BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032515
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 220 bits (560), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 120/149 (80%), Gaps = 14/149 (9%)
Query: 2 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
++ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLP
Sbjct: 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 62 EEYPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 107
EEYPMAAPK LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD
Sbjct: 62 EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
PL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 122 PLANDVAEQWKTNEAQAIETARAWTRLYA 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/147 (72%), Positives = 119/147 (80%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
+ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEE
Sbjct: 5 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 64
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPMAAPK LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 65 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 124
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 125 ANDVAEQWKTNEAQAIETARAWTRLYA 151
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/147 (72%), Positives = 119/147 (80%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
+ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEE
Sbjct: 2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 61
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPMAAPK LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 62 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 122 ANDVAEQWKTNEAQAIETARAWTRLYA 148
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/147 (72%), Positives = 119/147 (80%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
+ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEE
Sbjct: 7 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 66
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPMAAPK LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 67 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 126
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 127 ANDVAEQWKTNEAQAIETARAWTRLYA 153
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 219 bits (557), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/146 (73%), Positives = 118/146 (80%), Gaps = 14/146 (9%)
Query: 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 64
LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEY
Sbjct: 1 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 65 PMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLS 110
PMAAPK LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+
Sbjct: 61 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 111 ENIAKHWKTNEAEAVETAKEWTRLYA 136
++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 121 NDVAEQWKTNEAQAIETARAWTRLYA 146
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 186 bits (473), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 113/147 (76%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPM APK LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 64 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 123
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ W NE A A+EWT+LYA
Sbjct: 124 ANDVAEDWIKNEQGAKAKAREWTKLYA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 186 bits (472), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 113/147 (76%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPM APK LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ W NE A A+EWT+LYA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 182 bits (463), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 112/147 (76%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPM APK LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ W NE A A+EWT+LYA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 182 bits (462), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 112/147 (76%), Gaps = 14/147 (9%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109
YPM APK LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136
+ ++A+ W NE A A+EWT+LYA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 179 bits (455), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 107/147 (72%), Gaps = 14/147 (9%)
Query: 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP 65
+PRRI KETQ L +EP PGI A P +N R+FN++I GP +PYEGG +KLELFLPE+YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 66 MAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSE 111
M PK LGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 62 MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS 121
Query: 112 NIAKHWKTNEAEAVETAKEWTRLYASG 138
+A+H+K ++ +A A++W ++YA+
Sbjct: 122 KVAEHFKQDKNDAEHVARQWNKIYANN 148
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 179 bits (454), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 107/147 (72%), Gaps = 14/147 (9%)
Query: 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP 65
+PRRI KETQ L +EP PGI A P +N R+FN++I GP +PYEGG +KLELFLPE+YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 66 MAAPK--------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSE 111
M PK LGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 62 MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS 121
Query: 112 NIAKHWKTNEAEAVETAKEWTRLYASG 138
+A+H+K ++ +A A++W ++YA+
Sbjct: 122 KVAEHFKQDKNDAEHVARQWNKIYANN 148
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY GGVF L + P +YP
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL I
Sbjct: 84 PPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 143
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A +K++ +TA+EW++ YA
Sbjct: 144 AHLYKSDRMRYDQTAREWSQKYA 166
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RRI KE + + +P SA P D++ ++ I GP SPY+GG+F L++ P +YP
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
AP++ G ICLDILKD+WSPAL + VLLSI +LL+ PNP DPL +
Sbjct: 67 APRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEV 126
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A + N+ + +TA+EWTR+YA
Sbjct: 127 ANVLRANKKQFEDTAREWTRMYA 149
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI +E L +P SA P D++ ++ I+GP SPY GGVF L + P +YP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDDPL I
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A +KT+ + +A+EWTR YA
Sbjct: 124 AHVYKTDRSRYELSAREWTRKYA 146
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 82 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 142 ARIYKTDREKYNRIAREWTQKYA 164
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYA 146
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE Q L +P SA P D++ ++ I+GP +SPY+GGVF L + P +YP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 127 ARIYKTDRERYNQLAREWTQKYA 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 128
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 129 ARIYKTDREKYNRIAREWTQKYA 151
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP SPY GGVF L + P +YP
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDILKD+WSPAL + VLLSI +LL+ NPDDPL I
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEI 124
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A +KT+ + TA+EWT+ YA
Sbjct: 125 AHIYKTDRPKYEATAREWTKKYA 147
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE Q L +P SA P D++ ++ I+GP+ SPY+GGVF L + P +YP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 69 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 128
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A +K+++ + A+EWT+ YA
Sbjct: 129 AHIYKSDKEKYNRLAREWTQKYA 151
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 14/148 (9%)
Query: 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
NS +RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P
Sbjct: 9 NSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 68
Query: 63 EYPMAAPKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 108
+YP PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDP
Sbjct: 69 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 128
Query: 109 LSENIAKHWKTNEAEAVETAKEWTRLYA 136
L IA+ ++T+ + A+EWT+ YA
Sbjct: 129 LVPEIARIYQTDREKYNRIAREWTQKYA 156
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 14/148 (9%)
Query: 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
NS +RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 68
Query: 63 EYPMAAPKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 108
+YP PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDP
Sbjct: 69 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 128
Query: 109 LSENIAKHWKTNEAEAVETAKEWTRLYA 136
L IA+ +KT+ + ++EWT+ YA
Sbjct: 129 LVPEIARIYKTDRDKYNRISREWTQKYA 156
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + ++EWT+ YA
Sbjct: 126 ARIYKTDRDKYNRISREWTQKYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 72 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 131
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + ++EWT+ YA
Sbjct: 132 ARIYKTDRDKYNRISREWTQKYA 154
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +W PAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 63 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + ++EWT+ YA
Sbjct: 123 ARIYKTDRDKYNRISREWTQKYA 145
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLD L+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ +GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 14/146 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYASGA 139
A+ +KT+ + A+EWT+ YA G
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAMGG 151
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 83/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL+I VLLSI +LL PNPDDPL I
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 123 ARIYKTDREKYNRIAREWTQKYA 145
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 67 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 127 ARIYKTDREKYNRIAREWTQKYA 149
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 118 bits (296), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 82/144 (56%), Gaps = 14/144 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE + +P P SA P DN+ + ILGP S YEGGVF L++ EYP
Sbjct: 51 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 110
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +I
Sbjct: 111 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 170
Query: 114 AKHWKTNEAEAVETAKEWTRLYAS 137
A + TN AE A++WT+ YA+
Sbjct: 171 ATQYMTNRAEHDRMARQWTKRYAT 194
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 82 PPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 142 ARIYKTDREKYNRIAREWTQKYA 164
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 82/144 (56%), Gaps = 14/144 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE + +P P SA P DN+ + ILGP S YEGGVF L++ +YP
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +I
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYAS 137
A + TN AE A++WT+ YA+
Sbjct: 126 ATQYMTNRAEHDRMARQWTKRYAT 149
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 64 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + ++EWT+ YA
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYA 146
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 125
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +K+++ + A+EWT+ YA
Sbjct: 126 AQIYKSDKEKYNRHAREWTQKYA 148
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +K+++ + A+EWT+ YA
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYA 152
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 82 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 141
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +K+++ + A+EWT+ YA
Sbjct: 142 AQIYKSDKEKYNRHAREWTQKYA 164
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P A P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +KT+ + A+EWT+ YA
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYA 146
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 115 bits (289), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 83/145 (57%), Gaps = 15/145 (10%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
R+ KE + + +E I A + N + I GP +PYEGG F L + +P +YP
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 69 PKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G ICLD+LK++WSPAL IRT LLSIQALLS P PDDP +
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 114 AKHWKTNEAEAVETAKEWTRLYASG 138
AK +K N A V+TA WT+ +A+G
Sbjct: 147 AKMYKENHALFVKTASVWTKTFATG 171
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 18/146 (12%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
R+ +E L +EP PGI+ +D M ILG +PYE GVFKLE+ +PE YP
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 69 PKL--------------GRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPDDPLS 110
P++ GRICLD+LK W P+L I TVL SIQ L+S PNPDDPL
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 111 ENIAKHWKTNEAEAVETAKEWTRLYA 136
+I+ +K N+ ++ A++WT +A
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 16/146 (10%)
Query: 8 RRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+RI+KE Q + +PA I+ SE ++ + LGP +PYEGG F +++ +P EYP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 67 AAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSE 111
PK+ G ICLDILK+ WSP + +++ L+S+QALL +P P+DP
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 112 NIAKHWKTNEAEAVETAKEWTRLYAS 137
+A+H+ + +TA WTRLYAS
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYAS 149
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
S+ +RI+KE Q + +PA I+ SE ++ + LGP +PYEGG F +++ +P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 63 EYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 107
EYP PK+ G ICLDIL++ WSP + +++ L+S+QALL +P P+D
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYAS 137
P +A+H+ + +TA WTRLYAS
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYAS 150
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P A P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
PK+ G I LDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 70 PPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 114 AKHWKTNEAEAVETAKEWTRLYA 136
A+ +K+++ + A+EWT+ YA
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYA 152
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ +R+ + PG+SASP DN+ +N MI+GP +PYE G F+L L EEYP
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
P + G ICLDIL+++W+P + ++L SIQ+L + PNP P +
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126
Query: 114 AKHWKTNEAEAVETAKE 130
A +K ++++ V+ KE
Sbjct: 127 ATLFKDHKSQYVKRVKE 143
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 14/130 (10%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ +RL +P G+S +PSE+N+ +N +I GP +P+E G FKL + EEYP
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
P + G ICLDIL+++WSP + ++L SIQ+LL PNP+ P +
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQA 126
Query: 114 AKHWKTNEAE 123
A+ ++ N+ E
Sbjct: 127 AQLYQENKRE 136
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 102 bits (254), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 11 IKETQRLL-SEPAP------GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
I++ QR SEPA G+SA ++ + I GP +PYEGG F L++ +P +
Sbjct: 44 IQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD 103
Query: 64 YPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 108
YP PK+ G ICLDILK +WSPAL IRT LLSIQA+L+ P P DP
Sbjct: 104 YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDP 163
Query: 109 LSENIAKHWKTNEAEAVETAKEWTRLYA 136
+AK N V+TAK WT +A
Sbjct: 164 QDAEVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 14/130 (10%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ ++L +P G+S +P+EDN+ + +I GP ++P+E G FKL L EEYP
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
P + G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 129
Query: 114 AKHWKTNEAE 123
A+ ++ N E
Sbjct: 130 AQLYQENRRE 139
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 14/130 (10%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ ++L +P G+S +P+EDN+ + +I GP ++P+E G FKL L EEYP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
P + G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 114 AKHWKTNEAE 123
A+ ++ N E
Sbjct: 127 AQLYQENRRE 136
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 76/130 (58%), Gaps = 14/130 (10%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+R++++ +RL +P GIS +P ++N+ +N +I GP +P++GG FKL L E+YP
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
P + G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 114 AKHWKTNEAE 123
A+ + ++ E
Sbjct: 127 ARMYSESKRE 136
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 18/150 (12%)
Query: 5 NLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
NLP II KE L ++P GI P+E+++ V I GP +PY GG+F+++L L
Sbjct: 9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 68
Query: 61 PEEYPMAAPKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPD 106
+++P + PK G IC+++LK W+ L IR VLL+I+ LL PNP+
Sbjct: 69 GKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPE 128
Query: 107 DPLSENIAKHWKTNEAEAVETAKEWTRLYA 136
L+E + N E A+ T ++
Sbjct: 129 SALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 15/140 (10%)
Query: 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 64
++ +R+ +E + LL PGI+A P DN+ + + GP + YE +KL L P +Y
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 65 PMAAPKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLS 110
P P + G ICLDILK+ W+ + +RT+LLS+Q+LL PN PL+
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 111 ENIAKHWKTNEAEAVETAKE 130
A W +N+ E + E
Sbjct: 129 AQAADMW-SNQTEYKKVLHE 147
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 19/157 (12%)
Query: 1 MANSNLP-RRIIKETQRLLSEPAPG---ISASPSEDNMRYFNVMILGPTQSPYEGGVFKL 56
MA +N+ +RI +E + +L I ++N I GP +PYEGG ++L
Sbjct: 3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62
Query: 57 ELFLPEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLS 101
E+ +PE YP PK+ G ICLDILKD+W+ A+ +RTVLLS+QALL+
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 122
Query: 102 APNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138
A PDDP +A +K N +TA+ W +YA
Sbjct: 123 AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 59 FLPEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAP 103
+PE YP PK+ G ICLDILKD+W+ A+ +RTVLLS+QALL+A
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 173
Query: 104 NPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138
PDDP +A +K N +TA+ W +YA
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 18 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 77
Query: 59 FLPEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAP 103
+PE YP PK+ G ICLDILKD+W+ A+ +RTVLLS+QALL+A
Sbjct: 78 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 137
Query: 104 NPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138
PDDP +A +K N +TA+ W +YA
Sbjct: 138 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 172
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 59 FLPEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAP 103
+PE YP PK+ G ICLDILKD+W+ A+ +RTVLLS+QALL+A
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121
Query: 104 NPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138
PDDP +A +K N +TA+ W +YA
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 3 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 62
Query: 59 FLPEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSAP 103
+PE YP PK+ G ICLDILKD+W+ A+ +RTVLLS+QALL+A
Sbjct: 63 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 122
Query: 104 NPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138
PDDP +A +K N +TA+ W +YA
Sbjct: 123 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 157
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+R+ +E L+ GISA P DN+ + I G + YE +KL L P YP
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 68 APKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 113
AP + G I LDILK+KWS +RT+LLSIQ+LL PN D PL+ +
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 114 AKHWK 118
A+ WK
Sbjct: 153 AELWK 157
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 28/150 (18%)
Query: 8 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+R++KE Q+L+ + PGI A P SE+N+ ++ +I GP +PY GVF +L P++YP+
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 67 AAPKL--------------GRICLDIL-------------KDKWSPALQIRTVLLSIQAL 99
+ PKL G +C+ IL +++WSP + +LLS+ ++
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126
Query: 100 LSAPNPDDPLSENIAKHWKTNEAEAVETAK 129
LS PN + + + W+ N E K
Sbjct: 127 LSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 20/150 (13%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++L R+ T+ +++ ++ ++D F+VM GP + YEGG++K+ + LP++
Sbjct: 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQD----FDVMFHGPNGTAYEGGIWKVHVTLPDD 57
Query: 64 YPMAAPKL---------------GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDD 107
YP A+P + G +CLD++ W+P + V + + LL+ PNP D
Sbjct: 58 YPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSD 117
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYAS 137
PL+ + A ++ E KE+ +LYAS
Sbjct: 118 PLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 28/137 (20%)
Query: 12 KETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70
++ L P G SA +DN Y + V+I+GP + YEGGVFK L P++YP+ PK
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 71 L--------------GRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAP 103
+ G +C+ IL +++W P + T+++S+ ++L+ P
Sbjct: 84 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 143
Query: 104 NPDDPLSENIAKHWKTN 120
N D P + + AK W+ +
Sbjct: 144 NGDSPANVDAAKEWRED 160
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 29/158 (18%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
MA + L +R++ E ++L P GI A P +E+N + +I+GP + +E GVF L
Sbjct: 4 MAGTAL-KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 60 LPEEYPMAAPKL--------------GRICLDILK-------------DKWSPALQIRTV 92
P +YP++ PK+ GR+C+ IL ++WSP + +
Sbjct: 63 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 122
Query: 93 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 130
LLS+ ++L+ PN + + + +K W+ + + + AK+
Sbjct: 123 LLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 160
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 29/158 (18%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
MA + L +R++ E ++L P GI A P +E+N + +I+GP + +E GVF L
Sbjct: 3 MAGTAL-KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 60 LPEEYPMAAPKL--------------GRICLDILK-------------DKWSPALQIRTV 92
P +YP++ PK+ GR+C+ IL ++WSP + +
Sbjct: 62 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 121
Query: 93 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 130
LLS+ ++L+ PN + + + +K W+ + + + AK+
Sbjct: 122 LLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 29/158 (18%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
MA + L +R++ E ++L P GI A P +E+N + +I+GP + +E GVF L
Sbjct: 6 MAGTAL-KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 64
Query: 60 LPEEYPMAAPKL--------------GRICLDILK-------------DKWSPALQIRTV 92
P +YP++ PK+ GR+C+ IL ++WSP + +
Sbjct: 65 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 124
Query: 93 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 130
LLS+ ++L+ PN + + + +K W+ + + + AK+
Sbjct: 125 LLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 162
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 28/151 (18%)
Query: 8 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+R++ E ++L P GI A P +E+N + +I+GP + +E GVF L P +YP+
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 67 AAPKL--------------GRICLDILK-------------DKWSPALQIRTVLLSIQAL 99
+ PK+ GR+C+ IL ++WSP + +LLS+ ++
Sbjct: 66 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 125
Query: 100 LSAPNPDDPLSENIAKHWKTNEAEAVETAKE 130
L+ PN + + + +K W+ + + + AK+
Sbjct: 126 LAEPNDESGANVDASKMWRDDREQFYKIAKQ 156
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 21 PAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKL-------- 71
P G SA +DN Y + V+++GP + YEGG FK L P +YP PK+
Sbjct: 19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWH 78
Query: 72 ------GRICLDILKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSEN 112
G +C+ IL D +W P + T+LLS+ ++L+ PN + P + +
Sbjct: 79 PNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVD 138
Query: 113 IAKHWKTNEAEAVETAKEWTR 133
AK + N AE + + R
Sbjct: 139 AAKMQRENYAEFKKKVAQCVR 159
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 37 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKL---------------GRICLDILKD 81
F V GP +PYEGGV+K+ + LP++YP +P + G +CLD++
Sbjct: 53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
Query: 82 KWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137
W+ + + S + LL+ PNP DPL+ + A + E + KE+ + YA+
Sbjct: 113 TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 41 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKL--------------GRICLDILK-DKWSP 85
++ P PY+ G F++E+ P EYP PK+ G++CL ++ + W P
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 97
Query: 86 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136
A + V+ S+ AL++ P P+ PL ++A+ + + + + A+E+T+ Y
Sbjct: 98 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 41 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKL--------------GRICLDILK-DKWSP 85
++ P PY+ G F++E+ P EYP PK+ G++CL ++ + W P
Sbjct: 40 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 99
Query: 86 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136
A + V+ S+ AL++ P P+ PL ++A+ + + + + A+E+T+ Y
Sbjct: 100 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 71 YPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 130
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 131 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 130
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 131 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 129
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 130 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 71 YPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 130
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 131 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 129
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 130 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 9 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 69 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 128
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 129 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 13 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 72
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 73 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 132
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 133 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 127
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 128 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKL--------------GRICLDILKDKWSP 85
+I+ P + Y G L E YP+ PK+ G +CL+IL++ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 86 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 139
AL +++++ + L PNP+DPL+++ AK E E E RL SG
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEA----VRLTMSGG 177
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQS 130
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 131 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQA 130
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 131 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
RI K+ L IS S +D + + +++ P + Y+ G F + + YP
Sbjct: 10 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDP 67
Query: 69 PKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 114
PK+ G +CL+IL++ W P L I +++ +Q L PNP+DPL++ A
Sbjct: 68 PKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAA 127
Query: 115 KHWKTN 120
+ + N
Sbjct: 128 EVLQNN 133
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
M + + + ++ E + L EP G + E ++ + V I GP + YEGG FK L
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 60 LPEEYPMAAPKL--------------GRICLDILK-------------DKWSPALQIRTV 92
P +YP + P G +C+ IL ++W+P +RT+
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 93 LLSIQALLSAPNPDDPLSEN---IAKHWKTNEAEAVE 126
LLS+ +LL+ PN P + + + + WK ++ + E
Sbjct: 123 LLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 159
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E ++ + G A P + ++ + V I G ++ +EGG++KL + PEE
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 64 YPMAAPKL--------------GRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDD 107
YP PK G +CL IL ++ W PA+ I+ +LL IQ LL PN
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS 133
Query: 108 PLSENIAKHWKTNEAE 123
P +K ++ E
Sbjct: 134 PAQTEAYTMFKKDKVE 149
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 64 YPMAAPKL--------------GRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G + L IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 127
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 128 PAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+R+ ++ R+ +P P I A P N+ ++ ++ GP +PYEGG + +L P E+P
Sbjct: 17 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76
Query: 68 APKL------------GRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 105
P + R+CL D D W+PA + T+L + + + P
Sbjct: 77 PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 31/150 (20%)
Query: 8 RRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+ ++ E + L EP G + E ++ + V I GP + YEGG FK L P +YP
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 67 AAPKL--------------GRICLDILK-------------DKWSPALQIRTVLLSIQAL 99
+ P G +C+ IL ++W+P +RT+LLS+ +L
Sbjct: 67 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 126
Query: 100 LSAPNPDDPLSEN---IAKHWKTNEAEAVE 126
L+ PN P + + + + WK ++ + E
Sbjct: 127 LNEPNTFSPANVDASVMYRKWKESKGKDRE 156
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 64 YPMAAPKL--------------GRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDD 107
YP + PK G + L IL++ W PA+ I+ +LL IQ LL+ PN D
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 127
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
P + N E + + + +A
Sbjct: 128 PAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
M N+N RI KE L+ P + +N+R + V +G + Y V+KL++
Sbjct: 4 MGNAN--YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIF 61
Query: 61 PEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSA 102
P++YP+ P + G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 62 PDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKL---------------GRICL 76
D + F V GP +PYE G + L + LP +YP +P + G +CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 77 DILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSENIAK 115
D++ W+P Q+ + + + LL PNP DPL+ A
Sbjct: 95 DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 8 RRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
+R+ +E ++ + G A P + +++ + I G + + GGV+ + + P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 63 EYPMAAPKL--------------GRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 106
EYP PK+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 107 DPLSENIAKHWKTNEAE 123
P E + + N+AE
Sbjct: 129 SPAQEPAWRSFSRNKAE 145
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 8 RRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
+R+ +E ++ + G A P + +++ + I G + + GGV+ + + P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 63 EYPMAAPKL--------------GRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 106
EYP PK+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 107 DPLSENIAKHWKTNEAE 123
P E + + N+AE
Sbjct: 127 SPAQEPAWRSFSRNKAE 143
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
R++KE + L +P P + S+D N+ ++ ++L P Q PY F L + P EYP
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 66
Query: 68 APKL--------------GRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 112
P + G+ICL I+ + W P + VL ++ L++ PN +PL +
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 126
Query: 113 IAKHWKTNEAEAVETAKEWT 132
+A N + A+E+T
Sbjct: 127 LADLLTQNPELFRKNAEEFT 146
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
R++KE + L +P P + S+D N+ ++ ++L P Q PY F L + P EYP
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 63
Query: 68 APKL--------------GRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 112
P + G+ICL I+ + W P + VL ++ L++ PN +PL +
Sbjct: 64 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 123
Query: 113 IAKHWKTNEAEAVETAKEWT 132
+A N + A+E+T
Sbjct: 124 LADLLTQNPELFRKNAEEFT 143
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
RI K+ L IS S +D + + +++ P + Y+ G F + + YP
Sbjct: 30 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDP 87
Query: 69 PKL--------------GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 114
PK+ G + L+IL++ W P L I +++ +Q L PNP+DPL++ A
Sbjct: 88 PKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAA 147
Query: 115 KHWKTN 120
+ + N
Sbjct: 148 EVLQNN 153
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 29/147 (19%)
Query: 9 RIIKETQRLL---------SEPAPGI--SASP-SEDNMRYFNVMILGPTQSPYEGGVFKL 56
RI+KE + +L + P GI S +P E ++ + +I GP+ +PYE F++
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 57 ELFLPEEYPMAAPKL----------------GRICLDILK-DKWSPALQIRTVLLSIQAL 99
+ +P YPM PK+ G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 100 LSAPNPDDPLSENIAKHWKTNEAEAVE 126
L P D PL +I + + A +
Sbjct: 130 LREPVSDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 30/155 (19%)
Query: 1 MANSNLPRRIIKETQRLL---------SEPAPGI--SASP-SEDNMRYFNVMILGPTQSP 48
MA++ + RI+KE + +L + P GI S +P E ++ + +I GP+ +P
Sbjct: 3 MADTCM-SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61
Query: 49 YEGGVFKLELFLPEEYPMAAPKL----------------GRICLDILK-DKWSPALQIRT 91
YE F++ + +P YPM PK+ G ICL+ILK ++W+P +
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLH 121
Query: 92 VLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVE 126
+ ++ LL P D PL +I + + A +
Sbjct: 122 CVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
+ N+N RI KE L P + N+R + V +G + Y V+K+++
Sbjct: 18 LGNANY--RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIF 75
Query: 61 PEEYPMAAPKL---------------GRICLDILKDKWSPALQIRTVLLSIQALLSA 102
P+ YP+ P + G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 76 PDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSS 132
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 30/155 (19%)
Query: 1 MANSNLPRRIIKETQRLL---------SEPAPGI--SASP-SEDNMRYFNVMILGPTQSP 48
MA++ + RI+KE + +L + P GI S +P E ++ + +I GP+ +P
Sbjct: 3 MADTCM-SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61
Query: 49 YEGGVFKLELFLPEEYPMAAPKL----------------GRICLDILK-DKWSPALQIRT 91
YE F++ + +P YPM PK+ G ICL+ILK ++W+P +
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLH 121
Query: 92 VLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVE 126
+ ++ LL P D PL +I + + A +
Sbjct: 122 CVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQ 156
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPS--EDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
+++ +R+ KE L ++P PG++ + ++++ + V + G + YEG F+L
Sbjct: 21 ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 80
Query: 62 EEYPMAAPKL----------------GRICLDILKDKWSPALQIRTVLLSIQALLS 101
YP +P++ G ICL IL + WSPAL +++V LSI ++LS
Sbjct: 81 SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 24 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY---------------PMAA 68
GI+A P ++M + V I G S ++G VF+L + EY P
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 69 PKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 115
P G+ C+D L + KW+ + ++LL++Q +LS P ++P++ A+
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 150
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 27/102 (26%)
Query: 31 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKL------------------- 71
E+ + V+I GP +PY G F+ +++ P++YP + P +
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 72 GRICLDIL-------KDKWSPAL-QIRTVLLSIQALLSAPNP 105
G++CL IL ++KW+P VL+S+Q+L+ P
Sbjct: 166 GKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 10 IIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
++KE L + P P + + F + + P + Y+GG F+ E +P+ Y M
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 69 PKL--------------GRICLDILKDK------WSPALQIRTVLLSIQALLSA-PNPDD 107
PK+ G ICL +L++ W+P ++ V+ + +L + N DD
Sbjct: 78 PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDD 137
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
PL+ A+H ++ + ++ + YA
Sbjct: 138 PLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 10 IIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
++KE L + P P + + F + + P + Y+GG F+ E +P+ Y M
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 69 PKL--------------GRICLDILKDK------WSPALQIRTVLLSIQALLSA-PNPDD 107
PK+ G ICL +L++ W+P ++ V+ + +L + N DD
Sbjct: 78 PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDD 137
Query: 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136
PL+ A+H ++ + ++ + YA
Sbjct: 138 PLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 27 ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRI------CLD--- 77
A + M +N ILGP S +E ++ L + YP + PK+ I C++
Sbjct: 32 ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 91
Query: 78 --------ILKDKWSPALQIRTVLLSIQALLSAP 103
L+D W A + T+LL ++ ++ P
Sbjct: 92 GEVQTDFHTLRD-WKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 27 ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRI------CLD--- 77
A + M +N ILGP S +E ++ L + YP + PK+ I C++
Sbjct: 31 ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 90
Query: 78 --------ILKDKWSPALQIRTVLLSIQALLSAP 103
L+D W A + T+LL ++ ++ P
Sbjct: 91 GEVQTDFHTLRD-WKRAYTMETLLLDLRKEMATP 123
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 299 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 356
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 357 EKLPWSKAWEL 367
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 299 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 356
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 357 EKLPWSKAWEL 367
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 300 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 357
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 358 EKLPWSKAWEL 368
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 300 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 357
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 358 EKLPWSKAWEL 368
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 301 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 358
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 359 EKLPWSKAWEL 369
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 302 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 359
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 360 EKLPWSKAWEL 370
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ G VF ++ + L + +P +A P+L RI +DI
Sbjct: 277 VVAATLQDIIRRFKASKFGSTRGA--GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 334
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 335 EKLPWSKAWEL 345
>pdb|1GUX|A Chain A, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|A Chain A, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|C Chain C, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|E Chain E, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|G Chain G, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 218
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYE-----GGVFKLELFLP 61
P R + T + L S PSE+ + YFN + P +S + G +FK
Sbjct: 3 PVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFK------ 56
Query: 62 EEYPMAAPKLGRICLDILKDKWSPALQI-----RTVLLSIQALLSAPNPDDPLSENI 113
E++ A +G+ C++I ++ +++ ++L S + LS N L++NI
Sbjct: 57 EKF---AKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNI 110
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I+GP +P GG+ L + L +E + ICL
Sbjct: 90 DLIREYRVAIMGPLTTPVGGGIRSLNVALRQELDL------YICL 128
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 23 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
PG+ PS + Y ++I P + ++GG+ + ++L EY A+P
Sbjct: 159 PGLGVRPSNE---YRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASP 202
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 23 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
PG+ PS + Y ++I P + ++GG+ + ++L EY A+P
Sbjct: 158 PGLGVRPSNE---YRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASP 201
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAPK---LGRICLDILKD--------------K 82
MI+GP ++ YE ++ L++ +YP A P + +I ++ + + K
Sbjct: 49 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAK 108
Query: 83 WSPALQIRTVLLSIQALL 100
W + I+ VL ++ L+
Sbjct: 109 WQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAPK---LGRICLDILKD--------------K 82
MI+GP ++ YE ++ L++ +YP A P + +I ++ + + K
Sbjct: 43 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAK 102
Query: 83 WSPALQIRTVLLSIQALL 100
W + I+ VL ++ L+
Sbjct: 103 WQNSYSIKVVLQELRRLM 120
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAPK---LGRICLDILKD--------------K 82
MI+GP ++ YE ++ L++ +YP A P + +I ++ + + K
Sbjct: 44 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAK 103
Query: 83 WSPALQIRTVLLSIQALL 100
W + I+ VL ++ L+
Sbjct: 104 WQNSYSIKVVLQELRRLM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAPK---LGRICLDILKD--------------K 82
MI+GP ++ YE ++ L++ +YP A P + +I ++ + + K
Sbjct: 54 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAK 113
Query: 83 WSPALQIRTVLLSIQALL 100
W + I+ VL ++ L+
Sbjct: 114 WQNSYSIKVVLQELRRLM 131
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYE-----GGVFKLELFLP 61
P R + T + L S PSE+ + YFN + P +S + G +FK
Sbjct: 302 PVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFK------ 355
Query: 62 EEYPMAAPKLGRICLDILKDKWSPALQI-----RTVLLSIQALLSAPNPDDPLSENI 113
E++ A +G+ C++I ++ +++ ++L S + LS N L++NI
Sbjct: 356 EKF---AKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNI 409
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
MILGP ++ YE ++ L++ +YP A P
Sbjct: 46 MILGPPRTIYENRIYSLKIECGPKYPEAPP 75
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ +L + L +E + ICL
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRELNVALRQELDL------YICL 128
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ L + L +E + ICL
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL------YICL 128
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
MI+GP ++ YE ++ L++ +YP A P
Sbjct: 74 MIIGPPRTIYENRIYSLKIECGPKYPEAPP 103
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ L + L +E + ICL
Sbjct: 88 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL------YICL 126
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ L + L +E + ICL
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL------YICL 128
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ L + L +E + ICL
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL------YICL 128
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ L + L +E + ICL
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL------YICL 128
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICL 76
D +R + V I GP +P GG+ L + L +E + ICL
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL------YICL 128
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
MI+GP ++ YE ++ L++ +YP A P
Sbjct: 64 MIIGPPRTIYENRIYSLKIECGPKYPEAPP 93
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 25 ISASPSEDNMRYFNVMILGPTQSPYEGGVF-----KLELFLPEEYP-MAAPKLGRICLDI 78
+ A+ +D +R F G T+ VF ++ + L + +P +A P+L RI +DI
Sbjct: 299 VVAATLQDIIRRFKASKFGSTRGA--ATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDI 356
Query: 79 LKDKWSPALQI 89
K WS A ++
Sbjct: 357 EKLPWSKAWEL 367
>pdb|2X1I|A Chain A, Glycoside Hydrolase Family 77 4-Alpha-Glucanotransferase
From Thermus Brockianus
Length = 500
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 17 LLSEPAPGISASPSEDNMRYFNVMILGPT---QSPYE 50
+L E A G E RY+ V+ LGPT SPY+
Sbjct: 24 VLGEEARGFLRFLKEAGARYWQVLPLGPTGYGDSPYQ 60
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 23 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
PG+ P+ +Y ++I P + ++GG+ + +++ EY A P
Sbjct: 154 PGLGVRPA---TQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACP 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,217,599
Number of Sequences: 62578
Number of extensions: 155769
Number of successful extensions: 602
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 138
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)