Query 032515
Match_columns 139
No_of_seqs 148 out of 1135
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 03:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 1.3E-48 4.5E-53 273.2 17.9 137 2-138 1-151 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 3E-48 1E-52 272.1 14.6 137 1-138 2-152 (154)
3 2aak_A UBC1, ubiquitin conjuga 100.0 1.8E-47 6.3E-52 267.7 17.6 137 1-138 1-151 (152)
4 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.6E-47 5.4E-52 272.0 16.6 137 1-138 1-151 (169)
5 1z2u_A Ubiquitin-conjugating e 100.0 2.5E-47 8.6E-52 266.4 17.2 135 3-137 2-150 (150)
6 1zdn_A Ubiquitin-conjugating e 100.0 1.7E-47 5.8E-52 269.3 15.8 133 4-136 12-158 (158)
7 2ayv_A Ubiquitin-conjugating e 100.0 4.9E-47 1.7E-51 268.7 18.2 134 3-136 19-166 (166)
8 2bep_A Ubiquitin-conjugating e 100.0 4.4E-47 1.5E-51 267.5 17.3 135 4-138 7-159 (159)
9 2c4o_A Ubiquitin-conjugating e 100.0 5.7E-47 2E-51 268.2 17.8 134 4-137 18-165 (165)
10 2r0j_A Ubiquitin carrier prote 100.0 2.6E-47 8.8E-52 266.1 15.3 132 7-138 3-148 (149)
11 1yh2_A HSPC150 protein similar 100.0 1.2E-46 4.2E-51 267.5 18.3 136 3-138 2-155 (169)
12 1jat_A Ubiquitin-conjugating e 100.0 1.7E-47 5.7E-52 268.6 13.4 136 3-138 3-152 (155)
13 2e2c_A Ubiquitin conjugating e 100.0 1E-46 3.6E-51 264.8 16.5 134 4-138 8-155 (156)
14 1fxt_A Ubiquitin-conjugating e 100.0 4E-47 1.4E-51 265.2 13.6 132 6-137 2-149 (149)
15 2ucz_A UBC7, ubiquitin conjuga 100.0 1.7E-46 5.6E-51 266.0 16.7 136 1-137 1-164 (165)
16 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.5E-46 5.2E-51 271.6 16.7 136 3-138 30-193 (193)
17 3k9o_A Ubiquitin-conjugating e 100.0 2.7E-46 9.2E-51 272.3 17.6 137 1-138 2-156 (201)
18 2gjd_A Ubiquitin-conjugating e 100.0 3.3E-46 1.1E-50 262.5 16.5 136 1-137 1-157 (157)
19 2pwq_A Ubiquitin conjugating e 100.0 2.2E-46 7.4E-51 274.8 16.2 136 3-138 21-171 (216)
20 3h8k_A Ubiquitin-conjugating e 100.0 7.1E-46 2.4E-50 262.5 18.1 134 4-137 2-163 (164)
21 3rcz_B SUMO-conjugating enzyme 100.0 4.1E-46 1.4E-50 263.3 16.2 135 3-137 8-163 (163)
22 3bzh_A Ubiquitin-conjugating e 100.0 9.2E-46 3.1E-50 267.8 17.7 134 4-137 47-194 (194)
23 2grr_A Ubiquitin-conjugating e 100.0 6.9E-46 2.3E-50 261.8 15.5 137 1-138 4-161 (161)
24 3e46_A Ubiquitin-conjugating e 100.0 3.9E-45 1.3E-49 273.5 17.1 135 4-138 56-208 (253)
25 1i7k_A Ubiquitin-conjugating e 100.0 2.2E-45 7.6E-50 262.8 14.7 135 3-138 28-176 (179)
26 1wzv_A Ubiquitin-conjugating e 100.0 3.5E-45 1.2E-49 256.8 15.4 134 4-138 3-152 (155)
27 3rz3_A Ubiquitin-conjugating e 100.0 3E-45 1E-49 263.3 14.8 137 1-137 3-173 (183)
28 3fn1_B NEDD8-conjugating enzym 100.0 4.2E-44 1.4E-48 254.1 16.6 133 4-137 13-167 (167)
29 1tte_A Ubiquitin-conjugating e 100.0 6.3E-45 2.1E-49 266.9 12.5 134 5-138 2-151 (215)
30 1yrv_A Ubiquitin-conjugating l 100.0 1.5E-44 5.1E-49 256.6 13.1 132 1-134 20-168 (169)
31 2y9m_A Ubiquitin-conjugating e 100.0 1.1E-43 3.7E-48 252.9 16.1 137 1-138 3-169 (172)
32 2onu_A Ubiquitin-conjugating e 100.0 6.2E-45 2.1E-49 254.7 9.5 131 5-138 2-148 (152)
33 2z5d_A Ubiquitin-conjugating e 100.0 2.8E-44 9.6E-49 256.9 11.4 134 1-138 20-170 (179)
34 2awf_A Ubiquitin-conjugating e 100.0 1.7E-43 5.9E-48 251.9 13.6 130 2-131 14-172 (172)
35 1c4z_D UBCH7, ubiquitin conjug 100.0 5.1E-44 1.8E-48 250.6 9.5 132 6-138 3-150 (154)
36 1yf9_A Ubiquitin carrier prote 100.0 3.5E-43 1.2E-47 249.9 12.3 130 5-138 12-157 (171)
37 4ddg_A Ubiquitin-conjugating e 100.0 1.4E-42 4.7E-47 275.0 16.9 136 4-139 2-151 (399)
38 1y8x_A Ubiquitin-conjugating e 100.0 2.1E-42 7.2E-47 243.7 15.9 128 4-134 5-147 (160)
39 2nvu_C NEDD8-conjugating enzym 100.0 5.3E-42 1.8E-46 245.6 15.5 129 3-134 24-167 (180)
40 3o2u_A NEDD8-conjugating enzym 100.0 3.8E-41 1.3E-45 243.1 14.4 130 3-135 27-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 6.4E-40 2.2E-44 232.5 11.0 128 1-129 5-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 3.4E-38 1.2E-42 242.2 12.5 135 3-137 74-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 4.5E-37 1.6E-41 215.5 8.8 117 3-120 19-156 (156)
44 1jat_B Ubiquitin-conjugating e 100.0 2E-37 6.9E-42 213.5 5.7 116 1-117 2-138 (138)
45 2fo3_A Ubiquitin-conjugating e 100.0 5E-36 1.7E-40 203.4 12.0 104 4-107 5-123 (125)
46 2f4w_A Ubiquitin-conjugating e 100.0 2.2E-35 7.5E-40 212.5 14.0 105 3-107 12-131 (187)
47 2a4d_A Ubiquitin-conjugating e 100.0 6.5E-36 2.2E-40 210.2 11.0 111 4-114 24-156 (160)
48 2h2y_A Ubiquitin-conjugating e 100.0 3.1E-35 1.1E-39 202.0 13.9 102 4-105 19-135 (136)
49 2a7l_A Hypothetical ubiquitin- 100.0 2.2E-34 7.4E-39 197.7 11.3 99 1-101 20-136 (136)
50 2hlw_A Ubiquitin-conjugating e 100.0 4.9E-35 1.7E-39 207.7 7.8 111 4-114 34-166 (170)
51 1zuo_A Hypothetical protein LO 100.0 2.9E-34 9.8E-39 206.4 3.9 126 3-136 25-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.6E-23 8.9E-28 144.9 2.0 82 7-94 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.6 3.2E-15 1.1E-19 104.6 9.0 100 7-107 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.5 3.7E-15 1.3E-19 101.9 0.6 74 6-88 35-133 (168)
55 3obq_A Tumor susceptibility ge 99.1 4E-11 1.4E-15 82.5 5.2 68 30-102 49-138 (146)
56 2day_A Ring finger protein 25; 96.9 0.0096 3.3E-07 39.2 9.2 64 7-70 10-77 (128)
57 2ebm_A RWD domain-containing p 96.7 0.014 4.8E-07 38.4 8.8 89 6-101 11-99 (128)
58 2yz0_A Serine/threonine-protei 96.5 0.034 1.2E-06 37.0 9.7 62 8-70 13-80 (138)
59 3zqs_A E3 ubiquitin-protein li 95.9 0.061 2.1E-06 38.0 8.7 83 9-102 5-88 (186)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.3 0.26 9E-06 32.4 9.8 63 7-70 12-81 (137)
61 2cwb_A Chimera of immunoglobul 93.9 0.01 3.6E-07 38.3 0.0 35 103-137 21-55 (108)
62 2ebk_A RWD domain-containing p 93.4 0.22 7.4E-06 32.5 5.9 85 8-100 10-98 (128)
63 2daw_A RWD domain containing p 92.2 0.6 2.1E-05 31.6 6.9 51 53-109 76-126 (154)
64 2dax_A Protein C21ORF6; RWD do 88.4 0.52 1.8E-05 31.7 3.9 19 52-70 73-91 (152)
65 3u3c_B Paxillin LD2 peptide; 4 74.0 2.7 9.1E-05 19.2 2.1 21 5-25 5-25 (26)
66 2rp4_A Transcription factor P5 50.3 27 0.00091 20.5 3.9 23 34-63 9-31 (76)
67 1m46_B IQ4, IQ4 motif from MYO 40.6 19 0.00065 16.3 1.7 13 5-17 8-20 (26)
68 1h3o_B Transcription initiatio 37.6 49 0.0017 19.5 3.8 42 96-137 11-52 (76)
69 4b0y_A Heme-binding protein 2; 36.5 1.1E+02 0.0038 21.8 6.3 59 44-102 117-186 (227)
70 2fkn_A Urocanate hydratase; ro 34.2 46 0.0016 27.0 4.2 27 110-136 277-303 (552)
71 1x87_A Urocanase protein; stru 33.9 47 0.0016 26.9 4.2 27 110-136 276-302 (551)
72 1uwk_A Urocanate hydratase; hy 33.5 48 0.0016 26.9 4.2 27 110-136 281-307 (557)
73 2f4m_B UV excision repair prot 30.7 54 0.0018 18.5 3.0 20 109-128 37-56 (61)
74 1pve_A HHR23B, UV excision rep 29.8 42 0.0014 19.6 2.6 21 109-129 39-59 (72)
75 1taf_B TFIID TBP associated fa 28.0 52 0.0018 19.0 2.7 31 107-137 22-52 (70)
76 3uam_A Chitin binding domain; 27.7 18 0.0006 25.9 0.7 8 68-75 75-82 (216)
77 2jrw_A Cyclic extended PEP.1; 26.7 20 0.00069 16.2 0.6 6 59-64 6-11 (26)
78 1zoq_C CREB-binding protein, i 24.3 61 0.0021 17.1 2.3 43 93-137 3-46 (47)
79 3r8j_A Heme-binding protein 2; 24.1 1.2E+02 0.004 21.4 4.5 59 44-102 98-167 (212)
80 2wb7_A PT26-6P; extra chromoso 24.1 1.1E+02 0.0037 24.8 4.7 69 6-77 20-88 (526)
81 4dac_A Computationally designe 23.6 63 0.0021 14.8 2.0 14 6-19 9-22 (28)
82 3k1l_B Fancl; UBC, ring, RWD, 23.1 1.3E+02 0.0043 23.4 4.7 76 15-101 8-94 (381)
83 3rls_A YAF9, protein AF-9 homo 22.8 1.7E+02 0.0059 20.0 5.0 36 31-66 29-64 (175)
84 3g9r_A Fusion complex of HIV-1 22.5 61 0.0021 16.6 2.0 14 6-19 29-42 (42)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.3e-48 Score=273.16 Aligned_cols=137 Identities=45% Similarity=0.831 Sum_probs=132.9
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-----------
Q 032515 2 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK----------- 70 (139)
Q Consensus 2 s~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~----------- 70 (139)
|+..|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 1 sa~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 80 (151)
T 4gpr_A 1 SAAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN 80 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ---LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ---~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+||+++|.++|+|++|+.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+||++||++
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999986
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3e-48 Score=272.14 Aligned_cols=137 Identities=78% Similarity=1.294 Sum_probs=130.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
|| ..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 2 ~s-~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (154)
T 2c2v_B 2 GS-AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP 80 (154)
T ss_dssp CS-CSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred cc-HHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccC
Confidence 44 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||++
T Consensus 81 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 81 NVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp TBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999986
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.8e-47 Score=267.65 Aligned_cols=137 Identities=34% Similarity=0.737 Sum_probs=132.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
|| ..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 1 Ms-~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (152)
T 2aak_A 1 MS-TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP 79 (152)
T ss_dssp CC-CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred CC-hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccC
Confidence 76 5788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 80 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999974
No 4
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-47 Score=271.96 Aligned_cols=137 Identities=38% Similarity=0.732 Sum_probs=132.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
|| ..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+
T Consensus 1 Ms-~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 79 (169)
T 1ayz_A 1 MS-TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP 79 (169)
T ss_dssp -C-CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred CC-hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence 77 5788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 80 NI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 80 NVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 151 (169)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999963
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.5e-47 Score=266.42 Aligned_cols=135 Identities=47% Similarity=0.829 Sum_probs=131.6
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
|..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 46788999999999999999999999989999999999999999999999999999999999999998
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+|||++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 82 NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999996
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-47 Score=269.34 Aligned_cols=133 Identities=35% Similarity=0.694 Sum_probs=130.1
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
..+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 91 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
+|+|||++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||
T Consensus 92 ~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 92 ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999999999999999999999999999999999999998
No 7
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-47 Score=268.70 Aligned_cols=134 Identities=49% Similarity=0.860 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+..+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 35678999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
+|.|||++|.++|+|++++.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 99 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 99 NSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999999999998
No 8
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.4e-47 Score=267.48 Aligned_cols=135 Identities=41% Similarity=0.751 Sum_probs=130.2
Q ss_pred CchHHHHHHHHHHHhcC---CCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 4 SNLPRRIIKETQRLLSE---PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 7 ~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 86 (159)
T 2bep_A 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCcc
Confidence 46889999999999985 57899999999999999999999999999999999999999999999998
Q ss_pred -----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 -----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 -----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 87 ni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 87 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999985
No 9
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=5.7e-47 Score=268.20 Aligned_cols=134 Identities=49% Similarity=0.844 Sum_probs=130.8
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+|||++|.++|+|++++.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999995
No 10
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.6e-47 Score=266.09 Aligned_cols=132 Identities=65% Similarity=1.161 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------CC
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------------LG 72 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------------~G 72 (139)
.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+ +|
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 73 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 73 ~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|||++|.++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred EEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 11
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-46 Score=267.52 Aligned_cols=136 Identities=45% Similarity=0.819 Sum_probs=132.5
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+..+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCceecccCC----CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --LGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --~G~vcl~~l~----~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|. ++|+|++++.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||++
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 8999999998 8999999999999999999999999999999999999999999999999999999986
No 12
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.7e-47 Score=268.62 Aligned_cols=136 Identities=65% Similarity=1.196 Sum_probs=131.8
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+..+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 3 ~~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 3 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp CCSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999974
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1e-46 Score=264.82 Aligned_cols=134 Identities=37% Similarity=0.663 Sum_probs=130.1
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
..+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 5688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+|++||.+|++++|+|.+||++| +|+++|.++||+|+++||.+
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 88 QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred cCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999 89999999999999999864
No 14
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=4e-47 Score=265.17 Aligned_cols=132 Identities=42% Similarity=0.810 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCC-CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------------- 70 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------------- 70 (139)
+.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999999999999999877 99999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+|||++|.++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999996
No 15
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-46 Score=265.98 Aligned_cols=136 Identities=32% Similarity=0.685 Sum_probs=130.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCC-CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
|| +.+.+||++|+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 1 M~-~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 1 MS-KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp -C-HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CC-hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 77 4788999999999999999999999865 799999999999999999999999999999999999999
Q ss_pred -----CCceecccC-------------CCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 032515 71 -----LGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 132 (139)
Q Consensus 71 -----~G~vcl~~l-------------~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 132 (139)
+|+|||++| .++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus 80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~ 159 (165)
T 2ucz_A 80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159 (165)
T ss_dssp TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 899999999 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 032515 133 RLYAS 137 (139)
Q Consensus 133 ~k~a~ 137 (139)
++++.
T Consensus 160 ~~~~~ 164 (165)
T 2ucz_A 160 LKSLG 164 (165)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99975
No 16
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-46 Score=271.57 Aligned_cols=136 Identities=43% Similarity=0.733 Sum_probs=127.1
Q ss_pred CCchHHHHHHHHHHHhcCCC-------------CCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q 032515 3 NSNLPRRIIKETQRLLSEPA-------------PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~-------------~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP 69 (139)
+..+.+||++|+++|+++++ .|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 44678999999999999887 79999999999999999999999999999999999999999999999
Q ss_pred C---------------CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 70 K---------------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 70 ~---------------~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
+ +|+|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++
T Consensus 110 ~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ 189 (193)
T 2f4z_A 110 KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 189 (193)
T ss_dssp EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCC
Q 032515 135 YASG 138 (139)
Q Consensus 135 ~a~~ 138 (139)
||+.
T Consensus 190 ya~~ 193 (193)
T 2f4z_A 190 FAKE 193 (193)
T ss_dssp HCC-
T ss_pred HccC
Confidence 9973
No 17
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.7e-46 Score=272.32 Aligned_cols=137 Identities=42% Similarity=0.754 Sum_probs=130.4
Q ss_pred CCCCchHHHHHHHHHHHhcCC---CCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------
Q 032515 1 MANSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~---~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------- 70 (139)
|| +.+.+||++|+++|++++ +.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 2 Ms-~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 80 (201)
T 3k9o_A 2 MA-NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 80 (201)
T ss_dssp ---CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred Cc-HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCc
Confidence 76 567899999999998873 6899999999999999999999999999999999999999999999998
Q ss_pred --------CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --------~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++|+|++|+.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+||++||++
T Consensus 81 ~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 81 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp CBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999986
No 18
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.3e-46 Score=262.52 Aligned_cols=136 Identities=29% Similarity=0.580 Sum_probs=128.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCC-----CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-----
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~----- 70 (139)
|| +.+.+||++|+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 1 Ms-~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (157)
T 2gjd_A 1 MS-SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA 79 (157)
T ss_dssp ---CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred CC-hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence 77 5788999999999999999999998764 489999999999999999999999999999999999998
Q ss_pred ---------CCceecccCCC--CCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 ---------LGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 ---------~G~vcl~~l~~--~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+|||++|.+ +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 80 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 80 GFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 79999999976 79999999999999999999999999999999999999999999999999999996
No 19
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=2.2e-46 Score=274.83 Aligned_cols=136 Identities=47% Similarity=0.784 Sum_probs=132.3
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
++.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ---LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ---~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999985
No 20
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=7.1e-46 Score=262.50 Aligned_cols=134 Identities=30% Similarity=0.633 Sum_probs=129.4
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCC-CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+.|.|||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 57889999999999999999999998765 99999999999999999999999999999999999998
Q ss_pred --CCceecccCC-------------CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 032515 71 --LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 135 (139)
Q Consensus 71 --~G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~ 135 (139)
+|+||+++|. ++|+|++|+++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|++|+
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s 161 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 7999999996 7899999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 032515 136 AS 137 (139)
Q Consensus 136 a~ 137 (139)
+.
T Consensus 162 ~~ 163 (164)
T 3h8k_A 162 LG 163 (164)
T ss_dssp HT
T ss_pred hc
Confidence 85
No 21
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-46 Score=263.29 Aligned_cols=135 Identities=32% Similarity=0.591 Sum_probs=128.9
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCC-----CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------- 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------- 70 (139)
|..|.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||+|+|.|.||++||++||+
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 568899999999999999999999998765 99999999999999999999999999999999999999
Q ss_pred -------CCceecccCCC--CCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 -------LGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 -------~G~vcl~~l~~--~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+||+++|.+ +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||+|||.
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 69999999975 49999999999999999999999999999999999999999999999999999983
No 22
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=9.2e-46 Score=267.78 Aligned_cols=134 Identities=50% Similarity=0.817 Sum_probs=130.5
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
+.+.+||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 3478999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|.|||++|.++|+|++++.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999996
No 23
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6.9e-46 Score=261.84 Aligned_cols=137 Identities=30% Similarity=0.598 Sum_probs=129.5
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCC-----CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-----
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~----- 70 (139)
|+ ..+.+||++|+++|+++++.|+.+.+.. +|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 4 M~-~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 82 (161)
T 2grr_A 4 MS-GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP 82 (161)
T ss_dssp CC-HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cc-HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence 54 5688999999999999999999998753 689999999999999999999999999999999999999
Q ss_pred ---------CCceecccCCC--CCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ---------LGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ---------~G~vcl~~l~~--~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.||+++|.+ +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||++
T Consensus 83 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 83 PLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred CcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 89999999975 899999999999999999999999999999999999999999999999999999974
No 24
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=3.9e-45 Score=273.45 Aligned_cols=135 Identities=41% Similarity=0.751 Sum_probs=130.4
Q ss_pred CchHHHHHHHHHHHhcC---CCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 4 SNLPRRIIKETQRLLSE---PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 135 (253)
T 3e46_A 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 135 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccC
Confidence 56889999999999887 47899999999999999999999999999999999999999999999998
Q ss_pred -----CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 -----LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 -----~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++|+|+++|.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+||++||++
T Consensus 136 NV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 136 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp TBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999985
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-45 Score=262.82 Aligned_cols=135 Identities=37% Similarity=0.563 Sum_probs=129.3
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+..+.+||++|+++|+++++.||++.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 107 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV 107 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++++
T Consensus 108 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 108 DTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred ccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999 99999999999999999874
No 26
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3.5e-45 Score=256.81 Aligned_cols=134 Identities=29% Similarity=0.569 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEE-eeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISA-SPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~-~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
..+.+||++|+++|+++++.|+.+ .++++|+++|+++|. |++|||+||+|+|+|.||++||++||+
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 357899999999999999999999 788999999999999 999999999999999999999999999
Q ss_pred --CCceecccC-CCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --LGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --~G~vcl~~l-~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+||+++| .++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 899999999 89999999999999999999999999999999999999999999999999999999974
No 27
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=3e-45 Score=263.27 Aligned_cols=137 Identities=28% Similarity=0.593 Sum_probs=129.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEe-eCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
|++..+.|||++|+++|+++++.|+++. ++++|+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 8889999999999999999999999999 778899999999999999999999999999999999999998
Q ss_pred -----CCceecccCC-------------CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHh------CHHHHHH
Q 032515 71 -----LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKT------NEAEAVE 126 (139)
Q Consensus 71 -----~G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~------~~~~f~~ 126 (139)
+|+|||++|. ++|+|++|+++||.+|++||.+||+++|+|.+||.+|++ |+++|++
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~ 162 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTD 162 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHH
Confidence 8999999996 889999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHHHHcC
Q 032515 127 TAKEWTRLYAS 137 (139)
Q Consensus 127 ~a~~~~~k~a~ 137 (139)
+||++|+++..
T Consensus 163 ~v~~~v~~s~~ 173 (183)
T 3rz3_A 163 IIRKQVLGTKV 173 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 28
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.2e-44 Score=254.07 Aligned_cols=133 Identities=26% Similarity=0.538 Sum_probs=126.8
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEee-CCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~-~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+.+.+||++|+++|+++++.|+++.+ +++|++.|+++| ||++|||+||+|+|+|.||++||++||+
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 56889999999999999999999985 567899999999 8999999999999999999999999999
Q ss_pred --CCceecccCCC------CCCccccHHHHHHHHHHHhcC-CCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 71 --LGRICLDILKD------KWSPALQIRTVLLSIQALLSA-PNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 71 --~G~vcl~~l~~------~W~p~~~~~~il~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
+|+|||++|.. +|+|++|+.+||.+|+++|.+ ||+++|+|.+||++|++|+++|.++||+||++||+
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 79999999975 799999999999999999999 79999999999999999999999999999999995
No 29
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.3e-45 Score=266.90 Aligned_cols=134 Identities=40% Similarity=0.797 Sum_probs=128.7
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeeCCC-CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 5 NLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
.+.+||++|+++|++++++|+++.+.++ ++++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4679999999999999999999998776 56799999999999999999999999999999999998
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+|+++||++
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999975
No 30
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-44 Score=256.58 Aligned_cols=132 Identities=26% Similarity=0.434 Sum_probs=126.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
|+ ..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 20 M~-~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 98 (169)
T 1yrv_A 20 MH-GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHP 98 (169)
T ss_dssp GG-CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCT
T ss_pred cC-hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccC
Confidence 55 4688999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----CCceecccCC--CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 71 -----LGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 71 -----~G~vcl~~l~--~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
+|+|||++|. ++|+|++++.+||.+|++||.+|++++|+|.+||++|++|+++|.++ |+++++
T Consensus 99 NI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 99 NVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred cccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 7999999998 89999999999999999999999999999999999999999999999 888864
No 31
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.1e-43 Score=252.93 Aligned_cols=137 Identities=29% Similarity=0.513 Sum_probs=125.7
Q ss_pred CCCCchHHHHHHHHHHHhc-C-C------CC---CeEEee-CCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCC
Q 032515 1 MANSNLPRRIIKETQRLLS-E-P------AP---GISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~-~-~------~~---g~~~~~-~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~p 68 (139)
|| ..+.+||++|+++|++ + + +. ++.+.+ +++|+++|+++|.||++|||+||+|+|+|.||++||++|
T Consensus 3 Ms-~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P 81 (172)
T 2y9m_A 3 MA-DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81 (172)
T ss_dssp -C-HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred Cc-HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence 44 5688999999999998 4 3 33 466777 788999999999999999999999999999999999999
Q ss_pred CC----------------CCceecccCC-CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHh-CHHHHHHHHHH
Q 032515 69 PK----------------LGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKT-NEAEAVETAKE 130 (139)
Q Consensus 69 P~----------------~G~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~-~~~~f~~~a~~ 130 (139)
|+ +|+|||++|. ++|+|++++.+||.+|++||.+|++++|+|.+||++|++ |+++|.++||+
T Consensus 82 P~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~ 161 (172)
T 2y9m_A 82 PKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161 (172)
T ss_dssp CEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHH
T ss_pred CEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHH
Confidence 98 6999999998 899999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHcCC
Q 032515 131 WTRLYASG 138 (139)
Q Consensus 131 ~~~k~a~~ 138 (139)
|+++++.-
T Consensus 162 ~~~~~~~~ 169 (172)
T 2y9m_A 162 FLAERERI 169 (172)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99998753
No 32
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=6.2e-45 Score=254.71 Aligned_cols=131 Identities=32% Similarity=0.651 Sum_probs=124.4
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------
Q 032515 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------------- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------------- 70 (139)
++.+||++|+++|++ .|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 2 sa~~Rl~kEl~~l~~---~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHH---HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCc---CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 456999999999987 378888889999999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 6999999999999999999999999 6899999999999999999999999999999999999999975
No 33
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=256.90 Aligned_cols=134 Identities=30% Similarity=0.608 Sum_probs=124.2
Q ss_pred CCCC-chHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 1 MANS-NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 1 ms~~-~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
|++. .+.+||++|+++|+. .|+++.+. +|++.|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~H 95 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFH 95 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCcc
Confidence 5543 578999999999985 57888876 678999999999999999999999999999999999998
Q ss_pred ------CCceecccCCCCCCccccHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 ------LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ------~G~vcl~~l~~~W~p~~~~~~il~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|.|||++|.++|+|++++.+||.+ |++||.+||+++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 96 PNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 96 PNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred CcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 7999999999999999999999999 9999999999999999999999999999999999999999973
No 34
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.7e-43 Score=251.85 Aligned_cols=130 Identities=30% Similarity=0.654 Sum_probs=97.0
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCeEEeeCC-CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC----------
Q 032515 2 ANSNLPRRIIKETQRLLSEPAPGISASPSE-DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 2 s~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~---------- 70 (139)
++..+.+||++|+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP 93 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP 93 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence 357889999999999999999999999865 799999999999999999999999999999999999999
Q ss_pred ----CCceecccCC-------------CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHH-HHHHHHHHH
Q 032515 71 ----LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEA-EAVETAKEW 131 (139)
Q Consensus 71 ----~G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~-~f~~~a~~~ 131 (139)
+|+|||++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++ +|+++||+|
T Consensus 94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 8999999996 689999999999999999999999999999999999999999 999999986
No 35
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=5.1e-44 Score=250.63 Aligned_cols=132 Identities=29% Similarity=0.657 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEe-eCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------
Q 032515 6 LPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------------- 70 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------------- 70 (139)
+.+||++|+++|+++++.|+.+. ++++|+++|+++|. |++|||+||+|+|+|.||++||++||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 56899999999999999999865 47789999999998 999999999999999999999999998
Q ss_pred CCceecccCC-CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 LGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 ~G~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|. ++|+|++|+.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 8999999996 8999999999999999999999999999999999999999999999999999999975
No 36
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-43 Score=249.94 Aligned_cols=130 Identities=28% Similarity=0.528 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------------
Q 032515 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------------- 70 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------------- 70 (139)
.+.+||++|+++|++++. ++ +.++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 567999999999998874 44 347899999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 138 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~ 138 (139)
+|+|||++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 69999999999999999999999997 799999999999999999999999999999999999999974
No 37
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.4e-42 Score=274.97 Aligned_cols=136 Identities=47% Similarity=0.819 Sum_probs=132.3
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
+.|.|||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 4578999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcCCC
Q 032515 71 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 139 (139)
Q Consensus 71 -~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~~~ 139 (139)
+|.||+++|+++|+|++|+.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+||++||++.
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~ 151 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGG 151 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCT
T ss_pred CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999863
No 38
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-42 Score=243.71 Aligned_cols=128 Identities=29% Similarity=0.548 Sum_probs=122.5
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEe-eCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+.+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 46889999999999 567899998 7889999999998 9999999999999999999999999999
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
+|.|||++|.++|+|++++.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999999873
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-42 Score=245.63 Aligned_cols=129 Identities=28% Similarity=0.514 Sum_probs=123.2
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEe-eCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-----------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK----------- 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~----------- 70 (139)
++.+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 356889999999999 578899998 7889999999999 9999999999999999999999999999
Q ss_pred ---CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032515 71 ---LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 134 (139)
Q Consensus 71 ---~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k 134 (139)
+|.|||++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999999874
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.8e-41 Score=243.05 Aligned_cols=130 Identities=28% Similarity=0.524 Sum_probs=123.6
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEe----eCCCCcc---EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-----
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISAS----PSEDNMR---YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~----~~~~~~~---~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~----- 70 (139)
++.+.+||++|+++|+ +++|+++. ++++|++ +|+++|. |++|||+||+|+|.|.||++||++||+
T Consensus 27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 103 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK 103 (190)
T ss_dssp CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence 3678899999999998 67899998 8889999 9999997 888999999999999999999999998
Q ss_pred ---------CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 032515 71 ---------LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 135 (139)
Q Consensus 71 ---------~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~ 135 (139)
+|.||+++|.++|+|++|+.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|++..
T Consensus 104 ~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 104 KIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp CCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred CcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999999999999999999654
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6.4e-40 Score=232.54 Aligned_cols=128 Identities=22% Similarity=0.419 Sum_probs=119.3
Q ss_pred CCCCchHHHHHHHHHHHhcCC------------CCCeEEeeCCCCccEEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCC
Q 032515 1 MANSNLPRRIIKETQRLLSEP------------APGISASPSEDNMRYFNVMILGPTQSPYE--GGVFKLELFLPEEYPM 66 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~------------~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~--gg~f~~~i~fp~~YP~ 66 (139)
|| +.+.|||++|+++|++++ +.|+.+.++++|+++|+++|.||++|||+ ||.|+|.|.||++||+
T Consensus 5 Ms-~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~ 83 (167)
T 4ds2_A 5 MK-NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPH 83 (167)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTT
T ss_pred cc-HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCC
Confidence 66 567899999999999877 77999999999999999999999999999 9999999999999999
Q ss_pred CCCC--------------CCceecccCCCCCCccccHHHHHH-HHHHHhcC--CCCCCcccHHHHHHHHhCHHHHHHHHH
Q 032515 67 AAPK--------------LGRICLDILKDKWSPALQIRTVLL-SIQALLSA--PNPDDPLSENIAKHWKTNEAEAVETAK 129 (139)
Q Consensus 67 ~pP~--------------~G~vcl~~l~~~W~p~~~~~~il~-~i~~ll~~--p~~~~p~n~~aa~~~~~~~~~f~~~a~ 129 (139)
+||+ +|.||+++|.++|+|++++.++|. .|+.|+.. |++++|+|.|||++|++|+++|.++||
T Consensus 84 ~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 84 EPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp SCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred CCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999 799999999999999999999765 57777775 899999999999999999999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=242.16 Aligned_cols=135 Identities=27% Similarity=0.538 Sum_probs=124.6
Q ss_pred CCchHHHHHHHHHHHhcCCCCC----eEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPG----ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------- 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g----~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------- 70 (139)
+..+.+||++|++.|+++++.| +.+.++++|++.|+++|.||++|||+||+|+|.|.||++||++||+
T Consensus 74 s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g 153 (323)
T 3ceg_A 74 SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGG 153 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCC
Confidence 4678899999999999987764 5677889999999999999999999999999999999999999998
Q ss_pred -----------CCceecccCC-------CCCCccc-cHHHHHHHHHHHhc--CCCCCCcccHHH--HHHHHhCHHHHHHH
Q 032515 71 -----------LGRICLDILK-------DKWSPAL-QIRTVLLSIQALLS--APNPDDPLSENI--AKHWKTNEAEAVET 127 (139)
Q Consensus 71 -----------~G~vcl~~l~-------~~W~p~~-~~~~il~~i~~ll~--~p~~~~p~n~~a--a~~~~~~~~~f~~~ 127 (139)
+|+|||++|. ++|+|++ ||.+||.+|++||. +|++++|+|.++ +.+|.+|++.|.++
T Consensus 154 ~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~ 233 (323)
T 3ceg_A 154 HSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGN 233 (323)
T ss_dssp TTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHH
T ss_pred CcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHH
Confidence 4999999997 6899999 89999999999996 677899999987 67999999999999
Q ss_pred HHHHHHHHcC
Q 032515 128 AKEWTRLYAS 137 (139)
Q Consensus 128 a~~~~~k~a~ 137 (139)
||+|++|||+
T Consensus 234 vr~~t~k~A~ 243 (323)
T 3ceg_A 234 IRQATVKWAM 243 (323)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999997
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=4.5e-37 Score=215.47 Aligned_cols=117 Identities=23% Similarity=0.434 Sum_probs=106.5
Q ss_pred CCchHHHHHHHHHHHhcC-CCCCeEEeeCC-C--CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------
Q 032515 3 NSNLPRRIIKETQRLLSE-PAPGISASPSE-D--NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------- 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~-~~~g~~~~~~~-~--~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------- 70 (139)
...+.+||++|+++|+++ ++.|+++.+.+ + |+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~ 98 (156)
T 2q0v_A 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE 98 (156)
T ss_dssp CCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence 467889999999999998 78899998743 3 59999999999999999999999999999999999999
Q ss_pred ------CCce---ecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhC
Q 032515 71 ------LGRI---CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 120 (139)
Q Consensus 71 ------~G~v---cl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~ 120 (139)
+|+| ||++|. +|+|++++++||.+|++||.+|++++|+|++||.+|.+|
T Consensus 99 HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 99 MSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred cCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 8999 888887 599999999999999999999999999999999999775
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=2e-37 Score=213.51 Aligned_cols=116 Identities=22% Similarity=0.387 Sum_probs=104.2
Q ss_pred CCCCchHHHHHHHHHHHhcC-CCCCeEEeeCC-C--CccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------
Q 032515 1 MANSNLPRRIIKETQRLLSE-PAPGISASPSE-D--NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------ 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~-~~~g~~~~~~~-~--~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------ 70 (139)
||..++.+||++|+++|+++ ++.|+++.+.+ + |+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 88889999999999999998 78899998843 3 59999999999999999999999999999999999998
Q ss_pred --------C-Cce--ecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032515 71 --------L-GRI--CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHW 117 (139)
Q Consensus 71 --------~-G~v--cl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~ 117 (139)
+ |+| ||+++. +|+|++|+++||.+|+++|.+||+++|+|++||.+|
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 3 999 999886 899999999999999999999999999999988654
No 45
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5e-36 Score=203.38 Aligned_cols=104 Identities=32% Similarity=0.613 Sum_probs=92.5
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
+.+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 3577999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 107 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~ 107 (139)
+|+||+++|.++|+|++|+++||.+|++||.+|+.+.
T Consensus 85 ~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 85 YSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred CCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 7999999999999999999999999999999998753
No 46
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-35 Score=212.45 Aligned_cols=105 Identities=30% Similarity=0.659 Sum_probs=92.5
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC------------
Q 032515 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------ 70 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------ 70 (139)
+..+.+||++|+++|++++++||.+.++++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~~~ 91 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC 91 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCT
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCceecc
Confidence 35688999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceecccC---CCCCCccccHHHHHHHHHHHhcCCCCCC
Q 032515 71 LGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPNPDD 107 (139)
Q Consensus 71 ~G~vcl~~l---~~~W~p~~~~~~il~~i~~ll~~p~~~~ 107 (139)
+|+|||++| .++|+|++++.+||.+|+++|.+|+++.
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 699999999 6899999999999999999999999864
No 47
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=6.5e-36 Score=210.16 Aligned_cols=111 Identities=22% Similarity=0.367 Sum_probs=102.9
Q ss_pred CchHHHHHHHHHHHhcCCCCC-eEEee-CCCC--ccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 4 SNLPRRIIKETQRLLSEPAPG-ISASP-SEDN--MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g-~~~~~-~~~~--~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
.++.+||++|+++|++++++| +.+.+ +++| +++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 103 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 103 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence 568899999999999999888 77776 4554 8999999999999999999999999999999999998
Q ss_pred ------CCceecccCC--CCCCccccHHHHHHHHHHHhc-CCCCCCcccHHHH
Q 032515 71 ------LGRICLDILK--DKWSPALQIRTVLLSIQALLS-APNPDDPLSENIA 114 (139)
Q Consensus 71 ------~G~vcl~~l~--~~W~p~~~~~~il~~i~~ll~-~p~~~~p~n~~aa 114 (139)
+|+||+++|. ++|+|++|+++||.+|++||. +||+++|+|.|||
T Consensus 104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 6999999997 899999999999999999995 6999999999987
No 48
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.1e-35 Score=202.05 Aligned_cols=102 Identities=31% Similarity=0.609 Sum_probs=98.3
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------------
Q 032515 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK------------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~------------- 70 (139)
+.+.+||++|+++|+++++.|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 4678999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCceecccCCCCCCccccHHHHHHHHHHHhcCCCC
Q 032515 71 --LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 105 (139)
Q Consensus 71 --~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~ 105 (139)
+|+||+++|.++|+|++++.+||.+|++||.+|+.
T Consensus 99 ~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 99 YSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 89999999999999999999999999999999874
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-34 Score=197.71 Aligned_cols=99 Identities=36% Similarity=0.696 Sum_probs=92.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEe--eCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC--------
Q 032515 1 MANSNLPRRIIKETQRLLSEPAPGISAS--PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------- 70 (139)
Q Consensus 1 ms~~~~~~Rl~~E~~~l~~~~~~g~~~~--~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------- 70 (139)
||+. .+||++|+++|++++++|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 20 Ms~~--~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 97 (136)
T 2a7l_A 20 MASM--QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENI 97 (136)
T ss_dssp GTTS--CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCC
T ss_pred ccHH--HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 5542 3999999999999999999965 788999999999999999999999999999999999999998
Q ss_pred --------CCceecccCCCCCCccccHHHHHHHHHHHhc
Q 032515 71 --------LGRICLDILKDKWSPALQIRTVLLSIQALLS 101 (139)
Q Consensus 71 --------~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~ 101 (139)
+|+|||++|.++|+|++|+++||.+|++||.
T Consensus 98 ~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 98 PVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 8999999999999999999999999999974
No 50
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=207.65 Aligned_cols=111 Identities=22% Similarity=0.367 Sum_probs=102.6
Q ss_pred CchHHHHHHHHHHHhcCCCCC-eEEee-CCCC--ccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC---------
Q 032515 4 SNLPRRIIKETQRLLSEPAPG-ISASP-SEDN--MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK--------- 70 (139)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~g-~~~~~-~~~~--~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~--------- 70 (139)
.++.+||++|+++|+++++.| +.+.+ +++| +++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 458899999999999998888 67776 4554 9999999999999999999999999999999999998
Q ss_pred ------CCceecccCC--CCCCccccHHHHHHHHHHHhc-CCCCCCcccHHHH
Q 032515 71 ------LGRICLDILK--DKWSPALQIRTVLLSIQALLS-APNPDDPLSENIA 114 (139)
Q Consensus 71 ------~G~vcl~~l~--~~W~p~~~~~~il~~i~~ll~-~p~~~~p~n~~aa 114 (139)
+|+||+++|. ++|+|++|+++||.+|++||. .||+++|+|.|||
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 7999999997 899999999999999999997 5999999999987
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=2.9e-34 Score=206.40 Aligned_cols=126 Identities=18% Similarity=0.320 Sum_probs=111.9
Q ss_pred CCchHHHHHHHHHHHhcCC---CCCeEEeeCCCCccEEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCC
Q 032515 3 NSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGP-TQSPYEG-----------GVFKLELFLPEEYPMA 67 (139)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~---~~g~~~~~~~~~~~~w~~~i~Gp-~~t~y~g-----------g~f~~~i~fp~~YP~~ 67 (139)
+..+.+||++|+++|++++ +.|+.+.+.++|+++|+++|.|| ++|||+| |.|+|+|.||++||++
T Consensus 25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~ 104 (186)
T 1zuo_A 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD 104 (186)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCC
Confidence 3678899999999999988 68899999999999999999998 9999998 8999999999999999
Q ss_pred CCC---------------CCceecccCC-CCCCccccHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHH
Q 032515 68 APK---------------LGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 131 (139)
Q Consensus 68 pP~---------------~G~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~ 131 (139)
||+ +|.|||++|. ++|+|++++++||.+|++||.+|+... .|..++++|.+++++.
T Consensus 105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~ 176 (186)
T 1zuo_A 105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQ 176 (186)
T ss_dssp CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHH
T ss_pred CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHH
Confidence 998 5999999996 799999999999999999999986533 4555677888888887
Q ss_pred HHHHc
Q 032515 132 TRLYA 136 (139)
Q Consensus 132 ~~k~a 136 (139)
+.+.+
T Consensus 177 ~~~~~ 181 (186)
T 1zuo_A 177 SYNSI 181 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.86 E-value=2.6e-23 Score=144.91 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCC------
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGG----------VFKLELFLPEEYPMAAPK------ 70 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~------ 70 (139)
.+||++|++.|++ ++.+.++|++.|.+++.||.+|+|+|| .|+++|.||++||++||+
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 8999999999998 466778899999999999999999999 999999999999999999
Q ss_pred ---------CCceecccC-CC---CCCccccHHHHHH
Q 032515 71 ---------LGRICLDIL-KD---KWSPALQIRTVLL 94 (139)
Q Consensus 71 ---------~G~vcl~~l-~~---~W~p~~~~~~il~ 94 (139)
+|+|||++| ++ .|+|.+++.++|.
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 999999999 54 4559999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.60 E-value=3.2e-15 Score=104.63 Aligned_cols=100 Identities=25% Similarity=0.463 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCC---CCeEEeeCCCCccEEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCC----------
Q 032515 7 PRRIIKETQRLLSEPA---PGISASPSEDNMRYFNVMILGPTQSPYEGGV---FKLELFLPEEYPMAAPK---------- 70 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~---~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~---f~~~i~fp~~YP~~pP~---------- 70 (139)
.+|..+|+..+.+.-+ +...+...+|....+-+.+.|.-.++|+||. |.+.|.||.+||++||.
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 3677788887755322 2233344556666677777776668999999 88999999999998775
Q ss_pred ---------------CCceecccCCCCCCc-cccHHHHHHHHHHHhcCCCCCC
Q 032515 71 ---------------LGRICLDILKDKWSP-ALQIRTVLLSIQALLSAPNPDD 107 (139)
Q Consensus 71 ---------------~G~vcl~~l~~~W~p-~~~~~~il~~i~~ll~~p~~~~ 107 (139)
+|+||+++|. +|+| +.++.++|.+|.++|.+|+++.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 7999999994 6999 6799999999999999999975
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.48 E-value=3.7e-15 Score=101.86 Aligned_cols=74 Identities=20% Similarity=0.404 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCC-----
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGG----------VFKLELFLPEEYPMAAPK----- 70 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~----- 70 (139)
-..||..|++.|-+ +|....++-..|...+.||.||+|.|+ .|++++.||.+||.+||.
T Consensus 35 w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ 108 (168)
T 3kpa_A 35 WTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPE 108 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeeccc
Confidence 56899999999964 233233334578999999999999999 999999999999999998
Q ss_pred ----------CCceecccCCCCCCcccc
Q 032515 71 ----------LGRICLDILKDKWSPALQ 88 (139)
Q Consensus 71 ----------~G~vcl~~l~~~W~p~~~ 88 (139)
+|+|||+++ |+|.++
T Consensus 109 ldgkt~kmYr~GkICLdIh---wkPlW~ 133 (168)
T 3kpa_A 109 LEGKTVKMYRGGKICMTTH---FFPLWA 133 (168)
T ss_dssp GTTTCSSEETTTEECCCTT---HHHHHH
T ss_pred ccCcCccccCCCcEEeccc---cchhhH
Confidence 899999987 777653
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.15 E-value=4e-11 Score=82.53 Aligned_cols=68 Identities=21% Similarity=0.486 Sum_probs=60.7
Q ss_pred CCCCccEEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCC-------------------CCceecccCCCCCCc-cc
Q 032515 30 SEDNMRYFNVMILGPTQSPYEGGVFKL--ELFLPEEYPMAAPK-------------------LGRICLDILKDKWSP-AL 87 (139)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~t~y~gg~f~~--~i~fp~~YP~~pP~-------------------~G~vcl~~l~~~W~p-~~ 87 (139)
...++..|.++|. .+|+|+.|.+ .|.||++||++||. +|+||+++|.+ |++ ..
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEEEECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTC
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEEEEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCC
Confidence 3468999999997 5799999995 89999999999998 99999999965 988 77
Q ss_pred cHHHHHHHHHHHhcC
Q 032515 88 QIRTVLLSIQALLSA 102 (139)
Q Consensus 88 ~~~~il~~i~~ll~~ 102 (139)
++.+++..++++|.+
T Consensus 124 nL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 124 DLLGLIQVMIVVFGD 138 (146)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999975
No 56
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.94 E-value=0.0096 Score=39.15 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCC--CCccEEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCCC
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSE--DNMRYFNVMILGPTQSPY--EGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~--~~~~~w~~~i~Gp~~t~y--~gg~f~~~i~fp~~YP~~pP~ 70 (139)
..+...|+..|+.-=+.-+.+.... .....+.+.|..+.+..- ..-.+.+.|.+|++||..+|.
T Consensus 10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~ 77 (128)
T 2day_A 10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQ 77 (128)
T ss_dssp CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCE
T ss_pred HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCC
Confidence 3567889998875333344443221 234566666753222111 124788999999999999996
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.014 Score=38.35 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCceecccCCCCCCc
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICLDILKDKWSP 85 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~~G~vcl~~l~~~W~p 85 (139)
...+...|+..|..-=+..+.+. ++....+.+.|..-.+..-..-.+.+.|.||++||.+||. |.+ ....|-+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~---i~l--~~~~~l~ 83 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPL---YEI--FSQENLE 83 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCE---EEE--EEESSCC
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCce---EEE--EcCCCCC
Confidence 34667889999875333334332 2234667777762222122334789999999999999997 221 1123666
Q ss_pred cccHHHHHHHHHHHhc
Q 032515 86 ALQIRTVLLSIQALLS 101 (139)
Q Consensus 86 ~~~~~~il~~i~~ll~ 101 (139)
...+..+...|.....
T Consensus 84 ~~~~~~L~~~L~~~~~ 99 (128)
T 2ebm_A 84 DNDVSDILKLLALQAE 99 (128)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666655553
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.034 Score=36.96 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEeeCC------CCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC
Q 032515 8 RRIIKETQRLLSEPAPGISASPSE------DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~g~~~~~~~------~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~ 70 (139)
.+-..|+..|+.-=+..+.+.... +....+.+.|.+..+ .-..-.+.+.|.+|++||..||.
T Consensus 13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~ 80 (138)
T 2yz0_A 13 EIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPE 80 (138)
T ss_dssp HHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCE
T ss_pred HHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCe
Confidence 455778888875323233222111 134677888873222 11234788999999999999996
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.94 E-value=0.061 Score=38.00 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCceeccc-CCCCCCccc
Q 032515 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICLDI-LKDKWSPAL 87 (139)
Q Consensus 9 Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~~G~vcl~~-l~~~W~p~~ 87 (139)
+|.+|+..+-=+ .+.-.++++....+.+..- .|....++|.++.+||.+||. -.+.++. +.-.|++..
T Consensus 5 ~li~Ei~~iGW~-----~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~-~~~DlP~~~~~~w~~~s 73 (186)
T 3zqs_A 5 SLIEEIGTLGWD-----KLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPD-YFVDFPVPFCASWTPQS 73 (186)
T ss_dssp SHHHHHHHHCGG-----GEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCE-EECCCSSCCCCCCCTTC
T ss_pred HHHHHHHHhCCc-----eeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCe-eEEcCCCCcccccCCCc
Confidence 577888887211 1222356788899999843 478999999999999999995 1111111 124699999
Q ss_pred cHHHHHHHHHHHhcC
Q 032515 88 QIRTVLLSIQALLSA 102 (139)
Q Consensus 88 ~~~~il~~i~~ll~~ 102 (139)
++.+++...+..|..
T Consensus 74 sL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 74 SLISIYSQFLAAIES 88 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 999988877776643
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.32 E-value=0.26 Score=32.39 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeeCCC-----CccEEEEEEeCCCC-C-CCCCcEEEEEEEcCCCCCCCCCC
Q 032515 7 PRRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQ-S-PYEGGVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~-t-~y~gg~f~~~i~fp~~YP~~pP~ 70 (139)
..+...|+..|+.-=...+.+..... ....+.+.|. +.+ . .-..-.+.+.|.||++||..||.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~ 81 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPE 81 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCC
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCc
Confidence 45667888888753333343322111 1356667776 322 1 00124689999999999999997
No 61
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=93.88 E-value=0.01 Score=38.33 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 103 PNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 103 p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
.....|.+.+.|++|+++++.|...||.|+.-||.
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp -----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 34567999999999999999999999999966664
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.40 E-value=0.22 Score=32.53 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCC--CeEEe-eCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-CCceecccCCCCC
Q 032515 8 RRIIKETQRLLSEPAP--GISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-LGRICLDILKDKW 83 (139)
Q Consensus 8 ~Rl~~E~~~l~~~~~~--g~~~~-~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-~G~vcl~~l~~~W 83 (139)
-+...|+..|+.-=.. .+.+. ....+...+.+.|.. .+..=..-.+.+.|.+|++||..||. .-. | .|
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~-~------~~ 81 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN-S------EQ 81 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC-C------SS
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE-h------hh
Confidence 4567788888652111 23222 112234678888873 32111124789999999999999997 322 1 35
Q ss_pred CccccHHHHHHHHHHHh
Q 032515 84 SPALQIRTVLLSIQALL 100 (139)
Q Consensus 84 ~p~~~~~~il~~i~~ll 100 (139)
-+......+...|....
T Consensus 82 L~~~~~~~l~~~L~~~~ 98 (128)
T 2ebk_A 82 LTRAQCVTVKEKLLEQA 98 (128)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45455555555555554
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.17 E-value=0.6 Score=31.58 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=30.3
Q ss_pred EEEEEEEcCCCCCCCCCCCCceecccCCCCCCccccHHHHHHHHHHHhcCCCCCCcc
Q 032515 53 VFKLELFLPEEYPMAAPKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 109 (139)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~p~~~~p~ 109 (139)
.+.++|.+|.+||..+|. |.+. ..|-.......+...|...+.+-+...++
T Consensus 76 ~i~L~v~lP~~YP~~~P~---i~l~---~~~l~~~~~~~L~~~L~~~l~~~~lG~~m 126 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQ---LFGR---SSELDRHQQLLLNKGLTSYIGTFDPGELC 126 (154)
T ss_dssp EEEEEEEECSSTTSSCCE---EEEE---CSSSCHHHHHHHHHHHHHHHTTSCTTSCS
T ss_pred eEEEEEEcCCCCCCCCCc---EEEE---eCCCCHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 899999999999999986 1111 11333333445555566666543333443
No 64
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=88.39 E-value=0.52 Score=31.68 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=17.0
Q ss_pred cEEEEEEEcCCCCCCCCCC
Q 032515 52 GVFKLELFLPEEYPMAAPK 70 (139)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~ 70 (139)
-.+.+.|.+|.+||..||.
T Consensus 73 ~~l~L~v~lP~~YP~~~P~ 91 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPE 91 (152)
T ss_dssp EEEEEEEEECSSTTSSCCC
T ss_pred ceEEEEEECCCCCCCCCCe
Confidence 3688999999999999997
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=73.99 E-value=2.7 Score=19.15 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHhcCCCCCe
Q 032515 5 NLPRRIIKETQRLLSEPAPGI 25 (139)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~g~ 25 (139)
+-..||.-|+...+.+|++|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 345799999999999999874
No 66
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=50.32 E-value=27 Score=20.53 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=16.5
Q ss_pred ccEEEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 032515 34 MRYFNVMILGPTQSPYEGGVFKLELFLPEE 63 (139)
Q Consensus 34 ~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~ 63 (139)
+..|.|.=. .+|.|++.|++|..
T Consensus 9 p~dW~VsRt-------~dGdYrL~itcpkK 31 (76)
T 2rp4_A 9 AAEWNVSRT-------PDGDYRLAITCPNK 31 (76)
T ss_dssp SCCCEEECC-------TTTBEEEEEEESCH
T ss_pred Cccceeeec-------cCCceEEEEEeCcH
Confidence 456776654 36789999999873
No 67
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=40.60 E-value=19 Score=16.27 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHH
Q 032515 5 NLPRRIIKETQRL 17 (139)
Q Consensus 5 ~~~~Rl~~E~~~l 17 (139)
..++.|++|+++-
T Consensus 8 nlqkkirkelkqr 20 (26)
T 1m46_B 8 NLQKKIRKELKQR 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578899999864
No 68
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=37.58 E-value=49 Score=19.52 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=32.7
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 96 IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 96 i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
|+.|+..-++...+.+++-.+..+=-+.|...+-..+.+.|.
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555446778899999999999999999998888777663
No 69
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=36.49 E-value=1.1e+02 Score=21.77 Aligned_cols=59 Identities=20% Similarity=0.479 Sum_probs=40.0
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCC--CCceecccCC---------CCCCccccHHHHHHHHHHHhcC
Q 032515 44 PTQSPYEGGVFKLELFLPEEYPMAAPK--LGRICLDILK---------DKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 44 p~~t~y~gg~f~~~i~fp~~YP~~pP~--~G~vcl~~l~---------~~W~p~~~~~~il~~i~~ll~~ 102 (139)
|..++..++.|.+.+.+|..|-..||. +-.|-+.-.. .+|...-++..-...|...|..
T Consensus 117 p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~ 186 (227)
T 4b0y_A 117 PGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRE 186 (227)
T ss_dssp CCC--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHh
Confidence 555667788999999999999888988 5555554332 5666655666666666666653
No 70
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=34.17 E-value=46 Score=26.99 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=23.2
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 110 n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.|+.++..+||+.|.+.|++...++.
T Consensus 277 ~ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 277 LDEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 466888889999999999999888764
No 71
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=33.86 E-value=47 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.2
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 110 n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.|+.++..+||+.|.+.|++...++.
T Consensus 276 ~ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 276 LDEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 466888889999999999999888764
No 72
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=33.48 E-value=48 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.2
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 032515 110 SENIAKHWKTNEAEAVETAKEWTRLYA 136 (139)
Q Consensus 110 n~~aa~~~~~~~~~f~~~a~~~~~k~a 136 (139)
-.|+.++..+||+.|.+.|++...++.
T Consensus 281 ~ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 281 WEQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 466888889999999999999888764
No 73
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=30.68 E-value=54 Score=18.47 Aligned_cols=20 Identities=0% Similarity=0.084 Sum_probs=17.8
Q ss_pred ccHHHHHHHHhCHHHHHHHH
Q 032515 109 LSENIAKHWKTNEAEAVETA 128 (139)
Q Consensus 109 ~n~~aa~~~~~~~~~f~~~a 128 (139)
-|++.+++..+|+++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 48999999999999998865
No 74
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=29.82 E-value=42 Score=19.64 Aligned_cols=21 Identities=0% Similarity=0.093 Sum_probs=18.8
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 032515 109 LSENIAKHWKTNEAEAVETAK 129 (139)
Q Consensus 109 ~n~~aa~~~~~~~~~f~~~a~ 129 (139)
.|++.+++..+|+++|.+...
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHHc
Confidence 589999999999999998764
No 75
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=28.02 E-value=52 Score=19.04 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 107 DPLSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 107 ~p~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
..++.++++.+.+|-+...+.+-+.+.||+.
T Consensus 22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfmr 52 (70)
T 1taf_B 22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFMN 52 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999988888777777653
No 76
>3uam_A Chitin binding domain; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, protein binding; 2.00A {Burkholderia pseudomallei}
Probab=27.67 E-value=18 Score=25.93 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=6.5
Q ss_pred CCCCCcee
Q 032515 68 APKLGRIC 75 (139)
Q Consensus 68 pP~~G~vc 75 (139)
+|.+|+||
T Consensus 75 ~P~DG~Lc 82 (216)
T 3uam_A 75 PPRDGEIA 82 (216)
T ss_dssp CCCTTCTT
T ss_pred CCCCcccc
Confidence 56699999
No 77
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=26.73 E-value=20 Score=16.18 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=3.4
Q ss_pred EcCCCC
Q 032515 59 FLPEEY 64 (139)
Q Consensus 59 ~fp~~Y 64 (139)
.+|++|
T Consensus 6 tlpeny 11 (26)
T 2jrw_A 6 TLPENY 11 (26)
T ss_dssp CCSSSS
T ss_pred ccchhh
Confidence 456665
No 78
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=24.26 E-value=61 Score=17.15 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCCCc-ccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 032515 93 LLSIQALLSAPNPDDP-LSENIAKHWKTNEAEAVETAKEWTRLYAS 137 (139)
Q Consensus 93 l~~i~~ll~~p~~~~p-~n~~aa~~~~~~~~~f~~~a~~~~~k~a~ 137 (139)
|..|..-|.+|+ +| .+-.+-..++.||......++.-+.+|++
T Consensus 3 LqqLl~tlksp~--sp~qqqqvl~ILksnPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 3 LQDLLRTLKSPS--SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp HHHHHHTCCSCC--CHHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcc
Confidence 334444455555 33 45567778899999888888888888765
No 79
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=24.09 E-value=1.2e+02 Score=21.36 Aligned_cols=59 Identities=20% Similarity=0.479 Sum_probs=41.7
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCC--CCceecccCC---------CCCCccccHHHHHHHHHHHhcC
Q 032515 44 PTQSPYEGGVFKLELFLPEEYPMAAPK--LGRICLDILK---------DKWSPALQIRTVLLSIQALLSA 102 (139)
Q Consensus 44 p~~t~y~gg~f~~~i~fp~~YP~~pP~--~G~vcl~~l~---------~~W~p~~~~~~il~~i~~ll~~ 102 (139)
|..++..++.|.+.+.+|..|-..||. +-.|-+.-.. .+|...-++..-...|...|..
T Consensus 98 p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~ 167 (212)
T 3r8j_A 98 PGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRE 167 (212)
T ss_dssp CTTSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHh
Confidence 555677789999999999999878888 5555554332 5666666667666777766654
No 80
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=24.05 E-value=1.1e+02 Score=24.80 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCceecc
Q 032515 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICLD 77 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~~G~vcl~ 77 (139)
|..--.+++.+|.....+++...-.+.++-...+.|.|| +-+|.-..|.+.|.|-. |-+++..+.||+.
T Consensus 20 a~q~a~~dl~eL~~kL~S~lv~Y~~~G~~~di~i~lkgP-dkIYGfSAFPVqi~i~~--~~~~~~~~~vhIt 88 (526)
T 2wb7_A 20 ATQAAHKAAAELTAKLRSDFVEYGNGGTAGQVLIHIYGP-GLIYGFSAFPVQIRLEI--PNQPVPFNKVHIT 88 (526)
T ss_dssp CHHHHHHHHHHHHHHTCCCEEEEEEBCSCSSSEEEEEEE-SCEETTCEEEEEEEEEE--CCCSSTTCCEEEE
T ss_pred hhHHHHHHHHHHHHHhhhheEEeccCCcccceEEEEEcC-ccccccccCcEEEEEec--CCCCcccCceEEE
Confidence 344456677777666666654444555666668999986 55898899999999977 6665555555553
No 81
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.59 E-value=63 Score=14.76 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhc
Q 032515 6 LPRRIIKETQRLLS 19 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~ 19 (139)
-.|||.+|.-.|..
T Consensus 9 nvkrlekevgkleg 22 (28)
T 4dac_A 9 NVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhh
Confidence 46899999988753
No 82
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=23.05 E-value=1.3e+02 Score=23.38 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=49.4
Q ss_pred HHHhcCCCCCeEEeeCCCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC-------CCceecc----cCCCCC
Q 032515 15 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK-------LGRICLD----ILKDKW 83 (139)
Q Consensus 15 ~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~~pP~-------~G~vcl~----~l~~~W 83 (139)
+++...+.+|..+....++-....+++. -+|.+.++++.+|. ||.-.-. --..|-. .+.++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3k1l_B 8 ERLLCQKYPGLAAELQPSGACIIRGVLG------SEDTWRRLKLYLPH-HPALHGFQLYVQESLEYKLYTSANLKLQDDW 80 (381)
T ss_dssp HHHHHHHCTTEEEEECTTSCEEEEEEEE------ETTEEEEEEEEETB-TTBCTTCEEEEECSSSEEEECTTTSCCCTTC
T ss_pred HHHHHHhCCceEEEecCCCcEEEEEEEE------ecCceEEEEEccCC-CcccccchhhhhhhheeeEeccCCceeccch
Confidence 3333455789999998988887777776 36889999999975 6643332 0111110 113455
Q ss_pred CccccHHHHHHHHHHHhc
Q 032515 84 SPALQIRTVLLSIQALLS 101 (139)
Q Consensus 84 ~p~~~~~~il~~i~~ll~ 101 (139)
. +.++|..+-.++-
T Consensus 81 ~----~~~~~~~~~~~~~ 94 (381)
T 3k1l_B 81 L----LEDFLDHLPKILP 94 (381)
T ss_dssp C----HHHHHHHHHHHCC
T ss_pred h----HHHHHHhHHHhCC
Confidence 4 8888888877775
No 83
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=22.84 E-value=1.7e+02 Score=20.05 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCCccEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC
Q 032515 31 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66 (139)
Q Consensus 31 ~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~YP~ 66 (139)
++..+.|.+.+.|+.+.-...-+=++.+.+.+.||.
T Consensus 29 ~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n 64 (175)
T 3rls_A 29 AEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN 64 (175)
T ss_dssp TTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS
T ss_pred CCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC
Confidence 356789999999987654444466788888999984
No 84
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=22.46 E-value=61 Score=16.58 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHhc
Q 032515 6 LPRRIIKETQRLLS 19 (139)
Q Consensus 6 ~~~Rl~~E~~~l~~ 19 (139)
-.+||..|++.+++
T Consensus 29 ~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 29 KIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999998763
Done!