137 (139)
Q Consensus 127 ~CvICsGKG~~ 137 (139)
+|..|.|+|.+
T Consensus 221 ~C~~C~G~g~v 231 (397)
T PRK14281 221 RCPACYGEGIK 231 (397)
T ss_pred CCCCCCCCccE
Confidence 47777777654
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.18 E-value=0.013 Score=49.25 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=16.4
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
+|.+.|..|.|.|. .-|.-|.|+|..+
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 176 (378)
T PRK14283 144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVK 176 (378)
T ss_pred eeeccCCCCCccccCCCCCCccCCCcCCccEEE
Confidence 44566777776653 3366666666654
No 29
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.18 E-value=0.011 Score=49.97 Aligned_cols=39 Identities=38% Similarity=0.833 Sum_probs=32.1
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI------------KEPCQTCHGTGHE 215 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc------------cCCCCCCCCceEE
Confidence 37889999999865 589999999875 2469999999975
No 30
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.014 Score=55.06 Aligned_cols=46 Identities=35% Similarity=0.731 Sum_probs=34.8
Q ss_pred eecccCCCCCee-----eeeeccceeeeEecCeeee-----------e-CCCCCccceeecceeee
Q 032514 89 VSCSSCNSNGHI-----DCKWCAGTGFFILGDNMLC-----------Q-VPSRNTTCVICAGKVVW 137 (139)
Q Consensus 89 v~CssC~s~G~v-----ECkWCaGTGfFilGdnmlC-----------e-vpsrnT~CvICsGKG~~ 137 (139)
..|.-|.|+|++ ||.-|+||||- |++-. + -.++--+||.|.|||.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~---~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V 65 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFS---DDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTV 65 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccc---cccChhhhhhhhhccccccccCCCCCCeeccceeE
Confidence 469999999864 79999999996 33332 1 12456799999999986
No 31
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.07 E-value=0.015 Score=49.50 Aligned_cols=26 Identities=31% Similarity=0.772 Sum_probs=14.6
Q ss_pred CCceecccCCCCCe------eeeeeccceeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFF 111 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfF 111 (139)
.|.+.|..|.|.|- ..|.-|.|+|..
T Consensus 164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 195 (389)
T PRK14295 164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQV 195 (389)
T ss_pred eccccCCCCcccccCCCCCCcCCCCCCCEeEE
Confidence 34556666666653 346666666543
No 32
>PRK14296 chaperone protein DnaJ; Provisional
Probab=94.94 E-value=0.011 Score=49.94 Aligned_cols=39 Identities=31% Similarity=0.817 Sum_probs=33.1
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|+.|.|+|.+
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 218 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII------------KNKCKNCKGKGKY 218 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee------------cccccCCCCceEE
Confidence 37889999999975 799999999885 2559999999975
No 33
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.93 E-value=0.021 Score=49.68 Aligned_cols=25 Identities=40% Similarity=1.100 Sum_probs=19.0
Q ss_pred CCceecccCCCCCe-----eeeeeccceee
Q 032514 86 PRPVSCSSCNSNGH-----IDCKWCAGTGF 110 (139)
Q Consensus 86 prPv~CssC~s~G~-----vECkWCaGTGf 110 (139)
.|.+.|..|.|.|. ..|..|.|+|+
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 148 NKDVICANCEGHGGPKDAFVDCKLCNGQGI 177 (421)
T ss_pred eccccccccCCCCCCCCCCccCCCCCCCCe
Confidence 45778888888874 35888888886
No 34
>PRK10767 chaperone protein DnaJ; Provisional
Probab=94.92 E-value=0.017 Score=48.31 Aligned_cols=39 Identities=31% Similarity=0.825 Sum_probs=33.2
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+++ ..+|..|.|+|.+
T Consensus 158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 207 (371)
T PRK10767 158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII------------KDPCKKCHGQGRV 207 (371)
T ss_pred CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC------------CCCCCCCCCCceE
Confidence 36799999999976 499999999975 2569999999975
No 35
>PRK14279 chaperone protein DnaJ; Provisional
Probab=94.82 E-value=0.016 Score=49.36 Aligned_cols=39 Identities=41% Similarity=0.855 Sum_probs=33.3
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|+.|+|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~g~v 238 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII------------EDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe------------CCcCCCCCCCeEE
Confidence 47899999999975 699999999875 3469999999975
No 36
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.82 E-value=0.012 Score=49.55 Aligned_cols=28 Identities=36% Similarity=0.833 Sum_probs=20.8
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeEe
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFIL 113 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFil 113 (139)
.|.+.|..|.|.|. .-|.-|.|+|+.+.
T Consensus 146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 179 (380)
T PRK14297 146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRV 179 (380)
T ss_pred eeeccCCCcccccccCCCcCccCCCccCeEEEEE
Confidence 45677888888874 45888888887653
No 37
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.78 E-value=0.013 Score=49.57 Aligned_cols=39 Identities=33% Similarity=0.905 Sum_probs=33.1
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+++ ..+|..|.|+|.+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 224 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII------------TDPCNKCGGTGRI 224 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec------------cCCCCCCCCCcEE
Confidence 47899999999865 599999999986 2469999999975
No 38
>PRK14278 chaperone protein DnaJ; Provisional
Probab=94.67 E-value=0.014 Score=49.30 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=36.3
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
.|.+.|..|.|.|- ..|.-|.|+|....-..+.-..-....+|+-|.|+|..+
T Consensus 137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 195 (378)
T PRK14278 137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI 195 (378)
T ss_pred EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence 46788999999884 579999999975543221111111245899999999764
No 39
>PRK14287 chaperone protein DnaJ; Provisional
Probab=94.65 E-value=0.018 Score=48.52 Aligned_cols=39 Identities=38% Similarity=0.945 Sum_probs=31.8
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
++..|..|+|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 207 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII------------KQKCATCGGKGKV 207 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc------------cccCCCCCCeeEE
Confidence 47889999999853 699999999864 3559999999875
No 40
>PRK14286 chaperone protein DnaJ; Provisional
Probab=94.64 E-value=0.023 Score=47.95 Aligned_cols=39 Identities=33% Similarity=0.909 Sum_probs=33.1
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~~ 215 (372)
T PRK14286 166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI------------SNPCKTCGGQGLQ 215 (372)
T ss_pred CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe------------cccCCCCCCCcEE
Confidence 37899999999965 699999999875 2359999999975
No 41
>PRK14282 chaperone protein DnaJ; Provisional
Probab=94.60 E-value=0.014 Score=48.99 Aligned_cols=39 Identities=33% Similarity=0.755 Sum_probs=32.8
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 221 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP------------GEYCHECGGSGRI 221 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC------------CCCCCCCCCceeE
Confidence 37899999999965 599999999875 3569999999964
No 42
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.015 Score=51.01 Aligned_cols=39 Identities=38% Similarity=0.846 Sum_probs=34.3
Q ss_pred CceecccCCCCCe-------------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGH-------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~-------------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.|.+|..|+|+|. +.|.-|.|+|-.| ..+|..|.|+|.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i------------~~pC~~C~G~G~v 209 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII------------KDPCGKCKGKGRV 209 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC------------CCCCCCCCCCCeE
Confidence 5999999999995 5799999999887 4679999999985
No 43
>PRK14291 chaperone protein DnaJ; Provisional
Probab=94.41 E-value=0.025 Score=47.77 Aligned_cols=26 Identities=38% Similarity=0.920 Sum_probs=15.6
Q ss_pred CCceecccCCCCC------eeeeeeccceeee
Q 032514 86 PRPVSCSSCNSNG------HIDCKWCAGTGFF 111 (139)
Q Consensus 86 prPv~CssC~s~G------~vECkWCaGTGfF 111 (139)
.|.+.|..|.|.| ...|.-|.|+|..
T Consensus 154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 185 (382)
T PRK14291 154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEI 185 (382)
T ss_pred eeeccCCCCccccCCCCCCCccCCCCCCceEE
Confidence 4456677777666 2446666666643
No 44
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.38 E-value=0.018 Score=49.99 Aligned_cols=42 Identities=36% Similarity=0.695 Sum_probs=34.6
Q ss_pred CCceecccCCCCCe---------------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 86 PRPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 86 prPv~CssC~s~G~---------------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
..+..|..|+|.|. +.|.-|.|+|+.|- ...+|..|.|+|.+
T Consensus 164 ~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~----------~~~~C~~C~G~g~v 220 (421)
T PTZ00037 164 DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP----------ESKKCKNCSGKGVK 220 (421)
T ss_pred CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc----------ccccCCcCCCccee
Confidence 45789999999994 37999999998662 34679999999976
No 45
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.36 E-value=0.024 Score=47.71 Aligned_cols=38 Identities=37% Similarity=0.887 Sum_probs=31.6
Q ss_pred ceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 88 PVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 88 Pv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
+..|..|+|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI------------EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc------------CCCCCCCCCCeEE
Confidence 7789999999865 699999999874 2469999999964
No 46
>PRK14288 chaperone protein DnaJ; Provisional
Probab=94.35 E-value=0.022 Score=48.02 Aligned_cols=40 Identities=35% Similarity=0.824 Sum_probs=33.5
Q ss_pred CCceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 86 PRPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 86 prPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
+.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 154 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 204 (369)
T PRK14288 154 KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII------------KTPCQACKGKTYI 204 (369)
T ss_pred CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc------------cccCccCCCcceE
Confidence 357889999999975 599999999875 2459999999975
No 47
>PRK14289 chaperone protein DnaJ; Provisional
Probab=94.27 E-value=0.025 Score=47.66 Aligned_cols=27 Identities=33% Similarity=0.776 Sum_probs=20.4
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
.|.+.|..|.|.|. ..|+-|.|+|+..
T Consensus 152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 184 (386)
T PRK14289 152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVT 184 (386)
T ss_pred EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEE
Confidence 56788999988884 4588888887654
No 48
>PRK14301 chaperone protein DnaJ; Provisional
Probab=93.98 E-value=0.045 Score=46.27 Aligned_cols=39 Identities=31% Similarity=0.834 Sum_probs=33.1
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+.+ ..+|+.|.|+|.+
T Consensus 160 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 209 (373)
T PRK14301 160 SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI------------THPCPKCKGSGIV 209 (373)
T ss_pred CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec------------CCCCCCCCCCcee
Confidence 47899999999964 699999999875 2469999999976
No 49
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.78 E-value=0.043 Score=45.89 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.3
Q ss_pred ccceeecceeee
Q 032514 126 TTCVICAGKVVW 137 (139)
Q Consensus 126 T~CvICsGKG~~ 137 (139)
.+|+.|.|+|.+
T Consensus 198 ~~C~~C~G~g~v 209 (371)
T PRK14292 198 DPCTVCRGRGRT 209 (371)
T ss_pred CCCCCCCCceEE
Confidence 457777777765
No 50
>PRK14293 chaperone protein DnaJ; Provisional
Probab=93.54 E-value=0.032 Score=46.92 Aligned_cols=26 Identities=31% Similarity=0.877 Sum_probs=18.5
Q ss_pred CCceecccCCCCCe------eeeeeccceeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFF 111 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfF 111 (139)
.|.+.|..|.+.|- .-|..|.|+|..
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 172 (374)
T PRK14293 141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQV 172 (374)
T ss_pred eccccCCCCCCcCCCCCCCCeeCCCCCCcceE
Confidence 45677888888764 348888888764
No 51
>PRK14281 chaperone protein DnaJ; Provisional
Probab=93.51 E-value=0.033 Score=47.39 Aligned_cols=53 Identities=25% Similarity=0.504 Sum_probs=35.1
Q ss_pred CCceecccCCCCCe-----eeeeeccceeeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 86 PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 86 prPv~CssC~s~G~-----vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
.|.+.|..|.|.|. ..|.-|.|+|+...--.+.-..-....+|+.|.|+|...
T Consensus 161 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (397)
T PRK14281 161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV 218 (397)
T ss_pred EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee
Confidence 45778999999885 359999999975322111111111245899999999753
No 52
>PRK14291 chaperone protein DnaJ; Provisional
Probab=93.48 E-value=0.048 Score=46.10 Aligned_cols=38 Identities=29% Similarity=0.823 Sum_probs=31.6
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+ + ..+|..|.|+|.+
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~------------~~~C~~C~G~g~v 220 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-L------------REPCSKCNGRGLV 220 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-E------------ccCCCCCCCCceE
Confidence 37889999999965 7999999995 3 2469999999975
No 53
>PRK14298 chaperone protein DnaJ; Provisional
Probab=93.40 E-value=0.026 Score=47.86 Aligned_cols=53 Identities=30% Similarity=0.565 Sum_probs=35.2
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
.|.+.|..|.|.|. .-|.-|.|+|..+.--++.--.-...++|+.|.|+|...
T Consensus 139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 197 (377)
T PRK14298 139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI 197 (377)
T ss_pred EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc
Confidence 45788999999885 569999999975532110000001356899999999753
No 54
>PRK14293 chaperone protein DnaJ; Provisional
Probab=93.33 E-value=0.058 Score=45.39 Aligned_cols=39 Identities=38% Similarity=0.941 Sum_probs=31.8
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 212 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI------------EDPCDACGGQGVK 212 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe------------ccCCCCCCCCccc
Confidence 36789999999964 699999999864 2359999999875
No 55
>PRK14283 chaperone protein DnaJ; Provisional
Probab=93.31 E-value=0.028 Score=47.33 Aligned_cols=38 Identities=32% Similarity=0.814 Sum_probs=32.7
Q ss_pred ceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 88 PVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 88 Pv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
+..|..|.|.|.+ .|.-|.|+|+++ ..+|..|.|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV------------EKPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec------------CCCCCCCCCceee
Confidence 6789999999875 599999999985 2459999999976
No 56
>PRK14300 chaperone protein DnaJ; Provisional
Probab=93.31 E-value=0.045 Score=46.13 Aligned_cols=39 Identities=28% Similarity=0.751 Sum_probs=32.8
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+.+ ..+|..|.|+|++
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 210 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII------------KNPCKKCHGMGRY 210 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe------------CCCCCCCCCceEE
Confidence 47889999999976 589999999875 2559999999986
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=93.15 E-value=0.05 Score=45.65 Aligned_cols=39 Identities=31% Similarity=0.839 Sum_probs=33.3
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 209 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI------------VSPCKTCHGQGRV 209 (366)
T ss_pred CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec------------CcCCCCCCCceEe
Confidence 37899999999965 699999999975 2569999999976
No 58
>PRK14295 chaperone protein DnaJ; Provisional
Probab=92.96 E-value=0.056 Score=46.00 Aligned_cols=39 Identities=28% Similarity=0.813 Sum_probs=32.9
Q ss_pred CceecccCCCCCe-----------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGH-----------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~-----------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|.+.|. +.|.-|.|+|+.+ ..+|..|.|+|.+
T Consensus 182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~~ 231 (389)
T PRK14295 182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA------------DDPCLVCKGSGRA 231 (389)
T ss_pred CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe------------ccCCCCCCCCceE
Confidence 3789999999986 4799999999875 2469999999976
No 59
>PRK14289 chaperone protein DnaJ; Provisional
Probab=92.39 E-value=0.048 Score=45.93 Aligned_cols=39 Identities=28% Similarity=0.808 Sum_probs=32.7
Q ss_pred CceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|..|+|.|.+ .|.-|.|+|+.+ ...|..|.|+|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------------CcCCCCCCCCcEE
Confidence 47889999999875 699999999875 1459999999975
No 60
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=91.82 E-value=0.087 Score=42.25 Aligned_cols=27 Identities=41% Similarity=0.871 Sum_probs=15.9
Q ss_pred ceecccCCCCCeee-----eeeccceeeeEec
Q 032514 88 PVSCSSCNSNGHID-----CKWCAGTGFFILG 114 (139)
Q Consensus 88 Pv~CssC~s~G~vE-----CkWCaGTGfFilG 114 (139)
-..|+.|.|.|.+- |+-|.|+|+..--
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 44566666666542 6666666665433
No 61
>PRK14292 chaperone protein DnaJ; Provisional
Probab=90.74 E-value=0.098 Score=43.79 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=33.7
Q ss_pred CCceecccCCCCC-------eeeeeeccceeeeEecCee---eeeCCCCCccceeecceeee
Q 032514 86 PRPVSCSSCNSNG-------HIDCKWCAGTGFFILGDNM---LCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 86 prPv~CssC~s~G-------~vECkWCaGTGfFilGdnm---lCevpsrnT~CvICsGKG~~ 137 (139)
.|.+.|..|+|.| ...|.-|.|+|....=-.+ +-+. ..+|..|.|.|..
T Consensus 137 ~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~---~~~C~~C~G~G~~ 195 (371)
T PRK14292 137 DRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVET---QQPCPTCRGEGQI 195 (371)
T ss_pred EeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEE---eeecCCCccccee
Confidence 4567899999977 4679999999976521111 1121 4589999999975
No 62
>PRK14284 chaperone protein DnaJ; Provisional
Probab=89.94 E-value=0.16 Score=43.18 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=34.7
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
.|.+.|..|.|.|- .-|.-|.|+|...----++ + -..+|+.|.|+|..+
T Consensus 156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~-~---~~~~C~~C~G~G~~~ 210 (391)
T PRK14284 156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFF-S---MASTCPECGGEGRVI 210 (391)
T ss_pred eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceE-E---EEEECCCCCCCCccc
Confidence 46788999988874 4699999999754211111 1 345899999999754
No 63
>PRK14290 chaperone protein DnaJ; Provisional
Probab=89.86 E-value=0.14 Score=42.99 Aligned_cols=50 Identities=30% Similarity=0.568 Sum_probs=34.4
Q ss_pred CceecccCCCCCe-----eeeeeccceeeeEecC--eeeeeCCCCCccceeecceeeee
Q 032514 87 RPVSCSSCNSNGH-----IDCKWCAGTGFFILGD--NMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 87 rPv~CssC~s~G~-----vECkWCaGTGfFilGd--nmlCevpsrnT~CvICsGKG~~~ 138 (139)
|-+.|..|.|.|. ..|.-|.|+|....-- .++-. -...+|+.|.|+|...
T Consensus 148 r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~--~~~~~C~~C~G~G~~~ 204 (365)
T PRK14290 148 RNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRM--VTVTTCRTCGGRGRIP 204 (365)
T ss_pred ecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEE--EEEEeCCCCCCceeEc
Confidence 3578999999885 5699999999754321 11100 0246899999999753
No 64
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.16 Score=45.51 Aligned_cols=35 Identities=26% Similarity=0.746 Sum_probs=25.8
Q ss_pred ecccCCCCCeeeeeeccceeeeEecCeeeeeCCCCCccceeecceeeeeC
Q 032514 90 SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWFT 139 (139)
Q Consensus 90 ~CssC~s~G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~~ 139 (139)
-|.-|.|+|..||+-|.|- ++-+|--|+|.|+.++
T Consensus 236 ~C~~C~G~G~~~C~tC~gr---------------G~k~C~TC~gtgsll~ 270 (406)
T KOG2813|consen 236 LCYMCHGRGIKECHTCKGR---------------GKKPCTTCSGTGSLLN 270 (406)
T ss_pred hhhhccCCCcccCCcccCC---------------CCcccccccCccceee
Confidence 3555667777777777776 5788999999998753
No 65
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=88.66 E-value=0.23 Score=39.85 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=25.0
Q ss_pred eeeeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 99 HIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 99 ~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
...|.-|.|||+.|-+ ..+|+.|.|+|.+
T Consensus 99 ~~~C~~C~G~G~~i~~----------~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRR----------QRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecC----------CCCCCCCCCccEE
Confidence 6789999999998854 3689999999975
No 66
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=0.25 Score=44.32 Aligned_cols=48 Identities=27% Similarity=0.746 Sum_probs=39.0
Q ss_pred eecccCCCCCeeeeeecccee--eeEecCeeeeeCC--------CCCccceeecceee
Q 032514 89 VSCSSCNSNGHIDCKWCAGTG--FFILGDNMLCQVP--------SRNTTCVICAGKVV 136 (139)
Q Consensus 89 v~CssC~s~G~vECkWCaGTG--fFilGdnmlCevp--------srnT~CvICsGKG~ 136 (139)
..|.-|-|+|.+-|+-|.|.| |+.+|-.|-|..- ...+-|.-|.|+|-
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~ 245 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI 245 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc
Confidence 469999999999999998876 9999999998743 23466888888774
No 67
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=82.79 E-value=0.82 Score=34.20 Aligned_cols=23 Identities=30% Similarity=0.956 Sum_probs=10.2
Q ss_pred ceecccCCCCCeeeeeeccceee
Q 032514 88 PVSCSSCNSNGHIDCKWCAGTGF 110 (139)
Q Consensus 88 Pv~CssC~s~G~vECkWCaGTGf 110 (139)
...|+.|++.|.+-|+-|.|.|+
T Consensus 75 ~~~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 75 VSKCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred EEECCCCCCcceeeCCCCCCCEE
Confidence 33444444444444444444443
No 68
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.83 E-value=1.1 Score=42.99 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=27.0
Q ss_pred eeeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 100 vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
--|.-|.|+|+..+--+.+-++ ..+|+.|.||.+
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~---~~~C~~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDV---YVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCccceEEEEEccCCCCc---ccCCCCcCCcee
Confidence 3488999999988866665554 689999999976
No 69
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=77.65 E-value=1.8 Score=31.88 Aligned_cols=21 Identities=29% Similarity=0.961 Sum_probs=18.3
Q ss_pred eeeeccceeeeEecCeeeeeC
Q 032514 101 DCKWCAGTGFFILGDNMLCQV 121 (139)
Q Consensus 101 ECkWCaGTGfFilGdnmlCev 121 (139)
-|--|.++||++=||+|.|..
T Consensus 37 aCeiC~~~GY~q~g~~lvC~~ 57 (102)
T PF10080_consen 37 ACEICGPKGYYQEGDQLVCKN 57 (102)
T ss_pred eccccCCCceEEECCEEEEec
Confidence 466789999999999999975
No 70
>PF15616 TerY-C: TerY-C metal binding domain
Probab=68.96 E-value=3 Score=32.22 Aligned_cols=21 Identities=38% Similarity=1.069 Sum_probs=18.7
Q ss_pred CCCCeeeeeeccceeeeEecC
Q 032514 95 NSNGHIDCKWCAGTGFFILGD 115 (139)
Q Consensus 95 ~s~G~vECkWCaGTGfFilGd 115 (139)
.+.+++-|+||..+|.|-.+|
T Consensus 101 ~g~~~~~CPwCg~~g~~~~~~ 121 (131)
T PF15616_consen 101 DGEGEVTCPWCGNEGSFGAGD 121 (131)
T ss_pred CCCCCEECCCCCCeeeecccC
Confidence 577889999999999998886
No 71
>PF14122 YokU: YokU-like protein
Probab=68.33 E-value=4.7 Score=29.87 Aligned_cols=38 Identities=18% Similarity=0.545 Sum_probs=29.6
Q ss_pred eeeeccceeeeEecCeeeeeCCCCC-------ccceeecceeeee
Q 032514 101 DCKWCAGTGFFILGDNMLCQVPSRN-------TTCVICAGKVVWF 138 (139)
Q Consensus 101 ECkWCaGTGfFilGdnmlCevpsrn-------T~CvICsGKG~~~ 138 (139)
.|.||.+.-.---=..++=|.|.++ ||+.+|++=|.++
T Consensus 1 ~C~wC~~~~a~~~~~tvyWeLpdGtraIeI~~tP~i~C~~CgmvY 45 (87)
T PF14122_consen 1 KCEWCGSEEASESESTVYWELPDGTRAIEITDTPAIICSNCGMVY 45 (87)
T ss_pred CcccccCcccccccceEEEEcCCCceEEEecCCceeeecCCCcEE
Confidence 4889988655555567888888666 8999999988775
No 72
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=64.45 E-value=2.7 Score=41.34 Aligned_cols=33 Identities=30% Similarity=0.671 Sum_probs=29.4
Q ss_pred eeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 101 ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
-|.-|.|-|+..|=.+.|.+|- .+|++|.||=|
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVy---v~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVY---VPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCCCce---eeCCCcCCccc
Confidence 5888999999999999999887 78999999854
No 73
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=61.09 E-value=1.9 Score=26.19 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=22.4
Q ss_pred eecccCCCCCeeeeeeccceeeeEec
Q 032514 89 VSCSSCNSNGHIDCKWCAGTGFFILG 114 (139)
Q Consensus 89 v~CssC~s~G~vECkWCaGTGfFilG 114 (139)
.+|+.|....+..|.||..++-++.+
T Consensus 5 ~sC~~C~~~~~~~C~Wc~~~~~C~~~ 30 (46)
T smart00423 5 TSCSECLLARDPYCAWCSSQGRCTSG 30 (46)
T ss_pred CcHHHHHcCCCCCCCccCCCCcccCc
Confidence 47999999999999999987777765
No 74
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=57.34 E-value=4.9 Score=41.74 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=27.3
Q ss_pred eeeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 100 vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
--|.-|.|+|+..+--+.|.++- .+|+.|.||.|
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~---~~C~~C~G~R~ 1641 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEK---RPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcc---cCCCCCCCcCC
Confidence 34888889999888877776654 78999999975
No 75
>smart00261 FU Furin-like repeats.
Probab=57.21 E-value=6.4 Score=23.35 Aligned_cols=27 Identities=37% Similarity=0.925 Sum_probs=22.0
Q ss_pred eecccCCCCCeeeeeeccceeeeEecCe
Q 032514 89 VSCSSCNSNGHIDCKWCAGTGFFILGDN 116 (139)
Q Consensus 89 v~CssC~s~G~vECkWCaGTGfFilGdn 116 (139)
..|..|.+.+...|.-|.. |||+..++
T Consensus 9 ~~C~~C~~~~~~~C~~C~~-~~~l~~~~ 35 (46)
T smart00261 9 PECATCTGPGPDDCTSCKH-GFFLDGGT 35 (46)
T ss_pred ccccccCCcCcCcCccCCc-ccCCCCCC
Confidence 5688999999999999975 78877644
No 76
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.75 E-value=7.4 Score=34.11 Aligned_cols=32 Identities=31% Similarity=0.678 Sum_probs=21.4
Q ss_pred CCceecccCCCCCe-----eeeeeccceeeeEecCee
Q 032514 86 PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNM 117 (139)
Q Consensus 86 prPv~CssC~s~G~-----vECkWCaGTGfFilGdnm 117 (139)
+++..|+.|.+.|- ..|.-|.|+|.-+.=-+|
T Consensus 125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~ 161 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQM 161 (337)
T ss_pred ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEec
Confidence 34778888888763 348888888876543333
No 77
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=52.67 E-value=10 Score=27.80 Aligned_cols=35 Identities=23% Similarity=0.654 Sum_probs=22.0
Q ss_pred eeeeccc--------eeeeEe--cCeeeeeCCCCCccceeecceeeee
Q 032514 101 DCKWCAG--------TGFFIL--GDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 101 ECkWCaG--------TGfFil--GdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
.|.||.+ |=++=+ |+..+- =+|+||.+|..=|..+
T Consensus 1 ~C~~C~~~~~~~~~tTv~~el~~G~~~Iv---IknVPa~~C~~CGe~y 45 (89)
T TIGR03829 1 KCRWCEEEKAIARTTTVYWELPDGTKAIE---IKETPSISCSHCGMEY 45 (89)
T ss_pred CCcccCCCceecceEEEEEEecCCceEEE---EecCCcccccCCCcEe
Confidence 3888865 323345 334332 2789999999877654
No 78
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=50.76 E-value=7.5 Score=37.60 Aligned_cols=34 Identities=26% Similarity=0.565 Sum_probs=23.2
Q ss_pred eeeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 100 vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
--|.-|.|+|+..+--+.+-+ -..+|+.|.|+.+
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~---~~~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPD---VYVPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEEEEeccCCC---ccccCccccCccc
Confidence 347777777777654444433 3479999999875
No 79
>PRK06921 hypothetical protein; Provisional
Probab=46.60 E-value=9.3 Score=30.86 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=16.1
Q ss_pred CCeeeeeeccceeeeEecCe
Q 032514 97 NGHIDCKWCAGTGFFILGDN 116 (139)
Q Consensus 97 ~G~vECkWCaGTGfFilGdn 116 (139)
..+.+|+-|.+|||.+.+++
T Consensus 30 ~~~~~Cp~C~dtG~i~~~~~ 49 (266)
T PRK06921 30 AERYDCPKCKDRGIIIYRRN 49 (266)
T ss_pred CCCCCCCCCCCCEEEEeecC
Confidence 45678999999999887654
No 80
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=44.18 E-value=19 Score=27.45 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhccCCCceecccCCCCCeeeeeeccceeeeEecCeeeeeCCCCCccceeeccee
Q 032514 71 NFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKV 135 (139)
Q Consensus 71 ~fakrmE~aW~ISqqprPv~CssC~s~G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG 135 (139)
.|.+-|+.+ ..+.-...|..|.+.+-+-|.+|.|-=..+..+.- ....--.|+.|---|
T Consensus 85 ~L~~lL~~~---~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~---~~~~~~rC~~Cneng 143 (147)
T cd03031 85 ELRKLLKGI---RARAGGGVCEGCGGARFVPCSECNGSCKVFAENAT---AAGGFLRCPECNENG 143 (147)
T ss_pred CHHHHHhhc---ccccCCCCCCCCCCcCeEECCCCCCcceEEeccCc---ccccEEECCCCCccc
Confidence 455566655 12222456999999999999999998655544411 112345677775444
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.84 E-value=18 Score=32.00 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=8.0
Q ss_pred CCccceeecce
Q 032514 124 RNTTCVICAGK 134 (139)
Q Consensus 124 rnT~CvICsGK 134 (139)
-+..||.|.++
T Consensus 252 ~~~~Cp~C~s~ 262 (505)
T TIGR00595 252 IPKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCCC
Confidence 35689999764
No 82
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=38.25 E-value=23 Score=26.22 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 032514 69 SSNFVKRMEQAWLISQQPR 87 (139)
Q Consensus 69 ss~fakrmE~aW~ISqqpr 87 (139)
.+.|+.||..||+|+...+
T Consensus 4 ~~sF~Rrlyla~li~~~~~ 22 (90)
T PF09904_consen 4 KPSFYRRLYLAYLIDSGER 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHS-B
T ss_pred hHHHHHHHHHHHHHhcCCc
Confidence 4689999999999997655
No 83
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=34.81 E-value=31 Score=27.79 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=30.2
Q ss_pred HhccCCCceecccCCCCCeeeeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 81 LISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 81 ~ISqqprPv~CssC~s~G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
.|+|+--|.-|..|+-.-+..++-=+ -+.+..+ ....--+..-|.-|.|.|+
T Consensus 210 vv~QrLv~~lCp~C~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~gC~~C~~~G~ 261 (264)
T cd01129 210 VIAQRLVRKLCPHCKEKCKPSPEELA--RLGLSES--KVYELLTGKGCEHCFGTGY 261 (264)
T ss_pred eEEeEeecccChhhCCcCCCCHHHHH--HccCCcc--ccceeecCCCchhhCCCCC
Confidence 37788889999999977665443111 1222221 0111134567888888876
No 84
>PF09630 DUF2024: Domain of unknown function (DUF2024); InterPro: IPR018592 This protein of 86 residues is expressed in bacteria. It consists of two alpha helices and four beta strands. Its function is unknown.; PDB: 2HFQ_A.
Probab=32.06 E-value=23 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcc--CCCceecccCCCCCeeeeeeccce
Q 032514 71 NFVKRMEQAWLISQ--QPRPVSCSSCNSNGHIDCKWCAGT 108 (139)
Q Consensus 71 ~fakrmE~aW~ISq--qprPv~CssC~s~G~vECkWCaGT 108 (139)
..|...-..||-|. ...+++ ..||++|+..
T Consensus 30 ~~a~~yaK~yL~sig~~~~~vt--------~~eC~FCHse 61 (81)
T PF09630_consen 30 EKAIEYAKEYLKSIGEEDADVT--------QKECRFCHSE 61 (81)
T ss_dssp HHHHHHHHHHHHHHT---S-----------TTTEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCccc--------cccCcccccc
Confidence 33444455788664 444554 3589999874
No 85
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.06 E-value=21 Score=21.32 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=16.8
Q ss_pred eeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 109 GFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 109 GfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
||...|++ .+..||+|..+...|
T Consensus 9 G~i~~g~~-------~p~~CP~Cg~~~~~F 31 (34)
T cd00729 9 GYIHEGEE-------APEKCPICGAPKEKF 31 (34)
T ss_pred CCEeECCc-------CCCcCcCCCCchHHc
Confidence 67778875 245899998776655
No 86
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=32.04 E-value=21 Score=31.36 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 032514 70 SNFVKRMEQAWL 81 (139)
Q Consensus 70 s~fakrmE~aW~ 81 (139)
..+.+.|+++..
T Consensus 346 ~~v~~~l~~~~~ 357 (414)
T TIGR00757 346 RRVLERLKEALR 357 (414)
T ss_pred HHHHHHHHHHHh
Confidence 345555555544
No 87
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.02 E-value=24 Score=31.04 Aligned_cols=22 Identities=41% Similarity=1.025 Sum_probs=12.4
Q ss_pred eecccCCCCCee-----eeeeccceee
Q 032514 89 VSCSSCNSNGHI-----DCKWCAGTGF 110 (139)
Q Consensus 89 v~CssC~s~G~v-----ECkWCaGTGf 110 (139)
..|..|++.|+. .|+-|.|++|
T Consensus 171 ~~C~~C~G~G~~~~~kd~C~~C~G~~~ 197 (337)
T KOG0712|consen 171 LVCDSCNGSGETISLKDRCKTCSGAKV 197 (337)
T ss_pred eEeccCCCccccccccccCcccccchh
Confidence 345556665555 5555555554
No 88
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.42 E-value=39 Score=31.53 Aligned_cols=54 Identities=17% Similarity=0.484 Sum_probs=31.7
Q ss_pred HHHhccCCC-c-eecccCCCCCeeeeeeccceeeeEecC-eeeee---CCCCCccceeecce
Q 032514 79 AWLISQQPR-P-VSCSSCNSNGHIDCKWCAGTGFFILGD-NMLCQ---VPSRNTTCVICAGK 134 (139)
Q Consensus 79 aW~ISqqpr-P-v~CssC~s~G~vECkWCaGTGfFilGd-nmlCe---vpsrnT~CvICsGK 134 (139)
.+.+++++- | +.|..|.- ..+|+-|.+.==|--.+ .+.|- -...+..||.|.++
T Consensus 372 ll~lnRrGyap~l~C~~Cg~--~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 372 LVQVPRRGYVPSLACARCRT--PARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred EEEecCCCCCCeeEhhhCcC--eeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence 466677776 4 47888854 46777777541121223 34343 22346789999775
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=26.41 E-value=48 Score=30.45 Aligned_cols=53 Identities=13% Similarity=0.435 Sum_probs=24.1
Q ss_pred HHhccCCC--ceecccCCCCCeeeeeeccce-eeeEecCeeeeeCC----CCCccceeecce
Q 032514 80 WLISQQPR--PVSCSSCNSNGHIDCKWCAGT-GFFILGDNMLCQVP----SRNTTCVICAGK 134 (139)
Q Consensus 80 W~ISqqpr--Pv~CssC~s~G~vECkWCaGT-GfFilGdnmlCevp----srnT~CvICsGK 134 (139)
|..++.+- -+.|..|.. ...|+-|.+. -|..-...+.|-.= .-+..||.|.+.
T Consensus 371 l~~nrrGy~~~~~C~~Cg~--~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 371 LFLNRRGYAPFLLCRDCGW--VAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred EEEcCCCCCCceEhhhCcC--ccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 44444443 456666642 2344444442 11112233333322 124679999664
No 90
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.70 E-value=41 Score=28.12 Aligned_cols=22 Identities=36% Similarity=0.916 Sum_probs=18.1
Q ss_pred ceecccCCCCCee------eeeecccee
Q 032514 88 PVSCSSCNSNGHI------DCKWCAGTG 109 (139)
Q Consensus 88 Pv~CssC~s~G~v------ECkWCaGTG 109 (139)
+..|..|.+.|.. .|+-|.|+|
T Consensus 164 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 191 (288)
T KOG0715|consen 164 LSDCETCFGSGAEEGAKRESCKTCSGRG 191 (288)
T ss_pred ecccccccCcCcccccccccchhhhCcc
Confidence 6689999888854 499999998
No 91
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=22.93 E-value=50 Score=32.08 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=32.4
Q ss_pred CCceecccCCCCCeee----eeeccceeeeEe---cCeeeeeCCCCCccceeecceee
Q 032514 86 PRPVSCSSCNSNGHID----CKWCAGTGFFIL---GDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 86 prPv~CssC~s~G~vE----CkWCaGTGfFil---GdnmlCevpsrnT~CvICsGKG~ 136 (139)
.+-+.|.-|+++|.++ |..|.|||.... ++.++-..+ .--|+-|.-|+-
T Consensus 51 ~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~--~~lc~~c~~~~~ 106 (715)
T COG1107 51 SFEIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWE--EGLCPECRRKPK 106 (715)
T ss_pred cCCCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcc--cccChhHhhCCc
Confidence 3567899999999985 999999987643 222222211 115777776654
No 92
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.93 E-value=28 Score=29.44 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=11.6
Q ss_pred CCeeeeeeccceeee
Q 032514 97 NGHIDCKWCAGTGFF 111 (139)
Q Consensus 97 ~G~vECkWCaGTGfF 111 (139)
+-+-.|+-|.+|||+
T Consensus 96 ~~~y~Cp~C~dtG~i 110 (329)
T PRK06835 96 EMKYTCPKCKDTGFI 110 (329)
T ss_pred CCCCCCCCCCCCCCc
Confidence 345578889999997
No 93
>KOG3505 consensus Mitochondrial/chloroplast ribosomal protein L33-like [Translation, ribosomal structure and biogenesis]
Probab=22.69 E-value=43 Score=23.22 Aligned_cols=8 Identities=75% Similarity=1.381 Sum_probs=6.7
Q ss_pred cceeeeEe
Q 032514 106 AGTGFFIL 113 (139)
Q Consensus 106 aGTGfFil 113 (139)
||||||..
T Consensus 17 AgtGf~~~ 24 (55)
T KOG3505|consen 17 AGTGFFYV 24 (55)
T ss_pred cccceEEE
Confidence 79999975
No 94
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.61 E-value=90 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCeeeeeeccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 96 SNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 96 s~G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
|.|.-.|.-|.- .+--..|++-++||.|.+..+
T Consensus 109 g~G~l~C~~Cg~--------~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 109 GPGTLVCENCGH--------EVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred cCceEecccCCC--------EEEecCCCcCCCCCCCCCCee
Confidence 455666666643 355567889999999998765
No 95
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=21.93 E-value=16 Score=21.98 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=18.2
Q ss_pred CeeeeeeccceeeeEecCeeeeeCCCCCccceeec
Q 032514 98 GHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICA 132 (139)
Q Consensus 98 G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICs 132 (139)
||+-|.-|...-. .....||+|.
T Consensus 21 gH~~C~~C~~~~~------------~~~~~CP~C~ 43 (44)
T PF14634_consen 21 GHIFCEKCLKKLK------------GKSVKCPICR 43 (44)
T ss_pred CCHHHHHHHHhhc------------CCCCCCcCCC
Confidence 8999999988733 5677888885
No 96
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=21.54 E-value=16 Score=22.17 Aligned_cols=25 Identities=36% Similarity=0.736 Sum_probs=18.8
Q ss_pred Cee-eeeeccceeeeEecCeeeeeCCCCCccceeecce
Q 032514 98 GHI-DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK 134 (139)
Q Consensus 98 G~v-ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGK 134 (139)
||. -|..|+..=+- +...||+|+.+
T Consensus 21 gH~~~C~~C~~~~~~------------~~~~CP~Cr~~ 46 (50)
T PF13920_consen 21 GHLCFCEECAERLLK------------RKKKCPICRQP 46 (50)
T ss_dssp CEEEEEHHHHHHHHH------------TTSBBTTTTBB
T ss_pred CChHHHHHHhHHhcc------------cCCCCCcCChh
Confidence 788 89999887211 67889999865
No 97
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=21.03 E-value=58 Score=28.47 Aligned_cols=24 Identities=50% Similarity=1.149 Sum_probs=18.6
Q ss_pred eecccCCCCCeeeeeeccceeeeE-ecC
Q 032514 89 VSCSSCNSNGHIDCKWCAGTGFFI-LGD 115 (139)
Q Consensus 89 v~CssC~s~G~vECkWCaGTGfFi-lGd 115 (139)
+.|..|.|+| |.-|.++|++= +|-
T Consensus 261 v~~~~~~g~g---c~~ck~~~WiEilG~ 285 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWLEILGC 285 (339)
T ss_pred EEEeccCCCc---ccccCCCCceEEecc
Confidence 5688888876 88999999875 443
No 98
>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=20.88 E-value=70 Score=23.25 Aligned_cols=46 Identities=24% Similarity=0.668 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHH----HHHhccCC--Cceecc----cCCCCCeeeeeeccceeeeE
Q 032514 66 YESSSNFVKRMEQ----AWLISQQP--RPVSCS----SCNSNGHIDCKWCAGTGFFI 112 (139)
Q Consensus 66 ~~sss~fakrmE~----aW~ISqqp--rPv~Cs----sC~s~G~vECkWCaGTGfFi 112 (139)
|-+-.+|.+|++- .| ..+++ +|+.|. .|.++..++|..|..+=.+.
T Consensus 1 P~~r~~~l~RL~Tf~~~~W-~~kp~~lspl~cA~~GW~~~~~d~l~C~~C~~~l~~~ 56 (133)
T PF07967_consen 1 PWDREDFLRRLETFKSLTW-FPKPPWLSPLECARRGWICVSKDMLKCESCGARLCVK 56 (133)
T ss_pred CCCHHHHHHHHHHcccccc-cCCCcccCHHHHHHcCCCcCCCCEEEeCCCCCEEEEe
Confidence 3456789999873 37 22332 388887 47889999999999774444
No 99
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=20.79 E-value=79 Score=21.65 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=31.7
Q ss_pred CCcccccccccccceeeeeecCcc-chHHHHHHHH----HHHHhccCCCceecccCCCCCeeee
Q 032514 44 TSITSTRRSVCGVGVRASVVDSYE-SSSNFVKRME----QAWLISQQPRPVSCSSCNSNGHIDC 102 (139)
Q Consensus 44 ~~~~~~~~r~~~~~v~as~vds~~-sss~fakrmE----~aW~ISqqprPv~CssC~s~G~vEC 102 (139)
........++.-|-|..+.++... +..+|.+-|+ +.|.+ .+-.|..|..+|- .|
T Consensus 19 ~~~~~~C~~~v~vPV~~~~~~~~~~~~~~~~~~L~~GF~L~w~~----~~~~C~~C~~SgG-~C 77 (94)
T PF14380_consen 19 SDLAGSCQKSVVVPVLGSAVDSIDGSSGNYEEVLKKGFELEWNA----DSGDCRECEASGG-RC 77 (94)
T ss_pred cccCCcCCEEEEEEECchhhhccccchhHHHHHHhcCcEEEEeC----CCCcCcChhcCCC-Ee
Confidence 444444444444445555553322 4456655554 56665 7788999999987 44
No 100
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=92 Score=23.51 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 032514 69 SSNFVKRMEQAWLISQQPR 87 (139)
Q Consensus 69 ss~fakrmE~aW~ISqqpr 87 (139)
|.-|+.||-+||+|+--.+
T Consensus 4 spvFaRRLYla~Li~S~e~ 22 (95)
T COG4519 4 SPVFARRLYLAYLIDSGET 22 (95)
T ss_pred cHHHHHHHHHHHHHhcccc
Confidence 5589999999999986543
Done!