Query 032515
Match_columns 139
No_of_seqs 148 out of 1135
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 9.2E-50 2E-54 277.6 16.6 137 1-137 1-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 4.9E-50 1.1E-54 273.6 14.5 133 6-138 2-148 (148)
3 PTZ00390 ubiquitin-conjugating 100.0 1.5E-46 3.2E-51 263.6 17.4 134 6-139 3-150 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.2E-45 2.7E-50 257.8 17.0 131 7-137 3-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 6.9E-46 1.5E-50 247.2 13.8 134 1-135 1-148 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 6.8E-42 1.5E-46 234.2 15.3 135 1-135 1-163 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 3.3E-41 7.2E-46 227.8 15.3 137 1-138 1-158 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 8.2E-41 1.8E-45 235.1 14.2 136 1-138 1-154 (200)
9 KOG0426 Ubiquitin-protein liga 100.0 2.4E-40 5.3E-45 220.9 13.7 134 1-135 1-162 (165)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 3.8E-39 8.3E-44 223.8 15.0 125 8-132 2-141 (141)
11 PF00179 UQ_con: Ubiquitin-con 100.0 4.2E-39 9.1E-44 223.3 13.5 124 9-132 1-140 (140)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.8E-38 4E-43 221.3 16.3 129 8-136 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 4E-38 8.7E-43 212.9 11.3 131 3-134 27-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 1.1E-35 2.3E-40 200.1 13.1 133 5-138 2-150 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1.4E-33 3.1E-38 195.6 12.4 132 5-139 3-150 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 3.4E-33 7.4E-38 194.0 11.5 131 4-137 27-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1.2E-33 2.7E-38 196.5 7.2 134 5-138 10-157 (223)
18 KOG0894 Ubiquitin-protein liga 100.0 4.9E-30 1.1E-34 184.1 13.1 103 1-103 1-118 (244)
19 KOG0427 Ubiquitin conjugating 99.9 2.3E-27 5E-32 158.4 9.8 98 4-102 14-126 (161)
20 KOG0428 Non-canonical ubiquiti 99.9 1E-23 2.2E-28 154.4 8.4 98 4-102 10-122 (314)
21 KOG0429 Ubiquitin-conjugating 99.9 1E-22 2.2E-27 146.9 12.6 126 8-134 22-167 (258)
22 KOG0895 Ubiquitin-conjugating 99.7 2E-17 4.4E-22 140.7 5.8 102 7-108 853-979 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 8.8E-15 1.9E-19 124.9 9.4 100 4-103 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.1 4.7E-10 1E-14 75.8 7.2 101 1-101 1-122 (138)
25 KOG0897 Predicted ubiquitin-co 98.7 6.8E-08 1.5E-12 63.6 5.7 76 55-131 14-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 2.3E-06 5.1E-11 58.7 6.1 53 50-102 34-106 (133)
27 PF05743 UEV: UEV domain; Int 97.8 2.5E-05 5.4E-10 52.9 3.3 65 33-102 31-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.6 2.5E-05 5.5E-10 53.6 1.7 84 5-93 24-135 (161)
29 KOG2391 Vacuolar sorting prote 97.1 0.0034 7.4E-08 49.1 8.0 68 33-105 51-140 (365)
30 PF05773 RWD: RWD domain; Int 97.0 0.0057 1.2E-07 39.8 7.6 62 8-70 4-67 (113)
31 KOG3357 Uncharacterized conser 96.8 0.0023 5E-08 43.5 4.2 73 6-84 28-126 (167)
32 PF14462 Prok-E2_E: Prokaryoti 96.6 0.026 5.7E-07 38.2 8.1 78 23-101 12-120 (122)
33 smart00591 RWD domain in RING 96.5 0.046 9.9E-07 35.2 9.1 62 36-102 24-86 (107)
34 PF09765 WD-3: WD-repeat regio 90.8 0.46 1E-05 36.9 4.4 85 7-101 101-187 (291)
35 KOG0309 Conserved WD40 repeat- 88.8 1.6 3.5E-05 38.1 6.5 61 8-70 423-485 (1081)
36 KOG4018 Uncharacterized conser 88.2 1.9 4E-05 31.9 5.7 59 9-70 6-67 (215)
37 PF14457 Prok-E2_A: Prokaryoti 81.7 2.9 6.2E-05 29.7 4.1 47 56-102 57-126 (162)
38 KOG4274 Positive cofactor 2 (P 69.3 18 0.00039 30.9 6.1 83 8-107 622-708 (742)
39 COG3140 Uncharacterized protei 64.6 11 0.00023 21.9 2.8 27 1-27 28-54 (60)
40 smart00340 HALZ homeobox assoc 62.3 7.6 0.00016 21.2 1.9 15 7-21 21-35 (44)
41 PF12018 DUF3508: Domain of un 55.0 17 0.00038 27.9 3.5 29 108-136 238-266 (281)
42 COG0544 Tig FKBP-type peptidyl 53.8 30 0.00065 28.5 4.9 15 53-67 210-224 (441)
43 KOG2851 Eukaryotic-type DNA pr 53.1 31 0.00067 27.8 4.6 31 69-99 334-369 (412)
44 KOG0177 20S proteasome, regula 47.6 20 0.00044 26.1 2.6 29 71-99 135-163 (200)
45 PF03847 TFIID_20kDa: Transcri 46.4 64 0.0014 19.3 4.8 42 95-136 4-45 (68)
46 cd07981 TAF12 TATA Binding Pro 45.6 66 0.0014 19.3 4.8 43 95-137 6-48 (72)
47 KOG3285 Spindle assembly check 42.9 50 0.0011 24.0 4.0 55 5-70 119-173 (203)
48 PF04881 Adeno_GP19K: Adenovir 41.8 29 0.00062 23.8 2.5 31 30-60 43-74 (139)
49 PF13950 Epimerase_Csub: UDP-g 40.8 33 0.00072 20.1 2.5 19 81-99 36-54 (62)
50 PRK05414 urocanate hydratase; 38.7 35 0.00076 28.8 3.0 27 110-136 281-307 (556)
51 TIGR01228 hutU urocanate hydra 38.4 36 0.00078 28.6 3.0 27 110-136 272-298 (545)
52 PF09606 Med15: ARC105 or Med1 37.2 11 0.00024 33.3 0.0 18 53-70 715-732 (799)
53 smart00803 TAF TATA box bindin 37.2 47 0.001 19.7 2.7 30 108-137 19-48 (65)
54 PF01175 Urocanase: Urocanase; 37.2 59 0.0013 27.5 4.1 27 110-136 271-297 (546)
55 PF12652 CotJB: CotJB protein; 35.8 86 0.0019 19.4 3.8 31 106-136 24-54 (78)
56 cd01145 TroA_c Periplasmic bin 35.4 54 0.0012 23.6 3.4 46 83-134 111-156 (203)
57 PF14798 Ca_hom_mod: Calcium h 34.7 35 0.00075 26.0 2.3 30 108-137 208-238 (251)
58 cd01019 ZnuA Zinc binding prot 34.4 80 0.0017 24.1 4.3 47 83-135 124-170 (286)
59 PF11619 P53_C: Transcription 33.7 1.1E+02 0.0024 18.4 5.5 24 33-63 3-26 (71)
60 PF14135 DUF4302: Domain of un 33.3 1.8E+02 0.0039 21.6 5.9 48 4-63 8-56 (235)
61 PRK05114 hypothetical protein; 30.5 58 0.0013 19.0 2.2 21 1-21 28-48 (59)
62 PF09280 XPC-binding: XPC-bind 30.3 73 0.0016 18.5 2.7 21 109-129 34-54 (59)
63 PF11333 DUF3135: Protein of u 29.4 1E+02 0.0022 19.3 3.4 25 111-135 7-31 (83)
64 PF12065 DUF3545: Protein of u 29.4 43 0.00094 19.7 1.6 13 7-19 36-48 (59)
65 COG3623 SgaU Putative L-xylulo 28.7 2.7E+02 0.0059 21.4 6.4 55 10-67 164-218 (287)
66 PF04552 Sigma54_DBD: Sigma-54 28.5 63 0.0014 22.8 2.7 68 50-135 78-146 (160)
67 PF15597 Imm36: Immunity prote 28.4 1.5E+02 0.0032 19.4 4.1 29 26-60 23-51 (101)
68 cd00173 SH2 Src homology 2 dom 28.4 1.4E+02 0.0031 18.0 5.0 36 21-62 19-55 (94)
69 PF06113 BRE: Brain and reprod 28.4 1.6E+02 0.0034 23.5 5.0 31 34-70 53-83 (333)
70 KOG1692 Putative cargo transpo 28.1 50 0.0011 24.2 2.1 47 24-70 44-104 (201)
71 smart00761 HDAC_interact Histo 27.5 30 0.00066 22.6 0.8 26 60-85 12-38 (102)
72 cd01020 TroA_b Metal binding p 26.7 1.2E+02 0.0025 22.9 4.0 46 83-134 98-143 (264)
73 TIGR02422 protocat_beta protoc 25.8 62 0.0013 24.1 2.3 18 34-51 203-220 (220)
74 KOG4690 Uncharacterized conser 25.5 1.1E+02 0.0025 21.2 3.3 24 114-137 96-119 (165)
75 COG0525 ValS Valyl-tRNA synthe 25.3 3.3E+02 0.0072 24.8 6.9 72 56-137 35-122 (877)
76 cd01018 ZntC Metal binding pro 25.0 1E+02 0.0023 23.1 3.5 45 83-133 115-159 (266)
77 smart00545 JmjN Small domain f 24.8 85 0.0018 17.0 2.2 19 119-137 13-31 (42)
78 cd03457 intradiol_dioxygenase_ 23.4 92 0.002 22.6 2.8 21 50-70 85-105 (188)
79 KOG4064 Cysteine dioxygenase C 22.9 2.5E+02 0.0055 19.9 4.7 50 82-135 6-60 (196)
80 cd00421 intradiol_dioxygenase 22.7 99 0.0021 21.2 2.7 21 50-70 64-85 (146)
81 KOG0744 AAA+-type ATPase [Post 22.6 35 0.00075 27.5 0.5 69 32-105 171-250 (423)
82 PRK09545 znuA high-affinity zi 22.3 1.8E+02 0.0039 22.6 4.4 45 83-133 148-192 (311)
83 PF04314 DUF461: Protein of un 21.8 1.3E+02 0.0029 19.4 3.1 27 36-62 77-103 (110)
84 KOG3737 Predicted polypeptide 21.7 95 0.0021 25.7 2.8 31 63-94 149-180 (603)
85 COG5437 Predicted secreted pro 21.3 1.5E+02 0.0032 20.3 3.2 40 31-78 85-124 (138)
86 PF03037 KMP11: Kinetoplastid 21.2 1E+02 0.0022 18.9 2.2 27 106-132 37-70 (90)
87 PF11886 DUF3406: Domain of un 21.0 1.9E+02 0.0041 22.4 4.1 30 39-70 169-198 (273)
88 cd01137 PsaA Metal binding pro 20.1 1.6E+02 0.0035 22.5 3.7 46 83-134 120-165 (287)
89 cd01016 TroA Metal binding pro 20.0 1.6E+02 0.0034 22.4 3.6 45 83-133 104-148 (276)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-50 Score=277.57 Aligned_cols=137 Identities=45% Similarity=0.919 Sum_probs=133.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCC-CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
|++..+.+||++|++.|++++++++++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 66666999999999999999999999999887 99999999999999999999999999999999999999
Q ss_pred -----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 -----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 -----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+|||++|++.|+|.+++++||.+|+++|.+||+++|+|.|||.+|++|+++|.++||+++++||.
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-50 Score=273.62 Aligned_cols=133 Identities=61% Similarity=1.017 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------C
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------L 71 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~ 71 (139)
+.+||.+|+++|.+++++|+++.++++|+++|+++|.||.+|||+||+|++.|.||++||++||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 45799999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred CceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 72 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 72 G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
|+||||+|++.|+|++|+.+||.+|++||.+||+++|++.++|.+|+.|+++|+++||+||+|||+.
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.5e-46 Score=263.63 Aligned_cols=134 Identities=63% Similarity=1.106 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------C
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------L 71 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~ 71 (139)
++|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+ +
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred CceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCCC
Q 032515 72 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 139 (139)
Q Consensus 72 G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~~ 139 (139)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|++.|.++||+|+++||.++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~ 150 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHN 150 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999853
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-45 Score=257.83 Aligned_cols=131 Identities=50% Similarity=0.940 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------CC
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------LG 72 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~G 72 (139)
.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+ +|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 73 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 73 ~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999983
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-46 Score=247.19 Aligned_cols=134 Identities=41% Similarity=0.779 Sum_probs=130.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
|+ ..|.|||++++++|+++++.||+..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.
T Consensus 1 Ms-tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MS-TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CC-chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 66 7888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 032515 71 ----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 135 (139)
Q Consensus 71 ----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~ 135 (139)
+|.+|||+|...|+|++++..||.+||+||.+||+++|+|.+||++|.+|+.+|++++++.+.+.
T Consensus 80 Nvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 80 NVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988763
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-42 Score=234.16 Aligned_cols=135 Identities=32% Similarity=0.678 Sum_probs=128.2
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCC-CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
|++..+..-|+++|+.|++++.+|+.+...+ .|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 7778888999999999999999999998655 599999999999999999999999999999999999999
Q ss_pred -----CCceecccCC-------------CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 032515 71 -----LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 132 (139)
Q Consensus 71 -----~G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 132 (139)
+|+||++||. +.|+|.+|+++||++|.+||.+||.++|+|.|||+.|++++++|.++++++|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 9999999994 5699999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 032515 133 RLY 135 (139)
Q Consensus 133 ~k~ 135 (139)
++-
T Consensus 161 r~s 163 (171)
T KOG0425|consen 161 RRS 163 (171)
T ss_pred HHH
Confidence 863
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-41 Score=227.78 Aligned_cols=137 Identities=31% Similarity=0.595 Sum_probs=129.9
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCC-----CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-----
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~----- 70 (139)
|| +.+..||+.|.+.+.++.+.|+++.|.. .|++.|++.|.|+.+|+|+||.|.+.+.||++||.+||+
T Consensus 1 ~s-~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 1 MS-GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred Cc-chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 55 6678999999999999999999999754 489999999999999999999999999999999999999
Q ss_pred ---------CCceecccCCCC--CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ---------LGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ---------~G~vcl~~l~~~--W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++ |+|++||.+||.+|+.||.+||+.+|+|.||..+|.+|+.+|.++||.++++||..
T Consensus 80 pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 80 PLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 999999999765 99999999999999999999999999999999999999999999999999999863
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-41 Score=235.07 Aligned_cols=136 Identities=44% Similarity=0.824 Sum_probs=131.8
Q ss_pred CCCCchHHHHHHHHHHHhcCC---CCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------
Q 032515 1 MANSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~---~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------- 70 (139)
|+. +.+||++|.+++.+++ -.||.+...++|+.+..+.|.||++|||+||+|.++|++|++|||+||+
T Consensus 1 m~~--~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI 78 (200)
T KOG0418|consen 1 MSN--AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI 78 (200)
T ss_pred Ccc--HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence 664 8899999999999988 6799999999999999999999999999999999999999999999999
Q ss_pred --------CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --------~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.||||+|++.|.+++|++.+|.+|+++|..|++.+|.+.+.|++|.+|++.|.+.||.|+..||++
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-40 Score=220.87 Aligned_cols=134 Identities=35% Similarity=0.696 Sum_probs=127.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeC-CCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
|+ ..|+|||++|+++|..++++||.+.|. ++|.+.|.+.|.||++|+|+||.|..++.||.+||.+||+
T Consensus 1 m~-~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MA-GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred Cc-hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 55 789999999999999999999999874 5799999999999999999999999999999999999999
Q ss_pred -----CCceecccCC-------------CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 032515 71 -----LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 132 (139)
Q Consensus 71 -----~G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 132 (139)
+|+||+++|. +.|+|.++++.||.++.++|.+||.++.+|.+|+.++++||++|.+.|+..+
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999994 5799999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 032515 133 RLY 135 (139)
Q Consensus 133 ~k~ 135 (139)
+|-
T Consensus 160 rKt 162 (165)
T KOG0426|consen 160 RKT 162 (165)
T ss_pred HHh
Confidence 875
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.8e-39 Score=223.76 Aligned_cols=125 Identities=51% Similarity=0.943 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------CCc
Q 032515 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------LGR 73 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~G~ 73 (139)
|||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+++|.||++||++||+ +|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred eecccCCCC-CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 032515 74 ICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 132 (139)
Q Consensus 74 vcl~~l~~~-W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 132 (139)
||++++..+ |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|+++||+|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999975
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.2e-39 Score=223.27 Aligned_cols=124 Identities=51% Similarity=0.975 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCCCCCeEEeeCCC-CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------CCc
Q 032515 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------LGR 73 (139)
Q Consensus 9 Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~G~ 73 (139)
||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+ +|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999998886 99999999999999999999999999999999999999 899
Q ss_pred eecccCCC-CCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 032515 74 ICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 132 (139)
Q Consensus 74 vcl~~l~~-~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 132 (139)
||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999975 599999999999999999999999999999999999999999999999984
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.8e-38 Score=221.27 Aligned_cols=129 Identities=53% Similarity=0.977 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCCC-CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------CC
Q 032515 8 RRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------LG 72 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~G 72 (139)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|+|+||+|+|.|.||++||++||+ +|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988775 99999999999999999999999999999999999999 89
Q ss_pred ceecccCC-CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 73 RICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 73 ~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+||++|.+|++.|+++|+++++||+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-38 Score=212.94 Aligned_cols=131 Identities=40% Similarity=0.691 Sum_probs=125.0
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+....|||++|+..|.....+||++.|+++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 34567999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
.|.||||||++.|+..+++++||.+|++||-+||.++|+|..||+++. |.++|++.+.+.-++
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999998 999999998876544
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=200.12 Aligned_cols=133 Identities=32% Similarity=0.649 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHHhcCCCCCeE-EeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 5 NLPRRIIKETQRLLSEPAPGIS-ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~-~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
.+.+||++|+.+|++++...+. +..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 3679999999999998877553 4567889999999999 899999999999999999999999999
Q ss_pred -CCceecccC-CCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 -LGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 -~G~vcl~~l-~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
.|+||+.++ .++|.|+.++.+||.+|..++++|++++|++.|+|..|.+|+..|.++|.++|+||+..
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 899999999 68999999999999999999999999999999999999999999999999999999864
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=195.61 Aligned_cols=132 Identities=35% Similarity=0.672 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------
Q 032515 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------------- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------------- 70 (139)
...||+..|+..|.. .+..|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.
T Consensus 3 ~~~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred CcccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 345999999999975 567788788889999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCCC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 139 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~~ 139 (139)
+|.|||+.+++.|+|.+.+..|+.. |-.||..||+.+|+|.|||.+|.++++.|.++++++++|||.++
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999975 56789999999999999999999999999999999999999874
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=194.04 Aligned_cols=131 Identities=31% Similarity=0.573 Sum_probs=114.4
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEe--eCCCCcc--EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISAS--PSEDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~--~~~~~~~--~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
++++-||++|+-++. .+++++.. .+.+++. .++++|. |.++.|.||.|+|.+.+|+.||+.||+
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 456677777777764 34555433 2234444 5999999 999999999999999999999999999
Q ss_pred -----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 -----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 -----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|.|||+||+++|+|+.++.+|+.+|+.||.+|+++||+|.+||.++++|++.|+.+||.....++-
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998877654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=196.53 Aligned_cols=134 Identities=35% Similarity=0.650 Sum_probs=130.5
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------
Q 032515 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------------- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------------- 70 (139)
...|.+.+|++.|...|+.||.|.+.++|.....+.|.||.||||++|.|+..+.+..+||.+||+
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+||.+.|..+|+|...+++||..|.+||..||+++++|.+|.+++.+++++|.++||.++..+|++
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-30 Score=184.10 Aligned_cols=103 Identities=32% Similarity=0.683 Sum_probs=97.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
|++..+.|||+|||+.|+++|.++|.+.|.++|+.+||.+|.||++|||+||.|+.+|.||++||++||.
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCceecccC---CCCCCccccHHHHHHHHHHHhcCC
Q 032515 71 --LGRICLDIL---KDKWSPALQIRTVLLSIQALLSAP 103 (139)
Q Consensus 71 --~G~vcl~~l---~~~W~p~~~~~~il~~i~~ll~~p 103 (139)
+-++||++- ++.|+|.+++.+||.+|.+++.+-
T Consensus 81 ktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 81 KTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred ecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 456999766 689999999999999999988863
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-27 Score=158.44 Aligned_cols=98 Identities=35% Similarity=0.676 Sum_probs=94.0
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
..|.+||+||+.+|+.+++.|+... ..+|+.+|.+.+.|.+||.|+|.+|.+.+.||+.||+..|.
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHi 92 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHI 92 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCce
Confidence 4578999999999999999999998 67899999999999999999999999999999999999988
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~ 102 (139)
+|.|||++|.++|+|++++.+|-.+|.+||++
T Consensus 93 YSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 93 YSNGHICLDILYDSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred ecCCeEEEEeecccCCcchhhHHHHHHHHHHHcc
Confidence 99999999999999999999999999999986
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-23 Score=154.35 Aligned_cols=98 Identities=34% Similarity=0.716 Sum_probs=90.7
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------C
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------L 71 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------~ 71 (139)
+++.|||+||.++|+ +|...+.+.+.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||. +
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~n 88 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVN 88 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeC
Confidence 678999999999998 888888899999999999999999999999999999999999999999999 4
Q ss_pred CceecccC---CCCCCccccHHHHHHHHHHHhcC
Q 032515 72 GRICLDIL---KDKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 72 G~vcl~~l---~~~W~p~~~~~~il~~i~~ll~~ 102 (139)
.+|||++- ++.|.|++++++.|.+|..++-.
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 56999887 58999999999999999887753
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-22 Score=146.94 Aligned_cols=126 Identities=22% Similarity=0.371 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCC--CCC---------------
Q 032515 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA--APK--------------- 70 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~--pP~--------------- 70 (139)
-.|..|+..+.+.+.+||+|.|+..|-+.|.++|+ -..|+|.||+|+|+|.+|++||.. -|+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 46788999999999999999999999999999999 577899999999999999999942 344
Q ss_pred CCceecccCCCCCCccc-cHHHHHHHHHHHhcCCCCCCc--ccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 71 LGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 71 ~G~vcl~~l~~~W~p~~-~~~~il~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
++++|++.....|+-.- ++++||..|+.+|.+|+.+.+ .|++|+.+|++++++|.++|+++++.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 89999987766698865 899999999999999998776 59999999999999999999999874
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2e-17 Score=140.72 Aligned_cols=102 Identities=30% Similarity=0.639 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------------
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------------- 70 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------------- 70 (139)
.+..+.|.+-|..+-+.||+|...++.+....+.|.||.+|||++|.|.|.+.||.+||.+||.
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 3455566777777889999999999998899999999999999999999999999999999998
Q ss_pred CCceecccCC-------CCCCccccHHHHHHHHHHHhcC--CCCCCc
Q 032515 71 LGRICLDILK-------DKWSPALQIRTVLLSIQALLSA--PNPDDP 108 (139)
Q Consensus 71 ~G~vcl~~l~-------~~W~p~~~~~~il~~i~~ll~~--p~~~~p 108 (139)
+|+|||++|+ +.|+|+.++.+||.+||.|+.+ |.++.+
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 8999999996 6799999999999999998764 555443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.8e-15 Score=124.90 Aligned_cols=100 Identities=33% Similarity=0.710 Sum_probs=93.2
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
....+|+++|++.+.++.++|+.+.+.+.......+.|.||.+|||++|+|.|+|.||..||..||.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 3456999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCceecccCC-------CCCCcc-ccHHHHHHHHHHHhcCC
Q 032515 71 ----LGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 103 (139)
Q Consensus 71 ----~G~vcl~~l~-------~~W~p~-~~~~~il~~i~~ll~~p 103 (139)
+|+||+++|. +.|+|. .++.++|.+|+.++.+.
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 8999999983 679998 79999999999998764
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.7e-10 Score=75.78 Aligned_cols=101 Identities=20% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCe-EEeeC-CCC--ccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGI-SASPS-EDN--MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------ 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~-~~~~~-~~~--~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------ 70 (139)
|+..+..-||.+|+..=++-.-+|. +.... .+| +..|..+|.||+.|+|++.+|.++|..-++||..||.
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 4556667789888887766544443 32222 233 5799999999999999999999999999999999999
Q ss_pred ---------CCceecccC--CCCCCccccHHHHHHHHHHHhc
Q 032515 71 ---------LGRICLDIL--KDKWSPALQIRTVLLSIQALLS 101 (139)
Q Consensus 71 ---------~G~vcl~~l--~~~W~p~~~~~~il~~i~~ll~ 101 (139)
+|.|.-.-+ -.+|.-.++++.||..++.++.
T Consensus 81 inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 455543222 3789999999999999986443
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.8e-08 Score=63.64 Aligned_cols=76 Identities=21% Similarity=0.408 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCCCCCC---------------CCceecccC-CCCCCccccHHHHHHHHHHHhcCCCC--CCcccHHHHHH
Q 032515 55 KLELFLPEEYPMAAPK---------------LGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNP--DDPLSENIAKH 116 (139)
Q Consensus 55 ~~~i~fp~~YP~~pP~---------------~G~vcl~~l-~~~W~p~~~~~~il~~i~~ll~~p~~--~~p~n~~aa~~ 116 (139)
-+.+.|+++||+.||. +|.||+.+| .++|+.+++++.++++|...+-.... ..+++.+.. +
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-~ 92 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-L 92 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-H
Confidence 4678899999999998 889999999 68999999999999999998887543 455544433 4
Q ss_pred HHh--CHHHHHHHHHHH
Q 032515 117 WKT--NEAEAVETAKEW 131 (139)
Q Consensus 117 ~~~--~~~~f~~~a~~~ 131 (139)
|.. --+.|+..++-+
T Consensus 93 ~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 93 YSHSQAQQSFKSLVQIH 109 (122)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 443 344566555544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.29 E-value=2.3e-06 Score=58.72 Aligned_cols=53 Identities=34% Similarity=0.757 Sum_probs=49.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCC-----------------CCceec---ccCCCCCCccccHHHHHHHHHHHhcC
Q 032515 50 EGGVFKLELFLPEEYPMAAPK-----------------LGRICL---DILKDKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~-----------------~G~vcl---~~l~~~W~p~~~~~~il~~i~~ll~~ 102 (139)
.|+.+.+.|.||++||..||. +|.+|+ ....+.|.|..++.++|..+..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999998 899999 77789999999999999999999884
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.78 E-value=2.5e-05 Score=52.85 Aligned_cols=65 Identities=28% Similarity=0.595 Sum_probs=47.0
Q ss_pred CccEEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCC-------------------CCceecccCCCCCCc-cccHH
Q 032515 33 NMRYFNVMILGPTQSPYEGGVFK--LELFLPEEYPMAAPK-------------------LGRICLDILKDKWSP-ALQIR 90 (139)
Q Consensus 33 ~~~~w~~~i~Gp~~t~y~gg~f~--~~i~fp~~YP~~pP~-------------------~G~vcl~~l~~~W~p-~~~~~ 90 (139)
.+....++|.- .|+|..|. +.|.+|.+||.+||. +|+|.+..| ++|++ ..++.
T Consensus 31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HH
T ss_pred eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHH
Confidence 45666677652 48888885 666789999999998 888888888 56877 77899
Q ss_pred HHHHHHHHHhcC
Q 032515 91 TVLLSIQALLSA 102 (139)
Q Consensus 91 ~il~~i~~ll~~ 102 (139)
+++..+...|.+
T Consensus 106 ~lv~~l~~~F~~ 117 (121)
T PF05743_consen 106 DLVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHHHHHhH
Confidence 999998888764
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.64 E-value=2.5e-05 Score=53.59 Aligned_cols=84 Identities=24% Similarity=0.278 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHhc-------CCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCc--EEEEEEEcCCCCCCCCCC-----
Q 032515 5 NLPRRIIKETQRLLS-------EPAPGISASPSEDNMRYFNVMILGPTQSPYEGG--VFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~-------~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg--~f~~~i~fp~~YP~~pP~----- 70 (139)
....||..|++.|-+ +....+.+.. +.+=..|.+..-= .|+-- -|.+++.+|..||..||.
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPe 98 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPE 98 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GG
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccc
Confidence 346899999999754 2344566653 2233455554320 12222 455666779999999998
Q ss_pred ----------CCceecccCC-CCC---CccccHHHHH
Q 032515 71 ----------LGRICLDILK-DKW---SPALQIRTVL 93 (139)
Q Consensus 71 ----------~G~vcl~~l~-~~W---~p~~~~~~il 93 (139)
+|+|||+... .-| .|...+.+.|
T Consensus 99 LdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 99 LDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred cCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 8999998773 334 4555666555
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0034 Score=49.05 Aligned_cols=68 Identities=24% Similarity=0.533 Sum_probs=54.2
Q ss_pred CccEEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCC-------------------CCceecccCCCCCCc-cccHH
Q 032515 33 NMRYFNVMILGPTQSPYEGGVFKL--ELFLPEEYPMAAPK-------------------LGRICLDILKDKWSP-ALQIR 90 (139)
Q Consensus 33 ~~~~w~~~i~Gp~~t~y~gg~f~~--~i~fp~~YP~~pP~-------------------~G~vcl~~l~~~W~p-~~~~~ 90 (139)
+++...++|. .+|.|.+|.+ .|-+.+.||+.||. +|.|.|.+|.+ |.+ +.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~-W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN-WDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc-CCCccchHH
Confidence 5667777775 4688888875 55579999999998 89999999955 765 66899
Q ss_pred HHHHHHHHHhcCCCC
Q 032515 91 TVLLSIQALLSAPNP 105 (139)
Q Consensus 91 ~il~~i~~ll~~p~~ 105 (139)
.++..+...|.++.+
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999999887443
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.02 E-value=0.0057 Score=39.85 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCC
Q 032515 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~G--p~~t~y~gg~f~~~i~fp~~YP~~pP~ 70 (139)
.+...|+..|+.-=+... ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~ 67 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPK 67 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--E
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCE
Confidence 466788888875333333 22334455566777732 234445567899999999999999997
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0023 Score=43.46 Aligned_cols=73 Identities=26% Similarity=0.430 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCC-----
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGG----------VFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~----- 70 (139)
...||..|++.|... +.-..++-..|.-.=.-+.||-|-|. -|.+++.+|..||...|.
T Consensus 28 wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpe 101 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPE 101 (167)
T ss_pred HHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccc
Confidence 468999999988531 11111111122222233566666653 355666679999999987
Q ss_pred ----------CCceecccC-CCCCC
Q 032515 71 ----------LGRICLDIL-KDKWS 84 (139)
Q Consensus 71 ----------~G~vcl~~l-~~~W~ 84 (139)
+|+|||.-. ..-|.
T Consensus 102 ldgktakmyrggkiclt~hfkplwa 126 (167)
T KOG3357|consen 102 LDGKTAKMYRGGKICLTDHFKPLWA 126 (167)
T ss_pred cCchhhhhhcCceEeeccccchhhh
Confidence 899999544 44464
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.57 E-value=0.026 Score=38.17 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=55.1
Q ss_pred CCeEEeeCCCCccEEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCC-----------C-Cce--ecccC-------
Q 032515 23 PGISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPK-----------L-GRI--CLDIL------- 79 (139)
Q Consensus 23 ~g~~~~~~~~~~~~w~~~i~G--p~~t~y~gg~f~~~i~fp~~YP~~pP~-----------~-G~v--cl~~l------- 79 (139)
.|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|. + |.| |-+..
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 46666654444455655 555 567779999999999999999998887 3 445 43322
Q ss_pred -------CCCCCccc-cHHHHHHHHHHHhc
Q 032515 80 -------KDKWSPAL-QIRTVLLSIQALLS 101 (139)
Q Consensus 80 -------~~~W~p~~-~~~~il~~i~~ll~ 101 (139)
+..|+|.. +|.+.|..|...|.
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 24599977 78888888877663
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.55 E-value=0.046 Score=35.22 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=36.3
Q ss_pred EEEEEEeCCCC-CCCCCcEEEEEEEcCCCCCCCCCCCCceecccCCCCCCccccHHHHHHHHHHHhcC
Q 032515 36 YFNVMILGPTQ-SPYEGGVFKLELFLPEEYPMAAPKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 36 ~w~~~i~Gp~~-t~y~gg~f~~~i~fp~~YP~~pP~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~ 102 (139)
.+.+.+....+ +.-..-.+.+.+.||++||..+|. |.+ ....|-+......+...+.....+
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~---i~~--~~~~~l~~~~~~~l~~~l~~~~~e 86 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPP---ISL--LNSEGLSDEQLAELLKKLEEIAEE 86 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCC---eEE--ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 55555542211 122345689999999999999886 111 112255555566666666666654
No 34
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=90.76 E-value=0.46 Score=36.85 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-CCceecccCCCCCCc
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-LGRICLDILKDKWSP 85 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-~G~vcl~~l~~~W~p 85 (139)
-.+|.+|+..+..+.. +.+. .++++...++.+.. +.....++|.+|.+||.++|. +=.+|.. +...|.+
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~~-~~~~w~~ 170 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPIP-FSLSWSP 170 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--HHHHHHC
T ss_pred HHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCcc-hhhhhcc
Confidence 3577888888865333 3332 35677888888872 225778999999999999996 2222221 1246988
Q ss_pred -cccHHHHHHHHHHHhc
Q 032515 86 -ALQIRTVLLSIQALLS 101 (139)
Q Consensus 86 -~~~~~~il~~i~~ll~ 101 (139)
..++.+|+...+..+.
T Consensus 171 ~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 171 SQSSLKDVVQQFQEALE 187 (291)
T ss_dssp HT-SHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 6688888877766654
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.78 E-value=1.6 Score=38.12 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEE-EEEEEcCCCCCCCC-CC
Q 032515 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVF-KLELFLPEEYPMAA-PK 70 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f-~~~i~fp~~YP~~p-P~ 70 (139)
.-|.+|+..+- .+.+.+.++-.+-.-....+++-||-.-. +|-+| ++.|.||.+||.+. |+
T Consensus 423 QnLgeE~S~Ig-~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~ 485 (1081)
T KOG0309|consen 423 QNLGEEFSLIG-VKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPS 485 (1081)
T ss_pred hhHHhHHhHhh-ccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCc
Confidence 45666776663 33445555533434466777888765443 44444 78999999999864 55
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.22 E-value=1.9 Score=31.95 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCCCe-EEeeCCCCccEEEEEEeCCCCCCCCC--cEEEEEEEcCCCCCCCCCC
Q 032515 9 RIIKETQRLLSEPAPGI-SASPSEDNMRYFNVMILGPTQSPYEG--GVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 9 Rl~~E~~~l~~~~~~g~-~~~~~~~~~~~w~~~i~Gp~~t~y~g--g~f~~~i~fp~~YP~~pP~ 70 (139)
-...|+..|..--+.-+ .+. +.+...+.++|. ...+-++. |.+.+.+.++++||..+|.
T Consensus 6 eQe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pl 67 (215)
T KOG4018|consen 6 EQEEELEALESIYPDEFKHIN--SEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPL 67 (215)
T ss_pred HHHHHHHHHHHhccchhhhhh--ccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcc
Confidence 34567777765333323 222 233444677776 33332222 2789999999999999997
No 37
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=81.72 E-value=2.9 Score=29.68 Aligned_cols=47 Identities=21% Similarity=0.395 Sum_probs=37.8
Q ss_pred EEEEcCCCCCCCCC-C---------------------CCceecccC-CCCCCccccHHHHHHHHHHHhcC
Q 032515 56 LELFLPEEYPMAAP-K---------------------LGRICLDIL-KDKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 56 ~~i~fp~~YP~~pP-~---------------------~G~vcl~~l-~~~W~p~~~~~~il~~i~~ll~~ 102 (139)
+.|.|+.+||..+| . ...+|+--- -..|.+..++..+|..|...|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56889999999999 3 256898555 35699999999999999888864
No 38
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=69.35 E-value=18 Score=30.88 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCC----CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCceecccCCCCC
Q 032515 8 RRIIKETQRLLSEPAPGISASPSE----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICLDILKDKW 83 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~----~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~~G~vcl~~l~~~W 83 (139)
.-|++|+..|. .-+.|.++. +|-....|.|. +--+- -++|.+|.+|| -|.+|.|-- --+
T Consensus 622 ~vlqgElarLD----~kF~v~ld~~~~~nN~I~liCkld---dk~lP----Pl~lsVP~~YP-----aq~~~vdr~-~~y 684 (742)
T KOG4274|consen 622 EVLQGELARLD----AKFEVDLDHQRHDNNHIILICKLD---DKQLP----PLRLSVPTTYP-----AQNVTVDRA-VIY 684 (742)
T ss_pred HHHHHHHHhhc----cceeecCCcccccCCeeEEEEEec---CCCCC----Ceeeecccccc-----ccchhhhhH-HHh
Confidence 45778888885 345555432 34333333333 32222 48999999999 567887532 114
Q ss_pred CccccHHHHHHHHHHHhcCCCCCC
Q 032515 84 SPALQIRTVLLSIQALLSAPNPDD 107 (139)
Q Consensus 84 ~p~~~~~~il~~i~~ll~~p~~~~ 107 (139)
..+.-+.+|=.++++-|+.|...+
T Consensus 685 ~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 685 LAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred hhcHHHHHHHHHHHHHHccCCcch
Confidence 455556777778887777766654
No 39
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.64 E-value=11 Score=21.89 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEE
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISA 27 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~ 27 (139)
|||+.|..-+.+|+++.+++.+.+...
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~~~ 54 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIVAR 54 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccccc
Confidence 889999999999999999877665543
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.33 E-value=7.6 Score=21.21 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCC
Q 032515 7 PRRIIKETQRLLSEP 21 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~ 21 (139)
.+||++|+++|....
T Consensus 21 NrRL~ke~~eLralk 35 (44)
T smart00340 21 NRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHhcc
Confidence 489999999997643
No 41
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=54.97 E-value=17 Score=27.90 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=26.0
Q ss_pred cccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 108 PLSENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 108 p~n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.+.+|+..|..+|+.|...+.+.+++.+
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 36899999999999999999999998764
No 42
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=53.84 E-value=30 Score=28.52 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=11.6
Q ss_pred EEEEEEEcCCCCCCC
Q 032515 53 VFKLELFLPEEYPMA 67 (139)
Q Consensus 53 ~f~~~i~fp~~YP~~ 67 (139)
...+.++||.+|+..
T Consensus 210 ~k~i~vtFP~dy~a~ 224 (441)
T COG0544 210 EKDIKVTFPEDYHAE 224 (441)
T ss_pred eeEEEEEcccccchh
Confidence 344889999999853
No 43
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=53.08 E-value=31 Score=27.79 Aligned_cols=31 Identities=35% Similarity=0.719 Sum_probs=25.2
Q ss_pred CCCCceecccCC---CCCCccc--cHHHHHHHHHHH
Q 032515 69 PKLGRICLDILK---DKWSPAL--QIRTVLLSIQAL 99 (139)
Q Consensus 69 P~~G~vcl~~l~---~~W~p~~--~~~~il~~i~~l 99 (139)
|++|+||.++=- +...|.. |+.+++..|.++
T Consensus 334 P~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 334 PKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 449999997662 6688866 899999999888
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.63 E-value=20 Score=26.12 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCceecccCCCCCCccccHHHHHHHHHHH
Q 032515 71 LGRICLDILKDKWSPALQIRTVLLSIQAL 99 (139)
Q Consensus 71 ~G~vcl~~l~~~W~p~~~~~~il~~i~~l 99 (139)
.+..|++++...|+|.+|++.-+.-++-.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKC 163 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKC 163 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHH
Confidence 66799999999999999987666554433
No 45
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=46.43 E-value=64 Score=19.35 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 95 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 95 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
.|+.|+..-++...+.+++..++.+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888999999999999999999988888777665
No 46
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=45.59 E-value=66 Score=19.30 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 95 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 95 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
.|..++..-++...+.++|...+.+--+.|...+-+-+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677899999999999999999888877776653
No 47
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.94 E-value=50 Score=24.00 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC
Q 032515 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~ 70 (139)
-..+||++|++.+.++....++..|.-+....+++.|.--. +...|.++-.+-|+
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdk-----------D~~vP~~W~eS~~~ 173 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDK-----------DTEVPEKWDESGPK 173 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCC-----------CccCCcchhcCCCe
Confidence 35799999999999988888888877677777777776333 33456666555554
No 48
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=41.81 E-value=29 Score=23.76 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCCccEEEEEEeCCCCCCCC-CcEEEEEEEc
Q 032515 30 SEDNMRYFNVMILGPTQSPYE-GGVFKLELFL 60 (139)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~t~y~-gg~f~~~i~f 60 (139)
...|...|.|++.|++||+.. +..|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 346778899999999988773 4555555555
No 49
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=40.84 E-value=33 Score=20.06 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=11.9
Q ss_pred CCCCccccHHHHHHHHHHH
Q 032515 81 DKWSPALQIRTVLLSIQAL 99 (139)
Q Consensus 81 ~~W~p~~~~~~il~~i~~l 99 (139)
-+|.|.++|.+++...-..
T Consensus 36 LgW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp C----SSSHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHH
Confidence 4799999999999876554
No 50
>PRK05414 urocanate hydratase; Provisional
Probab=38.68 E-value=35 Score=28.79 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=23.3
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 110 n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.|+.++..+||+.|.+.|++...++.
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 466888889999999999999988764
No 51
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=38.38 E-value=36 Score=28.64 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=23.1
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 110 n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.|+.++..+||+.|.+.|++...++.
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 466888889999999999999988764
No 52
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=37.22 E-value=11 Score=33.34 Aligned_cols=18 Identities=39% Similarity=0.759 Sum_probs=0.0
Q ss_pred EEEEEEEcCCCCCCCCCC
Q 032515 53 VFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~ 70 (139)
+=-+.|.+|.+||..+|.
T Consensus 715 VPPl~l~vP~~YP~~sp~ 732 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQ 732 (799)
T ss_dssp ------------------
T ss_pred CCCeeEeCCCCCCccCCc
Confidence 445789999999998887
No 53
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=37.21 E-value=47 Score=19.66 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=25.5
Q ss_pred cccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 108 PLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 108 p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
-++.+++..+.++-+.|.+.+-+.+.+|+.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999988888777764
No 54
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=37.17 E-value=59 Score=27.48 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=22.9
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 110 n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.|+.++..+||+.|.+.|++...++.
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 456778888999999999999988764
No 55
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=35.85 E-value=86 Score=19.39 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=27.0
Q ss_pred CCcccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 106 DDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 106 ~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
.+|-+.+|-..|.+-.+...+..+++.++|.
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5788999999999988888888888888885
No 56
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.42 E-value=54 Score=23.64 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
|..-.....+...|...|.. ++++-+..|.+|.+.|.++.++--++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~l~~l~~~ 156 (203)
T cd01145 111 WLDPNNAPALAKALADALIE------LDPSEQEEYKENLRVFLAKLNKLLRE 156 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 87777788888899888887 34445668888888888887654443
No 57
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=34.71 E-value=35 Score=25.99 Aligned_cols=30 Identities=27% Similarity=0.100 Sum_probs=22.7
Q ss_pred cccHHHHHHHHh-CHHHHHHHHHHHHHHHcC
Q 032515 108 PLSENIAKHWKT-NEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 108 p~n~~aa~~~~~-~~~~f~~~a~~~~~k~a~ 137 (139)
.+-..-...|.+ .++.|.+++++++++.|.
T Consensus 208 ~lQ~kyW~~Y~~~E~~lF~~~~~eHA~~lA~ 238 (251)
T PF14798_consen 208 FLQLKYWSIYIEKEQELFDETAKEHARKLAE 238 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456665 889999999999999885
No 58
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.41 E-value=80 Score=24.11 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 135 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~ 135 (139)
|-.-.+...++..|..-|.. ++++-+..|++|-+.|.++.++.-+++
T Consensus 124 Wldp~n~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~~~ 170 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSA------LDPDNAATYAANLEAFNARLAELDATI 170 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888999888887 556667799999999998877655443
No 59
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=33.72 E-value=1.1e+02 Score=18.38 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=16.2
Q ss_pred CccEEEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 032515 33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63 (139)
Q Consensus 33 ~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~ 63 (139)
....|.|.=. .+|.|++.|++|..
T Consensus 3 ~~~dW~Vsrt-------~dGdYrL~itcp~K 26 (71)
T PF11619_consen 3 SAADWEVSRT-------LDGDYRLVITCPKK 26 (71)
T ss_dssp TT-S-EEEEE-------TTTCEEEEEEESSH
T ss_pred ccccceeeec-------cCCceEEEEecCcH
Confidence 3456777766 26789999999873
No 60
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=33.32 E-value=1.8e+02 Score=21.60 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCC-CCCCcEEEEEEEcCCC
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQS-PYEGGVFKLELFLPEE 63 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t-~y~gg~f~~~i~fp~~ 63 (139)
.++..||.+.++++++.. .+...-|.+.+. |... -| || |.|.++|.++
T Consensus 8 ~s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~ 56 (235)
T PF14135_consen 8 KSPAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDD 56 (235)
T ss_pred CCHHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCC
Confidence 356688888877776522 122234777777 3332 24 44 8888888764
No 61
>PRK05114 hypothetical protein; Provisional
Probab=30.48 E-value=58 Score=19.02 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHHHHhcCC
Q 032515 1 MANSNLPRRIIKETQRLLSEP 21 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~ 21 (139)
|||+.|.+.+.+|+++-.+..
T Consensus 28 mSsgEAI~~VA~eiRe~~~~~ 48 (59)
T PRK05114 28 MSSGEAIALVAEELRANHQGE 48 (59)
T ss_pred ccHHHHHHHHHHHHHHHHhcc
Confidence 788999999999999876644
No 62
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=30.35 E-value=73 Score=18.55 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=18.4
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 032515 109 LSENIAKHWKTNEAEAVETAK 129 (139)
Q Consensus 109 ~n~~aa~~~~~~~~~f~~~a~ 129 (139)
-|++.+++..+|++.|.+...
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 599999999999999988654
No 63
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=29.41 E-value=1e+02 Score=19.28 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH
Q 032515 111 ENIAKHWKTNEAEAVETAKEWTRLY 135 (139)
Q Consensus 111 ~~aa~~~~~~~~~f~~~a~~~~~k~ 135 (139)
.+...+.++||++|.+..++..+..
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3456788999999998888776643
No 64
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=29.41 E-value=43 Score=19.65 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhc
Q 032515 7 PRRIIKETQRLLS 19 (139)
Q Consensus 7 ~~Rl~~E~~~l~~ 19 (139)
.+||++||+++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4789999998863
No 65
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.72 E-value=2.7e+02 Score=21.38 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCC
Q 032515 10 IIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67 (139)
Q Consensus 10 l~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~ 67 (139)
|.+=++-.+.-..+.+.+.|+-.|+..|+-.+. .-.+-|--=-.-|.|-+.||..
T Consensus 164 Isk~~~~~~~I~sP~f~vYPDiGNlsaw~ndv~---~El~lG~~~I~aiHlKDTy~vt 218 (287)
T COG3623 164 ISKWLKYDKYINSPWFTVYPDIGNLSAWNNDVQ---SELQLGIDKIVAIHLKDTYAVT 218 (287)
T ss_pred HHHHHHHHHHhCCCcEEecCCcccHhhhhhhHH---HHHHcCcCceEEEEeccccccc
Confidence 333333344445678999999999999987775 2244555555677888888854
No 66
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=28.53 E-value=63 Score=22.78 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=26.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccH-HHHHHHHhCHHHHHHHH
Q 032515 50 EGGVFKLELFLPEEYPMAAPKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSE-NIAKHWKTNEAEAVETA 128 (139)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~-~aa~~~~~~~~~f~~~a 128 (139)
.+|+|.+.-.|+..... +-.-..+...|...|..++.+.+...|+.- +.++.+.+.. ...+
T Consensus 78 ~~Gi~plk~fF~~~~~~---------------~~~~~~S~~~ik~~i~~lI~~Ed~~~PlSD~~i~~~L~~~g---i~is 139 (160)
T PF04552_consen 78 PRGIFPLKDFFSRSVSS---------------GSGEEFSSEAIKARIKELIEEEDKKKPLSDQEIAELLKEEG---IKIS 139 (160)
T ss_dssp -------S-----SS-----------------SS-SS---TTH-HHHHHHHTTS-TTS---HHHHHHHHTTTT---S---
T ss_pred CCeeeeHHHhccccccC---------------CCCcccHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcC---CCcc
Confidence 46788877777665431 111113455677789999999888888744 4566665432 5566
Q ss_pred HHHHHHH
Q 032515 129 KEWTRLY 135 (139)
Q Consensus 129 ~~~~~k~ 135 (139)
|.-|.||
T Consensus 140 RRTVaKY 146 (160)
T PF04552_consen 140 RRTVAKY 146 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 67
>PF15597 Imm36: Immunity protein 36
Probab=28.42 E-value=1.5e+02 Score=19.39 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=22.6
Q ss_pred EEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEc
Q 032515 26 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60 (139)
Q Consensus 26 ~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~f 60 (139)
++..++.+...|.+.|. |..+.|.+...-
T Consensus 23 Y~lF~E~~~~ew~v~i~------y~~~kf~Vy~td 51 (101)
T PF15597_consen 23 YVLFDEHNNLEWAVHIE------YKNGKFEVYSTD 51 (101)
T ss_pred EeeecCCCCCcceEEEE------EeCCEEEEEeec
Confidence 44457888999999999 888888875543
No 68
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=28.39 E-value=1.4e+02 Score=17.98 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=21.0
Q ss_pred CCCCeEE-eeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCC
Q 032515 21 PAPGISA-SPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62 (139)
Q Consensus 21 ~~~g~~~-~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~ 62 (139)
.+.|-++ ..++.....+.+++. +.+.+.++.|....
T Consensus 19 ~~~G~FLiR~s~~~~~~~~Lsv~------~~~~v~H~~I~~~~ 55 (94)
T cd00173 19 KPDGTFLVRDSESSPGDYVLSVR------VKGKVKHYRIERTD 55 (94)
T ss_pred CCCceEEEEecCCCCCCEEEEEE------ECCEEEEEEEEECC
Confidence 5566544 445445555666665 34577777776644
No 69
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=28.38 E-value=1.6e+02 Score=23.52 Aligned_cols=31 Identities=26% Similarity=0.571 Sum_probs=27.1
Q ss_pred ccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC
Q 032515 34 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 34 ~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~ 70 (139)
...+.+.|. |.|-..+-+|.|...||..||-
T Consensus 53 ~DRF~l~IP------y~~~~l~W~viFd~~~p~~pPD 83 (333)
T PF06113_consen 53 CDRFKLLIP------YCGEYLKWDVIFDAQYPEFPPD 83 (333)
T ss_pred cceEEEEee------ccCCEEEEEEEEcCCCCCCCCC
Confidence 456777774 9999999999999999999998
No 70
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.10 E-value=50 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=29.0
Q ss_pred CeEEeeCCCCccEEEEEEeCCCCC-CCC-----CcEEEEEEE--------cCCCCCCCCCC
Q 032515 24 GISASPSEDNMRYFNVMILGPTQS-PYE-----GGVFKLELF--------LPEEYPMAAPK 70 (139)
Q Consensus 24 g~~~~~~~~~~~~w~~~i~Gp~~t-~y~-----gg~f~~~i~--------fp~~YP~~pP~ 70 (139)
+++....+.+.....+.|.||.+- .|+ +|.|.|... |...++.--|+
T Consensus 44 ~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~s~mtpk 104 (201)
T KOG1692|consen 44 SVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKMSTMTPK 104 (201)
T ss_pred EEEEEEecCCccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCCCCCCce
Confidence 444555566778889999999885 333 366665443 44555544555
No 71
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=27.47 E-value=30 Score=22.63 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=17.7
Q ss_pred cCCCCCCCCCC-CCceecccCCCCCCc
Q 032515 60 LPEEYPMAAPK-LGRICLDILKDKWSP 85 (139)
Q Consensus 60 fp~~YP~~pP~-~G~vcl~~l~~~W~p 85 (139)
+|.+||..+-. .-.+|-.+|++.|-.
T Consensus 12 Lpk~~~~~~cSgR~~l~~~VLND~wvs 38 (102)
T smart00761 12 LPKSEKQPKCSGRDELCKEVLNDTWVS 38 (102)
T ss_pred CCcccCCCCCCCccHHHHHHhCCceEe
Confidence 67777753333 334888999999855
No 72
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.66 E-value=1.2e+02 Score=22.86 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=33.6
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
|..-.+...+...|...|.. ++++-+..|.+|.+.|.++.++-.++
T Consensus 98 Wldp~n~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~l~~l~~~ 143 (264)
T cd01020 98 WYDPETMSKVANALADALVK------ADPDNKKYYQANAKKFVASLKPLAAK 143 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 87777788888999998887 33344567888888888876655443
No 73
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=25.76 E-value=62 Score=24.15 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=16.0
Q ss_pred ccEEEEEEeCCCCCCCCC
Q 032515 34 MRYFNVMILGPTQSPYEG 51 (139)
Q Consensus 34 ~~~w~~~i~Gp~~t~y~g 51 (139)
-+.|+++|.|..+|+|++
T Consensus 203 ~y~FDI~Lqg~~etvf~~ 220 (220)
T TIGR02422 203 GYRFDIVLRGRRATPFEN 220 (220)
T ss_pred eEEEEEEEcCCCcCcCCC
Confidence 389999999999999975
No 74
>KOG4690 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.51 E-value=1.1e+02 Score=21.22 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.0
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 114 AKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 114 a~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
...|.+|-|.|++.-++.++++|+
T Consensus 96 WDVY~DdLEdYN~~r~~a~~~i~~ 119 (165)
T KOG4690|consen 96 WDVYSDDLEDYNHRRKEAAEKIAG 119 (165)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999886
No 75
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.28 E-value=3.3e+02 Score=24.78 Aligned_cols=72 Identities=13% Similarity=0.283 Sum_probs=42.2
Q ss_pred EEEEcCCCCCCCCCCCCceecccCCCCCCccccHHHHHHHHHHHhc-----CCCCCCc-ccHHH--HHHHH------h--
Q 032515 56 LELFLPEEYPMAAPKLGRICLDILKDKWSPALQIRTVLLSIQALLS-----APNPDDP-LSENI--AKHWK------T-- 119 (139)
Q Consensus 56 ~~i~fp~~YP~~pP~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~-----~p~~~~p-~n~~a--a~~~~------~-- 119 (139)
|.|.+|+=++ +|.+.+.. .-.+|+.++|.--+.|-- -|-.++. +-.++ -+.+. .
T Consensus 35 f~I~~PPPNV-----TG~LHmGH-----Al~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~ 104 (877)
T COG0525 35 FSIDTPPPNV-----TGSLHMGH-----ALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDL 104 (877)
T ss_pred cEEeCCCCCC-----CCcccchh-----hhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCcccc
Confidence 4455554333 78776532 223467777766655533 3666664 22222 22221 1
Q ss_pred CHHHHHHHHHHHHHHHcC
Q 032515 120 NEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 120 ~~~~f~~~a~~~~~k~a~ 137 (139)
.|++|.+++.+|..++.+
T Consensus 105 gRe~Fl~~~weWk~e~~~ 122 (877)
T COG0525 105 GREEFLKKCWEWKEESGG 122 (877)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 599999999999998864
No 76
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.03 E-value=1e+02 Score=23.11 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=33.5
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTR 133 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~ 133 (139)
|..-.....+...|..-|.. ++++-+..|.+|-+.|.++.++--+
T Consensus 115 Wldp~~~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~ 159 (266)
T cd01018 115 WLSPANAKIMAENIYEALAE------LDPQNATYYQANLDALLAELDALDS 159 (266)
T ss_pred CcCHHHHHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHHHHHHHH
Confidence 87777788888999998887 3445566888888888877665443
No 77
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.78 E-value=85 Score=16.97 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=16.1
Q ss_pred hCHHHHHHHHHHHHHHHcC
Q 032515 119 TNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 119 ~~~~~f~~~a~~~~~k~a~ 137 (139)
.|+-.|.++++..+.+|..
T Consensus 13 ~Dp~~yi~~i~~~~~~yGi 31 (42)
T smart00545 13 KDPLAYISKIRPQAEKYGI 31 (42)
T ss_pred HCHHHHHHHHHHHHhhCCE
Confidence 5899999999998888863
No 78
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=23.39 E-value=92 Score=22.56 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCC
Q 032515 50 EGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~ 70 (139)
+.|.|.|.=.||--||..+|-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~H 105 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATH 105 (188)
T ss_pred CCccEEEEEECCCCCCCCCce
Confidence 458999999999999998886
No 79
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=22.86 E-value=2.5e+02 Score=19.94 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCCccc-cHHHHHHHHHHHhcCCCCCCcccHH----HHHHHHhCHHHHHHHHHHHHHHH
Q 032515 82 KWSPAL-QIRTVLLSIQALLSAPNPDDPLSEN----IAKHWKTNEAEAVETAKEWTRLY 135 (139)
Q Consensus 82 ~W~p~~-~~~~il~~i~~ll~~p~~~~p~n~~----aa~~~~~~~~~f~~~a~~~~~k~ 135 (139)
...|.+ ++.+++..|..+|..- -+|.| .-..|+.|+.++.+-|+.---+|
T Consensus 6 ~~~p~~~sl~dLv~~lh~~F~~~----~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 6 VLKPRMISLVDLVVQLHEIFQQK----LVNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred ccCchhhhHHHHHHHHHHHHHhc----ccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 456655 7899999999988752 23444 23457778888888777654444
No 80
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=22.67 E-value=99 Score=21.19 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=18.3
Q ss_pred CCcEEEEEEEcCCCCC-CCCCC
Q 032515 50 EGGVFKLELFLPEEYP-MAAPK 70 (139)
Q Consensus 50 ~gg~f~~~i~fp~~YP-~~pP~ 70 (139)
+.|.|.|.-.+|-.|| ..||.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~H 85 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPH 85 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCE
Confidence 3599999999999999 88776
No 81
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=35 Score=27.52 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=47.8
Q ss_pred CCccEEE--EEEeCCCCC----CCCCcEEEEEEEcCCCCCCCCCCCCce-ecc--cCCCCCCccc--cHHHHHHHHHHHh
Q 032515 32 DNMRYFN--VMILGPTQS----PYEGGVFKLELFLPEEYPMAAPKLGRI-CLD--ILKDKWSPAL--QIRTVLLSIQALL 100 (139)
Q Consensus 32 ~~~~~w~--~~i~Gp~~t----~y~gg~f~~~i~fp~~YP~~pP~~G~v-cl~--~l~~~W~p~~--~~~~il~~i~~ll 100 (139)
.|+-.|. +.+.||||| ..++-.-++.|...+.|+. |.+ -++ .|...|-... -+..++..|+.|+
T Consensus 171 tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~-----~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 171 TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYK-----GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELV 245 (423)
T ss_pred CceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcccc-----ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4666665 567899997 2344556788889999983 442 221 2346786654 5889999999999
Q ss_pred cCCCC
Q 032515 101 SAPNP 105 (139)
Q Consensus 101 ~~p~~ 105 (139)
.+++.
T Consensus 246 ~d~~~ 250 (423)
T KOG0744|consen 246 EDRGN 250 (423)
T ss_pred hCCCc
Confidence 99765
No 82
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=22.30 E-value=1.8e+02 Score=22.56 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTR 133 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~ 133 (139)
|-.-.....+...|..-|.. ++++-+..|++|-+.|.++.++--+
T Consensus 148 Wldp~~~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~ 192 (311)
T PRK09545 148 WLSPEIARATAVAIHDKLVE------LMPQSKAKLDANLKDFEAQLAQTDK 192 (311)
T ss_pred cCCHHHHHHHHHHHHHHHHH------hChhhHHHHHHHHHHHHHHHHHHHH
Confidence 87777788888999888887 5555677899999999888665433
No 83
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=21.80 E-value=1.3e+02 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEcCC
Q 032515 36 YFNVMILGPTQSPYEGGVFKLELFLPE 62 (139)
Q Consensus 36 ~w~~~i~Gp~~t~y~gg~f~~~i~fp~ 62 (139)
-.++.+.|+...+=.|..+.+.|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 468899999998999999999999965
No 84
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=95 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=20.9
Q ss_pred CCCCCCCCCCceecccCCCCCCccc-cHHHHHH
Q 032515 63 EYPMAAPKLGRICLDILKDKWSPAL-QIRTVLL 94 (139)
Q Consensus 63 ~YP~~pP~~G~vcl~~l~~~W~p~~-~~~~il~ 94 (139)
+||+.-|++..| +=+.+++|++-+ |+.+||.
T Consensus 149 dYpe~Lpt~SVv-iVFHNEGws~LmRTVHSVi~ 180 (603)
T KOG3737|consen 149 DYPENLPTSSVV-IVFHNEGWSTLMRTVHSVIK 180 (603)
T ss_pred CCcccCCcceEE-EEEecCccHHHHHHHHHHHh
Confidence 577776664433 334579999966 8888874
No 85
>COG5437 Predicted secreted protein [Function unknown]
Probab=21.28 E-value=1.5e+02 Score=20.29 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=27.4
Q ss_pred CCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCceeccc
Q 032515 31 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICLDI 78 (139)
Q Consensus 31 ~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~~G~vcl~~ 78 (139)
++.+..|++++. .-+.+ ||.|.+ ..|+++.|.+|++-.++
T Consensus 85 d~s~~~wkvv~p--dfg~~-~G~fiv-----~aley~g~hD~evtf~i 124 (138)
T COG5437 85 DDSIVCWKVVNP--DFGLF-GGPFIV-----AALEYEGPHDGEVTFSI 124 (138)
T ss_pred cCCceEEEEEcc--Ccccc-cCcEEE-----EEeeecCCCCccEEEEE
Confidence 356789999884 45545 666666 46888888877765443
No 86
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=21.19 E-value=1e+02 Score=18.87 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=13.0
Q ss_pred CCcccHHHHHHH-------HhCHHHHHHHHHHHH
Q 032515 106 DDPLSENIAKHW-------KTNEAEAVETAKEWT 132 (139)
Q Consensus 106 ~~p~n~~aa~~~-------~~~~~~f~~~a~~~~ 132 (139)
++-+.++..+.| .+.-+.|+++.+++.
T Consensus 37 estlspemkehyekfe~miqehtdkfnkkm~ehs 70 (90)
T PF03037_consen 37 ESTLSPEMKEHYEKFERMIQEHTDKFNKKMHEHS 70 (90)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566654444 223445555555543
No 87
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=20.97 E-value=1.9e+02 Score=22.37 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=22.3
Q ss_pred EEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC
Q 032515 39 VMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 39 ~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~ 70 (139)
+.+.|..++.| ||.+...+.- .+||...-.
T Consensus 169 G~m~~~gd~AY-Gg~~Ea~lr~-kDyPi~~~~ 198 (273)
T PF11886_consen 169 GAMRGQGDVAY-GGNLEATLRG-KDYPIGQDQ 198 (273)
T ss_pred cEeeecCceee-ceeEEEEeec-CCCCCCCcc
Confidence 45666778888 8999988887 458876554
No 88
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.10 E-value=1.6e+02 Score=22.46 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
|..-..+..+...|..-|.. ++++-+..|.+|.+.|.++.++--++
T Consensus 120 Wldp~~~~~~a~~Ia~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~~ 165 (287)
T cd01137 120 WMSPKNAIIYVKNIAKALSE------ADPANAETYQKNAAAYKAKLKALDEW 165 (287)
T ss_pred CcCHHHHHHHHHHHHHHHHH------HCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 76666778888888888876 33344668888888888877665443
No 89
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.03 E-value=1.6e+02 Score=22.40 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=32.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHH
Q 032515 83 WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTR 133 (139)
Q Consensus 83 W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~ 133 (139)
|-.-.....+...|...|.. ++++-+..|.+|.+.|.++.++.-+
T Consensus 104 Wldp~~~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~ 148 (276)
T cd01016 104 WFDVKLWKYAVKAVAEVLSE------KLPEHKDEFQANSEAYVEELDSLDA 148 (276)
T ss_pred ccCHHHHHHHHHHHHHHHHH------HCcccHHHHHHHHHHHHHHHHHHHH
Confidence 76666778888899888887 3333466788888888877655433
Done!