Query 032514
Match_columns 139
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 29240
Date Tue Mar 26 00:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exk_A DNAJ protein; extended 97.1 0.00025 8.4E-09 45.6 2.4 27 86-112 9-41 (79)
2 1exk_A DNAJ protein; extended 97.0 0.00013 4.5E-09 46.9 0.7 40 87-138 27-77 (79)
3 2ctt_A DNAJ homolog subfamily 97.0 0.0004 1.4E-08 47.4 2.6 26 86-111 26-57 (104)
4 2ctt_A DNAJ homolog subfamily 96.8 0.00093 3.2E-08 45.5 3.4 39 87-137 44-93 (104)
5 1nlt_A Protein YDJ1, mitochond 96.2 0.0021 7.1E-08 50.1 2.2 27 86-112 36-67 (248)
6 1nlt_A Protein YDJ1, mitochond 95.9 0.00088 3E-08 52.2 -1.1 43 85-137 51-108 (248)
7 2bx9_A Anti-trap, AT, tryptoph 92.1 0.033 1.1E-06 35.6 0.4 13 126-138 24-36 (53)
8 3lcz_A YCZA, inhibitor of trap 90.7 0.051 1.7E-06 34.7 0.2 23 88-110 9-34 (53)
9 3lcz_A YCZA, inhibitor of trap 89.9 0.057 1.9E-06 34.5 -0.1 28 99-138 9-36 (53)
10 2bx9_A Anti-trap, AT, tryptoph 82.6 0.69 2.4E-05 29.4 2.1 26 88-113 9-37 (53)
11 3ke2_A Uncharacterized protein 58.2 5.1 0.00017 29.9 2.1 19 69-88 16-34 (117)
12 3syx_A Sprouty-related, EVH1 d 36.3 71 0.0024 23.6 5.3 68 16-89 59-128 (130)
13 1a1t_A Nucleocapsid protein; s 28.5 9.5 0.00033 23.0 -0.5 20 81-100 5-24 (55)
14 1nc8_A Nucleocapsid protein; H 27.7 26 0.00089 19.0 1.3 17 84-100 2-18 (29)
15 1bor_A Transcription factor PM 26.6 16 0.00055 21.5 0.3 23 97-134 24-46 (56)
16 2ysl_A Tripartite motif-contai 25.7 13 0.00043 22.1 -0.3 29 97-134 38-66 (73)
17 2l5u_A Chromodomain-helicase-D 22.8 30 0.001 21.5 1.0 17 120-136 44-60 (61)
18 3nyb_B Protein AIR2; polya RNA 20.2 39 0.0013 22.7 1.3 46 87-136 4-57 (83)
No 1
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.09 E-value=0.00025 Score=45.61 Aligned_cols=27 Identities=30% Similarity=0.749 Sum_probs=17.0
Q ss_pred CCceecccCCCCCe------eeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G~------vECkWCaGTGfFi 112 (139)
++++.|..|.+.|. ..|..|.|+|..+
T Consensus 9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 41 (79)
T 1exk_A 9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ 41 (79)
T ss_dssp CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEE
T ss_pred ccceECCCCcccccCCCccCCCCCCCcCeEEEE
Confidence 45666777776663 4577777766554
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.04 E-value=0.00013 Score=46.91 Aligned_cols=40 Identities=30% Similarity=0.831 Sum_probs=33.6
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
.+..|+.|++.|.+ .|.-|.|+|..+ ..+|+.|.|+|.+-
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI------------KDPCNKCHGHGRVE 77 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC------------SSBCGGGTTSSEEE
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC------------CCcCCCCCCeEEEe
Confidence 36899999999965 799999999865 24799999999863
No 3
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.0004 Score=47.35 Aligned_cols=26 Identities=31% Similarity=0.828 Sum_probs=18.2
Q ss_pred CCceecccCCCCC------eeeeeeccceeee
Q 032514 86 PRPVSCSSCNSNG------HIDCKWCAGTGFF 111 (139)
Q Consensus 86 prPv~CssC~s~G------~vECkWCaGTGfF 111 (139)
++.+.|..|.|.| ...|..|.|+|+.
T Consensus 26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~ 57 (104)
T 2ctt_A 26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGME 57 (104)
T ss_dssp SCCEECSSSSSSSSCTTCCCEECSSSSSSCEE
T ss_pred eeeeECCCCcCCccCCCCCCccCCCCCCCEEE
Confidence 4567777777776 3567777777754
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00093 Score=45.52 Aligned_cols=39 Identities=31% Similarity=0.767 Sum_probs=33.3
Q ss_pred CceecccCCCCCee-----------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 87 RPVSCSSCNSNGHI-----------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 87 rPv~CssC~s~G~v-----------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+..|+.|++.|.+ .|.-|.|+|..| ..+|+.|.|+|.+
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v 93 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII------------ISPCVVCRGAGQA 93 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC------------SSCCSSSSSCSEE
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC------------CCcCCCCCCeeEE
Confidence 47899999999965 799999999876 2579999999976
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.15 E-value=0.0021 Score=50.09 Aligned_cols=27 Identities=26% Similarity=0.764 Sum_probs=20.6
Q ss_pred CCceecccCCCCC-----eeeeeeccceeeeE
Q 032514 86 PRPVSCSSCNSNG-----HIDCKWCAGTGFFI 112 (139)
Q Consensus 86 prPv~CssC~s~G-----~vECkWCaGTGfFi 112 (139)
.|.+.|..|.+.| ...|..|.|+|+.+
T Consensus 36 ~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~ 67 (248)
T 1nlt_A 36 NKQILCKECEGRGGKKGAVKKCTSCNGQGIKF 67 (248)
T ss_dssp EEEEECTTTTTCSBSTTTCCCCTTSSSSSCEE
T ss_pred eEEEeCCCCcCccCCCCCCccCCCCCCCcEEE
Confidence 3467888898888 46788888888653
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=95.87 E-value=0.00088 Score=52.18 Aligned_cols=43 Identities=37% Similarity=0.705 Sum_probs=34.6
Q ss_pred CCCceecccCCCCCee---------------eeeeccceeeeEecCeeeeeCCCCCccceeecceeee
Q 032514 85 QPRPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVW 137 (139)
Q Consensus 85 qprPv~CssC~s~G~v---------------ECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~ 137 (139)
.+.+..|+.|.|.|.+ .|.-|.|+|..|. ...+|..|.|+|.+
T Consensus 51 ~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~----------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 51 KGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID----------PKDRCKSCNGKKVE 108 (248)
T ss_dssp TTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC----------TTSBCSSSTTSCEE
T ss_pred CCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec----------cCCCCcccCCCceE
Confidence 3446899999999964 5899999997762 34689999999975
No 7
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=92.11 E-value=0.033 Score=35.55 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=9.2
Q ss_pred ccceeecceeeee
Q 032514 126 TTCVICAGKVVWF 138 (139)
Q Consensus 126 T~CvICsGKG~~~ 138 (139)
.+|+.|.|+|.+.
T Consensus 24 ~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 24 TPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEEE
T ss_pred CCCccCCCCccEE
Confidence 5688888877653
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=90.70 E-value=0.051 Score=34.70 Aligned_cols=23 Identities=35% Similarity=0.946 Sum_probs=13.5
Q ss_pred ceecccCCCCCe---eeeeeccceee
Q 032514 88 PVSCSSCNSNGH---IDCKWCAGTGF 110 (139)
Q Consensus 88 Pv~CssC~s~G~---vECkWCaGTGf 110 (139)
...|+.|.|+|. ..|+.|+|.|+
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~ 34 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGV 34 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSE
T ss_pred eccCcCCcccccCCCCcCCCCCCcEE
Confidence 345666666666 34555655554
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=89.88 E-value=0.057 Score=34.48 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.1
Q ss_pred eeeeeeccceeeeEecCeeeeeCCCCCccceeecceeeee
Q 032514 99 HIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKVVWF 138 (139)
Q Consensus 99 ~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGKG~~~ 138 (139)
...|.-|.|+|-.| ..+|+.|.|+|.+-
T Consensus 9 ~~~C~~C~GsG~~i------------~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGREE------------PEPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEET------------TEECTTTTTSSEEE
T ss_pred eccCcCCcccccCC------------CCcCCCCCCcEEEE
Confidence 35799999999876 16899999999863
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=82.63 E-value=0.69 Score=29.37 Aligned_cols=26 Identities=35% Similarity=0.948 Sum_probs=21.9
Q ss_pred ceecccCCCCCee---eeeeccceeeeEe
Q 032514 88 PVSCSSCNSNGHI---DCKWCAGTGFFIL 113 (139)
Q Consensus 88 Pv~CssC~s~G~v---ECkWCaGTGfFil 113 (139)
...|+.|.|.|.+ .|+-|.|+|..+.
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 4689999999964 6999999998764
No 11
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=58.23 E-value=5.1 Score=29.87 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHhccCCCc
Q 032514 69 SSNFVKRMEQAWLISQQPRP 88 (139)
Q Consensus 69 ss~fakrmE~aW~ISqqprP 88 (139)
++.|..||..||+|+. .+|
T Consensus 16 ~~sF~RRLyla~lId~-~~~ 34 (117)
T 3ke2_A 16 HKAFLRKLYLAHLMDD-ARH 34 (117)
T ss_dssp HHHHHHHHHHHHHHHH-SCC
T ss_pred cHHHHHHHHHHHHHhc-CCC
Confidence 4689999999999998 776
No 12
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=36.32 E-value=71 Score=23.57 Aligned_cols=68 Identities=13% Similarity=-0.031 Sum_probs=44.8
Q ss_pred EEeeeccccccceeeeeccCCcEEeeCC--CCcccccccccccceeeeeecCccchHHHHHHHHHHHHhccCCCce
Q 032514 16 DVVTKSIDKKMDFALLTRKSPMRVVPRG--TSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPV 89 (139)
Q Consensus 16 ~~~~ks~~~~~~~~~~~~~~~~~~~p~g--~~~~~~~~r~~~~~v~as~vds~~sss~fakrmE~aW~ISqqprPv 89 (139)
|+-.|.-|++..+| .+...++.+-.-- --.++-.++++|| .+.|+|.+..|++-|++|...=.++.|.
T Consensus 59 Ivg~r~~d~~vvin-c~I~~~l~Ynkatp~FHqWrd~~~~yGL-----~F~S~~dA~~F~~~~~~Al~~L~~g~~~ 128 (130)
T 3syx_A 59 IRGERLRDKMVVLE-CMLKKDLIYNKVTPTFHHWKIDDKKFGL-----TFQSPADARAFDRGIRRAIEDISQGCPE 128 (130)
T ss_dssp EEEEETTTCCEEEE-EECCTTCEEEEEETTEEEEEETTEEEEE-----EESSHHHHHHHHHHHHHHHHGGGSCC--
T ss_pred EEEEecCCCeEEEe-eeecCCceEEecccccccccccCeEeec-----ccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44445568887777 7777788753211 1123333355554 6788999999999999999887777654
No 13
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=28.54 E-value=9.5 Score=22.97 Aligned_cols=20 Identities=35% Similarity=0.762 Sum_probs=15.5
Q ss_pred HhccCCCceecccCCCCCee
Q 032514 81 LISQQPRPVSCSSCNSNGHI 100 (139)
Q Consensus 81 ~ISqqprPv~CssC~s~G~v 100 (139)
....+.++..|-.|...||.
T Consensus 5 ~f~g~~~~~~C~~Cg~~GH~ 24 (55)
T 1a1t_A 5 NFRNQRKTVKCFNCGKEGHI 24 (55)
T ss_dssp GGGGGGGTCBCTTTCCBSSC
T ss_pred ccCCCCCCcceeeeCCCCcC
Confidence 34556678899999999985
No 14
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=27.66 E-value=26 Score=19.03 Aligned_cols=17 Identities=35% Similarity=0.806 Sum_probs=13.4
Q ss_pred cCCCceecccCCCCCee
Q 032514 84 QQPRPVSCSSCNSNGHI 100 (139)
Q Consensus 84 qqprPv~CssC~s~G~v 100 (139)
||.+++.|-.|.-.||.
T Consensus 2 ~~r~~~~C~nCgk~GH~ 18 (29)
T 1nc8_A 2 QQRKVIRCWNCGKEGHS 18 (29)
T ss_dssp CCCCCCBCTTTSCBSSC
T ss_pred CCCCCCEEEECCccccC
Confidence 45557999999999884
No 15
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.59 E-value=16 Score=21.46 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.4
Q ss_pred CCeeeeeeccceeeeEecCeeeeeCCCCCccceeecce
Q 032514 97 NGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK 134 (139)
Q Consensus 97 ~G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGK 134 (139)
-||.-|.-|.-. ....||+|+..
T Consensus 24 CgH~fC~~Ci~~---------------~~~~CP~Cr~~ 46 (56)
T 1bor_A 24 CLHTLCSGCLEA---------------SGMQCPICQAP 46 (56)
T ss_dssp TSCCSBTTTCSS---------------SSSSCSSCCSS
T ss_pred CCCcccHHHHcc---------------CCCCCCcCCcE
Confidence 378888888655 25678998764
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.69 E-value=13 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=20.0
Q ss_pred CCeeeeeeccceeeeEecCeeeeeCCCCCccceeecce
Q 032514 97 NGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK 134 (139)
Q Consensus 97 ~G~vECkWCaGTGfFilGdnmlCevpsrnT~CvICsGK 134 (139)
.||.-|..|.-. ++ +...++..||+|+..
T Consensus 38 CgH~fC~~Ci~~-~~--------~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 38 CGHNFCLKCITQ-IG--------ETSCGFFKCPLCKTS 66 (73)
T ss_dssp TCCEEEHHHHHH-HC--------SSSCSCCCCSSSCCC
T ss_pred CCChhhHHHHHH-HH--------HcCCCCCCCCCCCCc
Confidence 489999999765 11 122467789999754
No 17
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=22.84 E-value=30 Score=21.48 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=13.9
Q ss_pred eCCCCCccceeecceee
Q 032514 120 QVPSRNTTCVICAGKVV 136 (139)
Q Consensus 120 evpsrnT~CvICsGKG~ 136 (139)
++|...-.|+.|..+|.
T Consensus 44 ~~p~g~W~C~~C~~~g~ 60 (61)
T 2l5u_A 44 KAPEGKWSCPHCEKEGI 60 (61)
T ss_dssp SCCCSSCCCTTGGGGSC
T ss_pred CCCCCceECcccccccc
Confidence 56778889999998875
No 18
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.16 E-value=39 Score=22.67 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=22.4
Q ss_pred CceecccCCCCCeee--ee------eccceeeeEecCeeeeeCCCCCccceeecceee
Q 032514 87 RPVSCSSCNSNGHID--CK------WCAGTGFFILGDNMLCQVPSRNTTCVICAGKVV 136 (139)
Q Consensus 87 rPv~CssC~s~G~vE--Ck------WCaGTGfFilGdnmlCevpsrnT~CvICsGKG~ 136 (139)
+.+.|..|...||.+ |. -|..+|-. .--|..|.....|..|-.+|-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~----~~~c~~p~~~~~CYnCG~~GH 57 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEK----AKPKVLPFHTIYCYNCGGKGH 57 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSS
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcc----cccccCCCCCCeecccCCCCc
Confidence 467899999999974 43 23333221 112555656788999988873
Done!