Query 032516
Match_columns 139
No_of_seqs 121 out of 1137
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.5E-37 1.4E-41 201.5 12.5 122 4-126 7-130 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 5.4E-35 1.2E-39 191.8 13.4 135 3-138 2-150 (200)
3 KOG0098 GTPase Rab2, small G p 100.0 2.3E-33 4.9E-38 183.3 11.8 124 1-125 1-126 (216)
4 KOG0078 GTP-binding protein SE 100.0 3.5E-33 7.6E-38 186.0 12.7 134 4-138 10-157 (207)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.2E-33 1.1E-37 182.8 12.0 123 4-127 20-145 (221)
6 cd04133 Rop_like Rop subfamily 100.0 4.2E-32 9.1E-37 181.4 16.0 119 7-125 2-120 (176)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.3E-32 7.1E-37 182.8 15.5 122 3-124 2-123 (182)
8 cd01875 RhoG RhoG subfamily. 100.0 5.3E-32 1.2E-36 183.1 15.6 121 5-125 2-122 (191)
9 cd04131 Rnd Rnd subfamily. Th 100.0 6.7E-32 1.5E-36 180.8 15.4 119 6-124 1-119 (178)
10 KOG0080 GTPase Rab18, small G 100.0 1.5E-32 3.2E-37 175.8 10.7 119 5-124 10-131 (209)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.1E-32 1.5E-36 179.4 12.0 122 4-126 12-135 (222)
12 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.5E-31 7.5E-36 176.9 15.5 119 7-125 2-120 (175)
13 cd04121 Rab40 Rab40 subfamily. 100.0 4.8E-31 1E-35 178.1 15.3 121 4-125 4-125 (189)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.2E-31 1.1E-35 182.5 15.2 120 5-124 12-131 (232)
15 cd04120 Rab12 Rab12 subfamily. 100.0 7.2E-31 1.6E-35 178.8 14.9 117 7-124 1-119 (202)
16 KOG0093 GTPase Rab3, small G p 100.0 1.1E-31 2.4E-36 169.5 9.7 131 6-137 21-165 (193)
17 KOG0079 GTP-binding protein H- 100.0 5.5E-32 1.2E-36 171.1 8.3 120 5-125 7-127 (198)
18 KOG0394 Ras-related GTPase [Ge 100.0 8.8E-32 1.9E-36 175.5 9.3 121 4-125 7-133 (210)
19 cd01871 Rac1_like Rac1-like su 100.0 1.6E-30 3.4E-35 173.6 15.5 118 7-124 2-119 (174)
20 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.4E-30 3.1E-35 179.4 14.8 119 6-124 1-119 (222)
21 cd04134 Rho3 Rho3 subfamily. 100.0 4.4E-30 9.6E-35 173.4 15.5 120 7-126 1-120 (189)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.9E-30 8.4E-35 171.3 14.4 120 5-125 1-122 (172)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.1E-29 2.5E-34 167.9 14.5 120 6-126 2-123 (166)
24 PTZ00369 Ras-like protein; Pro 100.0 1.5E-29 3.3E-34 170.7 15.1 121 4-125 3-125 (189)
25 cd04136 Rap_like Rap-like subf 100.0 1.4E-29 3.1E-34 166.4 14.6 117 7-124 2-120 (163)
26 cd04132 Rho4_like Rho4-like su 100.0 2.2E-29 4.8E-34 169.4 14.7 119 7-125 1-120 (187)
27 PLN03071 GTP-binding nuclear p 100.0 2.5E-29 5.4E-34 173.3 15.1 120 4-124 11-131 (219)
28 smart00174 RHO Rho (Ras homolo 100.0 3.3E-29 7.2E-34 166.6 15.0 116 9-124 1-116 (174)
29 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.9E-29 1.1E-33 166.0 15.5 118 7-124 1-118 (173)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 3.2E-29 7E-34 165.3 14.3 117 7-124 2-120 (164)
31 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.5E-29 5.4E-34 171.1 14.1 118 7-125 1-144 (202)
32 cd04176 Rap2 Rap2 subgroup. T 100.0 3.9E-29 8.5E-34 164.6 14.6 118 6-124 1-120 (163)
33 cd01865 Rab3 Rab3 subfamily. 100.0 4.6E-29 1E-33 164.9 14.8 119 7-126 2-122 (165)
34 cd04124 RabL2 RabL2 subfamily. 100.0 5.5E-29 1.2E-33 164.0 15.1 116 7-123 1-117 (161)
35 cd01867 Rab8_Rab10_Rab13_like 100.0 4.7E-29 1E-33 165.1 14.6 121 5-126 2-124 (167)
36 cd04128 Spg1 Spg1p. Spg1p (se 100.0 6.7E-29 1.4E-33 166.8 14.7 115 7-123 1-117 (182)
37 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 7.7E-29 1.7E-33 168.8 15.0 116 7-123 1-123 (201)
38 KOG0086 GTPase Rab4, small G p 100.0 1.1E-29 2.3E-34 161.7 9.8 122 5-127 8-131 (214)
39 cd04117 Rab15 Rab15 subfamily. 100.0 9.6E-29 2.1E-33 162.9 14.7 119 7-126 1-121 (161)
40 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.6E-29 1.9E-33 162.3 14.4 117 7-124 2-120 (162)
41 cd00877 Ran Ran (Ras-related n 100.0 1.3E-28 2.8E-33 163.1 15.3 116 7-123 1-117 (166)
42 cd04140 ARHI_like ARHI subfami 100.0 1.1E-28 2.3E-33 163.1 14.7 117 7-124 2-122 (165)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.1E-28 2.3E-33 163.0 14.7 120 6-126 2-123 (166)
44 cd04135 Tc10 TC10 subfamily. 100.0 1.8E-28 3.9E-33 163.0 15.8 119 7-125 1-119 (174)
45 KOG0095 GTPase Rab30, small G 100.0 1.3E-29 2.8E-34 160.8 9.5 123 4-127 5-129 (213)
46 cd04144 Ras2 Ras2 subfamily. 100.0 5.1E-29 1.1E-33 168.3 13.2 116 8-124 1-120 (190)
47 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-28 2.9E-33 167.4 15.2 121 4-125 4-125 (199)
48 cd04106 Rab23_lke Rab23-like s 100.0 1.3E-28 2.9E-33 161.7 14.2 117 7-124 1-120 (162)
49 cd01864 Rab19 Rab19 subfamily. 100.0 1.6E-28 3.4E-33 162.2 14.5 121 5-126 2-124 (165)
50 cd04127 Rab27A Rab27a subfamil 100.0 1.3E-28 2.9E-33 164.6 14.3 120 5-125 3-135 (180)
51 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.5E-28 3.1E-33 163.5 14.4 117 8-125 2-121 (170)
52 smart00173 RAS Ras subfamily o 100.0 1.8E-28 3.8E-33 161.6 14.1 118 7-125 1-120 (164)
53 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.8E-28 6.1E-33 160.4 14.7 119 6-125 2-122 (164)
54 cd01868 Rab11_like Rab11-like. 100.0 2.9E-28 6.2E-33 160.8 14.5 120 5-125 2-123 (165)
55 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.3E-28 7.1E-33 161.6 14.6 121 5-126 1-125 (170)
56 cd01870 RhoA_like RhoA-like su 100.0 5E-28 1.1E-32 161.0 15.5 119 6-124 1-119 (175)
57 PF00071 Ras: Ras family; Int 100.0 2.2E-28 4.7E-33 160.8 13.5 118 8-126 1-120 (162)
58 PLN00023 GTP-binding protein; 100.0 3.2E-28 6.9E-33 173.9 15.4 122 3-125 18-166 (334)
59 cd04116 Rab9 Rab9 subfamily. 100.0 4.2E-28 9.1E-33 160.8 15.0 120 3-123 2-127 (170)
60 cd04113 Rab4 Rab4 subfamily. 100.0 3.6E-28 7.7E-33 159.7 14.2 118 7-125 1-120 (161)
61 cd04118 Rab24 Rab24 subfamily. 100.0 6.9E-28 1.5E-32 162.9 15.5 117 7-124 1-119 (193)
62 cd04119 RJL RJL (RabJ-Like) su 100.0 3.7E-28 8.1E-33 160.1 13.7 116 7-123 1-123 (168)
63 cd00157 Rho Rho (Ras homology) 100.0 1E-27 2.2E-32 158.7 15.4 121 7-127 1-121 (171)
64 cd04125 RabA_like RabA-like su 100.0 9.7E-28 2.1E-32 161.7 14.9 118 7-125 1-120 (188)
65 cd01866 Rab2 Rab2 subfamily. 100.0 1E-27 2.2E-32 158.9 14.7 119 5-124 3-123 (168)
66 smart00176 RAN Ran (Ras-relate 100.0 5.6E-28 1.2E-32 164.4 13.5 111 12-123 1-112 (200)
67 cd04109 Rab28 Rab28 subfamily. 100.0 8.3E-28 1.8E-32 165.3 14.3 118 7-125 1-124 (215)
68 PLN03110 Rab GTPase; Provision 100.0 1.1E-27 2.4E-32 164.9 14.9 121 4-125 10-132 (216)
69 cd04143 Rhes_like Rhes_like su 100.0 7.6E-28 1.6E-32 168.5 14.3 117 7-124 1-127 (247)
70 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-27 3.3E-32 158.4 15.0 120 4-125 2-123 (169)
71 cd01861 Rab6 Rab6 subfamily. 100.0 2.2E-27 4.7E-32 155.8 14.3 117 7-124 1-119 (161)
72 cd04146 RERG_RasL11_like RERG/ 100.0 1.2E-27 2.5E-32 158.0 13.0 117 8-125 1-121 (165)
73 cd04177 RSR1 RSR1 subgroup. R 100.0 2.9E-27 6.2E-32 156.7 14.8 119 7-126 2-122 (168)
74 cd04111 Rab39 Rab39 subfamily. 100.0 2.9E-27 6.3E-32 162.2 14.5 119 6-125 2-124 (211)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.2E-27 6.9E-32 155.6 14.2 118 7-125 1-122 (164)
76 cd04112 Rab26 Rab26 subfamily. 100.0 2.9E-27 6.2E-32 159.9 14.3 117 7-124 1-120 (191)
77 PLN03108 Rab family protein; P 100.0 4.1E-27 8.9E-32 161.4 15.2 124 1-125 1-126 (210)
78 cd01893 Miro1 Miro1 subfamily. 100.0 3.9E-27 8.4E-32 155.9 14.3 119 7-126 1-119 (166)
79 KOG0088 GTPase Rab21, small G 100.0 2.8E-28 6E-33 156.0 7.6 123 4-127 11-135 (218)
80 smart00175 RAB Rab subfamily o 100.0 6E-27 1.3E-31 154.0 14.2 117 7-124 1-119 (164)
81 cd04103 Centaurin_gamma Centau 100.0 7.1E-27 1.5E-31 153.7 14.4 110 7-123 1-112 (158)
82 cd01860 Rab5_related Rab5-rela 100.0 6.4E-27 1.4E-31 153.9 14.2 118 6-124 1-120 (163)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 1E-26 2.3E-31 157.7 15.3 117 6-124 2-134 (195)
84 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.2E-27 9.1E-32 155.6 12.3 114 9-126 2-115 (164)
85 cd04123 Rab21 Rab21 subfamily. 99.9 1.3E-26 2.8E-31 151.9 14.4 119 7-126 1-121 (162)
86 cd01863 Rab18 Rab18 subfamily. 99.9 1.6E-26 3.4E-31 151.8 14.8 116 7-123 1-119 (161)
87 cd04142 RRP22 RRP22 subfamily. 99.9 1.6E-26 3.5E-31 157.1 14.9 117 7-124 1-130 (198)
88 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-26 2.3E-31 160.1 14.2 113 7-124 1-114 (220)
89 KOG0395 Ras-related GTPase [Ge 99.9 5.1E-27 1.1E-31 158.9 11.7 120 5-125 2-123 (196)
90 KOG0081 GTPase Rab27, small G 99.9 4.2E-29 9.1E-34 159.8 1.4 132 5-137 8-163 (219)
91 cd01862 Rab7 Rab7 subfamily. 99.9 1.9E-26 4.1E-31 152.8 14.1 117 7-124 1-123 (172)
92 KOG0393 Ras-related small GTPa 99.9 1.9E-27 4.2E-32 158.8 9.2 120 4-123 2-122 (198)
93 cd04149 Arf6 Arf6 subfamily. 99.9 6.8E-27 1.5E-31 155.2 11.7 117 4-124 7-124 (168)
94 smart00177 ARF ARF-like small 99.9 1.1E-26 2.3E-31 155.2 12.3 118 4-125 11-129 (175)
95 cd04129 Rho2 Rho2 subfamily. 99.9 5.4E-26 1.2E-30 153.2 15.4 119 6-124 1-119 (187)
96 PLN00223 ADP-ribosylation fact 99.9 1.1E-26 2.5E-31 155.9 11.9 118 4-125 15-133 (181)
97 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.8E-26 3.8E-31 151.9 11.9 115 7-125 1-116 (159)
98 cd04114 Rab30 Rab30 subfamily. 99.9 9.3E-26 2E-30 149.2 15.4 125 1-126 1-128 (169)
99 PLN03118 Rab family protein; P 99.9 8E-26 1.7E-30 155.0 15.4 120 5-125 13-135 (211)
100 PTZ00132 GTP-binding nuclear p 99.9 9.4E-26 2E-30 155.0 15.6 122 2-124 5-127 (215)
101 cd04139 RalA_RalB RalA/RalB su 99.9 7.3E-26 1.6E-30 148.7 14.1 117 7-124 1-119 (164)
102 PTZ00133 ADP-ribosylation fact 99.9 3.1E-26 6.7E-31 153.9 12.1 118 4-125 15-133 (182)
103 cd04148 RGK RGK subfamily. Th 99.9 1.1E-25 2.3E-30 155.5 14.4 116 7-125 1-121 (221)
104 cd00154 Rab Rab family. Rab G 99.9 1.8E-25 3.8E-30 145.5 13.9 116 7-123 1-118 (159)
105 cd00876 Ras Ras family. The R 99.9 1.3E-25 2.8E-30 146.8 13.2 116 8-124 1-118 (160)
106 cd04147 Ras_dva Ras-dva subfam 99.9 1.4E-25 3E-30 152.4 13.6 116 8-124 1-118 (198)
107 PF08477 Miro: Miro-like prote 99.9 1.8E-25 4E-30 140.2 12.5 114 8-121 1-119 (119)
108 KOG0091 GTPase Rab39, small G 99.9 2.4E-26 5.3E-31 147.7 8.4 122 5-127 7-133 (213)
109 cd04161 Arl2l1_Arl13_like Arl2 99.9 1E-25 2.2E-30 149.4 11.5 114 8-126 1-116 (167)
110 cd04137 RheB Rheb (Ras Homolog 99.9 2.6E-25 5.6E-30 148.7 13.4 117 7-124 2-120 (180)
111 cd04158 ARD1 ARD1 subfamily. 99.9 2.1E-25 4.5E-30 148.0 12.0 113 8-125 1-115 (169)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.9E-25 1.3E-29 147.7 13.1 117 6-124 3-123 (183)
113 KOG0083 GTPase Rab26/Rab37, sm 99.9 2.3E-27 5E-32 148.0 0.6 126 10-136 1-141 (192)
114 cd04157 Arl6 Arl6 subfamily. 99.9 5.4E-25 1.2E-29 144.5 11.1 114 8-125 1-119 (162)
115 KOG0097 GTPase Rab14, small G 99.9 2.3E-25 5.1E-30 140.4 8.9 122 4-126 9-132 (215)
116 cd04154 Arl2 Arl2 subfamily. 99.9 1.6E-24 3.5E-29 144.2 13.2 116 4-124 12-129 (173)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.2E-24 2.5E-29 145.1 12.0 117 4-124 13-130 (174)
118 cd04151 Arl1 Arl1 subfamily. 99.9 2E-24 4.2E-29 141.7 11.5 114 8-125 1-115 (158)
119 COG1100 GTPase SAR1 and relate 99.9 2.7E-24 5.9E-29 147.8 11.9 123 5-127 4-128 (219)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.7E-24 1.7E-28 138.9 12.5 113 8-124 1-115 (160)
121 KOG4252 GTP-binding protein [S 99.9 1.4E-25 3.1E-30 146.2 1.8 122 4-126 18-140 (246)
122 smart00178 SAR Sar1p-like memb 99.9 1.7E-23 3.7E-28 140.7 11.9 116 4-124 15-132 (184)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.9E-23 4.1E-28 136.8 11.6 112 8-124 1-114 (158)
124 PF00025 Arf: ADP-ribosylation 99.9 2.5E-23 5.3E-28 139.0 11.5 119 3-125 11-130 (175)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4E-23 8.6E-28 136.4 12.3 114 8-125 1-122 (167)
126 cd04159 Arl10_like Arl10-like 99.9 6E-23 1.3E-27 133.6 12.8 115 8-125 1-116 (159)
127 cd00879 Sar1 Sar1 subfamily. 99.9 1E-22 2.2E-27 137.3 13.2 115 4-123 17-133 (190)
128 cd04105 SR_beta Signal recogni 99.9 6.3E-23 1.4E-27 140.0 11.7 120 8-127 2-126 (203)
129 KOG0073 GTP-binding ADP-ribosy 99.9 3E-22 6.5E-27 128.7 11.2 116 4-123 14-130 (185)
130 KOG0070 GTP-binding ADP-ribosy 99.9 1.1E-22 2.3E-27 133.3 8.6 121 3-127 14-135 (181)
131 TIGR00231 small_GTP small GTP- 99.9 1.4E-21 2.9E-26 126.7 12.8 120 6-125 1-123 (161)
132 cd04155 Arl3 Arl3 subfamily. 99.9 4.8E-21 1E-25 127.1 12.1 118 4-125 12-130 (173)
133 cd01890 LepA LepA subfamily. 99.9 2.6E-21 5.7E-26 129.0 10.7 114 8-125 2-134 (179)
134 cd01891 TypA_BipA TypA (tyrosi 99.9 2.7E-21 5.7E-26 131.0 9.8 116 6-125 2-132 (194)
135 cd01898 Obg Obg subfamily. Th 99.9 6.5E-21 1.4E-25 126.0 10.6 117 8-126 2-130 (170)
136 KOG0075 GTP-binding ADP-ribosy 99.9 4.9E-22 1.1E-26 125.8 4.3 117 6-125 20-137 (186)
137 cd01897 NOG NOG1 is a nucleola 99.9 2.1E-20 4.6E-25 123.4 12.2 117 7-126 1-129 (168)
138 KOG0071 GTP-binding ADP-ribosy 99.8 1.4E-20 3.1E-25 118.3 9.9 120 4-127 15-135 (180)
139 cd01878 HflX HflX subfamily. 99.8 2.2E-20 4.7E-25 127.3 10.7 119 4-126 39-169 (204)
140 cd04171 SelB SelB subfamily. 99.8 3.9E-20 8.4E-25 121.4 11.0 110 8-125 2-119 (164)
141 cd00882 Ras_like_GTPase Ras-li 99.8 8E-20 1.7E-24 117.2 11.9 115 11-126 1-118 (157)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 8.2E-20 1.8E-24 120.4 11.4 114 8-125 2-117 (168)
143 PTZ00099 rab6; Provisional 99.8 1.2E-19 2.5E-24 121.4 11.6 96 29-125 3-100 (176)
144 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.3E-19 4.9E-24 134.7 12.8 114 5-125 202-325 (442)
145 TIGR03156 GTP_HflX GTP-binding 99.8 1.3E-19 2.8E-24 132.5 10.7 117 5-124 188-315 (351)
146 PRK15494 era GTPase Era; Provi 99.8 2.7E-19 5.9E-24 130.5 10.9 116 3-124 49-174 (339)
147 PRK03003 GTP-binding protein D 99.8 1.5E-19 3.3E-24 137.0 9.9 114 5-124 37-160 (472)
148 TIGR02528 EutP ethanolamine ut 99.8 4.3E-20 9.3E-25 119.0 5.8 96 8-124 2-102 (142)
149 KOG1673 Ras GTPases [General f 99.8 2.5E-19 5.3E-24 114.6 7.9 117 6-123 20-137 (205)
150 TIGR01393 lepA GTP-binding pro 99.8 2.2E-19 4.7E-24 138.9 8.8 118 5-126 2-138 (595)
151 PRK12299 obgE GTPase CgtA; Rev 99.8 9.1E-19 2E-23 127.3 11.1 118 7-126 159-287 (335)
152 PRK05291 trmE tRNA modificatio 99.8 8.8E-19 1.9E-23 131.9 11.3 114 5-126 214-337 (449)
153 PRK03003 GTP-binding protein D 99.8 9.6E-19 2.1E-23 132.6 11.5 114 5-124 210-336 (472)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.3E-18 2.9E-23 113.1 10.7 112 7-126 2-123 (157)
155 PRK04213 GTP-binding protein; 99.8 1.2E-19 2.6E-24 123.3 6.0 116 3-125 6-145 (201)
156 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 9.9E-19 2.1E-23 115.1 9.7 120 6-126 10-130 (216)
157 TIGR03598 GTPase_YsxC ribosome 99.8 9.5E-19 2.1E-23 117.1 9.7 117 2-125 14-144 (179)
158 cd01879 FeoB Ferrous iron tran 99.8 2.7E-18 5.9E-23 112.0 10.9 108 11-126 1-117 (158)
159 KOG0074 GTP-binding ADP-ribosy 99.8 3E-18 6.4E-23 108.1 10.1 121 4-127 15-136 (185)
160 cd04168 TetM_like Tet(M)-like 99.8 1.2E-18 2.7E-23 121.4 9.3 115 8-126 1-132 (237)
161 cd01881 Obg_like The Obg-like 99.8 2.6E-18 5.7E-23 113.9 10.4 113 11-125 1-135 (176)
162 KOG1707 Predicted Ras related/ 99.8 1E-18 2.2E-23 131.3 9.2 123 4-127 7-132 (625)
163 TIGR00436 era GTP-binding prot 99.8 2.2E-18 4.8E-23 122.3 10.3 110 8-124 2-121 (270)
164 KOG3883 Ras family small GTPas 99.8 8.8E-18 1.9E-22 107.3 11.6 120 5-125 8-133 (198)
165 cd01894 EngA1 EngA1 subfamily. 99.8 3E-18 6.5E-23 111.5 9.4 112 10-127 1-122 (157)
166 TIGR00487 IF-2 translation ini 99.8 6.9E-18 1.5E-22 130.2 12.9 118 4-126 85-203 (587)
167 cd04167 Snu114p Snu114p subfam 99.8 1.9E-18 4E-23 118.7 8.8 112 8-123 2-136 (213)
168 PF09439 SRPRB: Signal recogni 99.8 5.5E-19 1.2E-23 117.6 5.6 121 5-127 2-129 (181)
169 PRK00093 GTP-binding protein D 99.8 4.1E-18 8.9E-23 128.0 10.8 112 7-124 2-123 (435)
170 cd00881 GTP_translation_factor 99.8 6.4E-18 1.4E-22 113.2 10.1 113 8-124 1-128 (189)
171 cd04169 RF3 RF3 subfamily. Pe 99.8 4.9E-18 1.1E-22 120.2 9.9 117 6-126 2-139 (267)
172 PRK11058 GTPase HflX; Provisio 99.8 7.8E-18 1.7E-22 125.8 11.1 116 7-124 198-323 (426)
173 TIGR02729 Obg_CgtA Obg family 99.8 8.9E-18 1.9E-22 121.9 10.9 118 6-125 157-288 (329)
174 cd04163 Era Era subfamily. Er 99.8 1.2E-17 2.6E-22 109.2 10.5 115 5-123 2-124 (168)
175 TIGR03594 GTPase_EngA ribosome 99.8 2.6E-17 5.6E-22 123.5 13.3 113 5-123 171-296 (429)
176 COG2229 Predicted GTPase [Gene 99.8 1.8E-17 3.8E-22 108.8 10.5 119 4-127 8-138 (187)
177 cd01895 EngA2 EngA2 subfamily. 99.8 2.2E-17 4.7E-22 108.9 11.1 114 6-125 2-128 (174)
178 PRK05433 GTP-binding protein L 99.8 4.5E-18 9.8E-23 131.7 8.9 122 1-126 2-142 (600)
179 CHL00189 infB translation init 99.7 1.5E-17 3.3E-22 130.4 11.1 119 4-126 242-363 (742)
180 PRK00454 engB GTP-binding prot 99.7 1.9E-17 4.1E-22 111.9 10.0 117 3-125 21-150 (196)
181 TIGR03594 GTPase_EngA ribosome 99.7 8.3E-18 1.8E-22 126.1 8.9 113 8-126 1-123 (429)
182 PRK05306 infB translation init 99.7 4.2E-17 9.2E-22 128.9 12.9 117 4-126 288-405 (787)
183 KOG0076 GTP-binding ADP-ribosy 99.7 3.3E-18 7.1E-23 111.2 4.9 123 2-127 13-143 (197)
184 PRK10218 GTP-binding protein; 99.7 6.4E-17 1.4E-21 125.2 12.4 120 4-127 3-137 (607)
185 PRK09518 bifunctional cytidyla 99.7 2E-17 4.3E-22 130.7 9.8 116 4-125 273-398 (712)
186 cd01885 EF2 EF2 (for archaea a 99.7 1.6E-17 3.6E-22 114.5 7.9 112 8-123 2-138 (222)
187 cd01889 SelB_euk SelB subfamil 99.7 2.5E-17 5.5E-22 111.4 8.7 114 7-124 1-134 (192)
188 PRK09518 bifunctional cytidyla 99.7 4.6E-17 9.9E-22 128.6 11.1 116 4-125 448-576 (712)
189 PRK12297 obgE GTPase CgtA; Rev 99.7 7.5E-17 1.6E-21 120.2 11.6 116 7-124 159-288 (424)
190 PRK00089 era GTPase Era; Revie 99.7 8.5E-17 1.8E-21 115.3 10.9 114 5-123 4-126 (292)
191 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.8E-17 1E-21 112.5 8.9 116 8-125 1-126 (232)
192 TIGR00491 aIF-2 translation in 99.7 1.1E-16 2.4E-21 123.6 11.2 112 5-123 3-134 (590)
193 PRK12317 elongation factor 1-a 99.7 1E-16 2.2E-21 120.2 10.4 123 1-124 1-153 (425)
194 cd01850 CDC_Septin CDC/Septin. 99.7 2.7E-16 5.9E-21 111.8 11.9 116 5-124 3-157 (276)
195 TIGR00475 selB selenocysteine- 99.7 2.6E-16 5.6E-21 121.8 11.3 111 7-126 1-119 (581)
196 PF02421 FeoB_N: Ferrous iron 99.7 2E-16 4.3E-21 103.3 9.1 113 7-127 1-122 (156)
197 cd04104 p47_IIGP_like p47 (47- 99.7 1.9E-16 4.1E-21 107.6 9.1 113 6-124 1-121 (197)
198 TIGR01394 TypA_BipA GTP-bindin 99.7 2.5E-16 5.3E-21 121.9 10.7 116 7-126 2-132 (594)
199 PRK00741 prfC peptide chain re 99.7 1.6E-16 3.4E-21 121.5 9.5 120 4-127 8-148 (526)
200 COG1159 Era GTPase [General fu 99.7 2E-16 4.4E-21 111.2 9.1 120 3-127 3-131 (298)
201 cd00880 Era_like Era (E. coli 99.7 4.1E-16 8.9E-21 100.9 10.0 111 11-126 1-120 (163)
202 KOG4423 GTP-binding protein-li 99.7 2.2E-19 4.7E-24 118.0 -5.7 119 4-123 23-148 (229)
203 TIGR00483 EF-1_alpha translati 99.7 2.2E-16 4.7E-21 118.5 9.5 120 3-124 4-155 (426)
204 PRK12298 obgE GTPase CgtA; Rev 99.7 3.9E-16 8.5E-21 115.6 10.7 117 7-125 160-290 (390)
205 PRK00093 GTP-binding protein D 99.7 6E-16 1.3E-20 116.4 11.7 113 5-123 172-297 (435)
206 TIGR00503 prfC peptide chain r 99.7 4.4E-16 9.6E-21 119.1 10.7 119 4-126 9-148 (527)
207 cd01886 EF-G Elongation factor 99.7 4.7E-16 1E-20 110.3 10.1 115 8-126 1-132 (270)
208 PRK13351 elongation factor G; 99.7 1.6E-16 3.5E-21 125.3 8.5 120 3-126 5-141 (687)
209 PRK04004 translation initiatio 99.7 7.7E-16 1.7E-20 119.1 12.0 113 4-123 4-136 (586)
210 PRK15467 ethanolamine utilizat 99.7 1.5E-16 3.4E-21 104.6 6.5 101 8-126 3-107 (158)
211 cd04166 CysN_ATPS CysN_ATPS su 99.7 4.2E-16 9.1E-21 106.7 8.7 114 8-124 1-144 (208)
212 COG1160 Predicted GTPases [Gen 99.7 1.5E-16 3.2E-21 117.3 6.4 115 7-127 4-129 (444)
213 cd04170 EF-G_bact Elongation f 99.7 7.4E-16 1.6E-20 109.3 9.5 115 8-126 1-132 (268)
214 PRK12296 obgE GTPase CgtA; Rev 99.7 7.3E-16 1.6E-20 116.5 9.9 118 6-126 159-300 (500)
215 PF00009 GTP_EFTU: Elongation 99.7 8.7E-16 1.9E-20 103.6 9.3 115 5-123 2-135 (188)
216 PF01926 MMR_HSR1: 50S ribosom 99.7 1.5E-15 3.2E-20 94.9 9.4 105 8-119 1-116 (116)
217 PRK09554 feoB ferrous iron tra 99.6 4.5E-15 9.9E-20 117.7 13.1 114 5-125 2-127 (772)
218 KOG0072 GTP-binding ADP-ribosy 99.6 2.5E-16 5.4E-21 99.7 4.7 120 3-126 15-135 (182)
219 COG0218 Predicted GTPase [Gene 99.6 2.1E-15 4.5E-20 100.9 8.5 118 2-126 20-151 (200)
220 TIGR00484 EF-G translation elo 99.6 2.2E-15 4.7E-20 118.9 9.6 119 4-126 8-143 (689)
221 TIGR00437 feoB ferrous iron tr 99.6 5E-15 1.1E-19 114.9 10.9 106 13-126 1-115 (591)
222 cd01884 EF_Tu EF-Tu subfamily. 99.6 7.6E-15 1.6E-19 99.6 10.2 114 6-123 2-131 (195)
223 cd01888 eIF2_gamma eIF2-gamma 99.6 4.1E-15 8.9E-20 101.5 9.0 65 54-124 83-151 (203)
224 cd01896 DRG The developmentall 99.6 2.9E-14 6.2E-19 99.3 13.2 82 8-91 2-91 (233)
225 cd01876 YihA_EngB The YihA (En 99.6 6.3E-15 1.4E-19 96.5 9.0 110 8-124 1-124 (170)
226 KOG0077 Vesicle coat complex C 99.6 2.5E-15 5.3E-20 97.3 6.6 117 5-125 19-136 (193)
227 cd01883 EF1_alpha Eukaryotic e 99.6 4.7E-15 1E-19 102.3 8.1 115 8-124 1-151 (219)
228 TIGR00490 aEF-2 translation el 99.6 3.9E-15 8.5E-20 117.8 8.7 119 4-126 17-154 (720)
229 KOG1423 Ras-like GTPase ERA [C 99.6 8E-15 1.7E-19 103.5 6.7 123 4-129 70-204 (379)
230 KOG0090 Signal recognition par 99.6 9.4E-15 2E-19 98.2 6.7 119 5-127 37-162 (238)
231 CHL00071 tufA elongation facto 99.6 3.6E-14 7.8E-19 106.1 10.3 119 3-125 9-143 (409)
232 PRK12739 elongation factor G; 99.6 2.5E-14 5.3E-19 113.0 9.2 120 3-126 5-141 (691)
233 COG0486 ThdF Predicted GTPase 99.5 4.1E-14 8.8E-19 104.8 9.7 116 5-127 216-341 (454)
234 PRK12736 elongation factor Tu; 99.5 4.6E-14 1E-18 105.0 10.0 118 3-124 9-142 (394)
235 TIGR00485 EF-Tu translation el 99.5 5.6E-14 1.2E-18 104.6 10.2 118 3-124 9-142 (394)
236 PRK10512 selenocysteinyl-tRNA- 99.5 8.2E-14 1.8E-18 108.5 10.8 108 8-124 2-118 (614)
237 COG1160 Predicted GTPases [Gen 99.5 1.4E-13 3E-18 101.8 11.3 116 5-126 177-305 (444)
238 PRK12735 elongation factor Tu; 99.5 1.1E-13 2.3E-18 103.2 10.9 117 4-124 10-142 (396)
239 TIGR03680 eif2g_arch translati 99.5 2.9E-14 6.3E-19 106.5 7.8 120 4-125 2-149 (406)
240 PLN03126 Elongation factor Tu; 99.5 1.3E-13 2.8E-18 104.6 10.6 117 4-124 79-211 (478)
241 COG1084 Predicted GTPase [Gene 99.5 1.8E-13 3.9E-18 97.5 10.1 115 5-123 167-293 (346)
242 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.3E-13 5.1E-18 94.2 10.5 114 8-125 1-153 (224)
243 PRK04000 translation initiatio 99.5 1.4E-13 3E-18 102.9 9.4 115 3-124 6-153 (411)
244 PRK00007 elongation factor G; 99.5 2.4E-13 5.2E-18 107.4 10.3 119 4-126 8-143 (693)
245 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.8E-13 8.3E-18 96.3 10.0 120 4-126 36-169 (313)
246 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 7.5E-13 1.6E-17 89.8 11.0 114 7-125 1-131 (196)
247 PRK05124 cysN sulfate adenylyl 99.5 2.6E-13 5.6E-18 103.0 9.4 119 4-125 25-175 (474)
248 COG0481 LepA Membrane GTPase L 99.5 8E-14 1.7E-18 103.4 6.2 123 2-128 5-146 (603)
249 COG3596 Predicted GTPase [Gene 99.5 7.3E-14 1.6E-18 97.4 5.6 117 4-124 37-162 (296)
250 TIGR02034 CysN sulfate adenyly 99.5 1.8E-13 3.9E-18 102.2 8.0 115 7-124 1-147 (406)
251 PLN03127 Elongation factor Tu; 99.5 7.5E-13 1.6E-17 99.8 11.4 117 4-124 59-191 (447)
252 PRK00049 elongation factor Tu; 99.5 7E-13 1.5E-17 98.8 11.0 117 4-124 10-142 (396)
253 smart00010 small_GTPase Small 99.5 6.5E-13 1.4E-17 83.2 9.2 89 7-124 1-91 (124)
254 cd00066 G-alpha G protein alph 99.5 4.8E-13 1E-17 97.0 9.7 72 53-124 160-242 (317)
255 cd01853 Toc34_like Toc34-like 99.5 1.3E-12 2.8E-17 91.7 10.8 120 4-126 29-165 (249)
256 KOG0462 Elongation factor-type 99.4 3.9E-13 8.5E-18 101.1 7.8 122 4-129 58-196 (650)
257 PLN00116 translation elongatio 99.4 4.4E-13 9.6E-18 107.8 8.3 117 3-123 16-163 (843)
258 PTZ00416 elongation factor 2; 99.4 6E-13 1.3E-17 106.9 8.7 117 3-123 16-157 (836)
259 PRK05506 bifunctional sulfate 99.4 9.2E-13 2E-17 103.3 9.1 118 4-124 22-171 (632)
260 COG2262 HflX GTPases [General 99.4 2.3E-12 5E-17 94.3 10.4 120 4-126 190-320 (411)
261 PLN00043 elongation factor 1-a 99.4 3.5E-12 7.6E-17 96.3 10.5 116 4-123 5-158 (447)
262 PRK12740 elongation factor G; 99.4 9E-13 1.9E-17 104.0 7.5 111 12-126 1-128 (668)
263 smart00275 G_alpha G protein a 99.4 3.3E-12 7.2E-17 93.4 8.9 72 53-124 183-265 (342)
264 PRK07560 elongation factor EF- 99.4 3.6E-12 7.8E-17 101.4 9.0 119 4-126 18-155 (731)
265 KOG3886 GTP-binding protein [S 99.4 1.3E-12 2.7E-17 89.2 5.4 120 5-127 3-133 (295)
266 KOG1489 Predicted GTP-binding 99.4 9.4E-12 2E-16 88.5 9.9 118 7-126 197-328 (366)
267 PTZ00141 elongation factor 1- 99.3 9.5E-12 2.1E-16 93.9 10.2 117 4-123 5-158 (446)
268 COG0480 FusA Translation elong 99.3 7.7E-12 1.7E-16 98.2 8.1 121 3-127 7-145 (697)
269 COG0370 FeoB Fe2+ transport sy 99.3 4E-11 8.7E-16 92.6 10.9 113 5-125 2-123 (653)
270 cd01899 Ygr210 Ygr210 subfamil 99.3 3.1E-11 6.7E-16 87.5 9.2 80 9-88 1-110 (318)
271 COG0532 InfB Translation initi 99.3 6.3E-11 1.4E-15 89.2 10.7 121 4-128 3-125 (509)
272 KOG1145 Mitochondrial translat 99.3 4.9E-11 1.1E-15 90.1 9.7 120 4-128 151-271 (683)
273 PF00735 Septin: Septin; Inte 99.3 6.1E-11 1.3E-15 84.6 9.6 117 6-126 4-158 (281)
274 KOG1707 Predicted Ras related/ 99.3 1.6E-10 3.5E-15 87.7 12.2 119 4-126 423-542 (625)
275 PF10662 PduV-EutP: Ethanolami 99.3 1.1E-11 2.4E-16 79.6 5.0 96 8-123 3-102 (143)
276 PRK09602 translation-associate 99.2 8.3E-11 1.8E-15 87.5 10.1 82 7-88 2-113 (396)
277 COG1217 TypA Predicted membran 99.2 4.5E-11 9.7E-16 88.9 8.3 119 5-127 4-137 (603)
278 KOG1191 Mitochondrial GTPase [ 99.2 5.9E-11 1.3E-15 88.6 7.9 118 5-125 267-404 (531)
279 PF04548 AIG1: AIG1 family; I 99.2 2.2E-10 4.7E-15 78.8 9.9 116 7-127 1-133 (212)
280 COG0536 Obg Predicted GTPase [ 99.2 9.4E-11 2E-15 84.2 7.9 117 8-126 161-291 (369)
281 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.8E-10 6E-15 78.9 9.8 110 4-124 37-147 (225)
282 PF00350 Dynamin_N: Dynamin fa 99.2 2.6E-10 5.7E-15 75.2 8.5 63 55-120 102-168 (168)
283 COG5256 TEF1 Translation elong 99.2 1.9E-10 4.2E-15 84.4 8.2 125 2-127 3-162 (428)
284 KOG0468 U5 snRNP-specific prot 99.1 1.7E-10 3.8E-15 88.9 7.7 118 3-124 125-263 (971)
285 COG4108 PrfC Peptide chain rel 99.1 1.4E-10 2.9E-15 85.8 6.1 121 5-129 11-152 (528)
286 PF05049 IIGP: Interferon-indu 99.1 1.4E-10 3.1E-15 85.2 5.9 113 4-123 33-154 (376)
287 TIGR00993 3a0901s04IAP86 chlor 99.0 2.3E-09 5E-14 83.4 10.4 118 5-125 117-251 (763)
288 PRK14845 translation initiatio 99.0 2.4E-09 5.3E-14 87.4 9.6 100 17-123 472-591 (1049)
289 KOG1490 GTP-binding protein CR 99.0 4.8E-10 1E-14 84.1 4.7 120 5-127 167-298 (620)
290 smart00053 DYNc Dynamin, GTPas 99.0 6.4E-09 1.4E-13 72.6 9.9 69 54-125 125-207 (240)
291 PTZ00327 eukaryotic translatio 99.0 1.8E-09 3.8E-14 81.8 7.5 118 4-124 32-185 (460)
292 COG1163 DRG Predicted GTPase [ 99.0 6.7E-09 1.4E-13 74.4 9.8 91 4-96 61-160 (365)
293 PRK13768 GTPase; Provisional 99.0 9.8E-10 2.1E-14 77.5 5.3 73 55-127 98-179 (253)
294 KOG3905 Dynein light intermedi 98.9 7.9E-09 1.7E-13 74.2 9.0 98 6-105 52-155 (473)
295 PRK09866 hypothetical protein; 98.9 1.1E-08 2.4E-13 79.5 10.3 69 54-124 230-303 (741)
296 KOG3887 Predicted small GTPase 98.9 2.1E-09 4.6E-14 74.3 5.7 115 7-123 28-148 (347)
297 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4E-09 8.7E-14 68.0 6.6 54 8-64 85-138 (141)
298 KOG1532 GTPase XAB1, interacts 98.9 2.1E-09 4.5E-14 75.5 4.9 120 4-125 17-196 (366)
299 PF03029 ATP_bind_1: Conserved 98.9 4.9E-10 1.1E-14 78.3 1.8 68 55-124 92-170 (238)
300 TIGR02836 spore_IV_A stage IV 98.9 3.4E-08 7.3E-13 73.4 10.9 115 5-121 16-191 (492)
301 KOG0082 G-protein alpha subuni 98.9 1.2E-08 2.6E-13 74.4 8.4 72 53-124 194-276 (354)
302 PTZ00258 GTP-binding protein; 98.9 2.1E-08 4.5E-13 74.4 9.6 84 5-88 20-126 (390)
303 COG2895 CysN GTPases - Sulfate 98.9 1.5E-08 3.2E-13 73.4 8.3 124 2-128 2-157 (431)
304 KOG1954 Endocytosis/signaling 98.8 1.5E-08 3.2E-13 73.9 7.1 118 7-128 59-229 (532)
305 PRK09601 GTP-binding protein Y 98.8 6.5E-08 1.4E-12 71.2 10.3 82 7-88 3-107 (364)
306 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.4E-08 5.1E-13 65.5 7.1 55 5-63 101-156 (157)
307 cd01900 YchF YchF subfamily. 98.8 4.3E-08 9.3E-13 69.8 8.6 80 9-88 1-103 (274)
308 cd04178 Nucleostemin_like Nucl 98.8 2.6E-08 5.6E-13 66.4 7.0 55 5-63 116-171 (172)
309 COG5019 CDC3 Septin family pro 98.8 5.6E-08 1.2E-12 70.7 8.7 118 5-126 22-178 (373)
310 cd01856 YlqF YlqF. Proteins o 98.8 2.9E-08 6.4E-13 66.0 6.8 56 5-64 114-170 (171)
311 KOG2655 Septin family protein 98.7 9.3E-08 2E-12 69.9 9.1 118 6-127 21-175 (366)
312 cd01859 MJ1464 MJ1464. This f 98.7 5.4E-08 1.2E-12 63.6 7.1 55 5-63 100-155 (156)
313 KOG0467 Translation elongation 98.7 4.2E-08 9E-13 76.9 7.2 118 2-123 5-137 (887)
314 TIGR03596 GTPase_YlqF ribosome 98.7 6.9E-08 1.5E-12 68.9 7.5 57 5-65 117-174 (276)
315 TIGR00157 ribosome small subun 98.7 4.3E-08 9.4E-13 68.8 5.9 57 65-124 24-81 (245)
316 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.2E-07 2.6E-12 68.1 7.9 57 5-65 120-177 (287)
317 KOG0458 Elongation factor 1 al 98.7 1.4E-07 3E-12 72.1 8.5 123 4-127 175-332 (603)
318 KOG1547 Septin CDC10 and relat 98.7 1.8E-07 4E-12 64.8 8.1 115 5-123 45-197 (336)
319 KOG0705 GTPase-activating prot 98.6 2E-08 4.3E-13 76.4 3.2 112 6-124 30-143 (749)
320 PF05783 DLIC: Dynein light in 98.6 4.6E-07 1E-11 68.9 10.0 95 7-104 26-127 (472)
321 KOG2486 Predicted GTPase [Gene 98.6 4.1E-08 9E-13 69.1 4.0 115 4-124 134-262 (320)
322 COG1161 Predicted GTPases [Gen 98.6 1.5E-07 3.3E-12 68.6 6.7 57 5-65 131-188 (322)
323 cd01855 YqeH YqeH. YqeH is an 98.6 1.5E-07 3.2E-12 63.5 5.4 25 6-30 127-151 (190)
324 cd01849 YlqF_related_GTPase Yl 98.5 4.3E-07 9.2E-12 59.4 7.1 55 5-63 99-154 (155)
325 KOG1144 Translation initiation 98.5 3.5E-07 7.5E-12 71.9 7.2 111 6-123 475-605 (1064)
326 PF03193 DUF258: Protein of un 98.5 1.6E-07 3.5E-12 61.7 3.7 58 7-67 36-100 (161)
327 TIGR00750 lao LAO/AO transport 98.5 9.2E-07 2E-11 63.9 7.6 63 53-126 126-188 (300)
328 PRK09435 membrane ATPase/prote 98.5 1.2E-06 2.6E-11 64.0 8.0 61 53-124 148-208 (332)
329 COG0050 TufB GTPases - transla 98.4 4.2E-07 9E-12 64.7 5.2 119 4-126 10-144 (394)
330 KOG0464 Elongation factor G [T 98.4 2.1E-08 4.5E-13 74.3 -1.4 117 5-125 36-169 (753)
331 PRK12288 GTPase RsgA; Reviewed 98.4 3.4E-07 7.3E-12 67.4 4.8 22 9-30 208-229 (347)
332 TIGR03348 VI_IcmF type VI secr 98.4 2.8E-06 6.1E-11 71.2 10.5 110 9-123 114-256 (1169)
333 KOG0461 Selenocysteine-specifi 98.4 1.7E-06 3.6E-11 63.0 7.9 117 3-123 4-135 (522)
334 KOG0448 Mitofusin 1 GTPase, in 98.4 2.7E-06 5.8E-11 66.4 8.8 122 4-129 107-280 (749)
335 KOG4273 Uncharacterized conser 98.4 1.7E-06 3.7E-11 60.5 7.0 116 6-123 4-122 (418)
336 COG0012 Predicted GTPase, prob 98.4 2.6E-06 5.7E-11 62.4 8.3 83 6-88 2-108 (372)
337 KOG1486 GTP-binding protein DR 98.3 1.9E-05 4.1E-10 55.4 11.2 98 4-103 60-165 (364)
338 TIGR00092 GTP-binding protein 98.3 4E-06 8.8E-11 61.9 8.4 82 7-88 3-108 (368)
339 TIGR03597 GTPase_YqeH ribosome 98.3 1.6E-06 3.4E-11 64.2 5.6 24 7-30 155-178 (360)
340 PRK12289 GTPase RsgA; Reviewed 98.3 2.2E-06 4.8E-11 63.2 6.1 22 9-30 175-196 (352)
341 COG4917 EutP Ethanolamine util 98.3 3.4E-07 7.3E-12 57.3 1.5 97 8-123 3-103 (148)
342 cd01851 GBP Guanylate-binding 98.3 8.2E-06 1.8E-10 56.6 8.3 63 5-67 6-73 (224)
343 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.5E-06 3.2E-11 62.5 4.7 24 7-30 162-185 (287)
344 KOG0465 Mitochondrial elongati 98.3 7.1E-07 1.5E-11 68.7 3.2 121 5-129 38-175 (721)
345 TIGR00157 ribosome small subun 98.2 3.2E-06 6.9E-11 59.5 6.0 23 8-30 122-144 (245)
346 KOG0410 Predicted GTP binding 98.2 1.8E-06 4E-11 62.2 4.6 119 5-126 177-310 (410)
347 KOG1491 Predicted GTP-binding 98.2 7.1E-06 1.5E-10 59.5 7.4 85 4-88 18-125 (391)
348 KOG0469 Elongation factor 2 [T 98.2 3.4E-06 7.4E-11 64.1 5.6 117 3-123 16-163 (842)
349 KOG0099 G protein subunit Galp 98.2 3.5E-06 7.5E-11 59.3 4.9 70 53-123 201-282 (379)
350 PRK13796 GTPase YqeH; Provisio 98.1 3.2E-06 7E-11 62.7 4.6 24 7-30 161-184 (365)
351 cd03112 CobW_like The function 98.1 1.8E-05 4E-10 51.9 7.5 21 9-29 3-23 (158)
352 KOG3859 Septins (P-loop GTPase 98.1 7.2E-06 1.6E-10 58.2 5.6 117 5-125 41-191 (406)
353 PRK00098 GTPase RsgA; Reviewed 98.1 6.1E-06 1.3E-10 59.6 5.0 23 8-30 166-188 (298)
354 COG1162 Predicted GTPases [Gen 98.1 4.5E-06 9.7E-11 59.8 3.7 22 8-29 166-187 (301)
355 PF06858 NOG1: Nucleolar GTP-b 98.0 2.5E-05 5.4E-10 42.2 5.4 44 77-121 13-58 (58)
356 TIGR01425 SRP54_euk signal rec 98.0 2.3E-05 5E-10 59.1 7.2 65 53-123 182-252 (429)
357 KOG1424 Predicted GTP-binding 97.9 1.8E-05 3.8E-10 60.2 4.8 56 6-65 314-370 (562)
358 COG5192 BMS1 GTP-binding prote 97.9 6E-05 1.3E-09 58.4 7.7 111 4-124 67-177 (1077)
359 COG1618 Predicted nucleotide k 97.8 0.00054 1.2E-08 45.1 10.0 56 5-62 4-59 (179)
360 COG3523 IcmF Type VI protein s 97.8 4.3E-05 9.3E-10 63.7 6.1 112 9-123 128-269 (1188)
361 PF00503 G-alpha: G-protein al 97.8 5.7E-05 1.2E-09 56.5 6.1 71 54-124 236-317 (389)
362 KOG0085 G protein subunit Galp 97.8 4.6E-06 1E-10 57.8 0.0 73 53-126 198-282 (359)
363 KOG0460 Mitochondrial translat 97.8 8.2E-05 1.8E-09 54.3 6.2 117 4-123 52-183 (449)
364 PRK08118 topology modulation p 97.8 2.8E-05 6E-10 51.6 3.4 23 7-29 2-24 (167)
365 COG0563 Adk Adenylate kinase a 97.8 2.6E-05 5.7E-10 52.3 3.3 23 7-29 1-23 (178)
366 COG3276 SelB Selenocysteine-sp 97.8 0.00018 3.8E-09 54.0 7.7 111 8-124 2-117 (447)
367 cd01855 YqeH YqeH. YqeH is an 97.8 2.1E-05 4.6E-10 53.0 2.7 52 67-124 24-75 (190)
368 PF13207 AAA_17: AAA domain; P 97.8 2.7E-05 5.9E-10 48.5 3.0 22 8-29 1-22 (121)
369 cd01854 YjeQ_engC YjeQ/EngC. 97.7 4.9E-05 1.1E-09 54.7 4.6 50 72-124 73-123 (287)
370 KOG2484 GTPase [General functi 97.7 4.1E-05 8.9E-10 56.6 4.2 58 4-65 250-308 (435)
371 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.1E-05 8.9E-10 49.2 3.4 50 73-124 7-56 (141)
372 PRK07261 topology modulation p 97.7 3.9E-05 8.5E-10 51.0 3.3 21 8-28 2-22 (171)
373 PRK00098 GTPase RsgA; Reviewed 97.7 7.7E-05 1.7E-09 54.0 4.8 48 74-123 77-124 (298)
374 cd02038 FleN-like FleN is a me 97.7 0.00026 5.5E-09 45.5 6.7 106 11-123 5-110 (139)
375 TIGR00235 udk uridine kinase. 97.7 6.7E-05 1.4E-09 51.4 4.1 28 1-28 1-28 (207)
376 TIGR00064 ftsY signal recognit 97.7 0.00016 3.5E-09 51.7 6.2 64 53-123 154-230 (272)
377 PRK10416 signal recognition pa 97.7 0.00015 3.3E-09 52.9 6.1 24 5-28 113-136 (318)
378 PF13671 AAA_33: AAA domain; P 97.7 3.8E-05 8.3E-10 49.1 2.7 20 9-28 2-21 (143)
379 PRK14722 flhF flagellar biosyn 97.6 0.00019 4E-09 53.4 6.5 23 6-28 137-159 (374)
380 PRK12289 GTPase RsgA; Reviewed 97.6 0.00013 2.9E-09 53.9 5.3 52 70-124 82-134 (352)
381 PRK14974 cell division protein 97.6 7E-05 1.5E-09 55.0 3.7 64 54-123 223-292 (336)
382 KOG2485 Conserved ATP/GTP bind 97.6 8E-05 1.7E-09 53.6 3.8 60 5-65 142-207 (335)
383 cd00009 AAA The AAA+ (ATPases 97.6 0.00051 1.1E-08 43.3 7.3 25 6-30 19-43 (151)
384 PRK10751 molybdopterin-guanine 97.6 9.1E-05 2E-09 49.4 3.8 29 1-29 1-29 (173)
385 PRK12727 flagellar biosynthesi 97.6 0.00021 4.5E-09 55.3 6.1 22 7-28 351-372 (559)
386 cd01858 NGP_1 NGP-1. Autoanti 97.6 0.00011 2.4E-09 48.0 3.9 49 74-124 5-53 (157)
387 COG5257 GCD11 Translation init 97.5 0.00012 2.6E-09 53.1 4.2 114 5-127 9-157 (415)
388 cd01859 MJ1464 MJ1464. This f 97.5 5E-05 1.1E-09 49.5 2.1 52 68-123 3-54 (156)
389 KOG0447 Dynamin-like GTP bindi 97.5 0.00099 2.1E-08 51.7 9.1 68 55-125 413-494 (980)
390 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0012 2.7E-08 38.8 7.6 68 9-89 2-70 (99)
391 cd02019 NK Nucleoside/nucleoti 97.5 0.00014 3.1E-09 41.0 3.2 21 9-29 2-22 (69)
392 KOG1487 GTP-binding protein DR 97.5 0.0014 3E-08 46.4 8.5 85 6-92 59-151 (358)
393 KOG1143 Predicted translation 97.5 0.00024 5.2E-09 52.6 4.8 67 55-125 250-318 (591)
394 PF13521 AAA_28: AAA domain; P 97.4 7.8E-05 1.7E-09 49.0 2.1 22 8-29 1-22 (163)
395 PRK06217 hypothetical protein; 97.4 0.00015 3.1E-09 48.7 3.4 23 7-29 2-24 (183)
396 PTZ00088 adenylate kinase 1; P 97.4 0.00017 3.7E-09 50.3 3.8 27 2-28 2-28 (229)
397 PRK05480 uridine/cytidine kina 97.4 0.00021 4.5E-09 48.9 4.1 26 3-28 3-28 (209)
398 TIGR03597 GTPase_YqeH ribosome 97.4 7.6E-05 1.6E-09 55.4 1.9 55 64-124 50-104 (360)
399 cd02042 ParA ParA and ParB of 97.4 0.0011 2.5E-08 40.1 6.8 82 9-102 2-84 (104)
400 COG1419 FlhF Flagellar GTP-bin 97.4 0.00048 1E-08 51.5 5.9 64 53-123 281-351 (407)
401 PRK14738 gmk guanylate kinase; 97.4 0.00028 6E-09 48.4 4.4 26 4-29 11-36 (206)
402 COG3640 CooC CO dehydrogenase 97.4 0.0028 6.1E-08 44.2 9.2 46 75-123 153-198 (255)
403 cd03111 CpaE_like This protein 97.4 0.0013 2.9E-08 40.2 7.0 100 9-119 2-106 (106)
404 COG5258 GTPBP1 GTPase [General 97.4 0.00012 2.6E-09 54.3 2.6 120 3-126 114-271 (527)
405 KOG3929 Uncharacterized conser 97.4 9.1E-05 2E-09 52.2 1.9 86 6-94 45-136 (363)
406 PRK03839 putative kinase; Prov 97.4 0.00019 4.1E-09 48.0 3.3 21 8-28 2-22 (180)
407 PF00004 AAA: ATPase family as 97.4 0.0002 4.3E-09 44.9 3.2 21 9-29 1-21 (132)
408 PRK14723 flhF flagellar biosyn 97.4 0.0006 1.3E-08 54.9 6.5 22 7-28 186-207 (767)
409 TIGR00959 ffh signal recogniti 97.4 0.00045 9.8E-09 52.4 5.5 22 5-26 98-119 (428)
410 PF03266 NTPase_1: NTPase; In 97.4 0.00021 4.5E-09 47.5 3.3 21 8-28 1-21 (168)
411 PRK00771 signal recognition pa 97.4 0.00034 7.3E-09 53.2 4.8 23 5-27 94-116 (437)
412 PF09547 Spore_IV_A: Stage IV 97.4 0.0075 1.6E-07 45.6 11.7 113 7-121 18-191 (492)
413 PRK14530 adenylate kinase; Pro 97.4 0.0002 4.4E-09 49.3 3.4 22 7-28 4-25 (215)
414 TIGR00101 ureG urease accessor 97.3 0.00024 5.1E-09 48.5 3.5 24 6-29 1-24 (199)
415 PF13238 AAA_18: AAA domain; P 97.3 0.00018 4E-09 44.9 2.8 21 9-29 1-21 (129)
416 TIGR00073 hypB hydrogenase acc 97.3 0.00023 5.1E-09 48.7 3.4 27 3-29 19-45 (207)
417 KOG0780 Signal recognition par 97.3 0.00026 5.6E-09 52.5 3.8 54 51-104 181-240 (483)
418 smart00382 AAA ATPases associa 97.3 0.00027 5.8E-09 44.1 3.4 26 7-32 3-28 (148)
419 PRK10867 signal recognition pa 97.3 0.00046 9.9E-09 52.4 5.1 23 5-27 99-121 (433)
420 KOG2423 Nucleolar GTPase [Gene 97.3 0.00012 2.6E-09 54.5 1.9 83 3-92 304-389 (572)
421 PF05621 TniB: Bacterial TniB 97.3 0.00036 7.8E-09 50.3 4.2 26 5-30 60-85 (302)
422 PRK14532 adenylate kinase; Pro 97.3 0.00025 5.5E-09 47.6 3.3 21 8-28 2-22 (188)
423 PRK14527 adenylate kinase; Pro 97.3 0.00033 7.2E-09 47.3 3.8 28 1-28 1-28 (191)
424 COG1126 GlnQ ABC-type polar am 97.3 0.00025 5.5E-09 48.8 3.2 21 8-28 30-50 (240)
425 PF04665 Pox_A32: Poxvirus A32 97.3 0.00027 5.8E-09 49.5 3.4 26 4-29 11-36 (241)
426 PRK14737 gmk guanylate kinase; 97.3 0.00036 7.9E-09 47.1 3.9 23 7-29 5-27 (186)
427 PRK06547 hypothetical protein; 97.3 0.00034 7.3E-09 46.7 3.6 26 3-28 12-37 (172)
428 PRK14531 adenylate kinase; Pro 97.3 0.0003 6.5E-09 47.2 3.4 23 6-28 2-24 (183)
429 COG1136 SalX ABC-type antimicr 97.3 0.00024 5.3E-09 49.2 3.0 21 9-29 34-54 (226)
430 TIGR02322 phosphon_PhnN phosph 97.3 0.00027 5.9E-09 47.1 3.2 22 8-29 3-24 (179)
431 cd00071 GMPK Guanosine monopho 97.3 0.00029 6.2E-09 45.2 3.2 21 9-29 2-22 (137)
432 PF03205 MobB: Molybdopterin g 97.3 0.00024 5.2E-09 45.8 2.8 22 8-29 2-23 (140)
433 PF13555 AAA_29: P-loop contai 97.3 0.0004 8.6E-09 38.4 3.1 21 8-28 25-45 (62)
434 PRK13949 shikimate kinase; Pro 97.2 0.00037 7.9E-09 46.3 3.4 21 8-28 3-23 (169)
435 PRK08233 hypothetical protein; 97.2 0.00042 9.1E-09 46.1 3.7 23 6-28 3-25 (182)
436 PLN02200 adenylate kinase fami 97.2 0.00046 1E-08 48.3 3.9 24 5-28 42-65 (234)
437 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00032 7E-09 46.9 3.1 21 7-27 4-24 (188)
438 PRK12288 GTPase RsgA; Reviewed 97.2 0.00078 1.7E-08 49.8 5.2 46 76-124 119-164 (347)
439 PRK10078 ribose 1,5-bisphospho 97.2 0.00039 8.4E-09 46.8 3.3 22 8-29 4-25 (186)
440 TIGR03263 guanyl_kin guanylate 97.2 0.00036 7.8E-09 46.5 3.1 22 8-29 3-24 (180)
441 PF07728 AAA_5: AAA domain (dy 97.2 0.00036 7.8E-09 44.5 3.0 21 8-28 1-21 (139)
442 KOG3347 Predicted nucleotide k 97.2 0.00027 5.9E-09 45.9 2.3 25 4-28 5-29 (176)
443 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00038 8.3E-09 46.5 3.2 20 9-28 2-21 (183)
444 cd01428 ADK Adenylate kinase ( 97.2 0.00035 7.6E-09 47.0 3.0 22 8-29 1-22 (194)
445 PHA00729 NTP-binding motif con 97.2 0.00047 1E-08 47.8 3.5 25 5-29 16-40 (226)
446 PRK01889 GTPase RsgA; Reviewed 97.2 0.00051 1.1E-08 50.9 3.9 24 7-30 196-219 (356)
447 cd01131 PilT Pilus retraction 97.2 0.0015 3.3E-08 44.5 5.9 21 9-29 4-24 (198)
448 PRK00625 shikimate kinase; Pro 97.2 0.00043 9.4E-09 46.2 3.1 21 8-28 2-22 (173)
449 TIGR01351 adk adenylate kinase 97.2 0.00038 8.2E-09 47.7 3.0 21 8-28 1-21 (210)
450 PRK02496 adk adenylate kinase; 97.1 0.00054 1.2E-08 45.9 3.5 22 7-28 2-23 (184)
451 PF13401 AAA_22: AAA domain; P 97.1 0.00041 8.8E-09 43.6 2.7 23 7-29 5-27 (131)
452 cd02023 UMPK Uridine monophosp 97.1 0.00048 1E-08 46.7 3.2 20 9-28 2-21 (198)
453 PF00005 ABC_tran: ABC transpo 97.1 0.00045 9.7E-09 43.8 2.8 22 8-29 13-34 (137)
454 COG1116 TauB ABC-type nitrate/ 97.1 0.00048 1E-08 48.2 3.0 20 9-28 32-51 (248)
455 PLN02674 adenylate kinase 97.1 0.0006 1.3E-08 48.0 3.6 25 4-28 29-53 (244)
456 PRK12726 flagellar biosynthesi 97.1 0.00096 2.1E-08 49.8 4.7 23 6-28 206-228 (407)
457 COG0194 Gmk Guanylate kinase [ 97.1 0.00041 9E-09 46.5 2.5 24 7-30 5-28 (191)
458 PRK13851 type IV secretion sys 97.1 0.003 6.6E-08 46.6 7.3 25 5-29 161-185 (344)
459 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00057 1.2E-08 42.0 2.9 21 7-27 16-36 (107)
460 PF13191 AAA_16: AAA ATPase do 97.1 0.00049 1.1E-08 45.7 2.8 24 5-28 23-46 (185)
461 PRK00300 gmk guanylate kinase; 97.1 0.0006 1.3E-08 46.4 3.2 23 7-29 6-28 (205)
462 cd02021 GntK Gluconate kinase 97.1 0.00064 1.4E-08 43.9 3.1 21 9-29 2-22 (150)
463 TIGR01313 therm_gnt_kin carboh 97.0 0.00052 1.1E-08 45.0 2.6 20 9-28 1-20 (163)
464 COG0541 Ffh Signal recognition 97.0 0.0012 2.6E-08 49.7 4.7 62 54-121 183-250 (451)
465 cd02025 PanK Pantothenate kina 97.0 0.00063 1.4E-08 47.1 3.0 20 9-28 2-21 (220)
466 PRK00279 adk adenylate kinase; 97.0 0.00077 1.7E-08 46.4 3.3 22 7-28 1-22 (215)
467 PRK05057 aroK shikimate kinase 97.0 0.00088 1.9E-08 44.6 3.5 23 6-28 4-26 (172)
468 PRK06762 hypothetical protein; 97.0 0.00078 1.7E-08 44.3 3.2 23 7-29 3-25 (166)
469 PRK05416 glmZ(sRNA)-inactivati 97.0 0.0099 2.1E-07 42.9 9.0 22 6-27 6-27 (288)
470 PRK13900 type IV secretion sys 97.0 0.0037 8.1E-08 46.0 7.0 25 5-29 159-183 (332)
471 PRK13695 putative NTPase; Prov 97.0 0.00086 1.9E-08 44.6 3.4 22 7-28 1-22 (174)
472 PF13479 AAA_24: AAA domain 97.0 0.00069 1.5E-08 46.6 2.9 22 5-26 2-23 (213)
473 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0033 7.1E-08 40.2 5.8 23 7-29 23-45 (133)
474 PRK14528 adenylate kinase; Pro 97.0 0.00089 1.9E-08 45.1 3.4 22 7-28 2-23 (186)
475 cd01130 VirB11-like_ATPase Typ 97.0 0.00089 1.9E-08 45.1 3.4 24 6-29 25-48 (186)
476 PF05729 NACHT: NACHT domain 97.0 0.00078 1.7E-08 43.8 3.0 21 9-29 3-23 (166)
477 PF00485 PRK: Phosphoribulokin 97.0 0.00069 1.5E-08 45.9 2.8 20 9-28 2-21 (194)
478 PRK05541 adenylylsulfate kinas 97.0 0.0011 2.3E-08 44.2 3.6 24 5-28 6-29 (176)
479 COG1936 Predicted nucleotide k 97.0 0.00079 1.7E-08 44.7 2.9 21 7-27 1-21 (180)
480 PRK08356 hypothetical protein; 97.0 0.0011 2.3E-08 45.0 3.6 23 6-28 5-27 (195)
481 PRK14529 adenylate kinase; Pro 97.0 0.00092 2E-08 46.4 3.3 22 7-28 1-22 (223)
482 PRK06696 uridine kinase; Valid 96.9 0.0012 2.5E-08 45.8 3.8 26 3-28 19-44 (223)
483 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.9 0.0021 4.6E-08 43.8 5.0 78 7-105 39-116 (205)
484 cd00227 CPT Chloramphenicol (C 96.9 0.00093 2E-08 44.5 3.2 22 8-29 4-25 (175)
485 cd03116 MobB Molybdenum is an 96.9 0.00097 2.1E-08 43.9 3.2 21 8-28 3-23 (159)
486 PRK09270 nucleoside triphospha 96.9 0.0013 2.7E-08 45.8 3.9 25 4-28 31-55 (229)
487 PRK00131 aroK shikimate kinase 96.9 0.0012 2.5E-08 43.5 3.5 23 6-28 4-26 (175)
488 PRK13947 shikimate kinase; Pro 96.9 0.0011 2.3E-08 43.8 3.3 21 8-28 3-23 (171)
489 KOG2743 Cobalamin synthesis pr 96.9 0.0035 7.7E-08 45.3 5.9 22 9-30 60-81 (391)
490 PTZ00301 uridine kinase; Provi 96.9 0.00098 2.1E-08 45.9 3.1 21 7-27 4-24 (210)
491 PRK10463 hydrogenase nickel in 96.9 0.00083 1.8E-08 48.3 2.9 25 5-29 103-127 (290)
492 PF02367 UPF0079: Uncharacteri 96.9 0.0033 7E-08 39.6 5.1 23 7-29 16-38 (123)
493 PF13173 AAA_14: AAA domain 96.9 0.001 2.2E-08 42.0 2.9 24 8-31 4-27 (128)
494 PRK13833 conjugal transfer pro 96.9 0.0036 7.7E-08 45.9 6.0 24 6-29 144-167 (323)
495 PRK08099 bifunctional DNA-bind 96.9 0.001 2.3E-08 50.0 3.4 24 6-29 219-242 (399)
496 cd03238 ABC_UvrA The excision 96.9 0.0012 2.7E-08 44.1 3.3 22 7-28 22-43 (176)
497 PRK14526 adenylate kinase; Pro 96.9 0.0012 2.7E-08 45.4 3.4 21 8-28 2-22 (211)
498 cd00464 SK Shikimate kinase (S 96.9 0.00098 2.1E-08 43.1 2.7 21 8-28 1-21 (154)
499 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0012 2.6E-08 48.4 3.4 22 7-28 163-184 (325)
500 PRK04040 adenylate kinase; Pro 96.9 0.0013 2.8E-08 44.5 3.4 22 7-28 3-24 (188)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-37 Score=201.48 Aligned_cols=122 Identities=38% Similarity=0.734 Sum_probs=115.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|||||+|+.||..+.|.+.+.+|++.++ .+++.++++.++++||||+||++|+++...|++++||+|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 4679999999999999999999999999999999999998 568889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||+++.+||+.+ ..|+.+++++. +++|.++||||||+.+..
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence 99999999999999 99999999987 678999999999998444
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-35 Score=191.77 Aligned_cols=135 Identities=36% Similarity=0.650 Sum_probs=120.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
....+|++++|+.+||||||+.||..+.|.+...+|++-.| +..+.+++..+++.||||+||++|+++.+.|+++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35679999999999999999999999999998889997776 77888999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC------------ccccceeeeccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD------------PYFLLWFLFLSI 138 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~------------~~~~~~~~~~s~ 138 (139)
|+|||+++.+||..+ +.|++++++.. +++-+.|||||+|+.+.+ ...+.||+..+.
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAK 150 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAK 150 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecc
Confidence 999999999999999 99999998876 678888999999998533 345666666553
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=183.29 Aligned_cols=124 Identities=30% Similarity=0.582 Sum_probs=117.0
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 79 (139)
|.....+|++++|+.|||||+|+.||....|.+.+..|++.++ .+.+.++++.+++++|||+||+.|++....|++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 5667889999999999999999999999999999999999988 667889999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++++|||+++.++|+.+ ..|+..++++. +|..++|+|||+|+..-
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 99999999999999999 99999999985 99999999999999843
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-33 Score=185.95 Aligned_cols=134 Identities=31% Similarity=0.602 Sum_probs=121.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+|++++|+++||||+++.||..+.|...+..|++..+ .+++..++..+.+++|||+||++|+.+...|++++++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 5689999999999999999999999999999999999988 568889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC------------ccccceeeeccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD------------PYFLLWFLFLSI 138 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~------------~~~~~~~~~~s~ 138 (139)
+|||+++..||+.+ ..|++.++++. +++|.+|||||+|+...+ +++..|++..+.
T Consensus 90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk 157 (207)
T KOG0078|consen 90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAK 157 (207)
T ss_pred EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEcccc
Confidence 99999999999999 77999999988 589999999999998633 345566666554
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-33 Score=182.81 Aligned_cols=123 Identities=33% Similarity=0.546 Sum_probs=113.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
-+.+|++|+|+.+||||||++||+.+.|...|.+|++.+| ..++.+.+..+.+++|||+|||+|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3569999999999999999999999999999999999998 567788899999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-C-CCCEEEEeecCCccccCc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~~vivv~nK~D~~~~~~ 127 (139)
+|||+++.+||+.. +.|++.+.... + ++-+++||||.||.+.++
T Consensus 100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq 145 (221)
T KOG0094|consen 100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ 145 (221)
T ss_pred EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh
Confidence 99999999999999 89999998766 3 477899999999985543
No 6
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.2e-32 Score=181.41 Aligned_cols=119 Identities=87% Similarity=1.375 Sum_probs=110.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+|++++|++++|||||+.||..+.|...+.+|.+..+...+..++..+++++|||+|+++|+.+++.++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999889999987777777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+++++||+.+.+.|+..+++..+++|++|||||+|+...
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD 120 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC
Confidence 999999999856899999887789999999999999543
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.3e-32 Score=182.82 Aligned_cols=122 Identities=36% Similarity=0.718 Sum_probs=113.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
++..+||+++|+++||||||++||..+.|.+.+.|+.+..+...+.+++..+.+++|||+|+++|+.+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 56789999999999999999999999999998999998777777888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||++++++|+.+...|++.+++..++.|++|||||+|+..
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 999999999999976789999998888999999999999854
No 8
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.3e-32 Score=183.08 Aligned_cols=121 Identities=63% Similarity=1.072 Sum_probs=110.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
..+||+++|+++||||||++||..+.|...+.++.+..+...+..++..+.+++|||+|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 35899999999999999999999999988889999877766677888899999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
||++++++|+.+...|...+.+..+++|+++||||+|+.+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND 122 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence 99999999999955799888877789999999999999654
No 9
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.7e-32 Score=180.78 Aligned_cols=119 Identities=35% Similarity=0.717 Sum_probs=110.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
++||+++|++|||||||+++|..+.|...+.++.+..+...+.+++..+.+++|||+|++.|+.+.+.++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999988889988777777888999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|+++++||+.+.+.|++.+++..++.|+++||||+|+..
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 999999999965889999998888999999999999853
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=175.76 Aligned_cols=119 Identities=35% Similarity=0.645 Sum_probs=110.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|++|||||||+-||..+.|.+....+++.+| .+.+.+++..+++.+|||+||++|+.+.+.|++++.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 469999999999999999999999999998777888888 5577899999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
|||++.+++|..+ +.|++++.-++ +++-.++||||+|.+.
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 9999999999999 99999999887 6777899999999873
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.1e-32 Score=179.39 Aligned_cols=122 Identities=38% Similarity=0.627 Sum_probs=115.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|+++||||-|+.||..+.|..+..+|++.++ +..+.++++.++.+||||+||++|+.+...|++++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 3579999999999999999999999999999999998887 678889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++...+|+.+ +.|+.+++.+. +++++++||||+||.+.+
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lr 135 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLR 135 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhcc
Confidence 99999999999998 99999999988 899999999999998633
No 12
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.98 E-value=3.5e-31 Score=176.86 Aligned_cols=119 Identities=60% Similarity=1.097 Sum_probs=109.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||+++|..+.|.+.+.|+.+..+...+..++..+.+++||++|++++..++..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998888999987777667788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++++++|+.+.+.|+..++...+++|+++||||+|+...
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 999999999955799999877788999999999998654
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.98 E-value=4.8e-31 Score=178.08 Aligned_cols=121 Identities=33% Similarity=0.595 Sum_probs=109.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|+.|||||||+.+|..+.+...+.++.+..+ ...+..++..+.+++||++|+++|+.++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999999887777776655 456777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++|+.+ +.|++++.+..+++|++|||||+|+...
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~ 125 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFK 125 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhc
Confidence 99999999999999 8899999887789999999999999653
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.2e-31 Score=182.53 Aligned_cols=120 Identities=37% Similarity=0.681 Sum_probs=111.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
..+||+++|++|||||||+++|..+.|...+.++++..+...+..++..+.+++|||+|++.|+.+.+.++++++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999999999999888877788899999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
||++++++|+.+...|++.+++..++.|+++||||+|+..
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9999999999855899999998778999999999999853
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=7.2e-31 Score=178.81 Aligned_cols=117 Identities=31% Similarity=0.600 Sum_probs=106.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+.|+++|.+|||||||++||..+.|...+.++.+..+ ...+..++..+++++||++|+++|+.++..++++++++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999988888887665 556788888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
|++++++|+.+ +.|++.+++.. +++|+++||||+|+..
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999999 88999888765 6899999999999863
No 16
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-31 Score=169.51 Aligned_cols=131 Identities=32% Similarity=0.599 Sum_probs=118.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+|++++|++.+|||||+.||.++.|.+.+.+|.+..+.. ++.-..+.+++++|||+|||+++.+...+++++.++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 5799999999999999999999999999999999998854 555567789999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc------------Cccccceeeecc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC------------DPYFLLWFLFLS 137 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~------------~~~~~~~~~~~s 137 (139)
||+++++||+.+ +.|.-.++.++ .++|+++||||||+... ++++.+||+..|
T Consensus 101 yDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSa 165 (193)
T KOG0093|consen 101 YDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSA 165 (193)
T ss_pred EecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcc
Confidence 999999999999 99999999987 89999999999999843 356677777655
No 17
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=5.5e-32 Score=171.08 Aligned_cols=120 Identities=33% Similarity=0.668 Sum_probs=113.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+.+|.+|+|++|+|||||+.+|..+.|...|..|++.++ .+++.+++..++++|||++||++|+.+...|++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 457899999999999999999999999999999998887 5688899999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|||+++.+||..+ +.|+++++..++..|-++||||.|.+..
T Consensus 87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCccc
Confidence 9999999999999 9999999999999999999999998743
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=8.8e-32 Score=175.50 Aligned_cols=121 Identities=33% Similarity=0.614 Sum_probs=112.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|+|||||+++|.+.+|...+..|++..+ ++.+.+++..+.++||||+||++|.++.-.+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 4579999999999999999999999999999999998777 788889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~~ 125 (139)
++||+.+++||+.+ +.|.+++-.+. ...|.+|+|||+|+..+
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 99999999999999 99999987654 35899999999999754
No 19
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.6e-30 Score=173.56 Aligned_cols=118 Identities=72% Similarity=1.225 Sum_probs=108.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||+.+|+.+.|.+.+.++....+...+..++..+++.+|||+|++.+..+++.+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999998888888877666667788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++++++|+.+...|+..+....++.|+++||||+|+..
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 99999999996689998887778899999999999964
No 20
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=1.4e-30 Score=179.44 Aligned_cols=119 Identities=35% Similarity=0.738 Sum_probs=110.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
++||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999999989999998777777888999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|++++++|+.+.+.|...++...++.|++|||||+|+..
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 999999999997789988887778999999999999854
No 21
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.4e-30 Score=173.40 Aligned_cols=120 Identities=48% Similarity=0.804 Sum_probs=108.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
.||+++|++|||||||+++|..+.|...+.++.+..+...+..++..+.+++||++|++.++.+++.++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 48999999999999999999999998888888877776667778888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++++++|+.+...|+..+....++.|+++||||+|+...+
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 9999999998557999998877899999999999997543
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=3.9e-30 Score=171.35 Aligned_cols=120 Identities=27% Similarity=0.495 Sum_probs=108.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|.+|||||||+++|..+.|.+.+.++.+..+...+..++..+.+++||++|+++++.++..+++.++++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35899999999999999999999999988888888877777778889889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
||++++++|+.+ ..|...+.+.. +++|+++||||+|+...
T Consensus 81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 999999999999 67888877643 68999999999998643
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.1e-29 Score=167.87 Aligned_cols=120 Identities=29% Similarity=0.607 Sum_probs=106.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+||+++|++|||||||+++|..+.+.+.+.++.+..+ ...+..++..+++++||++|+++++..+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888777776665 44567788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
||++++++|+.+ ..|++.+.... ++.|+++||||+|+....
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 999999999999 88998887654 679999999999997543
No 24
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=170.72 Aligned_cols=121 Identities=34% Similarity=0.541 Sum_probs=109.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+..+||+++|++|+|||||+++|..+.+...+.++.+..+...+..++..+.+++|||+|++++..++..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999999998888888887777778888989999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
|||++++++|+.+ ..|+..+.+.. +++|+++|+||+|+...
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999 77888887653 58999999999998643
No 25
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1.4e-29 Score=166.43 Aligned_cols=117 Identities=29% Similarity=0.559 Sum_probs=105.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+++||++|+++++.++..++++++++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988887888776667777788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
++++++++.+ ..|+..+.+.. ++.|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999998 77888887643 5799999999999864
No 26
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.2e-29 Score=169.38 Aligned_cols=119 Identities=50% Similarity=0.957 Sum_probs=106.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||+++|.++.+...+.++.+..+...+... +..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877765556665 77889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|++++++|+.+...|+..+....++.|+++||||+|+...
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 9999999999966799888877788999999999998653
No 27
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.5e-29 Score=173.31 Aligned_cols=120 Identities=29% Similarity=0.495 Sum_probs=108.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+++.+||++|++++..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5679999999999999999999999999888888887654 445666777899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||++++++++.+ ..|+..+.+..++.|+++||||+|+..
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 99999999999999 889999988778999999999999853
No 28
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=3.3e-29 Score=166.55 Aligned_cols=116 Identities=68% Similarity=1.168 Sum_probs=106.5
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (139)
|+++|++|||||||+++|..+.+...+.++....+...+..++..+.+.+|||+|++++..+++.+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888887777777778888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 89 ~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++++|+.+...|+..+.+..++.|+++||||+|+..
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 999999996679999988778999999999999864
No 29
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=4.9e-29 Score=165.95 Aligned_cols=118 Identities=56% Similarity=1.031 Sum_probs=107.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+|++++|++|+|||||++++.++.|...+.++....+...+..++..+.+++||++|++++..+++.+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999998888888776666677888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++++++|+.+.+.|+..+....++.|++++|||+|+..
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 99999999986689998887667899999999999864
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=3.2e-29 Score=165.26 Aligned_cols=117 Identities=29% Similarity=0.556 Sum_probs=105.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|.+|||||||+++++.+.+.+.+.++.+..+...+..++..+.+++||++|++.++.++..+++++|++++|||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 69999999999999999999999988888888877777777888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
++++++++.+ ..|+..+... .++.|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 82 ITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 9999999998 7787777653 26899999999999964
No 31
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=2.5e-29 Score=171.11 Aligned_cols=118 Identities=25% Similarity=0.393 Sum_probs=102.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
+||+++|+++||||||+++|+.+.|...+.+|++..+ ...+.++ +..+.+++||++|+++++.++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888888887655 3344443 467899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh--------------------CCCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHY--------------------APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~~vivv~nK~D~~~~ 125 (139)
+|+|||+++++|++.+ ..|+.++... .+++|++|||||+|+...
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9999999999999999 8999988653 147999999999999643
No 32
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=3.9e-29 Score=164.61 Aligned_cols=118 Identities=32% Similarity=0.553 Sum_probs=105.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
.+||+++|.+|+|||||+++++.+.+.+.+.++....+...+..++....+++||++|+++++.++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888778776566667778888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
|++++++++++ ..|+..+.+.. .++|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 99999999998 77888887653 6899999999999854
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=4.6e-29 Score=164.86 Aligned_cols=119 Identities=34% Similarity=0.628 Sum_probs=106.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||++++.++++...+.++.+..+ ...+..++..+.+++||++|++++...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888887655 445666777899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
|++++++++.+ ..|+..+.+.. ++.|+++||||+|+...+
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 99999999999 88999988765 579999999999996543
No 34
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=5.5e-29 Score=164.01 Aligned_cols=116 Identities=32% Similarity=0.605 Sum_probs=104.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||+++++.+.+.+.+.++.+... ......++..+.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999887777765443 455667888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|++++.+++.+ +.|+..+++..++.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999998 88999998877789999999999985
No 35
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=4.7e-29 Score=165.14 Aligned_cols=121 Identities=31% Similarity=0.641 Sum_probs=107.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|++|+|||||++++.++.|...+.++.+..+ ...+..++..+.+++||++|++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999988888887665 4566778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
|||++++++|..+ +.|+..+.+.. +++|+++||||+|+.+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 9999999999999 78999988764 679999999999997543
No 36
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=6.7e-29 Score=166.82 Aligned_cols=115 Identities=30% Similarity=0.656 Sum_probs=103.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||++||+.+.|.+.+.++.+..+ ...+..++..+.+++||++|++++..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988889987665 457778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcc
Q 032516 86 SLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLGKI 123 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~ 123 (139)
|++++++++++ ..|+..+++..+ ..| ++||||+|+.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 99999999999 889999887654 455 6889999984
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=7.7e-29 Score=168.76 Aligned_cols=116 Identities=31% Similarity=0.549 Sum_probs=103.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..+ +..+.+.+||++|++.++.++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888888887665 4456666 7789999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCcc
Q 032516 85 FSLISKASYENVAKKWIPELRHY-----APGVPIILVGTKLGKI 123 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~~vivv~nK~D~~ 123 (139)
||++++++|+.+ ..|+..+... ..++|+++||||+|+.
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999999999999 8898887653 2578999999999996
No 38
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-29 Score=161.67 Aligned_cols=122 Identities=33% Similarity=0.581 Sum_probs=112.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+|++++|+.|.|||+|+++|+..+|.++..-+++.++ .+.+.+.++.++++||||+||++|++....|++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 468999999999999999999999999999888999888 5567788999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
|||+++.++|+++ ..|+...+... +++.++++|||.|+...++
T Consensus 88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~ 131 (214)
T KOG0086|consen 88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE 131 (214)
T ss_pred EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh
Confidence 9999999999999 89999998876 7899999999999986554
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=9.6e-29 Score=162.89 Aligned_cols=119 Identities=35% Similarity=0.674 Sum_probs=106.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|+|||||+++|.++.+.+.+.++.+..+ ...+..++..+.+++||++|++++......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888887655 456777888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
|++++++|+.+ ..|+..+.... .+.|+++||||+|+...+
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 99999999999 78999887765 479999999999996544
No 40
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=8.6e-29 Score=162.25 Aligned_cols=117 Identities=35% Similarity=0.620 Sum_probs=105.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+++||++|+++++.++..++++++++++|||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777777788888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
++++++++.+ ..|+..+.+.. ++.|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 82 INSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999998 77877776653 5799999999999864
No 41
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=1.3e-28 Score=163.14 Aligned_cols=116 Identities=32% Similarity=0.572 Sum_probs=104.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999998888888876554 445556778899999999999999999899999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|+++++++..+ +.|+..+.+..+++|+++||||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 99999999999 88999998877799999999999996
No 42
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.1e-28 Score=163.13 Aligned_cols=117 Identities=28% Similarity=0.517 Sum_probs=104.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||+++++++.|...+.++.+..+...+..+...+.+++||++|++++..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877776666677788999999999999999998889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~ 124 (139)
++++++++.+ +.|+..+++.. +++|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 9999999998 77877776542 6799999999999965
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=1.1e-28 Score=163.03 Aligned_cols=120 Identities=34% Similarity=0.706 Sum_probs=106.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998887777776655 45667788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
||+++++++..+ ..|+..+.+.. ++.|+++++||+|+....
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 999999999999 77999988766 679999999999986543
No 44
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.8e-28 Score=163.02 Aligned_cols=119 Identities=57% Similarity=1.079 Sum_probs=107.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|+|||||+++|..+.+.+.+.++....+...+..++..+.+.+||++|++.+...+..++++++++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888776666677788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++++++|+.+.+.|...+++..++.|+++||||+|+...
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 999999999977899998877789999999999998643
No 45
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-29 Score=160.77 Aligned_cols=123 Identities=33% Similarity=0.604 Sum_probs=113.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|..|+|||+|+.||..+-|++....+++..+ -+++.++++++++++|||+||++|+++...|++.+|++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 3568999999999999999999999999999889998887 678889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
++||++-+.+|+-+ ..|+.++.++. ..+--++||||.|+.+.++
T Consensus 85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 99999999999999 99999999987 4556789999999975543
No 46
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=5.1e-29 Score=168.30 Aligned_cols=116 Identities=40% Similarity=0.689 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
||+++|.+|||||||+++|..+.|...+.++.+..+...+..++..+.+++|||+|+++++.++..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888777766777888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccc
Q 032516 88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIF 124 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~ 124 (139)
+++++|+.+ +.|++.+.... ++.|+++||||+|+..
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 999999998 78888876543 5799999999999964
No 47
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=1.3e-28 Score=167.42 Aligned_cols=121 Identities=32% Similarity=0.622 Sum_probs=108.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 3578999999999999999999999998877778876554 456667788889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++|+.+ ..|++.+....++.|+++||||+|+...
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 99999999999999 8899999887788999999999998643
No 48
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=1.3e-28 Score=161.74 Aligned_cols=117 Identities=34% Similarity=0.655 Sum_probs=104.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..+ +..+++++||+||++++...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999999888788876665 4455555 777899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+.+..+++|+++|+||+|+..
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9999999999998 889999887778999999999999864
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.6e-28 Score=162.20 Aligned_cols=121 Identities=32% Similarity=0.602 Sum_probs=106.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999998877777776544 4566778877899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
|||++++++++.+ +.|+..+.... +++|+++|+||+|+...+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 9999999999998 88999987754 689999999999997543
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=1.3e-28 Score=164.56 Aligned_cols=120 Identities=38% Similarity=0.622 Sum_probs=104.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL 73 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 73 (139)
..+||+++|++|||||||++++.++.+.+.+.++.+..+. ..+... +..+.+++||++|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 5689999999999999999999999999888888866553 334332 45688999999999999999999
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
+++++|++++|||+++++++..+ ..|+..+.... ++.|+++||||+|+...
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQ 135 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence 99999999999999999999999 88999887653 68999999999999643
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=1.5e-28 Score=163.50 Aligned_cols=117 Identities=34% Similarity=0.588 Sum_probs=104.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
||+++|.+|||||||+++|+.+.|...+.++.+..+ ...+..++....+++||++|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 899999999999999999999999999989987666 4566778888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
++++++++.+ ..|++.+.+.. .+.|+++||||+|+...
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 9999999998 78998875543 35789999999998543
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=1.8e-28 Score=161.57 Aligned_cols=118 Identities=33% Similarity=0.596 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||++++.++.+...+.++....+......++..+.+++||+||++++..++..++++++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998887787776667777788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
++++++++.+ ..|...+.+.. .+.|+++||||+|+...
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999998 77777776543 47899999999998643
No 53
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=2.8e-28 Score=160.41 Aligned_cols=119 Identities=34% Similarity=0.575 Sum_probs=105.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
.+||+++|++|+|||||+++++++.+...+.++....+......++..+.+++||+||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999988777777777666666778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
|++++++++.+ ..|+..+.+.. .+.|+++++||+|+...
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 99999999998 77887776643 57999999999998643
No 54
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=2.9e-28 Score=160.77 Aligned_cols=120 Identities=37% Similarity=0.635 Sum_probs=106.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++++..+.+.++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999998877778876655 5567778888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~~~ 125 (139)
|||++++++++.+ +.|+..+.+..+ +.|+++|+||+|+...
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999 789999887764 5999999999998643
No 55
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=3.3e-28 Score=161.56 Aligned_cols=121 Identities=31% Similarity=0.582 Sum_probs=105.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFI 82 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i 82 (139)
+.+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+++||++|+++++ .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999998877777776554 4566778888999999999999887 47888899999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++++++.+ ..|++.+.... .++|+++|+||+|+...+
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 125 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQI 125 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhc
Confidence 99999999999999 88998887654 679999999999987544
No 56
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=5e-28 Score=161.01 Aligned_cols=119 Identities=56% Similarity=0.999 Sum_probs=107.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+.||+++|++|||||||+++|.++.+.+.+.++....+...+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36999999999999999999999999888888887766666777888899999999999999988888999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|++++++++.+.+.|...+++..++.|+++|+||+|+..
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 999999999986779998887778899999999999864
No 57
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=2.2e-28 Score=160.83 Aligned_cols=118 Identities=42% Similarity=0.799 Sum_probs=108.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
||+++|+++||||||+++|.++.+.+.+.++.+.. +...+..++..+.+.+||++|++++...+..+++++++++++||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999888888444 46788889999999999999999999888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccccC
Q 032516 87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLGKIFCD 126 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~~~~ 126 (139)
+++++|++.+ ..|++.+....+ +.|++|+|||+|+...+
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred cccccccccc-ccccccccccccccccceeeeccccccccc
Confidence 9999999999 799999998886 79999999999998633
No 58
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=3.2e-28 Score=173.94 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=106.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-------------CeEEEEEEEeCCCccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~ 68 (139)
+...+||+++|+.|||||||+++|+++.|...+.+|++..+ ...+.++ +..+.++|||++|++.|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 45679999999999999999999999999888888887765 3445543 256889999999999999
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCcccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~~vivv~nK~D~~~~ 125 (139)
.++..++++++++|+|||++++++++.+ ..|++.+.... .++|++|||||+|+...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999 89999998752 25899999999999654
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=4.2e-28 Score=160.78 Aligned_cols=120 Identities=36% Similarity=0.668 Sum_probs=105.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
.+..+||+++|++|||||||+++|.++.+.+.+.++.+..+ ...+..++..+.+++||++|+++++.++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999999887777776654 45667788899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI 123 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~ 123 (139)
++|||++++++++.+ ..|...+.... +++|+++|+||+|+.
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999999999998 78888776532 468999999999985
No 60
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=3.6e-28 Score=159.75 Aligned_cols=118 Identities=33% Similarity=0.615 Sum_probs=104.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777776555 455667788889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
|++++.++..+ ..|+..++... +++|+++++||+|+...
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 99999999998 78988887654 78999999999999643
No 61
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=6.9e-28 Score=162.90 Aligned_cols=117 Identities=36% Similarity=0.625 Sum_probs=104.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+||+++|++|||||||+++|+++.+.. .+.++.+..+ ...+..++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 5677776665 45677888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
||++++.+++.+ ..|++.++...++.|+++|+||+|+..
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 999999999998 889999988767899999999999864
No 62
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=3.7e-28 Score=160.07 Aligned_cols=116 Identities=22% Similarity=0.580 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..+.+++|||+|++.+..++..++++++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888887665 456777888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC------CCCCEEEEeecCCcc
Q 032516 86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLGKI 123 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~------~~~~vivv~nK~D~~ 123 (139)
|++++++++.+ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99999999998 88999887764 368999999999986
No 63
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1e-27 Score=158.73 Aligned_cols=121 Identities=69% Similarity=1.164 Sum_probs=108.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|+|||||++++.++.+...+.++....+......++..+.+++||+||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999987777777776666667778888999999999999988888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
+++++++......|+..+....++.|+++|+||+|+..+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 99999999987889999988778999999999999976653
No 64
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=9.7e-28 Score=161.67 Aligned_cols=118 Identities=32% Similarity=0.592 Sum_probs=104.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877788877655 456677788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
|++++++|..+ ..|+..+.... ++.|++++|||+|+...
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNN 120 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence 99999999999 77999988765 56899999999998743
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=1e-27 Score=158.90 Aligned_cols=119 Identities=28% Similarity=0.606 Sum_probs=105.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|.+|+|||||++++.++.+...+.++.+.++ ...+..++....+.+||++|++++..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988777777766554 4556678888899999999999999988999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+++.. +++|+++|+||+|+..
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999998 88999887754 7899999999999873
No 66
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=5.6e-28 Score=164.38 Aligned_cols=111 Identities=30% Similarity=0.549 Sum_probs=101.8
Q ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH
Q 032516 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (139)
Q Consensus 12 iG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (139)
+|.+|||||||+++|+.+.+...+.++.+..+ ...+..++..+.+++||++|+++|+.++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888887665 45667788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 91 ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 91 ~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
++++.+ ..|++.+.+..+++|+++||||+|+.
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999 78999998877899999999999985
No 67
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=8.3e-28 Score=165.31 Aligned_cols=118 Identities=30% Similarity=0.486 Sum_probs=103.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+||+++|++|||||||+++|..+.|...+.++.+.++ ...+..++ ..+.+++||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888887554 45566644 578999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~~ 125 (139)
||++++++|+.+ +.|+..+.+.. .++|+++||||+|+...
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 999999999999 88999988764 34689999999999643
No 68
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.1e-27 Score=164.86 Aligned_cols=121 Identities=33% Similarity=0.596 Sum_probs=108.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+..+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+++||++|++++..++..+++++++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 3568999999999999999999999998877778887665 567778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++|+.+ ..|+..++... .++|+++||||+|+...
T Consensus 90 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 90 LVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred EEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 99999999999998 88999888765 57999999999998643
No 69
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=7.6e-28 Score=168.46 Aligned_cols=117 Identities=29% Similarity=0.510 Sum_probs=104.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|.+|||||||+++|+++.|...+.+++++.+...+.+++..+.+++|||+|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888888876666677788888999999999999999888888999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~----------~~~~~vivv~nK~D~~~ 124 (139)
++++++|+++ ..|++.+.+. ..+.|+++|+||+|+..
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 9999999998 7888877542 25799999999999964
No 70
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.5e-27 Score=158.40 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=105.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
.+.+||+++|++|||||||++||+.+.|. ..+.+|.+..+. ..+..++....+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999998 788888877663 5567788888999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.+++.+ ..|+..+... .++|+++|+||+|+...
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQ 123 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccc
Confidence 999999999999998 7788776432 47999999999999643
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=2.2e-27 Score=155.82 Aligned_cols=117 Identities=35% Similarity=0.595 Sum_probs=102.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||++++++.++...+.++.+..+ ...+..++..+++++||+||+++++.+...+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877777776554 556667787889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
|++++++++.+ ..|+..+.... .+.|+++++||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 99999999998 78888876654 4699999999999953
No 72
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1.2e-27 Score=158.03 Aligned_cols=117 Identities=29% Similarity=0.530 Sum_probs=101.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEEe
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 86 (139)
||+++|++|+|||||+++++.+.+.+.+.++....+...+..++..+.+++||+||++. +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999998887777777666666777888889999999999985 34456778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~ 125 (139)
++++++|+.+ +.|+..+.... .++|+++||||+|+...
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 9999999998 88988887753 48999999999998643
No 73
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=2.9e-27 Score=156.70 Aligned_cols=119 Identities=30% Similarity=0.530 Sum_probs=106.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|.+|+|||||+++|.++.+...+.++.+..+...+..++..+.+++||+||+++|..++..+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 68999999999999999999999998888888776667777788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
++++++++.+ ..|...+.+.. .+.|+++++||+|+...+
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 9999999998 77888876542 579999999999986543
No 74
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.9e-27 Score=162.21 Aligned_cols=119 Identities=32% Similarity=0.525 Sum_probs=102.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.. ++..+.+++||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999998887777776554 445555 4667899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
|||++++++|+.+ ..|+..+.+.. ...|+++||||+|+...
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 9999999999999 78988887653 35788999999999653
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=3.2e-27 Score=155.57 Aligned_cols=118 Identities=37% Similarity=0.634 Sum_probs=102.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+||+++|++|||||||++++..+ .+.+.+.++.+..+ ...+..+ +..+++.+||++|++.++.+...+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67778888876554 3444443 56789999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++++.+ +.|+..+....++.|+++|+||+|+...
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADK 122 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 99999999999998 8999998887678999999999999644
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.9e-27 Score=159.88 Aligned_cols=117 Identities=37% Similarity=0.727 Sum_probs=102.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+||+++|++|||||||++++.++.+.. .+.++.+..+. ..+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 56667665553 4567788889999999999999999889999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
||++++++++.+ ..|+..+.... .++|+++|+||+|+..
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 999999999998 78999888766 4799999999999963
No 77
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=4.1e-27 Score=161.37 Aligned_cols=124 Identities=28% Similarity=0.588 Sum_probs=108.7
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 79 (139)
|.....+||+++|++|+|||||++++....+...+.++.+..+ ...+..++..+.+++||++|++.+..++..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 6677789999999999999999999999998887777776655 445677888889999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++++|||++++++++.+ ..|+..+.... ++.|+++++||+|+...
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 99999999999999998 77888776554 68999999999999654
No 78
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=3.9e-27 Score=155.85 Aligned_cols=119 Identities=28% Similarity=0.429 Sum_probs=99.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||++++.++.+.+.+.+ ....+......++..+++++||++|++.++..+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 4899999999999999999999998765333 333334444566778899999999999888777778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++++++++.+.+.|.+.++...++.|+++|+||+|+....
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 9999999998668999888777789999999999996544
No 79
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=155.98 Aligned_cols=123 Identities=33% Similarity=0.624 Sum_probs=112.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+..+|++++|..=||||||+-||+.++|..+..+|..-.| .+.+.+.+...+++||||+||++|+.+-+-|++++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4679999999999999999999999999999888886555 677778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
+|||++|++||+.. +.|..+++... ..+.+++||||+|+++.+.
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ 135 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence 99999999999999 99999999876 6788999999999985543
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=6e-27 Score=153.97 Aligned_cols=117 Identities=39% Similarity=0.716 Sum_probs=103.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777777776554 456667788889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
|++++.+++.+ ..|+..+..+. +++|+++++||+|+..
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 99999999998 67999988766 7899999999999864
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=7.1e-27 Score=153.74 Aligned_cols=110 Identities=29% Similarity=0.410 Sum_probs=94.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||+++|+.+.|.+.+.++ ...+...+.+++..+.+.+||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999987765544 344556778888889999999999975 246788999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI 123 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~ 123 (139)
++++++|+++ ..|+..+.... +++|+++||||+|+.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 9999999999 77999887764 679999999999985
No 82
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=6.4e-27 Score=153.87 Aligned_cols=118 Identities=37% Similarity=0.673 Sum_probs=105.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+||+++|++|+|||||+++++++.+.+.+.++.+..+ ...+..++..+++.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998876677776554 56777888889999999999999998888899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
||+++++++..+ ..|+..+.... ++.|+++++||+|+..
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999999998 88988887765 7799999999999873
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1e-26 Score=157.66 Aligned_cols=117 Identities=47% Similarity=0.801 Sum_probs=95.4
Q ss_pred eeEEEEECCCCCCHHHHHH-HHHhCC-----CCCCCCCcee--eeeeEE--------EEECCeEEEEEEEeCCCcccccc
Q 032516 6 FIKCVTVGDGAVGKTCMLI-SYTSNT-----FPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 69 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~-~~~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 69 (139)
.+||+++|++|||||||+. ++.++. |...+.||++ ..+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 565543 4556677774 233322 25688899999999999985 3
Q ss_pred cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+...+++++|++++|||+++++||+.+...|++.+++..++.|+++||||+|+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 4566899999999999999999999995579999988778899999999999864
No 84
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=4.2e-27 Score=155.61 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=97.5
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (139)
|+++|++|||||||+++|.++.+...+.++.+... ..++....++.+||++|+++++.++..+++++|++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 78999999999999999999888777777776432 234455688999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 89 ~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++.++... +.|+..+....+++|+++|+||+|+..+.
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 99999998 67777776545789999999999986543
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=1.3e-26 Score=151.87 Aligned_cols=119 Identities=36% Similarity=0.684 Sum_probs=102.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|+|||||+++++++.+.+.+.++....+ ...+...+..+.+.+||++|++.+...++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988776666654443 445666777789999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
|++++++++.+ ..|+..++... .++|+++++||+|+....
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 99999999998 78988887765 479999999999997443
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=1.6e-26 Score=151.80 Aligned_cols=116 Identities=36% Similarity=0.717 Sum_probs=102.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988776677776555 344566777889999999999999988899999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI 123 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~ 123 (139)
|++++++++.+ ..|++.+.++. ++.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999998 67999888764 689999999999996
No 87
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=1.6e-26 Score=157.12 Aligned_cols=117 Identities=26% Similarity=0.478 Sum_probs=97.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 77 (139)
+||+++|.+|||||||+++|.++.|...+.++.+.. +...+..++..+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888877544 3456667888899999999997654321 2345789
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCccc
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLGKIF 124 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~~vivv~nK~D~~~ 124 (139)
+|++++|||++++++++.+ +.|++.+.+. .+++|+++||||+|+..
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 9999999999999999998 7888877654 36799999999999964
No 88
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=1.1e-26 Score=160.08 Aligned_cols=113 Identities=31% Similarity=0.461 Sum_probs=93.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|.+|||||||+++|+.+.|.. +.++.+..+... ....+.+.+||++|++.++.++..++++++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999864 466665443221 1245789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~ 124 (139)
++++++|+.+ +.|+..+.+. .+++|+++||||+|+..
T Consensus 77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999 5555555443 46799999999999965
No 89
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=5.1e-27 Score=158.89 Aligned_cols=120 Identities=36% Similarity=0.599 Sum_probs=110.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+|++++|.+|||||+|+.+|+.+.|.+.|.|++++.|...+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccc
Q 032516 85 FSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~-~-~~~~vivv~nK~D~~~~ 125 (139)
|++++++||+.+ +.+.+.+.+. . .++|+++||||+|+...
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 999999999999 7777777432 2 56899999999999863
No 90
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.2e-29 Score=159.83 Aligned_cols=132 Identities=38% Similarity=0.604 Sum_probs=115.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEE---------CCeEEEEEEEeCCCccccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVV---------DGSTVNLGLWDTAGQEDYNRLRPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~~ 74 (139)
..+|++.+|++||||||++.+|.+++|..+..+|.+.+++ +.+.+ .+..+.+++|||+||++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988874 33333 2356899999999999999999999
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc------------cCccccceeeecc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF------------CDPYFLLWFLFLS 137 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~------------~~~~~~~~~~~~s 137 (139)
++++=+++++||+++++||-+. ..|+..++.++ ++..++++|||+|+++ ++.++++||+..+
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 9999999999999999999999 99999998764 8889999999999984 4467888888643
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=1.9e-26 Score=152.77 Aligned_cols=117 Identities=33% Similarity=0.636 Sum_probs=101.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++|||||||++++.++.+.+.+.++.+..+ ...+..++..+.+++||+||++.+..++..+++++++++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998877777766544 455677888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~ 124 (139)
|+++++++++. ..|.+.+.... .++|+++|+||+|+..
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999999998 77887765543 2799999999999973
No 92
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=158.85 Aligned_cols=120 Identities=72% Similarity=1.216 Sum_probs=114.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+|+.++|+.++|||+|+..|..+.|...|.||.-+.|...+.++ +..+.+.+|||+||++|..+++..+.++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35799999999999999999999999999999999998888889995 99999999999999999999988999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
++|++.+++||+++.+.|+.++++++|+.|+++||+|.||.
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 99999999999999999999999999999999999999997
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=6.8e-27 Score=155.19 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=94.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|++|||||||++++..+.+.. +.++.+..+. .+. ...+++++||++|+++++..+..+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 457899999999999999999999877753 4566654443 222 345789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~ 124 (139)
|||++++.++.++.+.|.+.+... .+++|+++|+||+|+..
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 999999999999855454555443 36799999999999864
No 94
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.1e-26 Score=155.17 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=95.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+..+||+++|++|||||||++++..+.+. .+.+|.+..+. .+.. ..+.+.+||++|++.++.++..++++++++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999888774 35666655442 2233 34789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++++..+.|...+.+. .+++|++||+||+|+.++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999999999999844444444432 367999999999999754
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=5.4e-26 Score=153.19 Aligned_cols=119 Identities=52% Similarity=0.880 Sum_probs=104.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+.|++++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+....+.+++.+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 36999999999999999999998888777777766666556677888889999999999988877777889999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|+++.++|+++...|+..+++..+++|+++||||+|+..
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 999999999996689999988778899999999999854
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=1.1e-26 Score=155.86 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=94.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.++||||||++++..+.+. .+.++.+..+. .+ +...+.+++||+||+++++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34689999999999999999999988775 35666654432 23 3345789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++.++.+.+...+.+. .+++|++|++||+|+..+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 999999999998844444444332 268999999999998754
No 97
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.94 E-value=1.8e-26 Score=151.90 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=92.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|.++||||||++++..+.+.. +.++.+.... .+.. ..+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 589999999999999999998888863 5666654432 2333 45789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
++++.+++.+.+.|.+.+... ..+.|+++++||+|+...
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 999999999844444444432 257899999999999644
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=9.3e-26 Score=149.23 Aligned_cols=125 Identities=32% Similarity=0.608 Sum_probs=106.2
Q ss_pred CCC-cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 032516 1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (139)
Q Consensus 1 ~~~-~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 78 (139)
|.. ...+|++++|++|+|||||++++..+.+.+.+.++.+..+ ...+..++..+.+.+||++|++.++..+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 443 4569999999999999999999998888777666665444 44566788888999999999999999888999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 79 DVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
|++++|||++++.+++.+ ..|+..++... .+.|+++++||+|+...+
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 999999999999999998 78998887765 479999999999986443
No 99
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=8e-26 Score=155.00 Aligned_cols=120 Identities=31% Similarity=0.574 Sum_probs=102.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|.+|||||||+++|.+..+. .+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999998874 4566666554 4456677778899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
|||++++++|+.+.+.|...+.... .+.|+++|+||+|+...
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999667877776543 46899999999998643
No 100
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=9.4e-26 Score=155.01 Aligned_cols=122 Identities=30% Similarity=0.522 Sum_probs=108.3
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
.+...+|++++|++|||||||+++++.+.+.+.+.++.+..+ ...+..++..+.+++||++|++.+...+..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 456789999999999999999999999999888888887665 3445567888999999999999999888899999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++++||+++..++..+ ..|+..+.+..+++|++++|||+|+..
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 9999999999999998 889999887778899999999999853
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=7.3e-26 Score=148.69 Aligned_cols=117 Identities=34% Similarity=0.589 Sum_probs=103.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|+|||||+++++.+.+...+.++....+......++..+.+.+||+||++.+...+..+++.+++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999988887888776666677788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
++++.++..+ ..|...+... ..++|+++|+||+|+..
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999998 6676666654 25899999999999865
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=3.1e-26 Score=153.85 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=95.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|||||||++++..+.+.. +.+|.+..+. .+. ...+.+++||++|++.++..+..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 446899999999999999999999888764 4566654432 233 345789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++....+.+.+.+... ..++|+++|+||+|+..+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 999999999999854455444432 257899999999998653
No 103
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.94 E-value=1.1e-25 Score=155.47 Aligned_cols=116 Identities=27% Similarity=0.392 Sum_probs=96.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL 83 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~ 83 (139)
+||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++....+.+||++|++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 56666665 4446677788888999999999998 233445566 8999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
|||++++++|+.+ ..|+..+.+.. .+.|+++|+||+|+...
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence 9999999999998 78888887654 57999999999998644
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=1.8e-25 Score=145.49 Aligned_cols=116 Identities=42% Similarity=0.803 Sum_probs=103.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+||+++|++++|||||++++.+..+...+.++.+..+ ......++....+.+||+||++.+...+..+++++|++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777766554 456666777889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~ 123 (139)
|++++++++.+ ..|+..+.... ++.|+++++||+|+.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999998 77998888776 789999999999995
No 105
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=1.3e-25 Score=146.83 Aligned_cols=116 Identities=37% Similarity=0.662 Sum_probs=101.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
||+++|++|||||||+++++...+...+.++....+......++..+.+++||+||++.+......+++.++++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 69999999999999999999988888877777755666666777788999999999999998888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
++++++.++ ..|...+.... .+.|+++++||+|+..
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 999999998 66766666554 4899999999999875
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=1.4e-25 Score=152.42 Aligned_cols=116 Identities=28% Similarity=0.472 Sum_probs=101.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
||+++|++|||||||+++|+.+.+...+.++........+.+.+..+.+++||++|+..+..++..+++++|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999887777776555555667778888999999999999998888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
+++.+++.+ ..|+..+.... .++|+++|+||+|+..
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 999999998 78888776654 4799999999999864
No 107
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.94 E-value=1.8e-25 Score=140.18 Aligned_cols=114 Identities=33% Similarity=0.559 Sum_probs=87.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
||+++|++|||||||++++++..+.. .+.+..+..+ ............+.+||++|++.+...+...++++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 1122222222 23445566666699999999999888877789999999999
Q ss_pred EeCCCHHHHHHHHH--HHHHHHhhhCCCCCEEEEeecCC
Q 032516 85 FSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLG 121 (139)
Q Consensus 85 ~d~~~~~s~~~~~~--~~~~~l~~~~~~~~vivv~nK~D 121 (139)
||++++++++.+.+ .|+..++...+++|+++||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999733 25666666667899999999998
No 108
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=147.67 Aligned_cols=122 Identities=29% Similarity=0.488 Sum_probs=106.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEE-ECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+++++++|++-+|||||+++|..++|.+-.+||.+.++ .+-+. -++..+++++|||+||++|+++.+.|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 578999999999999999999999999998899998776 44333 4678899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCC-EEEEeecCCccccCc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA--PGVP-IILVGTKLGKIFCDP 127 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~-vivv~nK~D~~~~~~ 127 (139)
+|||+++.+||+.+ +.|+.+.+.+. |+.+ .++||+|+|+...++
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 99999999999999 99999877653 5555 469999999985543
No 109
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=1e-25 Score=149.35 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=94.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
+|+++|++|||||||++++.+. +...+.++.+.. ...+.. ....+++||+||++.++.++..++++++++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 666667776643 233333 347799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
+++++++++ ..|+..+.+.. .+.|+++|+||+|+..+.
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999998 67777765432 579999999999997655
No 110
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=2.6e-25 Score=148.66 Aligned_cols=117 Identities=31% Similarity=0.478 Sum_probs=101.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
.||+++|++|+|||||++++....+...+.++....+......++..+.+.+||+||+++++..+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999888777777766666677778888889999999999999888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
+++..+++.+ ..|+..+.+.. .+.|+++++||+|+..
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 9999999999 55555554432 5789999999999864
No 111
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=2.1e-25 Score=148.05 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=91.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
||+++|+++||||||++++.++.+.. +.+|.+..+. .+ +...+.+++||+||++.++..+..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987654 5666654442 23 33457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
++++++.++ ..|+..+.+. ..+.|+++++||+|+..+
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 999999998 5565555432 256899999999999643
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=5.9e-25 Score=147.67 Aligned_cols=117 Identities=23% Similarity=0.354 Sum_probs=95.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+||+++|.+|||||||++++..+.+... .++.+... ...+.. ++..+.+++||++|+++++.++..++++++++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 68999999999999999999999887644 45554333 223332 4466889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 82 v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 82 VVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 9999999999888 66776665432 5799999999999864
No 113
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=2.3e-27 Score=148.01 Aligned_cols=126 Identities=32% Similarity=0.643 Sum_probs=109.3
Q ss_pred EEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 10 VTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 10 ~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
+++|++++|||+|+-||-++.|.. ...++.+..++ +.+..++.++++++|||+||++|++....|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999999888865 45678888884 5667899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc------------Cccccceeeec
Q 032516 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC------------DPYFLLWFLFL 136 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~------------~~~~~~~~~~~ 136 (139)
.+..||+++ +.|+.++.++. ..+.++++|||||+... +.++++|++..
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmets 141 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETS 141 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceecc
Confidence 999999999 99999999987 56889999999999632 24566776654
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=5.4e-25 Score=144.46 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=91.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+|+++|++|||||||++++.+..+ ...+.++.+.... .. ......+++||+||+++++.++..++++++++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 589999999999999999998753 4556666654322 12 2345789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHY----APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~----~~~~~vivv~nK~D~~~~ 125 (139)
++++.++... ..|+..+.+. ..+.|+++|+||+|+..+
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999887 6666665432 257999999999999754
No 115
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.3e-25 Score=140.42 Aligned_cols=122 Identities=30% Similarity=0.593 Sum_probs=110.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+..+|.+++|+-|+|||+|+++|...+|...-..+++.++ ++.+.+.+.++++++|||+||++|+.....|++++.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 4679999999999999999999999999877667777777 677889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++.++..+.+ ..|+...+..- |+..++++|||.|++..+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhcc
Confidence 99999999999999 88988877664 888999999999998554
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=1.6e-24 Score=144.19 Aligned_cols=116 Identities=17% Similarity=0.270 Sum_probs=92.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|||||||++++....+. .+.++.+.. ...+..+ ...+.+||+||++.++..+..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45689999999999999999999987543 445555432 2333444 4679999999999998888999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh--hCCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRH--YAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~--~~~~~~vivv~nK~D~~~ 124 (139)
|||++++.++... ..|+..+.. ...++|+++|+||+|+..
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 9999999999988 555555532 226899999999999864
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.92 E-value=1.2e-24 Score=145.12 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=93.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|+|||||++++..+.+.. +.++.+..+. ....+ ...+.+||+||++.+...+..+++++|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 346899999999999999999999988765 4566554432 23333 4779999999999999889999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
|+|+++++++....+.+...+.... +++|+++++||+|+..
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9999999999887444444444322 5799999999999864
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=2e-24 Score=141.72 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=90.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
||+++|++++|||||++++..+.+.. +.++.+.... .+. ....++++||+||++.++.++..+++.++++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877653 3455543332 232 3457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 88 ISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
+++.++....+.|...++.. ..+.|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 99998887755555555433 257999999999998643
No 119
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=147.79 Aligned_cols=123 Identities=37% Similarity=0.645 Sum_probs=107.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|++|+|||||+++|..+.+...+.++.+..+. .........+++.+||++|+++++.+++.++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 3489999999999999999999999999888888776663 344444447899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
+||.++..++.++.+.|...+.... .+.|+++++||+|+.....
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 9999997777777799999999887 4799999999999986643
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=7.7e-24 Score=138.87 Aligned_cols=113 Identities=20% Similarity=0.332 Sum_probs=89.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
+|+++|++|||||||+++|..+.+... .++.+..+ ..+.. ...+.+.+||++|++.+...+..+++++|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999887543 45554332 22322 3457899999999999988888899999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccc
Q 032516 88 ISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l-~~~~-~~~~vivv~nK~D~~~ 124 (139)
+++.++... ..|+..+ +... .+.|+++|+||+|+..
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 999999988 4455444 3322 5899999999999854
No 121
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-25 Score=146.22 Aligned_cols=122 Identities=33% Similarity=0.559 Sum_probs=113.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+.-+|++++|..++||||+++||+.+-|...+..+++..+ ...+.++.+.+.+++||++||++|..+.+.|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 4569999999999999999999999999999999998877 667778888888999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+||+-+|..||+.. ..|.+.+......+|.++|-||+|+.+..
T Consensus 98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 99999999999998 89999999988999999999999998544
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=1.7e-23 Score=140.73 Aligned_cols=116 Identities=17% Similarity=0.318 Sum_probs=90.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|.+|+|||||++++..+.+.. +.++.+.. ...+..+ .+++.+||+||++.++..+..++++++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999887643 23443322 2223333 3679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh-h-CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRH-Y-APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~-~-~~~~~vivv~nK~D~~~ 124 (139)
|+|+++++++... ..++..+.+ . ..+.|+++|+||+|+..
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999999888 444444432 2 26799999999999863
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.9e-23 Score=136.85 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=89.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
||+++|.+|||||||++++++..+ ..+.++.+... ..+.++ .+.+.+||+||++.++..+..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999874 33445544332 223333 46799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
++++++... ..|+..+... ..+.|+++++||+|+..
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 999999998 5555554432 26899999999999975
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.90 E-value=2.5e-23 Score=139.00 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=95.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
..+.+||+++|.+|+||||+++++..+.+.. ..||.+.. ...+..++ ..+.+||.+|+..++..|+.++++++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4678999999999999999999998765432 34444332 22344444 67999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|+|.++.+.+.+..+.+.+.+.... .+.|+++++||+|+..+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 99999999999998666666665432 68999999999998754
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.90 E-value=4e-23 Score=136.36 Aligned_cols=114 Identities=23% Similarity=0.346 Sum_probs=87.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
||+++|++|+|||||++++..... ...+.++.+..+ ..+..+ ...+.+||+||++.+..++..++++++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 689999999999999999976422 122333443333 233344 46799999999999999889999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
++|+|+++++++... ..|+..+.+. ..+.|+++++||+|+...
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999888 5565555443 257999999999998644
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.90 E-value=6e-23 Score=133.61 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=92.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
.|+++|++|+|||||++++.+..+...+.++.+..+. .+.... ..+.+||+||++.++..+..+++.+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 3789999999999999999999988887777765543 233333 6799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 88 ISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
++..++......+...+... ..+.|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 99999988734344433332 257899999999998654
No 127
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=1e-22 Score=137.26 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=91.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+..||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ ..+.+||+||++.++..+..++++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999988764 445555432 23344444 578999999999988888889999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKI 123 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~ 123 (139)
|+|+++.+++... ..|+..+.+. ..+.|+++++||+|+.
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 9999999999887 4555554432 2579999999999986
No 128
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=6.3e-23 Score=139.98 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=91.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEe
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS 86 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 86 (139)
+|+++|+++||||||++++..+.+...+.++............+....+.+||+||+.+++.....+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988766554432221121221123456799999999999998888889998 99999999
Q ss_pred CCCH-HHHHHHHHHHHHHHhh---hCCCCCEEEEeecCCccccCc
Q 032516 87 LISK-ASYENVAKKWIPELRH---YAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~l~~---~~~~~~vivv~nK~D~~~~~~ 127 (139)
+++. +++....+++++.+.. ..+++|+++++||+|+..+.+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9987 7787775666555443 236899999999999976554
No 129
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.89 E-value=3e-22 Score=128.72 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=94.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.++|+++|..|+||||++++|.+.. .+...|+.+.... + ...+.+++++||.+||...++.|+.||..+|++|.
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-t--l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-T--LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-E--EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 457999999999999999999999876 3333444443322 2 23455779999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~ 123 (139)
|+|.+|+..++++...+-..+.... ...|+++++||+|++
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 9999999999998666666665433 679999999999997
No 130
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-22 Score=133.31 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=101.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.....+|+++|..++||||++.++-.+++... .||++.... .+.+. .+.+.+||.+||++++..|+.|+++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 45679999999999999999999988876554 677765432 23333 578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
+|+|.+|.+.+.+..+++...+.+.. .+.|+++.+||+|++.+-+
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 99999999999999788888877654 6899999999999975543
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.88 E-value=1.4e-21 Score=126.69 Aligned_cols=120 Identities=38% Similarity=0.550 Sum_probs=98.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+||+++|.+|+|||||++++....+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887666666665554 33455677668899999999999988888888999999999
Q ss_pred EeCCCH-HHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccc
Q 032516 85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~~~ 125 (139)
+|.... .++......|...+..... +.|+++++||+|+...
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence 999877 7777764477777766554 8999999999999653
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=4.8e-21 Score=127.12 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=90.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+|++++|++|+|||||++++.+..+.. +.++.+.. ...+..++ ..+.+||++|+..+...+..++++++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 457999999999999999999999876542 33444422 22333443 568999999999888888888999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~ 125 (139)
|+|+++..++......+...++.. ..++|+++++||+|+...
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 999999999988744444444332 257999999999998653
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=2.6e-21 Score=129.04 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=83.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCce------eeeee-E--EEEE---CCeEEEEEEEeCCCccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~-------~~~~~~~~~------~~~~~-~--~~~~---~~~~~~~~i~D~~g~~~~~ 68 (139)
+|+++|++++|||||+++|++.. +...+.++. +..+. . ...+ ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999999742 222222221 11221 1 1222 5667889999999999999
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.....+++++|++++|||+++..+.... +.|.... . .++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcC
Confidence 8888899999999999999987766665 5554332 2 46899999999998643
No 134
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=2.7e-21 Score=131.01 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=84.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------Cceeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 70 (139)
..+|+++|.+++|||||+++|+. +.+...+. .+.+... .....+......+++|||||+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999997 55544321 1122222 222334445678999999999999999
Q ss_pred ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
...+++++|++++|||+++.. +... ..++..+.. .++|+++++||+|+...
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 999999999999999998742 2222 344444433 47899999999999643
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=6.5e-21 Score=126.00 Aligned_cols=117 Identities=20% Similarity=0.145 Sum_probs=80.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 79 (139)
+|+++|.+|+|||||++++.+........+ +........+..++. ..+.+|||||+.. .+.+...+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999987543211111 111111112222332 4699999999742 22233333 34599
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516 80 VFILAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~ 126 (139)
++++|+|++++ ++++.+ ..|.+.+.... .+.|+++|+||+|+....
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 130 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEE 130 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence 99999999999 788888 78888887654 468999999999986433
No 136
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=4.9e-22 Score=125.80 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=101.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
.+.+.++|..++|||||++....+.+.+.-.|+.+...+ .++...+.+.+||.|||-+|+++|+.|+++++++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 467899999999999999999998888777777765433 33455578999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
|+.+++.+...++++.+.+.+.+ .++|++++|||.|++.+
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 99999999888888888887654 78999999999999744
No 137
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2.1e-20 Score=123.39 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=78.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccccc---------cccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYR 76 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------~~~~ 76 (139)
.+|+++|++|+|||||++++.+..+.....+ ++....... .......+.+|||||+........ ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 3799999999999999999999876432111 111111111 223346899999999853211100 0112
Q ss_pred CccEEEEEEeCCCHHHH--HHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 77 GADVFILAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|++++|+|+++..++ +.. ..|+..++...++.|+++|+||+|+...+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFE 129 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence 35899999999987654 554 67888887655689999999999996544
No 138
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-20 Score=118.34 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=99.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.++|+.+|..++||||++.++.-+.. ....||++... .. +..+.+++++||.+||+..+..|..|+.+..++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv-et--VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeE-EE--EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 4568999999999999999999987663 23355555432 23 34555789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
|.|..+.+.+++.++++...+.+.. .+.++++.+||+|++.+..
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK 135 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC
Confidence 9999999999999888888887654 6899999999999986653
No 139
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.84 E-value=2.2e-20 Score=127.34 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=83.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRP 72 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~ 72 (139)
+..++|+++|++|||||||++++.+..+.... .++.. .....+...+. ..+.+|||||.... ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD-PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc-ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 34589999999999999999999987643221 22222 12223333332 26899999997421 1111
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
..+..+|++++|+|++++.++... ..|.+.+.... .+.|+++|+||+|+....
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 125689999999999999888876 67777776654 578999999999996544
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=3.9e-20 Score=121.37 Aligned_cols=110 Identities=20% Similarity=0.160 Sum_probs=75.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhC---CCCCCCCCc--eeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.|+++|.+|+|||||++++.+. .+.+.+.+. .+..+ ....... ...+.+|||||++++......+++++|+++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 6899999999999999999863 333222222 22222 2233331 357999999999988766667788999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|+|+++ +++.+.+ . .++.. ...|+++++||+|+...
T Consensus 80 ~V~d~~~~~~~~~~~~~-~----~~~~~-~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 80 LVVAADEGIMPQTREHL-E----ILELL-GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEEECCCCccHhHHHHH-H----HHHHh-CCCcEEEEEECccccCH
Confidence 9999987 3444333 1 22221 23489999999999643
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.84 E-value=8e-20 Score=117.16 Aligned_cols=115 Identities=43% Similarity=0.742 Sum_probs=90.3
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCC
Q 032516 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (139)
Q Consensus 11 iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (139)
++|++|+|||||++++..... .....++.................+.+||+||+..+.......++.++++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4444444433345555556667889999999999888777888899999999999999
Q ss_pred HHHHHHHHHHH--HHHHhhhCCCCCEEEEeecCCccccC
Q 032516 90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 90 ~~s~~~~~~~~--~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+.++... ..| .........+.|+++++||+|+....
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 9999988 554 22233344789999999999987544
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=8.2e-20 Score=120.44 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=82.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
.|+++|.+|+|||||++++....+...+.+...... ...+..+ .....+.+|||||++.+..++...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999999887655433332222 2233332 23567999999999998888888889999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|+++...-... ..+..++. .+.|+++|+||+|+...
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccc
Confidence 99874322211 12223333 46899999999998643
No 143
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=1.2e-19 Score=121.35 Aligned_cols=96 Identities=34% Similarity=0.547 Sum_probs=84.1
Q ss_pred CCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q 032516 29 NTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY 107 (139)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~ 107 (139)
+.|.+.+.+|++..+ ...+.+++..+++.+|||+|+++++.++..+++++|++++|||++++++|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 467778888987666 55677889999999999999999999999999999999999999999999999 7898888655
Q ss_pred C-CCCCEEEEeecCCcccc
Q 032516 108 A-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 108 ~-~~~~vivv~nK~D~~~~ 125 (139)
. +++|+++||||+|+...
T Consensus 82 ~~~~~piilVgNK~DL~~~ 100 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDL 100 (176)
T ss_pred cCCCCeEEEEEECcccccc
Confidence 4 67899999999999643
No 144
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=2.3e-19 Score=134.66 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=84.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 74 (139)
..+||+++|.+|+|||||+|++++... ...+..++.+.....+..++. .+.+|||||+.++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998653 333333333333445556654 5799999998654432 2356
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+...
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc
Confidence 7899999999999988876653 6655543 47899999999998643
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.82 E-value=1.3e-19 Score=132.51 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=84.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 74 (139)
..++|+++|.+|+|||||+|++.+..... ....++-+.....+...+. ..+.+|||+|.. .|+... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 45899999999999999999999876432 2222222223445555332 368999999972 122222 24
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
++++|++++|+|++++.+.+.+ ..|.+.++... .+.|+++|+||+|+..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 7789999999999999888776 66777666654 5789999999999864
No 146
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=2.7e-19 Score=130.46 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=78.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCccc-cccccc-------
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP------- 72 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~------- 72 (139)
+.+..+|+++|.+|||||||++++++..+... ...++.......+..++ .++.+|||||+.+ +..+..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 34567999999999999999999998876421 11111111222334444 4689999999853 332222
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..++++|++++|+|.++ ++......|++.++.. +.|.++|+||+|+..
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~ 174 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIES 174 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcc
Confidence 24678999999999754 4555545567666653 467788999999864
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1.5e-19 Score=136.96 Aligned_cols=114 Identities=22% Similarity=0.270 Sum_probs=80.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceee-eeeEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 74 (139)
+..+|+++|.+|||||||++++++..... ...+.... .....+..++. .+.+|||||++. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 45799999999999999999999865421 22222222 22333444444 589999999763 22334556
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++.+|++++|||++++.+... +.+.+.++. .+.|+++|+||+|+..
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDER 160 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCc
Confidence 889999999999998765543 455666654 5799999999999864
No 148
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=4.3e-20 Score=119.03 Aligned_cols=96 Identities=23% Similarity=0.194 Sum_probs=69.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI 82 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i 82 (139)
||+++|++|||||||+++|.+..+. +.++... .... .+||+||+. .++.+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 2222221 1111 689999983 2343333 478999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||++++.++.. ..|...+ ..|+++|+||+|+..
T Consensus 68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAE 102 (142)
T ss_pred EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCC
Confidence 9999999998765 2344432 249999999999864
No 149
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.80 E-value=2.5e-19 Score=114.65 Aligned_cols=117 Identities=26% Similarity=0.573 Sum_probs=105.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+||.++|++..|||||+-+|..+.+.+.+..+.+..+ .+++.+.+..+.+.+||.+|++++..+.+-..+++-++++.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 58999999999999999999999999877777877766 67788899999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
||++.+++++.+ ..|++.-+..+...-=++||+|.|+.
T Consensus 100 FDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 100 FDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred EecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhh
Confidence 999999999999 99999988877555557899999975
No 150
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=2.2e-19 Score=138.90 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=87.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCce------eeeee-E--EEEE---CCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~-------~~~~~~~~~------~~~~~-~--~~~~---~~~~~~~~i~D~~g~~ 65 (139)
+..+|+++|+.++|||||+++++... +...+..+. +.... . .+.+ ++..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35789999999999999999998742 222222221 22221 1 1222 4566899999999999
Q ss_pred cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|......+++.+|++++|+|+++..+.+.. ..|...+. .++|+++|+||+|+...+
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~ 138 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD 138 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC
Confidence 9998888999999999999999987777766 55554443 468999999999997543
No 151
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=9.1e-19 Score=127.28 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=83.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccccc---cccCc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPL---SYRGA 78 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~ 78 (139)
..|.++|.||||||||++++.+.+-. ..+..|+-......+.+. ....+.+||+||.-+ ...+... .++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 56899999999999999999975422 222223222222233332 223589999999642 1223333 34578
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516 79 DVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~ 126 (139)
+++++|+|+++.++++.+ +.|..++..+. .+.|+++|+||+|+...+
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 999999999988888888 88999998764 378999999999986444
No 152
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=8.8e-19 Score=131.93 Aligned_cols=114 Identities=24% Similarity=0.222 Sum_probs=82.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 74 (139)
..+||+++|.+|+|||||+|++++... ......++.+.....+..++ ..+.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 358999999999999999999998764 22222333333344555555 45899999998754432 2236
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++++|++++|+|++++.+++.. +.|.. ..+.|+++|+||+|+....
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccc
Confidence 7889999999999998877765 44443 3578999999999997543
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=9.6e-19 Score=132.61 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=82.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR- 71 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 71 (139)
..+||+++|.+|+|||||++++++..+. .....++.+.....+..++.. +.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 222223322334455566654 6899999953 222222
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+++++|++++|+|++++.++..+ + ++..+.. .+.|+++|+||+|+..
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~-~-~~~~~~~--~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ-R-VLSMVIE--AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECcccCC
Confidence 2357899999999999998888776 3 4555544 5799999999999964
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=1.3e-18 Score=113.10 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=77.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 76 (139)
++|+++|++|+|||||++++...... .....+...........+ ...+.+|||||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987542 122222222222333333 356899999997655322 223567
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|++++|+|++++.+.... +.+.. ..+.|+++|+||+|+....
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCcc
Confidence 89999999999987776665 33332 3579999999999997544
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.79 E-value=1.2e-19 Score=123.32 Aligned_cols=116 Identities=22% Similarity=0.154 Sum_probs=74.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLR 71 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 71 (139)
+...++|+++|.+|+|||||++++.+..+...+.+..... ....... .+.+||||| ++.++..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3457899999999999999999999877654444433221 1222222 489999999 45666655
Q ss_pred ccccc----CccEEEEEEeCCCHHHHH---------HHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 72 PLSYR----GADVFILAFSLISKASYE---------NVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 72 ~~~~~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
..++. .++++++|+|.++...+. .....+...+.. .++|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCc
Confidence 55553 356788888875432210 011222333333 47999999999998643
No 156
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=9.9e-19 Score=115.07 Aligned_cols=120 Identities=29% Similarity=0.466 Sum_probs=106.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
.+|++++|..|.||||+++|.+.+.|...+.++++......+...+ ..+.+..|||.|||.+......++-+..+.++.
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 7899999999999999999999999999999998776654444333 359999999999999999999999899999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
||++..-...+. ..|...+.+.+.|+||++.|||.|.....
T Consensus 90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc
Confidence 999999999998 88999998888899999999999986444
No 157
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=9.5e-19 Score=117.12 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=77.9
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCcc----------ccccc
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE----------DYNRL 70 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~----------~~~~~ 70 (139)
+..+..+|+++|.+|+|||||++++.+..+...+.++.+..... ....++ .+.+||+||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 45678999999999999999999999876544433333322211 112232 58999999953 23333
Q ss_pred ccccccC---ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 71 RPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
...+++. ++++++|+|++++-+..+. .++..+.. .+.|+++++||+|+...
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCH
Confidence 3445543 5799999999875444443 33444444 36899999999998643
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.78 E-value=2.7e-18 Score=112.00 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=75.4
Q ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc------cccccc--CccEE
Q 032516 11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR--GADVF 81 (139)
Q Consensus 11 iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~~ 81 (139)
++|.+|+|||||++++.+..+...+.+..... ....+..++ ..+.+|||||+..+... ...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999999876443333332222 233445554 46899999999876642 445554 89999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++|+|+++++... .+...+.+ .+.|+++|+||+|+...+
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKR 117 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhcccc
Confidence 9999998764422 33444443 468999999999996543
No 159
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.78 E-value=3e-18 Score=108.13 Aligned_cols=121 Identities=22% Similarity=0.344 Sum_probs=97.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+-+||+++|..++|||||++++...+.. .-.+|.+.. .+.+.+++. ..+++||.+||...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEEE
Confidence 46799999999999999999999876532 223443322 344444543 689999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~ 127 (139)
|.|.+|...|+++.+.+.+.+.... ...|+.+..||+|+..+.+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~ 136 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK 136 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc
Confidence 9999999999999777777776543 6799999999999985443
No 160
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.2e-18 Score=121.36 Aligned_cols=115 Identities=19% Similarity=0.114 Sum_probs=81.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------CCCC--C------ceeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFP--------TDYV--P------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~--------~~~~--~------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 70 (139)
+|.++|+.|+|||||+++++...-. .... . ..+... ...........++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863211 0000 0 001111 112333445578999999999999888
Q ss_pred ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
...+++.+|++++|+|+++..... . +.++..+++ .++|+++++||+|+..++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~-~~~~~~~~~--~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-T-RILWRLLRK--LNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-H-HHHHHHHHH--cCCCEEEEEECccccCCC
Confidence 888999999999999998765432 2 455666555 468999999999998654
No 161
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=2.6e-18 Score=113.92 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=76.8
Q ss_pred EECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEEE
Q 032516 11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLR---PLSYRGADVFI 82 (139)
Q Consensus 11 iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~i 82 (139)
++|++|||||||++++.+.... ..+..++.......+..++ ...+.+||+||... .+.+. ...++++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987642 2222222222222233331 34689999999742 22222 23467899999
Q ss_pred EEEeCCCH------HHHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~~vivv~nK~D~~~~ 125 (139)
+|+|++++ .++.+. +.|...+.... .+.|+++|+||+|+...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 99999988 577776 66766665432 37999999999999643
No 162
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=1e-18 Score=131.28 Aligned_cols=123 Identities=25% Similarity=0.391 Sum_probs=99.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...++|+++|+.|+|||||+..++.+.|.+. .|.......-........+...+.|++..+.-+......+++++++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4679999999999999999999999998765 333333333223444555668999998776655555678899999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccCc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~~ 127 (139)
+|+++++++++.+..+|++.+++.. .++|||+||||+|......
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 9999999999999999999999987 7899999999999875543
No 163
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=2.2e-18 Score=122.29 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=75.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-c-------cccccccC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG 77 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~-------~~~~~~~~ 77 (139)
+|+++|.+|||||||+|++++.++.. ....++.. ....+...+ ..++.+|||||..... . ....++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999976532 11222222 222333222 2468999999975421 1 12345789
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|++++|+|+++..+.+ +.++..++. .+.|+++|+||+|+..
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKF 121 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCC
Confidence 99999999998876554 345555554 4689999999999963
No 164
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.78 E-value=8.8e-18 Score=107.30 Aligned_cols=120 Identities=28% Similarity=0.398 Sum_probs=97.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccc-cccccccccCccE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~ 80 (139)
+..|++++|..++|||+++.+++.+.-.+ ...+|+++.|...+..+ +..-.+.++||.|.... ..+...|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999998765433 45677888886666543 44567999999998776 5577889999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
+++||+..+++||+.+ +.+-.++.+.. ..+||++++||+|+.+.
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccc
Confidence 9999999999999988 66666666543 56999999999999543
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=3e-18 Score=111.53 Aligned_cols=112 Identities=23% Similarity=0.235 Sum_probs=76.3
Q ss_pred EEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 032516 10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (139)
Q Consensus 10 ~iiG~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 79 (139)
+++|.+|+|||||++++.... +.....+++..........++ ..+.+|||||...+.. .....++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999864 222322333222233344444 5699999999987554 2344678899
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
++++|+|..+..+.... .+.+.+++ .+.|+++|+||+|+...++
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~ 122 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEED 122 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHH
Confidence 99999999765444332 33444444 3599999999999976544
No 166
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.77 E-value=6.9e-18 Score=130.22 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=85.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+..+|+++|++++|||||++++....+...+.+.+.... ...+..++. ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3568999999999999999999998877655443332222 233444332 16899999999999999888899999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|+|+++...-+.. +.+ ...+. .++|+++++||+|+...+
T Consensus 164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~ 203 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEAN 203 (587)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCC
Confidence 99998874322222 222 22222 478999999999996543
No 167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=1.9e-18 Score=118.75 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=79.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCCce------eeee---eEEEEE---CCeEEEEEEEeCCCc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-----------YVPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~-----------~~~~~------~~~~---~~~~~~---~~~~~~~~i~D~~g~ 64 (139)
+|+++|+.++|||||+++++....... +..+. +... ...... ++....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997543221 00110 0111 011111 345688999999999
Q ss_pred ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+|......++..+|++++|+|+++..+... +.++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9998888888999999999999987765543 344444433 358999999999985
No 168
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.77 E-value=5.5e-19 Score=117.61 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=77.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc---cccCccEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVF 81 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~ 81 (139)
+.-.|+++|++|+|||+|..++.++...+..++- ........ .+...-.+.++|+||+.+.+..... +...+.++
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 3457999999999999999999999655443333 22111111 1223345899999999998874444 37789999
Q ss_pred EEEEeCC-CHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccCc
Q 032516 82 ILAFSLI-SKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 82 i~v~d~~-~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~~ 127 (139)
|+|+|.+ .+..+.+..+++++.+.... ..+|+++++||+|+..+.+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 9999987 45567777788888775433 6799999999999986654
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=4.1e-18 Score=128.04 Aligned_cols=112 Identities=22% Similarity=0.188 Sum_probs=76.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR 76 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 76 (139)
.+|+++|.+|||||||++++.+... ......++.......+..++ ..+.+|||||++. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998763 22222222222233444555 5799999999986 2223445678
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++|++++|+|++++.+... ..+...+++ .+.|+++|+||+|+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPAD--EEIAKILRK--SNKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCcEEEEEECccCcc
Confidence 9999999999987533322 223333444 3689999999999754
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=6.4e-18 Score=113.17 Aligned_cols=113 Identities=19% Similarity=0.141 Sum_probs=80.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------------eeee-EEEEECCeEEEEEEEeCCCccccccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------------DNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 72 (139)
+|+++|.+|+|||||+++++............. .... ...........+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998766543211110 0000 0111222245799999999998888888
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.+++.+|++++|+|++++.+... ..++..+.. .+.|+++++||+|+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcc
Confidence 88999999999999987654443 334444444 5799999999999975
No 171
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=4.9e-18 Score=120.22 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=80.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCC--CCCC--------CCCce----------eeee-eEEEEECCeEEEEEEEeCCCc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVPTV----------FDNF-SANVVVDGSTVNLGLWDTAGQ 64 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~--~~~~--------~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~ 64 (139)
..+|+++|++|+|||||+++++... .... ...+. +... ...........++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3589999999999999999998531 1100 00000 0011 112234556678999999999
Q ss_pred ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|.......++.+|++++|+|+++...... +.++..... .++|+++++||+|+..++
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGRD 139 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence 9888777778899999999999987543222 344444443 478999999999987665
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.76 E-value=7.8e-18 Score=125.84 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=80.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCcccc--ccccc------ccccC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG 77 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~~ 77 (139)
.+|+++|.+|+|||||+|++.+.+...... .++-+.....+...+. ..+.+|||+|..+. ...+. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 689999999999999999999866432211 2222222334444442 25789999997431 11222 23678
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
+|++++|+|++++.+++.+ ..|...+.... .+.|+++|+||+|+..
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 9999999999999888776 55555555443 5799999999999864
No 173
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=8.9e-18 Score=121.94 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=82.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRG 77 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~ 77 (139)
...|.++|.||||||||++++...... ..+..++.......+.+++ ...+.+||+||..+. ..+...+ ++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 357999999999999999999986432 1222222222222233333 256899999997432 2233344 446
Q ss_pred ccEEEEEEeCCCH---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516 78 ADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~ 125 (139)
++++++|+|+++. ++++.+ +.|.+++..+. .+.|+++|+||+|+...
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 8999999999976 677787 77888877654 47899999999998644
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=1.2e-17 Score=109.24 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=75.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYR 76 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 76 (139)
+..+|+++|++|+|||||++++.+...........................+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999865432211111111111112233346789999999764432 2234577
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+|++++|+|++++ +......+...+.. .+.|+++++||+|+.
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK--SKTPVILVLNKIDLV 124 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH--hCCCEEEEEEchhcc
Confidence 89999999999877 22222344444544 268999999999997
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.6e-17 Score=123.51 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=80.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 71 (139)
..+|++++|.+|+|||||+++++..... .....++.......+..++. .+.+|||||..+.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999986532 22222332233334444444 68999999976544322
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
..+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccC
Confidence 2357889999999999988776664 34444444 468999999999996
No 176
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=108.84 Aligned_cols=119 Identities=21% Similarity=0.254 Sum_probs=89.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC--------CCC----CceeeeeeEEEEECCeEEEEEEEeCCCcccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--------DYV----PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 71 (139)
....||++.|+.++||||+++++....... .+. .|+..++... .+++ +..+.+++||||++|+-++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~-~~~~-~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI-ELDE-DTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce-EEcC-cceEEEecCCCcHHHHHHH
Confidence 356899999999999999999998754211 111 1112222222 2222 2468999999999999999
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
+...+++.++|+++|.+.+..+ +. +.+++.+....+ +|+++++||+|+..+.+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDALP 138 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCCC
Confidence 9999999999999999999998 43 667777776433 99999999999987754
No 177
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=2.2e-17 Score=108.89 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=76.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 72 (139)
.++|+++|.+|+|||||++++++..... ...+.. .......+..++. .+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999865321 111221 1122233344443 4789999997543211 11
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
..++.+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCc
Confidence 245788999999999888765543 33333333 46899999999998654
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.75 E-value=4.5e-18 Score=131.73 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=87.3
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCC--CCC-----CCCCc------eeeeee-E--EEEE---CCeEEEEEEEeC
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT-----DYVPT------VFDNFS-A--NVVV---DGSTVNLGLWDT 61 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-----~~~~~------~~~~~~-~--~~~~---~~~~~~~~i~D~ 61 (139)
|..++..+++++|+.++|||||+.+++... +.. ....+ .+.... . .+.+ ++..+.+++|||
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT 81 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT 81 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence 345667899999999999999999998732 111 11111 111111 1 1111 455788999999
Q ss_pred CCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
||+.+|...+..+++.+|++++|+|+++....+.. +.|..... .++|+++|+||+|+..++
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~ 142 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD 142 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc
Confidence 99999998888999999999999999987666554 45544332 478999999999997544
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=1.5e-17 Score=130.44 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=86.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee---eeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
.+..+|+++|+.++|||||++++....+.....+.... .+...+..++....+.+|||||++.|..++..+++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 35679999999999999999999987765443322211 122233334456789999999999999999889999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+++|+|+++....+.. +.| ..+.. .++|+++++||+|+...+
T Consensus 322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANAN 363 (742)
T ss_pred EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccC
Confidence 9999999875332222 222 22222 478999999999997543
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=1.9e-17 Score=111.92 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=76.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------ccccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP 72 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 72 (139)
+....+|+++|++|+|||||++++++..+...+.++.+......... ...++.+|||||.. .+.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45678999999999999999999999775555444443322211111 12579999999953 3333444
Q ss_pred ccccCc---cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 73 LSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 73 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.+++.. +++++++|.+++.+..+ ..+...+.. .+.|+++++||+|+...
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCH
Confidence 455543 67888888876543332 122333333 46899999999998654
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=8.3e-18 Score=126.13 Aligned_cols=113 Identities=24% Similarity=0.258 Sum_probs=77.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYRG 77 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 77 (139)
+|+++|.+|||||||+|++.+.... .....++-......+..++. .+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999986632 12222222222334444443 59999999963 233445557889
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|++++|+|+.++.+... ..+...+++ .+.|+++|+||+|+...+
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKKED 123 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCccc
Confidence 999999999987533332 334555554 468999999999987544
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.74 E-value=4.2e-17 Score=128.87 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=84.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+...|+++|+.++|||||++++....+...+.+.+.... ...+..++ ..+.+|||||++.|..++...++.+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999988776544333322221 23444444 56899999999999999888899999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|||+++...-+.. +.| ..... .++|+++++||+|+...+
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGAN 405 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccC
Confidence 99999874322222 222 22222 479999999999997543
No 183
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.3e-18 Score=111.19 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=91.8
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhC---CCCCC----CCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccc
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTD----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 74 (139)
.....+.++++|..++|||||+.+.-.. .+..- -.++.+. ...++.+.+ ..+++||.+||+..+++|+.|
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL-nig~i~v~~--~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL-NIGTIEVCN--APLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce-eecceeecc--ceeEEEEcCChHHHHHHHHHH
Confidence 4456788999999999999999776432 22211 1222221 223344443 459999999999999999999
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccCc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~~ 127 (139)
+..+|++|+++|+++++.|++....+...+... ..++|+++.+||.|+.++.+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~ 143 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME 143 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh
Confidence 999999999999999999999855555555443 37999999999999975543
No 184
>PRK10218 GTP-binding protein; Provisional
Probab=99.73 E-value=6.4e-17 Score=125.18 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=86.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------Cceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
++..||+++|+.++|||||+++++. +.+...+. .+.+... .....+.....++++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3568999999999999999999997 44433211 1112222 2233445566889999999999999
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
..+..+++.+|++++|+|+++....+. +.++..+.. .++|.+++.||+|+..++.
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~a~~ 137 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPGARP 137 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCCCch
Confidence 989999999999999999987543332 333333333 4689999999999976553
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=2e-17 Score=130.69 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=78.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED--------YNRLRPL 73 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 73 (139)
+...+|+++|.+|||||||+|++++..... ...+...... ......++ ..+.+|||||.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 345789999999999999999999865321 1122222211 22222333 4689999999763 2223344
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+++.+|++++|+|+++. +....+.|.+.++. .+.|+++|+||+|+...
T Consensus 351 ~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 351 AVSLADAVVFVVDGQVG--LTSTDERIVRMLRR--AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECcccccc
Confidence 67899999999999763 33333456666665 57999999999998643
No 186
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=1.6e-17 Score=114.54 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=78.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCC------CceeeeeeE---------EEEEC--------CeEEEEEEEeCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYV------PTVFDNFSA---------NVVVD--------GSTVNLGLWDTA 62 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~--~~~~~------~~~~~~~~~---------~~~~~--------~~~~~~~i~D~~ 62 (139)
+|+++|+.++|||||+.+++...- ..... .....+..+ ..... +....+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986421 11100 000000000 11122 336889999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|+++|......+++.+|++++|+|++++...+.. + .+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~-~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-T-VLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECCCcc
Confidence 9999999889999999999999999987655542 3 3333333 368999999999986
No 187
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.73 E-value=2.5e-17 Score=111.35 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=71.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC----CCCCCC-----CCceeeee-eEEEE----------ECCeEEEEEEEeCCCccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY-----VPTVFDNF-SANVV----------VDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~----~~~~~~-----~~~~~~~~-~~~~~----------~~~~~~~~~i~D~~g~~~ 66 (139)
+||+++|++++|||||+++|+.. .+...+ ..+....+ ...+. .++....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 121111 11222221 11111 123357899999999975
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+........+.+|++++|+|+++....... +.+. .... .+.|+++++||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCC
Confidence 433332334667999999999875443332 2222 1122 2579999999999863
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=4.6e-17 Score=128.64 Aligned_cols=116 Identities=23% Similarity=0.267 Sum_probs=82.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------cccc-
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL- 70 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~- 70 (139)
+..+||+++|.+|||||||++++++... ...+..++.......+..++.. +.+|||||..+ +..+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 3468999999999999999999998764 2333334333334445556654 67999999642 1111
Q ss_pred ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
....++.+|++++|+|++++.+.+.. . +...+.. .+.|+++|+||+|+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCCh
Confidence 12346889999999999988877775 3 4444443 47899999999999653
No 189
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=7.5e-17 Score=120.20 Aligned_cols=116 Identities=20% Similarity=0.145 Sum_probs=79.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGA 78 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 78 (139)
..|.++|.||||||||++++.+.+.. ..+..++-......+.+++ ...+.+||+||.-+ ...+...++ +.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 47999999999999999999986522 1222222111111222331 24699999999642 223334444 458
Q ss_pred cEEEEEEeCCCH---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccc
Q 032516 79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIF 124 (139)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~ 124 (139)
+++++|+|+++. +.++.+ +.|.+++..+. .+.|.++|+||+|+..
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 999999999865 677776 77888887764 3789999999999853
No 190
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=8.5e-17 Score=115.29 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSY 75 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~ 75 (139)
+.-.|+++|.+|||||||+|++++.+..... .+.+.......+... ...++.+|||||...... .....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4567999999999999999999987653221 111111111222222 236799999999754321 223356
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.++|++++|+|+++. +......+++.+.. .+.|+++|+||+|+.
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~--~~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLKK--VKTPVILVLNKIDLV 126 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHhh--cCCCEEEEEECCcCC
Confidence 789999999999872 22222444555543 468999999999997
No 191
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=4.8e-17 Score=112.53 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=74.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee--eEEEEECCeEEEEEEEeCCCcccccc-----cccccccCccE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF--SANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGADV 80 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~ 80 (139)
||+++|+.+|||||+.+-++. ++.+..+...+.+. ...-......+.+++||+|||..+-. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~-~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFH-KYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHc-CCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999998855554 44444444333222 11111123446799999999975533 35667899999
Q ss_pred EEEEEeCCCHH---HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKA---SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~---s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|+|+|+.+.+ .+..+ ...+..+.+.+|++.+.+..+|+|+...
T Consensus 80 LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 99999998444 33333 5556667777899999999999998643
No 192
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=1.1e-16 Score=123.56 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=79.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeeeeEEE-------------EECCeEEEEEEEeCCCcccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP----TVFDNFSANV-------------VVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~~~i~D~~g~~~~ 67 (139)
+..-|+++|++++|||||++++.+..+...... +++..+...- .++.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345699999999999999999998776543222 2222111000 00011123889999999999
Q ss_pred cccccccccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 68 NRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
..++..+++.+|++++|+|+++ +++++.+ . .++. .+.|+++++||+|+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRI 134 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCcc
Confidence 9998889999999999999987 4555544 2 2222 478999999999996
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.71 E-value=1e-16 Score=120.25 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=78.8
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCC--CCCC------------CCC---------------ceeeee-eEEEEEC
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------YVP---------------TVFDNF-SANVVVD 50 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~------------~~~---------------~~~~~~-~~~~~~~ 50 (139)
|+....++|+++|++++|||||+++++... .... ... ..+... .....++
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 677889999999999999999999998432 1100 000 001100 1112233
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 51 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
....++.+|||||+++|.......++.+|++++|+|++++..+.......+..+... ...++++++||+|+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 455789999999998876655555788999999999987322222112233333332 2346999999999964
No 194
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=2.7e-16 Score=111.81 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=74.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC----------CCCceee-eeeEEEEECCeEEEEEEEeCCCcccc------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDY------ 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~------ 67 (139)
..++|+++|.+|+|||||++++++..+... ..++... .....+..++..+++.+|||||..+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998876443 1223222 22344556777789999999994322
Q ss_pred --------------------cccccccccC--ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 68 --------------------NRLRPLSYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 68 --------------------~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
...+...+.+ +|+++++.+.+. ..+...+..+++.+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS---KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh---ccCCEEEEEECCCcCC
Confidence 1112234443 566666666543 223333233444444 3689999999999964
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.69 E-value=2.6e-16 Score=121.78 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=79.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC---CCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+.|+++|++++|||||++++.+. .+...+.+.+.... ...+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 33333333332222 22344444 67999999999999887777889999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccccC
Q 032516 83 LAFSLIS---KASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~~~ 126 (139)
+|+|+++ +++.+.+ . .+.. .++| +++|+||+|+...+
T Consensus 79 LVVDa~~G~~~qT~ehl-~----il~~--lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-A----VLDL--LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EEEECCCCCcHHHHHHH-H----HHHH--cCCCeEEEEEECCCCCCHH
Confidence 9999987 4555444 2 2222 3577 99999999996433
No 196
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.69 E-value=2e-16 Score=103.26 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=73.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--RG 77 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 77 (139)
++|+++|.||+|||||+|++.+.+..-...|. +.+.....+...+ ..+.++|+||.....+ ....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999997643222232 2222233455555 4699999999644332 223343 57
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
.|+++.|.|+++. +.- .++..++.+ -++|++++.||+|+.....
T Consensus 79 ~D~ii~VvDa~~l---~r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 79 PDLIIVVVDATNL---ERN-LYLTLQLLE--LGIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp SSEEEEEEEGGGH---HHH-HHHHHHHHH--TTSSEEEEEETHHHHHHTT
T ss_pred CCEEEEECCCCCH---HHH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcC
Confidence 8999999999764 332 344555555 3699999999999975544
No 197
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=1.9e-16 Score=107.59 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=71.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEE-EEEC-CeEEEEEEEeCCCccccccccccc-----ccC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSAN-VVVD-GSTVNLGLWDTAGQEDYNRLRPLS-----YRG 77 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~i~D~~g~~~~~~~~~~~-----~~~ 77 (139)
++||+++|.+|+|||||+|.+.+.........+.+. ..+.. ..+. .....+.+||+||..........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543322222221 01100 0111 112368999999976433222233 567
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|.++++.+ .++......|++.+++. +.|+++|+||+|+..
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchh
Confidence 788777743 23455545677777764 579999999999954
No 198
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=2.5e-16 Score=121.92 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=83.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------Cceeeee-eEEEEECCeEEEEEEEeCCCcccccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 71 (139)
.+|+++|+.++|||||+.+++. +.+..... ...+... .....+.+...++++|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4799999999999999999986 33322210 0011111 1222334455789999999999999888
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+++.+|++++|+|+++... ... +.|+..+.. .++|+++++||+|+..++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT-~~~l~~a~~--~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHH-HHHHHHHHH--CCCCEEEEEECCCCCCcC
Confidence 899999999999999986432 222 456666555 468999999999997554
No 199
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.6e-16 Score=121.54 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=82.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC--CCCCC------C-CC-c----------eeeee-eEEEEECCeEEEEEEEeCC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------Y-VP-T----------VFDNF-SANVVVDGSTVNLGLWDTA 62 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~------~-~~-~----------~~~~~-~~~~~~~~~~~~~~i~D~~ 62 (139)
++..+|+++|++++|||||+++++.. ..... . .. + .+... ..........+++++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 45679999999999999999999742 11000 0 00 0 01111 1122334455789999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
|+.+|.......++.+|++++|+|+++..... . +.++...+. .++|+++++||+|+..++.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~iPiiv~iNK~D~~~a~~ 148 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-T-RKLMEVCRL--RDTPIFTFINKLDRDGREP 148 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECCcccccCH
Confidence 99999887777899999999999998753222 2 344444443 4799999999999986664
No 200
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=2e-16 Score=111.17 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc--------ccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN--------RLRPL 73 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~ 73 (139)
..+.--++++|.||+|||||+|++++.+..-.......+.. -..+.. ....++.++||||-.+-+ .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 44566799999999999999999999876432211112222 223333 335789999999954322 22344
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
.++++|.+++++|++++-.- -++..++.++. .+.|++++.||+|....+.
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHH
Confidence 57889999999999764333 33567777776 4689999999999887665
No 201
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=4.1e-16 Score=100.88 Aligned_cols=111 Identities=23% Similarity=0.246 Sum_probs=76.4
Q ss_pred EECCCCCCHHHHHHHHHhCCCC-CCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------ccccCccEE
Q 032516 11 TVGDGAVGKTCMLISYTSNTFP-TDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (139)
Q Consensus 11 iiG~~~~GKssl~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~~~~~~~ 81 (139)
++|++|+|||||++++.+.... ..... +............. ...+.+||+||+........ ..++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986544 22222 22222222332221 45699999999877654333 367889999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++++|.++....... . +...... .+.|+++|+||+|+...+
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChh
Confidence 999999988777665 3 3333333 579999999999987543
No 202
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.68 E-value=2.2e-19 Score=117.95 Aligned_cols=119 Identities=29% Similarity=0.516 Sum_probs=103.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEE--EECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV--VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
.+.+|++++|+-|+|||++++|++...|...|..+++..+...+ ..+.+.+.+++||..||++|..+..-|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 35689999999999999999999999999888899988874332 2345557789999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI 123 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~ 123 (139)
.+|||+++...|+.. ..|.+.+.... ..+|+++..||||+.
T Consensus 103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccC
Confidence 999999999999998 88999886543 347889999999987
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=2.2e-16 Score=118.51 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=77.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh--CCCCCCC-----------------------------CCceeeeeeEEEEECC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY-----------------------------VPTVFDNFSANVVVDG 51 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 51 (139)
....++|+++|+.++|||||+.+++. +...... ........ .......
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~-~~~~~~~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDV-AHWKFET 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEE-EEEEEcc
Confidence 34679999999999999999999986 2221100 00011111 1122344
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
....+.+||+||+++|.......++.+|++++|+|++++++.... ....+... ......++++++||+|+..
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVN 155 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccC
Confidence 457899999999998876555567899999999999987533111 01111222 2223457999999999964
No 204
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=3.9e-16 Score=115.60 Aligned_cols=117 Identities=20% Similarity=0.160 Sum_probs=79.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc----ccc---ccccCc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRP---LSYRGA 78 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~---~~~~~~ 78 (139)
..|.++|.||||||||+|++.+.+... .+..|+-......+...+ ...+.++|+||.-+-.. +.. ..++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 469999999999999999999765321 222222222222233322 23589999999643211 111 246789
Q ss_pred cEEEEEEeCC---CHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516 79 DVFILAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 79 ~~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~ 125 (139)
+++++|+|++ +.+.++.+ +.|++++..+. .+.|+++|+||+|+...
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 9999999988 45667776 77888887654 46899999999998643
No 205
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=6e-16 Score=116.38 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 71 (139)
..++|+++|.+|+|||||+++++.... .....+ ++.......+..++ ..+.+|||||....... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999997542 212222 22222223333444 45789999996432211 1
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
..+++.+|++++|+|++++.+.... .+...+.+ .+.|+++++||+|+.
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCC
Confidence 2356789999999999988666654 34444444 468999999999986
No 206
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.68 E-value=4.4e-16 Score=119.12 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=82.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC-CCCCCC-----C----Cce----------eeee-eEEEEECCeEEEEEEEeCC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY-----V----PTV----------FDNF-SANVVVDGSTVNLGLWDTA 62 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~-~~~~~~-----~----~~~----------~~~~-~~~~~~~~~~~~~~i~D~~ 62 (139)
++..+|+++|++++|||||+++++.. ...... . .+. +... ......+....++++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 46789999999999999999998641 111000 0 000 1111 1123345566889999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
|+.+|.......++.+|++++|+|+++. ++...+.+++..+. .++|+++++||+|+...+
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECccccCCC
Confidence 9998887777788999999999999864 22222444444443 478999999999997555
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=4.7e-16 Score=110.29 Aligned_cols=115 Identities=17% Similarity=0.036 Sum_probs=77.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC---CCC-Cce----------eeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF--PT---DYV-PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~--~~---~~~-~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 70 (139)
+|+++|++++|||||+++++...- .. ... .+. +... ...........++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999975211 00 000 000 0010 011122233467999999999988888
Q ss_pred ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
....++.+|++++|+|+.+...-.. +..+..+.. .++|++++.||+|+..++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 8889999999999999977543222 334444444 468999999999997654
No 208
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=1.6e-16 Score=125.27 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=84.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCC--------CC-----CCC---ceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--------TD-----YVP---TVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~--------~~-----~~~---~~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..+..||+++|+.++|||||+++++...-. .. +.+ ..+... ............+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 456789999999999999999999863210 00 000 000000 1111223345789999999999
Q ss_pred cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|......+++.+|++++|+|+++....... ..| ..+.. .++|+++++||+|+..++
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGAD 141 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCCC
Confidence 9988888899999999999999887666654 444 34443 468999999999998665
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=7.7e-16 Score=119.10 Aligned_cols=113 Identities=22% Similarity=0.277 Sum_probs=78.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeeeeEEEEE---CCeE-----E-----EEEEEeCCCccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP----TVFDNFSANVVV---DGST-----V-----NLGLWDTAGQED 66 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~i~D~~g~~~ 66 (139)
.++..|+++|++++|||||++++.+......... +.+..+...... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4567899999999999999999976544322221 122111100000 0111 1 268999999999
Q ss_pred ccccccccccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|..++...++.+|++++|+|+++ +++++.+ . .++. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCc
Confidence 99888888899999999999987 5666555 3 2222 478999999999985
No 210
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=1.5e-16 Score=104.56 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=66.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFIL 83 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~i~ 83 (139)
+|+++|.+|+|||||++++.+. +... ..+ ..+.+... .+||+||+...+... ...++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~~-~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTLA-RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-CccC-ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999997653 2211 111 11122222 269999973222111 123689999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+...+
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCccc
Confidence 999998876533 243333 2467999999999986543
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.67 E-value=4.2e-16 Score=106.75 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=70.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC-C----------------C-Cc----------eeeee-eEEEEECCeEEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF-PTD-Y----------------V-PT----------VFDNF-SANVVVDGSTVNLG 57 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~-~~~-~----------------~-~~----------~~~~~-~~~~~~~~~~~~~~ 57 (139)
+|+++|++|+|||||+++++...- ... . . .. .+... ...........++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975321 110 0 0 00 00000 00111223345789
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||||+++|.......++.+|++++|+|++++..-.. +.....+... ...++++|.||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~-~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL-GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc-CCCcEEEEEEchhccc
Confidence 99999998876655567889999999999987532221 2222222222 2345788999999964
No 212
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=1.5e-16 Score=117.31 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=79.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY 75 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 75 (139)
..|+++|.||||||||+||++..+.. ..+..++-+.........+. .+.++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987542 22222222222223333443 39999999976432 2234457
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
..+|+++||+|....-+ ..++.+.+.+++ .+.|+++|.||+|-...+.
T Consensus 82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~ 129 (444)
T COG1160 82 EEADVILFVVDGREGIT--PADEEIAKILRR--SKKPVILVVNKIDNLKAEE 129 (444)
T ss_pred HhCCEEEEEEeCCCCCC--HHHHHHHHHHHh--cCCCEEEEEEcccCchhhh
Confidence 78999999999865433 333566777774 5799999999999875444
No 213
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=7.4e-16 Score=109.26 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=77.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC------Cce----------eeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 70 (139)
+|+++|++|+|||||+++++......... .+. .... ...........++.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999998532110000 000 0000 011122233467999999999888777
Q ss_pred ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
....++.+|++++|+|+++....... ..| ..+.. .++|.++++||+|+...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~~ 132 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERAD 132 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCCC
Confidence 78889999999999999877555433 333 33333 468999999999987553
No 214
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=7.3e-16 Score=116.52 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=76.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccc---ccccC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRP---LSYRG 77 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~---~~~~~ 77 (139)
...|+++|.||||||||++++.+.+... .+..|+-......+...+ ..+.+||+||.-. ...+.. ..++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 4679999999999999999999764321 222222222222333344 4699999999532 112212 23567
Q ss_pred ccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCccccC
Q 032516 78 ADVFILAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 78 ~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~~vivv~nK~D~~~~~ 126 (139)
++++++|+|+++. +.+..+ +.|..++..+. .+.|+++|+||+|+....
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 8999999999753 345554 45555554332 368999999999997543
No 215
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.66 E-value=8.7e-16 Score=103.56 Aligned_cols=115 Identities=23% Similarity=0.261 Sum_probs=79.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-------------C-----Cceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------V-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-------------~-----~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
+.++|+++|+.++|||||+.+++........ . ....... ......+.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999864321110 0 0000000 1122212455679999999999
Q ss_pred cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+|.......++.+|++++|+|+.+.-.... ...+..+.. .++|++++.||+|+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccch
Confidence 988877778999999999999987644333 344444544 468899999999997
No 216
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=1.5e-15 Score=94.87 Aligned_cols=105 Identities=23% Similarity=0.273 Sum_probs=67.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---------ccccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR 76 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~ 76 (139)
+|+++|.+|+|||||++++++.+... ....++..........++.. +.++||||-..-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999854311 11222222222334455554 67999999643211 1223347
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK 119 (139)
.+|++++|+|.+++.. +. ...+++.++ .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~-~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-ED-DKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HH-HHHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HH-HHHHHHHHh---cCCCEEEEEcC
Confidence 8999999999877322 22 245555553 57999999998
No 217
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=4.5e-15 Score=117.71 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=77.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------ccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------~~~ 74 (139)
+.++|+++|++|+|||||+|++.+.+......+....+ ......+....++.+||+||+..+.... ..+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 35789999999999999999998765432222222111 2222234445679999999998765421 123
Q ss_pred c--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 75 Y--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+ ..+|++++|+|.++.+.- .++..++.+ .+.|++++.||+|+.+.
T Consensus 81 l~~~~aD~vI~VvDat~ler~----l~l~~ql~e--~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN----LYLTLQLLE--LGIPCIVALNMLDIAEK 127 (772)
T ss_pred HhccCCCEEEEEecCCcchhh----HHHHHHHHH--cCCCEEEEEEchhhhhc
Confidence 2 478999999999875442 234445544 36999999999998643
No 218
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.5e-16 Score=99.71 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=95.8
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+++..+++++|..|+||||+..|+.-++.. ...|+++... . ++..+..++++||.+||...+..|..|+.+.+++|
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnv-e--~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNV-E--TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCc-c--ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 346789999999999999999887766543 2244544322 1 23346678999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|+|.+|..........++.++.+.. .+..+++++||+|...+-
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~ 135 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL 135 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence 99999999988877777888887643 678899999999987543
No 219
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=2.1e-15 Score=100.94 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=82.9
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCC----------ccccccc
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAG----------QEDYNRL 70 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~ 70 (139)
+++....|+|+|.+|||||||+|.+++.+-......+.+.+... -..+++. +.+.|.|| ++.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 34566789999999999999999999977544444555444322 2233443 89999999 3455566
Q ss_pred ccccccC---ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 71 RPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+|++. ..++++++|+..+- ...+.+.++.+.+ .++|++++.||+|.....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE--LGIPVIVVLTKADKLKKS 151 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH--cCCCeEEEEEccccCChh
Confidence 6777754 35788888875443 3333466677666 579999999999998643
No 220
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=2.2e-15 Score=118.88 Aligned_cols=119 Identities=18% Similarity=0.053 Sum_probs=81.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC----CCCC--c----------eeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT----DYVP--T----------VFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~----~~~~--~----------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 66 (139)
.+..+|.++|++++|||||+++++...-.. .... + .+... ...........++.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 456799999999999999999998521110 0000 0 00110 11112223346799999999998
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+.......++.+|++++|+|+++....+. +.++..++. .++|+++++||+|+..++
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS--ETVWRQANR--YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 88778888999999999999987655543 234444444 468999999999998554
No 221
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=5e-15 Score=114.86 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=71.9
Q ss_pred CCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 032516 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL 83 (139)
Q Consensus 13 G~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~ 83 (139)
|.+|+|||||+|++.+......+.+..... ....+..++. ++++||+||+.++... ...++ +++|+++.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999876543333433322 2334445553 5899999999877653 23333 37899999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
|+|.++.+.. .++..++.+ .+.|+++++||+|+.+.+
T Consensus 79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~ 115 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKK 115 (591)
T ss_pred EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhC
Confidence 9999874322 223333333 479999999999986443
No 222
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.61 E-value=7.6e-15 Score=99.61 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=75.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC------CC--C---C---ceeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT------DY--V---P---TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~------~~--~---~---~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 70 (139)
.++|.++|+.++|||||+++++...... .+ . + ..+... .....+.....++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4799999999999999999998631000 00 0 0 001111 112223344567899999999887776
Q ss_pred ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKI 123 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~ 123 (139)
....+..+|++++|+|++..-.-.. +..+..+.. .++| ++++.||+|+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQ--VGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCcEEEEEeCCCCC
Confidence 6677889999999999976532222 334444544 3466 78999999986
No 223
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.61 E-value=4.1e-15 Score=101.49 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+.+|||||++++.......+..+|++++|+|++++ ++...+ . .+... ...|+++++||+|+..
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~----~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-A----ALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-H----HHHHc-CCCcEEEEEEchhccC
Confidence 5799999999998877777777889999999999863 223322 2 22221 2357999999999974
No 224
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.61 E-value=2.9e-14 Score=99.26 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=56.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------cccccccCcc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 79 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~ 79 (139)
+++++|.+|+|||||++++.+.... ..+..++.......+.+++ ..+++||+||+.+... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999986532 2222222222233334444 5699999999754321 1234678999
Q ss_pred EEEEEEeCCCHH
Q 032516 80 VFILAFSLISKA 91 (139)
Q Consensus 80 ~~i~v~d~~~~~ 91 (139)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 225
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=6.3e-15 Score=96.55 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=69.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSYR 76 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 76 (139)
.|+++|.+|+|||||++++.+..+.+...++.+.... .....+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999976655544444333221 1222222 789999999433 3333344444
Q ss_pred ---CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 77 ---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 77 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+.+++++|.++..+... ......+.. .+.|+++++||+|+..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~--~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEE--LGIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH--cCCCEEEEEEchhcCC
Confidence 3568888998876532221 122233333 2489999999999853
No 226
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.5e-15 Score=97.25 Aligned_cols=117 Identities=19% Similarity=0.335 Sum_probs=91.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.-|++|+|..|+|||||++-+-+++. .+..||.-.. ...+.+.+ +++.-+|.+|+..-+..++.|+..++++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 456899999999999999988877764 3445554222 12223344 5699999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|+-+.+.|.+..+++-..+.... .+.|+++.+||+|.+.+
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 999999999998665555554432 68999999999999743
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.60 E-value=4.7e-15 Score=102.30 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--------------C-------CCCceeeeee-------EEEEECCeEEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT--FPT--------------D-------YVPTVFDNFS-------ANVVVDGSTVNLG 57 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~--~~~--------------~-------~~~~~~~~~~-------~~~~~~~~~~~~~ 57 (139)
+|+++|+.++|||||+.+++... ... . .......+.. ....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999997421 100 0 0000000001 1122233456799
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||||+..|.......++.+|++++|+|+++... + ....+.+ ..... ....|++++.||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEcccccc
Confidence 99999998777666666788999999999987421 1 1121222 22222 23468999999999973
No 228
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.60 E-value=3.9e-15 Score=117.84 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=81.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC---------------CCCCC---CCCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN---------------TFPTD---YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~---------------~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~ 64 (139)
.+..||+++|+.++|||||+++++.. ++.+. +..|+.... ......++..+++++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45679999999999999999999853 11111 001111111 112234566788999999999
Q ss_pred ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|.......++.+|++++|+|+.+....+.. ..| ..... .+.|.++++||+|+...+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~~~ 154 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVL-RQALK--ENVKPVLFINKVDRLINE 154 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHH-HHHHH--cCCCEEEEEEChhcccch
Confidence 99888778889999999999999775333322 223 22222 467889999999997543
No 229
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.56 E-value=8e-15 Score=103.49 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=83.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc------------cccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY------------NRLR 71 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~~ 71 (139)
.+...++++|.||+|||||.|.+++.+..+.......+.....-.+.....++.++||||.-.- .+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 5678999999999999999999999887655433333333322234455568999999994211 1122
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF 129 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~ 129 (139)
...+..+|.+++++|+++. -..+....+..+..+ .++|-++|.||.|........
T Consensus 150 ~~a~q~AD~vvVv~Das~t--r~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~L 204 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASAT--RTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLL 204 (379)
T ss_pred HHHHhhCCEEEEEEeccCC--cCccChHHHHHHHHH-hcCCceeeccchhcchhhhHH
Confidence 3345678999999999873 222223455566655 479999999999987555443
No 230
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=9.4e-15 Score=98.24 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=86.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccccc---CccEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVF 81 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~ 81 (139)
.+-.++++|+.+||||+|.-++..+.+.+...+-.+..-. ....+. ...++|.||+.+.+.....+++ .+-++
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~--~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEAT--YRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceee--EeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3457999999999999999999998665443332222111 222222 2799999999998887767776 68899
Q ss_pred EEEEeCC-CHHHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccCc
Q 032516 82 ILAFSLI-SKASYENVAKKWIPELRHY---APGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 82 i~v~d~~-~~~s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~~~~~ 127 (139)
|||+|.. ......+..+++++.+-.. ...+|+++++||.|+.-+.+
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 9999873 4455566667788777654 36799999999999986654
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=3.6e-14 Score=106.06 Aligned_cols=119 Identities=20% Similarity=0.159 Sum_probs=77.0
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCC--C----CCC--Cc------eeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T----DYV--PT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~----~~~--~~------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 67 (139)
+...++|+++|++++|||||+++++...-. . .+. .. .+... .....+.....++.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456799999999999999999999864110 0 000 00 01100 011223334457889999999877
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIFC 125 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~~ 125 (139)
.......+..+|++++|+|+.+...-+. +..+..+.. .++| ++++.||+|+...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~--~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQ--VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEccCCCCH
Confidence 6655666788999999999976432222 333444443 3578 7789999999743
No 232
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=2.5e-14 Score=112.98 Aligned_cols=120 Identities=18% Similarity=0.057 Sum_probs=80.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCC--C---CCCC-----------ceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T---DYVP-----------TVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~---~~~~-----------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..+..+|+++|+.++|||||+++++...-. . .... ..+... ...........++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 346789999999999999999999852110 0 0000 000110 1111222234679999999998
Q ss_pred cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|.......++.+|++++|+|+.+...-+. +..+..+.. .++|.+++.||+|+...+
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~--~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADK--YGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 887778888899999999999987643333 334444444 468999999999998544
No 233
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.55 E-value=4.1e-14 Score=104.83 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=79.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 74 (139)
.-+|++++|.||+|||||+|.+++.+..- ...+ |+-+.....+.+++ +.+.+.||+|.-+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 45899999999999999999999875422 1122 22222355666677 45999999996544322 2345
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
++++|.+++|+|.+.+.+-... ..+. ....+.|+++|.||.|+.....
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc
Confidence 7899999999999986222222 1222 2235799999999999986543
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=4.6e-14 Score=105.03 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=75.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCC---C---C--CC------ceeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---D---Y--VP------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~---~---~--~~------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 67 (139)
....++|.++|+.++|||||+++++...... . + .. ..+... .....+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3467999999999999999999998631100 0 0 00 001111 112233334457899999999988
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
.......+..+|++++|+|+++...-+. +..+..+.. .++| ++++.||+|+..
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~--~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQ--VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCEEEEEEEecCCcc
Confidence 6655555678899999999986422222 233333443 3577 678899999864
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=5.6e-14 Score=104.62 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=73.8
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCC-------CC-----CCC--CCceeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT-------FP-----TDY--VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~-------~~-----~~~--~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 67 (139)
..+.++|+++|+.++|||||+++++... +. +.. ....+... ...+.+.....++.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 3567999999999999999999997420 00 000 00001111 112333444567899999999988
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKIF 124 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~~ 124 (139)
..........+|++++|+|+++...-+. ...+..+.. .++|.+ ++.||+|+..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~--~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEecccCC
Confidence 6544445567899999999987422222 222333333 256755 6899999864
No 236
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.53 E-value=8.2e-14 Score=108.46 Aligned_cols=108 Identities=23% Similarity=0.236 Sum_probs=71.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhC---CCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
-|.++|+.++|||||++++.+. .+.+.. ..|+...+......++ ..+.+||+||+++|.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 4789999999999999999853 232222 1222222221111122 34899999999988766666688999999
Q ss_pred EEEeCCCH---HHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 83 LAFSLISK---ASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
+|+|+++. ++.+.+ ..+.. -++| +++|+||+|+..
T Consensus 80 LVVda~eg~~~qT~ehl-----~il~~--lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 80 LVVACDDGVMAQTREHL-----AILQL--TGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHH--cCCCeEEEEEECCccCC
Confidence 99999873 333333 23332 2345 679999999964
No 237
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.53 E-value=1.4e-13 Score=101.78 Aligned_cols=116 Identities=23% Similarity=0.248 Sum_probs=81.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL-R 71 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 71 (139)
..+||+++|.||+|||||+|++++.+-. .....|+-+.....+..++. ++.++||+|..+ |... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999986532 22223333333445555665 489999999533 2221 1
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
...+..++.+++|.|++++-+-++ ......+.+ .+.++++|.||+|+.+.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEED 305 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCch
Confidence 234667899999999987765555 355666655 578999999999997654
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.1e-13 Score=103.17 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=74.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC-------CCCCC-CCC------ceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD-YVP------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~-------~~~~~-~~~------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...++|.++|++++|||||+++++.. .+... ... ..+... .....+.....++.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 46799999999999999999999862 10000 000 001111 1112233344578999999998876
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKIF 124 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~~ 124 (139)
......+..+|++++|+|+.+...-+. ...+..+.. .++|.+ ++.||+|+..
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcc
Confidence 655566778999999999986432222 233333433 357755 6799999963
No 239
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.53 E-value=2.9e-14 Score=106.46 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=73.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC---CC--CCceeeeee-----------------EEEEECC------eEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DY--VPTVFDNFS-----------------ANVVVDG------STVN 55 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~---~~--~~~~~~~~~-----------------~~~~~~~------~~~~ 55 (139)
...++|+++|+.++|||||++++....... .. .-|....+. .....+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999998886432110 00 001111100 0000011 1357
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 56 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+.+||+||+++|..........+|++++|+|++++...... ...+..+.. ....++++++||+|+...
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~-~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEI-IGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHH-cCCCeEEEEEEccccCCH
Confidence 99999999999887766677788999999999864311111 112222222 123468999999999643
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.52 E-value=1.3e-13 Score=104.58 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=76.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC------CCCCC--------CCceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT------FPTDY--------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~------~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...++|+++|+.++|||||+++++... ....+ ....+... .....+......+.++|+||+++|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 457899999999999999999999621 11100 00001110 0111223334578999999999887
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
......+..+|++++|+|+.+...-+. +.++..+.. .++| ++++.||+|+..
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~--~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEecccccC
Confidence 666666778999999999886543332 334444444 3577 788999999964
No 241
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=97.50 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=76.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--cccc------cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR------PLSY 75 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~ 75 (139)
....|++.|.||||||||++.+.+.+-.-. |..|+-.-+..... .....++++||||--+- ..++ -..+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee--cCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 456799999999999999999998664332 33332212222232 23346999999995421 1111 1122
Q ss_pred c-CccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 76 R-GADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 76 ~-~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+ -.++++|++|.+... +++.- ..++.+++.... .|+++|.||+|..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIA 293 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEeccccc
Confidence 2 247899999998664 45554 677778877665 8999999999986
No 242
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.51 E-value=2.3e-13 Score=94.16 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=73.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----------------------eeeeEE--------------EEEC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-----------------------DNFSAN--------------VVVD 50 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~-----------------------~~~~~~--------------~~~~ 50 (139)
|++++|+.++|||||+++|..+.+.+....... ...... -...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999998766442211110 000000 0001
Q ss_pred CeEEEEEEEeCCCcccccccccccc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 51 ~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.....+.+.|+||+++|.......+ ..+|++++|+|++.+.. .....++..+.. .++|+++|.||+|+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~--~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA--LNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH--cCCCEEEEEECccccCH
Confidence 1134689999999998865433334 36899999999876533 222455555555 45899999999998643
No 243
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.50 E-value=1.4e-13 Score=102.93 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=70.8
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC------CceeeeeeE-EE----------------EEC------CeE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFDNFSA-NV----------------VVD------GST 53 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~~~~~~~-~~----------------~~~------~~~ 53 (139)
....++|+++|+.++|||||+.++... +.+... -|....+.. .. ..+ ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 356799999999999999999888542 111100 111111100 00 000 012
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+++||+||+++|..........+|++++|+|++++ ++.+.+ . .+... ...|+++|+||+|+..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~----~l~~~-~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-M----ALDII-GIKNIVIVQNKIDLVS 153 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEEeecccc
Confidence 5799999999988766444445567999999999854 333332 2 22221 2246899999999964
No 244
>PRK00007 elongation factor G; Reviewed
Probab=99.49 E-value=2.4e-13 Score=107.44 Aligned_cols=119 Identities=16% Similarity=0.046 Sum_probs=79.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh--CCCCC---CCC-----------Cceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT---DYV-----------PTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~---~~~-----------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 66 (139)
++..+|+++|++++|||||+++++. +.... ... ...+... ...........+++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4567999999999999999999984 21110 000 0000110 11112222345799999999988
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
|.......++.+|++++|+|+.+.-..+. +..+..+.+ .++|.+++.||+|+...+
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~--~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADK--YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 76666667889999999999876644443 334444444 368999999999998554
No 245
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=3.8e-13 Score=96.26 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=71.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-------cccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLS 74 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~ 74 (139)
.+.++|+++|.+|+||||++|++++..... ...+............+ ..++.+|||||..+.... .+.+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 357899999999999999999999865321 11111111111122233 357999999997654221 1112
Q ss_pred c--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccC
Q 032516 75 Y--RGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFCD 126 (139)
Q Consensus 75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~~ 126 (139)
+ ...|++++|..++.. .+.+.+...++.+..... -.+++++.|++|....+
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 2 258899999655432 233333445555544321 25689999999976433
No 246
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.48 E-value=7.5e-13 Score=89.85 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=71.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCC--CceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------c---cc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------L---RP 72 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~ 72 (139)
++|+++|.+|+||||++|.+++...- .... +.+..........++ ..+.++||||-.+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999986532 2211 111111122233344 4699999999654321 0 11
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFC 125 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~ 125 (139)
....++|++++|.++.+ +...+...++.+++... -.+++++.|+.|....
T Consensus 79 ~~~~g~~~illVi~~~~---~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR---FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred hcCCCCEEEEEEEECCC---cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 12357899999999876 22223445555555432 2578999999997654
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=2.6e-13 Score=103.03 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=73.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCC----------CCc-------------eeeeeeE-------EEEECC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDY----------VPT-------------VFDNFSA-------NVVVDG 51 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~----------~~~-------------~~~~~~~-------~~~~~~ 51 (139)
...++|+++|+.++|||||+.+++...- .... ..+ ...+..+ ......
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 5679999999999999999999986421 1100 000 0000000 111233
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
...++.++||||+++|.......++.+|++++|+|+.+...-... +.+ ..+... ...+++++.||+|+...
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLVDY 175 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccccc
Confidence 446789999999988865444457899999999999765322111 111 112211 12478999999999743
No 248
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=8e-14 Score=103.40 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhC--CC-----CCCCCCceee------e-----eeEEEEE-CCeEEEEEEEeCC
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TF-----PTDYVPTVFD------N-----FSANVVV-DGSTVNLGLWDTA 62 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~-----~~~~~~~~~~------~-----~~~~~~~-~~~~~~~~i~D~~ 62 (139)
+.++..+++++.+-..|||||..|++.. .. ..+...+.+. + .+..... +++.+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 4567788999999999999999999852 11 1111111111 1 1112221 4578999999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY 128 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~ 128 (139)
|+-+|.-.....+..|.+.++|+|+++.-..+.+ ...+..+. .+..++.|.||+|++.+++.
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle---~~LeIiPViNKIDLP~Adpe 146 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPAADPE 146 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHH---cCcEEEEeeecccCCCCCHH
Confidence 9999999999999999999999999998888887 55555555 37899999999999998874
No 249
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=7.3e-14 Score=97.42 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=81.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCce-eeeeeEEEEECCeEEEEEEEeCCCccc-------cccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTV-FDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPLS 74 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~ 74 (139)
..+++++++|..|+||||++|.++.+...+.. .+.. .........++++ .+.+||+||.++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHHH
Confidence 46899999999999999999999976543332 1211 1111222233443 489999999665 55667778
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+...|.++.+.++.|+.--.. ++++..+....-+.+++++.|.+|...
T Consensus 115 l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred hhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhc
Confidence 889998888888877644333 455555555555689999999999863
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.47 E-value=1.8e-13 Score=102.25 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=71.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CC-------------CCC----------CceeeeeeE-------EEEECCeEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTF--PT-------------DYV----------PTVFDNFSA-------NVVVDGSTV 54 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~--~~-------------~~~----------~~~~~~~~~-------~~~~~~~~~ 54 (139)
++|+++|+.++|||||+.+++...- .. ... .....+..+ .........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999975321 11 000 000000001 112233445
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 55 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++.++||||+++|.......+..+|++++|+|+.+...-+.. +.+ ..+... ...+++++.||+|+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEeccccc
Confidence 799999999998866555667899999999999765322221 212 222222 2346899999999864
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.47 E-value=7.5e-13 Score=99.84 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=74.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC------CCCCCC--CCc------eeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFPTDY--VPT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~------~~~~~~--~~~------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...++|+++|+.++|||||++++... .....+ ... .+... .....+.....++.++||||+.+|-
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 46789999999999999999999631 000000 000 01110 1122234445678999999998776
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
.........+|++++|+|+.+...-+. +..+..+.. .++| ++++.||+|+..
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~--~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEeeccCC
Confidence 544445567999999999876532221 333444444 3578 578899999974
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=99.47 E-value=7e-13 Score=98.80 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=76.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCC---CC---CC--------Cceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---TD---YV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~---~~---~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...++|+++|+.++|||||+++++..... .. +. ...+... .....+.....++.+.||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56799999999999999999999863110 00 00 0001111 1122233344578999999998876
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKIF 124 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~~ 124 (139)
......+..+|++++|+|+.+...-+. +..+..+.. .++|.+ ++.||+|+..
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~--~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHH--cCCCEEEEEEeecCCcc
Confidence 655666789999999999976533222 334444444 357875 6899999964
No 253
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.47 E-value=6.5e-13 Score=83.24 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=68.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
+|++++|..|+|||+|+.|+....+...+. ++.+ +......+.+..+.++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998887765443 3322 3334455677889999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
+.++.++++.+ |...+.... .+.|.++++||.|+.+
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHh
Confidence 99999998765 666665433 5788999999999854
No 254
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.47 E-value=4.8e-13 Score=96.99 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLG 121 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D 121 (139)
...+.+||++||...+..|..++.+++++++|+|+++- +.+.+..+.+...+.... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999873 455555344444444322 6899999999999
Q ss_pred ccc
Q 032516 122 KIF 124 (139)
Q Consensus 122 ~~~ 124 (139)
+..
T Consensus 240 ~f~ 242 (317)
T cd00066 240 LFE 242 (317)
T ss_pred HHH
Confidence 864
No 255
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=1.3e-12 Score=91.71 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=71.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---c-------c
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R 71 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~ 71 (139)
...++|+++|.+|+|||||+|.+++...... ..+.+..........++ .++.+|||||-.+... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4579999999999999999999998754222 11222111122233344 4689999999764421 0 1
Q ss_pred ccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccC
Q 032516 72 PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFCD 126 (139)
Q Consensus 72 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~~ 126 (139)
..+++ ..++++++..++.. .+...+...++.+..... -.++++|.||+|..-.+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 22333 46777777655432 222222345555554321 15699999999986333
No 256
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.9e-13 Score=101.10 Aligned_cols=122 Identities=19% Similarity=0.174 Sum_probs=90.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CC-----CCCCce------eeee---eEEEE-ECCeEEEEEEEeCCCccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PT-----DYVPTV------FDNF---SANVV-VDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~-----~~~~~~------~~~~---~~~~~-~~~~~~~~~i~D~~g~~~ 66 (139)
++..++.++.+-.-|||||..|++...- .. +..... +.+. +..+. .+++.+.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5677899999999999999999985311 11 111111 1111 11222 235668899999999999
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF 129 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~ 129 (139)
|+......+..++++++|+|+++.-..+.. ..+...+. .+..++.|.||+|++.+|+..
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe---~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFE---AGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHH---cCCeEEEeeeccCCCCCCHHH
Confidence 999999999999999999999998888877 44444444 368899999999999888743
No 257
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.43 E-value=4.4e-13 Score=107.78 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=80.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCC-Cce-----e------eeee---EEEEE--------------CC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYV-PTV-----F------DNFS---ANVVV--------------DG 51 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~-~~~-----~------~~~~---~~~~~--------------~~ 51 (139)
+.+..+|+++|+.++|||||+.+++...- ..... .+. . .... ..... ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45678999999999999999999986431 11000 000 0 0000 01111 12
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
....++++||||+.+|.......++.+|++++|+|+.+.-..... ..|.. ... .++|++++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~-~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHH-HHH--CCCCEEEEEECCccc
Confidence 356789999999999988888888999999999999877555443 33433 333 478999999999997
No 258
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=6e-13 Score=106.90 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=79.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCC-ce-----eeeeeEE---------EEEC--------CeEEEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVP-TV-----FDNFSAN---------VVVD--------GSTVNLG 57 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~~~-~~-----~~~~~~~---------~~~~--------~~~~~~~ 57 (139)
+++..+|+++|+.++|||||+++++... ....... +. ..+..+. .... +....++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3456799999999999999999998632 1111000 00 0011111 1111 2256799
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
++||||+.+|.......++.+|++++|+|+.+.-..+. +..+..+.. .++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t--~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT--ETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH--HHHHHHHHH--cCCCEEEEEEChhhh
Confidence 99999999988877888899999999999987644443 233344444 368999999999997
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.42 E-value=9.2e-13 Score=103.28 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=73.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CCC----------CCCc----ee---------eeeeE-------EEEECC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTD----------YVPT----VF---------DNFSA-------NVVVDG 51 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~----------~~~~----~~---------~~~~~-------~~~~~~ 51 (139)
...++|+++|++++|||||+++++...- ... ...+ .. .+..+ ......
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4578999999999999999999986321 100 0000 00 00001 111223
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
...++.++||||+++|.......+..+|++++|+|+++...-+. +.....+... ...+++++.||+|+..
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEeccccc
Confidence 34568899999998876544456788999999999976532221 1122222222 2357899999999964
No 260
>COG2262 HflX GTPases [General function prediction only]
Probab=99.42 E-value=2.3e-12 Score=94.27 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=87.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPL 73 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 73 (139)
+....|.++|..|+|||||+|++.+... ..+...++-+..++.+...+ .-.+.+-||-|-- .|++..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 3457799999999999999999997543 34455555555566666654 2358888999842 2332222
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
....+|.++.|+|++++...+.+ +.-.+.+.+.. .++|+++|.||+|+....
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence 24678999999999999877777 77777777764 679999999999976433
No 261
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.40 E-value=3.5e-12 Score=96.26 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=75.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCC---------------------CCceeeeeeEE-------EEECCeE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDY---------------------VPTVFDNFSAN-------VVVDGST 53 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~---------------------~~~~~~~~~~~-------~~~~~~~ 53 (139)
...++++++|+.++|||||+.+++...- .... ......+..+. .......
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999999875211 0000 00001111111 1233445
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHH-------HHHHHHHHHHhhhCCCC-CEEEEeecCCcc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE-------NVAKKWIPELRHYAPGV-PIILVGTKLGKI 123 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~-~vivv~nK~D~~ 123 (139)
..++++|+||+++|.......+..+|++++|+|+++. .|+ ...+.|. ..+. .++ +++++.||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~--~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT--LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH--cCCCcEEEEEEcccCC
Confidence 6899999999999988888888999999999999863 221 2212222 2222 356 478899999975
No 262
>PRK12740 elongation factor G; Reviewed
Probab=99.39 E-value=9e-13 Score=103.97 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=74.0
Q ss_pred ECCCCCCHHHHHHHHHhCCCC--C--CC-C-Cce----------eeee-eEEEEECCeEEEEEEEeCCCccccccccccc
Q 032516 12 VGDGAVGKTCMLISYTSNTFP--T--DY-V-PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (139)
Q Consensus 12 iG~~~~GKssl~~~~~~~~~~--~--~~-~-~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 74 (139)
+|++++|||||+++++...-. . .. . .+. +... ............+.+|||||+.++.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999753211 0 00 0 000 0000 0111222344679999999998887777788
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++.+|++++++|+++....... . .+..+.. .++|+++++||+|+...+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~-~~~~~~~--~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-T-VWRQAEK--YGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-H-HHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 8999999999999887655443 3 3333433 468999999999987544
No 263
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.37 E-value=3.3e-12 Score=93.43 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhh-CCCCCEEEEeecCC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHY-APGVPIILVGTKLG 121 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D 121 (139)
...+.+||.+||...+..|..++.+++++++|+|+++- ..+.+....|...+... ..+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35688999999999999999999999999999999863 45655534444444332 26899999999999
Q ss_pred ccc
Q 032516 122 KIF 124 (139)
Q Consensus 122 ~~~ 124 (139)
+..
T Consensus 263 ~~~ 265 (342)
T smart00275 263 LFE 265 (342)
T ss_pred hHH
Confidence 874
No 264
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.36 E-value=3.6e-12 Score=101.35 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=79.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCC--Cc----eeeeeeE---------E--EEECCeEEEEEEEeCCCc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYV--PT----VFDNFSA---------N--VVVDGSTVNLGLWDTAGQ 64 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~--~~----~~~~~~~---------~--~~~~~~~~~~~i~D~~g~ 64 (139)
++..+|+++|+.++|||||+.+++...- ..... .+ ...+..+ . ...++....++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4567899999999999999999986321 11000 00 0000000 1 122445678999999999
Q ss_pred ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|.......++.+|++++|+|+......+.. ..|....+ .+.|.+++.||+|+...+
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~---~~~~~iv~iNK~D~~~~~ 155 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR---ERVKPVLFINKVDRLIKE 155 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH---cCCCeEEEEECchhhccc
Confidence 99888778888999999999998876443332 33433222 246789999999987443
No 265
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=1.3e-12 Score=89.23 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=82.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~ 76 (139)
..-||+++|.+|+||||+-..++.+- ++. ...+|++.... ...+-+ ...+++||++||+.+ .......++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs-h~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS-HVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh-hhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 45799999999999999887666432 111 11222222221 122222 256999999999854 335566789
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 77 GADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~---~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
+.+++++|||+...+--.++ .++ ++.+.+.+|+..+++..+|.|+...|.
T Consensus 81 nV~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 99999999999887665555 444 445566678999999999999986554
No 266
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=9.4e-12 Score=88.47 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=81.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGA 78 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~ 78 (139)
..+-++|.||+|||||++.+.+.+- ...|..|+-.+.--.+.+++- .++.+-|.||--+- +.+-..| ++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4577999999999999999998652 234444443333223333332 34899999994332 2233334 4578
Q ss_pred cEEEEEEeCCCH---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516 79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~ 126 (139)
+.+++|+|++.. +.++.+ +.+..++..+. .+.|.++|+||+|++++.
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae 328 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE 328 (366)
T ss_pred ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH
Confidence 999999999988 777777 66666665543 678999999999996443
No 267
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.35 E-value=9.5e-12 Score=93.94 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=74.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC---------------------CCceeeeeeE-------EEEECCeE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY---------------------VPTVFDNFSA-------NVVVDGST 53 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~---------------------~~~~~~~~~~-------~~~~~~~~ 53 (139)
...++|+++|+.++|||||+.+++.. ...... ......+..+ ........
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45789999999999999999999862 111000 0000001111 11234445
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLGKI 123 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~ 123 (139)
..+.++|+||+.+|.......+..+|++++|+|+++... + ....+.|. .+.. -++| ++++.||+|..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDK 158 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEccccc
Confidence 679999999999987776777889999999999986531 1 11112222 2332 3555 67999999953
No 268
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=7.7e-12 Score=98.16 Aligned_cols=121 Identities=19% Similarity=0.132 Sum_probs=87.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCC--CCC---CCCC--ce---eeeeeEE-------EEECCe-EEEEEEEeCCCc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT---DYVP--TV---FDNFSAN-------VVVDGS-TVNLGLWDTAGQ 64 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~---~~~~--~~---~~~~~~~-------~~~~~~-~~~~~i~D~~g~ 64 (139)
.++..+|.++|+-.+||||+..+++... ... .... +. ..+..+. ++...+ ...++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4577899999999999999999998531 111 1100 11 1111111 122233 478999999999
Q ss_pred ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
-+|.......++-+|++++|+|+.+....+.- ..|.+..+ .++|.+++.||+|+...+-
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~---~~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK---YGVPRILFVNKMDRLGADF 145 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh---cCCCeEEEEECccccccCh
Confidence 99999999999999999999999887666664 55655544 3799999999999986664
No 269
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.29 E-value=4e-11 Score=92.56 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=75.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc------ccccccc--
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSY-- 75 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~-- 75 (139)
+..+++++|+||||||||.|++.+.... .++...+.+...-.....+. ++++.|.||.-... .....++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3467999999999999999999986543 34433333333444555554 48999999965432 2334444
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.+.|.+|-|+|+++-+.--.+ --++.+ -+.|++++.|++|....
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl----tlQLlE--~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL----TLQLLE--LGIPMILALNMIDEAKK 123 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH----HHHHHH--cCCCeEEEeccHhhHHh
Confidence 356999999999865433322 122222 37899999999998644
No 270
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.28 E-value=3.1e-11 Score=87.46 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=53.8
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-CC-----CCceeeeeeEE----------------EEECC-eEEEEEEEeCCCc-
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFPT-DY-----VPTVFDNFSAN----------------VVVDG-STVNLGLWDTAGQ- 64 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~~-~~-----~~~~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~- 64 (139)
|.++|.|+||||||++++.+..... .+ .|+.+..+... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5789999999999999999876432 11 12222211100 00122 4477999999997
Q ss_pred ---cccccccccc---ccCccEEEEEEeCC
Q 032516 65 ---EDYNRLRPLS---YRGADVFILAFSLI 88 (139)
Q Consensus 65 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 88 (139)
++++.+...+ ++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455554454 88999999999997
No 271
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.3e-11 Score=89.22 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=89.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
.++.=++++|+-..|||||+..+-..+........+.. -..+.+..+. ..-.+.++||||++.|..++..-..-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 35667899999999999999988877765554444432 3355666542 223589999999999999998888889999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY 128 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~ 128 (139)
|+|+++++.-.-+.. + =++..+. .+.|++++.||+|++..+|.
T Consensus 83 ILVVa~dDGv~pQTi-E-AI~hak~--a~vP~iVAiNKiDk~~~np~ 125 (509)
T COG0532 83 ILVVAADDGVMPQTI-E-AINHAKA--AGVPIVVAINKIDKPEANPD 125 (509)
T ss_pred EEEEEccCCcchhHH-H-HHHHHHH--CCCCEEEEEecccCCCCCHH
Confidence 999999876443333 1 2233333 58999999999999977763
No 272
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.9e-11 Score=90.10 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=87.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+++.-+-++|+-.-|||||+..|-+..........+.... ...+.... .-.+.+.||||+..|..|+..--.-+|++|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4567789999999999999998887766544333332221 33344332 246899999999999999998888899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY 128 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~ 128 (139)
+|+.++|...-+.. + -++..+. .+.|++++.||+|.+.+++.
T Consensus 230 LVVAadDGVmpQT~-E-aIkhAk~--A~VpiVvAinKiDkp~a~pe 271 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL-E-AIKHAKS--ANVPIVVAINKIDKPGANPE 271 (683)
T ss_pred EEEEccCCccHhHH-H-HHHHHHh--cCCCEEEEEeccCCCCCCHH
Confidence 99998876443333 1 1222222 68999999999999987763
No 273
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.26 E-value=6.1e-11 Score=84.64 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=69.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC----------Ccee-eeeeEEEEECCeEEEEEEEeCCCcccc-------
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----------PTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY------- 67 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 67 (139)
.++|+++|.+|+|||||++.+++........ .+.. ......+.-++..+.+.++||||-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999865433310 1111 112334555778899999999993210
Q ss_pred -----------cc-------cccccc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 68 -----------NR-------LRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 68 -----------~~-------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.. .....+ ..+|++++..+.+. ..+..+ -+..+++.+...++|.|..|+|....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~---Di~~mk~Ls~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPL---DIEFMKRLSKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HH---HHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHH---HHHHHHHhcccccEEeEEecccccCHH
Confidence 00 000111 24688888888653 233333 334555555678999999999987443
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.26 E-value=1.6e-10 Score=87.71 Aligned_cols=119 Identities=20% Similarity=0.282 Sum_probs=87.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+.+.++|+.++|||.+++.|+++.+...+..+....+. ..+...++.-.+.+-|.+-. ....+.... ..+|+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 46789999999999999999999999888766666555552 33344455555677776654 222222222 7899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++||.+++.+|.-+ ...++..... ...|+++|++|+|+....
T Consensus 501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVP 542 (625)
T ss_pred EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhh
Confidence 99999999999998 4455444443 689999999999997554
No 275
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.25 E-value=1.1e-11 Score=79.58 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=63.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-ccccccc---ccccCccEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRLRP---LSYRGADVFIL 83 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~~~---~~~~~~~~~i~ 83 (139)
||+++|+.|+|||||++++.+...... .|... .+.+ .++||||.- +.+.+.. ..-.++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq~i------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQAI------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--cccee------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999988654322 22111 1112 458999954 2222222 22358899999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+.|++++.+.-.- .+...+ +.|++=|.||+|+.
T Consensus 70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLP 102 (143)
T ss_pred EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCc
Confidence 9999986544332 222222 47999999999998
No 276
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.24 E-value=8.3e-11 Score=87.55 Aligned_cols=82 Identities=27% Similarity=0.236 Sum_probs=55.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce-eeee-eEEEE-------------------EC-CeEEEEEEEeCCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNF-SANVV-------------------VD-GSTVNLGLWDTAG 63 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~-~~~~~-------------------~~-~~~~~~~i~D~~g 63 (139)
+||.++|.||||||||++++.+..... .+..++ .... ...+. .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876543 222121 1111 10100 11 2347799999999
Q ss_pred c----cccccccccc---ccCccEEEEEEeCC
Q 032516 64 Q----EDYNRLRPLS---YRGADVFILAFSLI 88 (139)
Q Consensus 64 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 88 (139)
. +..+.+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3344444455 78999999999996
No 277
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.24 E-value=4.5e-11 Score=88.88 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=83.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCC-C-------ce----eee-eeEEEEECCeEEEEEEEeCCCcccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYV-P-------TV----FDN-FSANVVVDGSTVNLGLWDTAGQEDYNR 69 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~-~-------~~----~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~ 69 (139)
...+|+++.+-..|||||+..++.. .|..... . .. +.. ..+...+++..+.++|.||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 4568999999999999999999864 3332211 0 00 111 122223455567899999999999999
Q ss_pred cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
..+..++-.|++++++|+.+.---+. ++.++.--. .+.+-|+|.||+|.+.++|
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARP 137 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCH
Confidence 99999999999999999976533222 233332222 4677888999999998776
No 278
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=5.9e-11 Score=88.59 Aligned_cols=118 Identities=24% Similarity=0.203 Sum_probs=77.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccc--------cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNR--------LRPL 73 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~--------~~~~ 73 (139)
..++|+++|.||||||||+|.+.+++..- ....|+-+.....+++++. ++.+.||+|--+ -.. ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--PVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--EEEEEeccccccccCChhHHHhHHHHHH
Confidence 45899999999999999999999976432 2222322233455666664 589999999544 111 1233
Q ss_pred cccCccEEEEEEeC--CCHHHHHHHHHHHHHHHhhhC-------CCCCEEEEeecCCcccc
Q 032516 74 SYRGADVFILAFSL--ISKASYENVAKKWIPELRHYA-------PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 74 ~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~l~~~~-------~~~~vivv~nK~D~~~~ 125 (139)
.++.+|.+++|+|+ ++-++-..+ ...+.....-. ...+++++.||.|+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 46789999999998 433333333 33333332211 34789999999998644
No 279
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.20 E-value=2.2e-10 Score=78.79 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=65.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------c---c
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------R---P 72 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~---~ 72 (139)
++|+++|.+|+||||++|.+++...-.... +.+..........++. .+.++||||-.+.... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999865432211 1111122333355664 5899999995332111 0 1
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccCc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~~~ 127 (139)
....+.|++++|+.++ .+..-....++.+.+... -..++||.|..|....+.
T Consensus 79 ~~~~g~ha~llVi~~~---r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG---RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HTTT-ESEEEEEEETT---B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred hccCCCeEEEEEEecC---cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 1234689999999987 232222333444433321 135888889888765554
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.19 E-value=9.4e-11 Score=84.21 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=78.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCcc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGAD 79 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~~ 79 (139)
-|-++|.||+|||||++.+.+.+- ...|..|+-.+.--.+...+ .-.+.+=|.||.-+ -..+-..|+ ..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 367899999999999999988542 33444444333211222222 22489999998422 222333444 5678
Q ss_pred EEEEEEeCCCHHH---HHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516 80 VFILAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~ 126 (139)
.++.|+|++..+. .++. +.+..++..+. .+.|.+||+||+|+...+
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~ 291 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE 291 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCH
Confidence 9999999986653 6666 77788888775 579999999999966444
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.18 E-value=2.8e-10 Score=78.94 Aligned_cols=110 Identities=21% Similarity=0.164 Sum_probs=68.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.....|+++|.+|+|||||++.+....-........+. ..+ ......++.++||||.. ..+. ...+.+|.+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 34577999999999999999998864211111111111 111 11234568999999864 2221 23578999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~nK~D~~~ 124 (139)
++|.+....... ..++..+.. .+.|. ++|.||+|+..
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~--~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQV--HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHH--cCCCeEEEEEeccccCC
Confidence 999875443322 345555544 34674 55999999863
No 282
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.16 E-value=2.6e-10 Score=75.24 Aligned_cols=63 Identities=22% Similarity=0.155 Sum_probs=45.1
Q ss_pred EEEEEeCCCccc----ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 032516 55 NLGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (139)
Q Consensus 55 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~ 120 (139)
.+.++|+||... .......+++.+|++++|.+++..-+-.+. +.+.+...... ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTTC--SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCCC--CeEEEEEcCC
Confidence 377999999643 224567788999999999999876555554 66666666543 4489999985
No 283
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.9e-10 Score=84.39 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=76.2
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhC--CCCC--------------CCC--------Cceeee-----e-eEEEEECC
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------DYV--------PTVFDN-----F-SANVVVDG 51 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~--------------~~~--------~~~~~~-----~-~~~~~~~~ 51 (139)
.....++++++|+..+|||||+-|++.+ .+.+ +.. .+.++. . ........
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3467899999999999999999998753 1111 000 000000 0 01122233
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHH--HHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE--NVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+.+.|.|+||+.+|-...-.-..++|+.|+|+|+.+.+ .|. ...++-. .+.+...-..++++.||+|++.-+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccC
Confidence 4467999999998887776666678899999999998763 111 0001111 111111234588999999998544
Q ss_pred c
Q 032516 127 P 127 (139)
Q Consensus 127 ~ 127 (139)
+
T Consensus 162 e 162 (428)
T COG5256 162 E 162 (428)
T ss_pred H
Confidence 3
No 284
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.7e-10 Score=88.90 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=86.0
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCC---------CCCceeeeeeEEEE------------ECCeEEEEEEEeC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSANVV------------VDGSTVNLGLWDT 61 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~---------~~~~~~~~~~~~~~------------~~~~~~~~~i~D~ 61 (139)
+....++.++|+-..|||+|+.-+....-.+- |..+.-.+..+.+. .+++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34678899999999999999988876543221 11111111111111 1456678999999
Q ss_pred CCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
||+-.|.......++.+|++++++|+.+...++. +..++..-+ .+.|+.+|.||.|+..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDRLI 263 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHHHH
Confidence 9999999888889999999999999998888876 344444433 5799999999999873
No 285
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.4e-10 Score=85.76 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh--CCC------CCCCCC------------ceeeee-eEEEEECCeEEEEEEEeCCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS--NTF------PTDYVP------------TVFDNF-SANVVVDGSTVNLGLWDTAG 63 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~--~~~------~~~~~~------------~~~~~~-~~~~~~~~~~~~~~i~D~~g 63 (139)
++..++||-+|.+|||||.++++- +.. ..+... ..+... +..++.++..+.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 566789999999999999998863 111 000000 011222 22345577778899999999
Q ss_pred cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF 129 (139)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~ 129 (139)
+++|.......+..+|.+++|.|+...-.-+.+ .+.+ +.+ ..++||+=..||.|.+..+|..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfe-Vcr-lR~iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFE-VCR-LRDIPIFTFINKLDREGRDPLE 152 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHH-HHh-hcCCceEEEeeccccccCChHH
Confidence 999999888889999999999998654333332 1111 122 1589999999999999888764
No 286
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.11 E-value=1.4e-10 Score=85.16 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=59.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCce--eeeee-EEEEECCeEEEEEEEeCCCccccccccccc-----
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLS----- 74 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----- 74 (139)
+.+++|+++|.+|+|||||+|.+.+-.-.+. ..++. ++... ..... ...-.+.+||.||......-...|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3578999999999999999999975322222 12221 11111 11111 222248999999964322222223
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+..-|.+|++.+- .|.+.+-.+...+++ .+.|+.+|-+|+|..
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~--~gK~fyfVRTKvD~D 154 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR--MGKKFYFVRTKVDSD 154 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH--TT-EEEEEE--HHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH--cCCcEEEEEeccccc
Confidence 4556877777552 444443455666666 468999999999973
No 287
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.05 E-value=2.3e-09 Score=83.37 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=71.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC-CCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------c---cc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------L---RP 72 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~---~~ 72 (139)
..++|+++|.+|+||||++|.+++.. +..... +.+..........++ ..+.++||||-.+... + ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 35789999999999999999999865 332211 111111122222343 4699999999764321 1 11
Q ss_pred cccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccc
Q 032516 73 LSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFC 125 (139)
Q Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~ 125 (139)
.+++ .+|++++|..++......+ ...+++.+.+... =.-+|||.|+.|....
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~e-D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSN-DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHH-HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2333 4789999987653322212 2345555554432 1458899999998753
No 288
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.01 E-value=2.4e-09 Score=87.37 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECC--e--------------EEEEEEEeCCCcccccccccccccCcc
Q 032516 17 VGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG--S--------------TVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (139)
Q Consensus 17 ~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~--------------~~~~~i~D~~g~~~~~~~~~~~~~~~~ 79 (139)
++||||+.++-+-.........+.... ...+..+. + .-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999987665444333332221 22222221 0 012899999999999888877888999
Q ss_pred EEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 80 VFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 80 ~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
++++|+|+++ +++++.+ . .++. .++|+++|+||+|+.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCc
Confidence 9999999986 4555444 2 3333 368999999999996
No 289
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.00 E-value=4.8e-10 Score=84.09 Aligned_cols=120 Identities=16% Similarity=0.054 Sum_probs=80.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--cccc-------ccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR-------PLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~-------~~~ 74 (139)
+...++++|.||||||||++.....+... .|..|+-..+.... +.....+++.||||-.+. +... ...
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 45679999999999999998888766543 34444333333333 344466999999995432 1110 011
Q ss_pred ccCccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 75 YRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
-+-..+++++.|++..- |..+- -.++..++....|.|+++|.||+|......
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 12234788888998763 45554 567777888778999999999999874443
No 290
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.99 E-value=6.4e-09 Score=72.61 Aligned_cols=69 Identities=19% Similarity=0.077 Sum_probs=43.9
Q ss_pred EEEEEEeCCCcccc-------------cccccccccCc-cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 032516 54 VNLGLWDTAGQEDY-------------NRLRPLSYRGA-DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (139)
Q Consensus 54 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK 119 (139)
..+.++|+||-... +.+...|+++. +.+++|+|+...-.-... ..+.+.+.. .+.++++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 56889999997421 22455567744 588888887543221121 234444444 46899999999
Q ss_pred CCcccc
Q 032516 120 LGKIFC 125 (139)
Q Consensus 120 ~D~~~~ 125 (139)
+|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998753
No 291
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.99 E-value=1.8e-09 Score=81.85 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=71.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeeeEE------------E--EEC--------------
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSAN------------V--VVD-------------- 50 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~---~~~~~~~--~~~~~~~~~------------~--~~~-------------- 50 (139)
...++|.++|+-..|||||+..+..-. +...... |...-|... . ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 456899999999999999999988531 1111000 111111000 0 000
Q ss_pred --CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 51 --GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 51 --~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.....+.++|+||+++|-......+..+|++++|+|++++ ..-+.. +.+ ..+... .-.+++++.||+|+..
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccC
Confidence 0023689999999998866555667789999999999864 122221 222 222221 2246899999999863
No 292
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.98 E-value=6.7e-09 Score=74.40 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=60.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cc---ccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YN---RLRPLSY 75 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~ 75 (139)
+.-..+.++|.|+||||||++.+.+-+... .|..|+......-+ .++..++++.|+||--. -+ ...-...
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l--~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML--EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE--eecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 345679999999999999999999866543 33333333222223 44556799999998422 11 1233456
Q ss_pred cCccEEEEEEeCCCHHH-HHHH
Q 032516 76 RGADVFILAFSLISKAS-YENV 96 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s-~~~~ 96 (139)
++||.+++|.|+....+ .+.+
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i 160 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDII 160 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHH
Confidence 89999999999986655 4444
No 293
>PRK13768 GTPase; Provisional
Probab=98.97 E-value=9.8e-10 Score=77.45 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=46.3
Q ss_pred EEEEEeCCCcccc---ccccccccc---C--ccEEEEEEeCCCHHHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 55 NLGLWDTAGQEDY---NRLRPLSYR---G--ADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 55 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~~-~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.+.+||+||+.+. +...+.+++ . .+++++++|++......... ..|+........+.|+++|.||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999998653 333322222 2 78999999996544332221 2333333333357999999999999755
Q ss_pred Cc
Q 032516 126 DP 127 (139)
Q Consensus 126 ~~ 127 (139)
++
T Consensus 178 ~~ 179 (253)
T PRK13768 178 EE 179 (253)
T ss_pred hh
Confidence 43
No 294
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.94 E-value=7.9e-09 Score=74.25 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=61.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCc----cE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA----DV 80 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~ 80 (139)
--+|+++|+.++|||||+.++...+ ..+..+..+..|- ..-...+....+.+|-..|......+.+..+... ..
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 3579999999999999999998765 2232233333221 1111223346688998888776666555554332 36
Q ss_pred EEEEEeCCCHHHH-HHHHHHHHHHHh
Q 032516 81 FILAFSLISKASY-ENVAKKWIPELR 105 (139)
Q Consensus 81 ~i~v~d~~~~~s~-~~~~~~~~~~l~ 105 (139)
+|++.|++++-.+ +.+ +.|..-+.
T Consensus 131 viltasms~Pw~~lesL-qkWa~Vl~ 155 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESL-QKWASVLR 155 (473)
T ss_pred EEEEEecCCcHHHHHHH-HHHHHHHH
Confidence 7778899999444 444 66665544
No 295
>PRK09866 hypothetical protein; Provisional
Probab=98.94 E-value=1.1e-08 Score=79.49 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccc--c---ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDY--N---RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~--~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.++.+.||||-..- + ......++.+|++++|+|.++.-+..+ +.+.+.+++...+.|+++|.||+|+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 34678899996532 1 122236889999999999987544333 345666665433469999999999853
No 296
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.1e-09 Score=74.27 Aligned_cols=115 Identities=13% Similarity=0.213 Sum_probs=75.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCcccccc---cccccccCccEEE
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVFI 82 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i 82 (139)
.+|+++|...+||||+. +....++.+..+-..+...+.. -.+.+.-+.+++||.|||-.+.. -....++++.+++
T Consensus 28 p~ilLMG~rRsGKsSI~-KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQ-KVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhh-heeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 55999999999999965 5555566555333222221111 11334668899999999986543 2345589999999
Q ss_pred EEEeCCCH--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 83 LAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+|.|+.+. +.+..+ ........+.+|++.+-+..+|.|-.
T Consensus 107 fvIDaQddy~eala~L-~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARL-HMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EEEechHHHHHHHHHH-HHHhhheeecCCCceEEEEEEeccCC
Confidence 99997543 233333 23333334445899999999999976
No 297
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=4e-09 Score=68.00 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 64 (139)
+++++|.+|+|||||+|++..............+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999876542211111111222333444 4799999995
No 298
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.91 E-value=2.1e-09 Score=75.53 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=66.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh---CCCCCCCCCcee-----eeeeEEEEE--------------------------
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS---NTFPTDYVPTVF-----DNFSANVVV-------------------------- 49 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~-------------------------- 49 (139)
+++.-|+++|..|||||||++|+.. .+..+.|.-..+ ..+...+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 4567899999999999999999864 233322221111 011111111
Q ss_pred ---------------CCeEEEEEEEeCCCccc-cc-----ccccccccCc--cEEEEEEeCC---CHHHHHHHHHHHHHH
Q 032516 50 ---------------DGSTVNLGLWDTAGQED-YN-----RLRPLSYRGA--DVFILAFSLI---SKASYENVAKKWIPE 103 (139)
Q Consensus 50 ---------------~~~~~~~~i~D~~g~~~-~~-----~~~~~~~~~~--~~~i~v~d~~---~~~s~~~~~~~~~~~ 103 (139)
.....+..++|||||-+ |. ++....+... .++++++|.. ++..|-.-..+-...
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 11235688999999853 21 1222233333 3455555542 233333221222333
Q ss_pred HhhhCCCCCEEEEeecCCcccc
Q 032516 104 LRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 104 l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+.+ -..|.+++.||+|+..+
T Consensus 177 lyk--tklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 177 LYK--TKLPFIVVFNKTDVSDS 196 (366)
T ss_pred HHh--ccCCeEEEEeccccccc
Confidence 333 57999999999999543
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.91 E-value=4.9e-10 Score=78.26 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=35.5
Q ss_pred EEEEEeCCCccccccccccc------c--cCccEEEEEEeCC---CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 55 NLGLWDTAGQEDYNRLRPLS------Y--RGADVFILAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 55 ~~~i~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+.++|||||.++...+... + ...-++++++|.. ++..|-.. .++.......-+.|.+.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence 78999999998764433222 2 2345788888875 33444332 1222222222479999999999997
Q ss_pred c
Q 032516 124 F 124 (139)
Q Consensus 124 ~ 124 (139)
.
T Consensus 170 ~ 170 (238)
T PF03029_consen 170 S 170 (238)
T ss_dssp -
T ss_pred c
Confidence 5
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.89 E-value=3.4e-08 Score=73.43 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=73.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC----CCC-------------CCCCC----ceeeee----eEEEE-ECCeEEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN----TFP-------------TDYVP----TVFDNF----SANVV-VDGSTVNLGL 58 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~----~~~-------------~~~~~----~~~~~~----~~~~~-~~~~~~~~~i 58 (139)
..+-|.++|+-++|||||+++|.+. ... +.... |++.-+ ...+. .++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4577999999999999999999986 322 11111 111112 11222 2455678999
Q ss_pred EeCCCcccccc------c-----------------------cccccc-CccEEEEEE-eCC----CHHHHHHHHHHHHHH
Q 032516 59 WDTAGQEDYNR------L-----------------------RPLSYR-GADVFILAF-SLI----SKASYENVAKKWIPE 103 (139)
Q Consensus 59 ~D~~g~~~~~~------~-----------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 103 (139)
+||+|...-.. . ....+. .++..++|. |.+ .++...+..+.++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999432100 0 111233 567777776 653 123455556889999
Q ss_pred HhhhCCCCCEEEEeecCC
Q 032516 104 LRHYAPGVPIILVGTKLG 121 (139)
Q Consensus 104 l~~~~~~~~vivv~nK~D 121 (139)
+++ -++|++++.||+|
T Consensus 176 Lk~--~~kPfiivlN~~d 191 (492)
T TIGR02836 176 LKE--LNKPFIILLNSTH 191 (492)
T ss_pred HHh--cCCCEEEEEECcC
Confidence 998 4799999999999
No 301
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.89 E-value=1.2e-08 Score=74.36 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHH-------HHH--HHHHHHHHhhh--CCCCCEEEEeecCC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY-------ENV--AKKWIPELRHY--APGVPIILVGTKLG 121 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~--~~~~~~~l~~~--~~~~~vivv~nK~D 121 (139)
...+.++|.+||-.-+..|...+.++++++||.++++-+.. +.+ ...+.+.+... ..+.++++..||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 36789999999998888999999999999999998854332 222 02223333222 15799999999999
Q ss_pred ccc
Q 032516 122 KIF 124 (139)
Q Consensus 122 ~~~ 124 (139)
+-.
T Consensus 274 LFe 276 (354)
T KOG0082|consen 274 LFE 276 (354)
T ss_pred HHH
Confidence 964
No 302
>PTZ00258 GTP-binding protein; Provisional
Probab=98.88 E-value=2.1e-08 Score=74.45 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=52.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 68 (139)
..++|.++|.||+|||||+|.+.+..... ++..++-......+...+. ..++.+.|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 45799999999999999999997755432 2222221222222222211 3458999999954211
Q ss_pred ----ccccc---cccCccEEEEEEeCC
Q 032516 69 ----RLRPL---SYRGADVFILAFSLI 88 (139)
Q Consensus 69 ----~~~~~---~~~~~~~~i~v~d~~ 88 (139)
.+... .++++|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 12122 357899999999973
No 303
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.5e-08 Score=73.42 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=74.7
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCC------------CCCCCceeee--e-----------eEEEE-------E
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP------------TDYVPTVFDN--F-----------SANVV-------V 49 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~------------~~~~~~~~~~--~-----------~~~~~-------~ 49 (139)
+....++++.+|.-.-|||||+-|++.+.-. .....+.+.. + ...++ +
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 4567899999999999999999999865210 0000111000 0 00111 1
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY 128 (139)
Q Consensus 50 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~ 128 (139)
...+-++-+-||||++.|...--.-...+|..|+++|+... +.+- ......+.....=..++++.||+||.+-++.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~Q-TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQ-TRRHSFIASLLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHH-hHHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence 23445799999999998876544455678999999998432 2111 1111112111122458899999999966654
No 304
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.5e-08 Score=73.93 Aligned_cols=118 Identities=20% Similarity=0.155 Sum_probs=78.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CceeeeeeEEEEE-------------C--------------------
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVV-------------D-------------------- 50 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------~-------------------- 50 (139)
.=|+++|....|||||++.++..+|+.... ||++ .+...+.. +
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 448999999999999999999988865322 2222 22211111 1
Q ss_pred ------CeEEEEEEEeCCCcccc-----------cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCE
Q 032516 51 ------GSTVNLGLWDTAGQEDY-----------NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 113 (139)
Q Consensus 51 ------~~~~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v 113 (139)
.---.++++||||.-.- .....=+...+|.++++||+..-+--.+. +..+..++.+ .-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 00135889999994322 22333345789999999998766655665 6677777764 4567
Q ss_pred EEEeecCCccccCcc
Q 032516 114 ILVGTKLGKIFCDPY 128 (139)
Q Consensus 114 ivv~nK~D~~~~~~~ 128 (139)
-||.||+|.++..++
T Consensus 215 RVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQL 229 (532)
T ss_pred EEEeccccccCHHHH
Confidence 889999999766553
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.82 E-value=6.5e-08 Score=71.19 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=51.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECC---------------eEEEEEEEeCCCccccc--
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDYN-- 68 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~~~-- 68 (139)
++|.++|.||+|||||+|++.+..... ++..++-......+.+.+ ...++.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999866322 222222111111222222 11358999999954311
Q ss_pred --ccccc---cccCccEEEEEEeCC
Q 032516 69 --RLRPL---SYRGADVFILAFSLI 88 (139)
Q Consensus 69 --~~~~~---~~~~~~~~i~v~d~~ 88 (139)
.+... .++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11122 357899999999984
No 306
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=2.4e-08 Score=65.48 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=34.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG 63 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g 63 (139)
...+++++|.||+|||||+|++........ .+..+... ...+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 457899999999999999999998654221 11111111 11122222 278999998
No 307
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.80 E-value=4.3e-08 Score=69.78 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=49.5
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCcccc----c
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY----N 68 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~ 68 (139)
+.++|.||||||||+|++.+..... .+..++-......+.+.+. ...+.++|+||-.+- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 4789999999999999999876532 2222221122222222221 235999999995421 1
Q ss_pred cccccc---ccCccEEEEEEeCC
Q 032516 69 RLRPLS---YRGADVFILAFSLI 88 (139)
Q Consensus 69 ~~~~~~---~~~~~~~i~v~d~~ 88 (139)
.+...+ ++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 121222 56899999999873
No 308
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=2.6e-08 Score=66.41 Aligned_cols=55 Identities=24% Similarity=0.152 Sum_probs=35.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG 63 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g 63 (139)
..++++++|.||+|||||+|++.+...... .+..+... ...+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 347999999999999999999998654221 11112111 12222332 488999998
No 309
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.78 E-value=5.6e-08 Score=70.72 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=74.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC----------CCceeee-eeEEEEECCeEEEEEEEeCCCcccc------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY------ 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~------ 67 (139)
..++|+++|++|+|||||+|.++........ .+++... +...+.-++....+.++||||--++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 3689999999999999999999986332221 1222222 2334455778899999999993221
Q ss_pred --------------------ccccccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 68 --------------------NRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 68 --------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+..+...+. .+|++++....+ +..+..++ +..+++.++.+-+|-|..|+|..-.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLD---IEAMKRLSKRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHH---HHHHHHHhcccCeeeeeeccccCCH
Confidence 011111232 357777776644 44555553 3445555566889999999998644
Q ss_pred C
Q 032516 126 D 126 (139)
Q Consensus 126 ~ 126 (139)
+
T Consensus 178 ~ 178 (373)
T COG5019 178 D 178 (373)
T ss_pred H
Confidence 4
No 310
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.77 E-value=2.9e-08 Score=65.96 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=37.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~ 64 (139)
..++++++|.+|+|||||++++....+... .+..+... ...+..+ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999998765321 11111222 2223333 34789999994
No 311
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=9.3e-08 Score=69.87 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=73.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC---------CCceeee-eeEEEEECCeEEEEEEEeCCCccc-------cc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY---------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQED-------YN 68 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~-------~~ 68 (139)
.+.++++|++|.|||||+|.++...+.... ..+.... ....+.-++..+.+.+.||||--+ |+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 488999999999999999998876443321 0111111 122334467788999999999321 10
Q ss_pred ------------------cccccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 69 ------------------RLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 69 ------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
.+....+. .+|++++....+ +..+..+ =+..+++.+....++-|.-|+|....++
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~---Di~~Mk~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPL---DIEFMKKLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHh---hHHHHHHHhccccccceeeccccCCHHH
Confidence 11112233 467777777654 3344444 3445555556788999999999874443
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.74 E-value=5.4e-08 Score=63.60 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=37.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEE-EECCeEEEEEEEeCCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG 63 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g 63 (139)
...+++++|.+|+||||+++++.+... ....++.+....... ..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997543 222333333332222 2222 589999998
No 313
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=4.2e-08 Score=76.86 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=82.0
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCC--CCC------CCCCceeeeeeEEEEE-------CCeEEEEEEEeCCCccc
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------DYVPTVFDNFSANVVV-------DGSTVNLGLWDTAGQED 66 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~------~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~ 66 (139)
.++...+++++.+-.-|||||+..++... ..+ +...+.+++.++.++. -.+++.++++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 45678899999999999999999887532 111 1111222333333332 23568899999999999
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|.+......+-+|++++++|+.+...-+.. ..+.+... ++...++|.||+|..
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKIDRL 137 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhhhH
Confidence 999999999999999999999876544443 21222111 357789999999954
No 314
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.71 E-value=6.9e-08 Score=68.95 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=37.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..++++++|.||+|||||+|++.+...... ..+.. +.....+..+. .+.++||||..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~-T~~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV-TKGQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe-ecceEEEEeCC---CEEEEECCCcc
Confidence 458899999999999999999997653222 11211 11122233332 37999999973
No 315
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.69 E-value=4.3e-08 Score=68.83 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=49.2
Q ss_pred ccccccccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+++..+...+++++|++++|||++++. +++.+ +.|+..+.. .++|+++|+||+|+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCC
Confidence 567778888999999999999999887 89888 888877654 6899999999999963
No 316
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=1.2e-07 Score=68.05 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=37.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..++++++|.|||||||++|++.+...... ..+..... ...+..+. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA-QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE-EEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998654222 12221111 12233333 37899999974
No 317
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.4e-07 Score=72.11 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=76.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC--------------------CCCCCCC----Cc-----eeee-eeEEEEECCeE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN--------------------TFPTDYV----PT-----VFDN-FSANVVVDGST 53 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~--------------------~~~~~~~----~~-----~~~~-~~~~~~~~~~~ 53 (139)
...+.++++|+-.+|||||.-+++.+ +..-.|. .| .+.. ......++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 34688999999999999999887643 1000000 00 0001 11223345555
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHHHH--HHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--AKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
..+.+.|+||+-+|-...-.-...+|+.++|+|++..+ .|+.- .++....++.. .-.-++|+.||+|++.=++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH
Confidence 67999999999888876666677889999999987442 22210 02222222222 2345889999999984443
No 318
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=1.8e-07 Score=64.79 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=70.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC---------CCCceeeee-eEEEEECCeEEEEEEEeCCCcccc---ccc-
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY---NRL- 70 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~---~~~- 70 (139)
..++|+++|.+|.|||||+|.++....... ...|++... +..+.-++...++.++||||--+. ...
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 368999999999999999999886433221 111111111 234445777899999999994321 111
Q ss_pred ----------------------ccccccC--ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 71 ----------------------RPLSYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 71 ----------------------~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
++..+.+ +|++++....+ ..++..++-.+++.+.+ -+.++-|.-|+|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccc
Confidence 1112323 45566655543 56666665556665554 35678888899975
No 319
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.65 E-value=2e-08 Score=76.35 Aligned_cols=112 Identities=29% Similarity=0.425 Sum_probs=87.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
-+|+-|+|..++|||+|++||+.+.|.+...+ .+..|.+.+..++....+-+.|-+|... -+|-...|++||||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 47999999999999999999999999877544 4556777777888888888888776322 24567889999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
.+.+.++++.+ ..+...+..+. ..+|.++++++.=...
T Consensus 104 ~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~ 143 (749)
T KOG0705|consen 104 SVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISA 143 (749)
T ss_pred EeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhc
Confidence 99999999998 66665554332 6788889988755443
No 320
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.62 E-value=4.6e-07 Score=68.91 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=62.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EEE--CCeEEEEEEEeCCCcccccccccccccCc----c
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGA----D 79 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~ 79 (139)
-.|+|+|..++|||||+.+|.... .+.++.+..|.+. +.- ......+++|-..|...+..+.+..+... -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 579999999999999999986543 2334455555332 211 12345689999988666666655554421 3
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHH
Q 032516 80 VFILAFSLISKASYENVAKKWIPEL 104 (139)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~l 104 (139)
.+|+|.|++.|..+-+-.+.|+..+
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHH
Confidence 7888889999966543335555544
No 321
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.62 E-value=4.1e-08 Score=69.07 Aligned_cols=115 Identities=16% Similarity=0.050 Sum_probs=71.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCC----------ccccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP 72 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 72 (139)
..+..++++|.+|+|||||++.++..+....... ..+.. ..+..-...-.+.+.|.|| -+++..+.+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T--q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT--QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc--eeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 4568999999999999999999988654333222 22222 2222112223478899999 234555667
Q ss_pred ccccCccE---EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 73 LSYRGADV---FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 73 ~~~~~~~~---~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.|+.+.+- ++++.|++ ..++..+...++.+-+ .++|..+|.||||...
T Consensus 212 ~Y~leR~nLv~~FLLvd~s--v~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDAS--VPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHhhhhhheeeeeeecc--CCCCCCChHHHHHHhh--cCCCeEEeeehhhhhh
Confidence 77766543 33444544 2344443445555555 5799999999999873
No 322
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=68.58 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=39.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..+++.++|.|||||||++|++.+...... .+..+.+. ...+..+.. +.++||||--
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 458899999999999999999998765221 12222222 233444443 8999999954
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.56 E-value=1.5e-07 Score=63.55 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
...++++|.+|+|||||+|++....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999854
No 324
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=4.3e-07 Score=59.40 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=35.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 63 (139)
....++++|.+|+||||++|.+.+..... ...+..... ...+..+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~-~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS-QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc-eEEEEec---CCEEEEECCC
Confidence 45779999999999999999999865321 111111111 1122222 2489999998
No 325
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.5e-07 Score=71.91 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=75.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----eeeeeEE---------EEEC----CeEEEEEEEeCCCccccc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNFSAN---------VVVD----GSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~~----~~~~~~~i~D~~g~~~~~ 68 (139)
..-||++|+-.+|||-|+..+-...........+ +-.|... +..+ ...--+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4569999999999999998876643322222221 1111100 0000 111237899999999999
Q ss_pred ccccccccCccEEEEEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 69 RLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.++......||.+|+|+|+-.. ++.+.+ +.|+. .+.|++|+.||+|+.
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhh
Confidence 9999999999999999998543 444333 34444 579999999999987
No 326
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.48 E-value=1.6e-07 Score=61.71 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=33.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCce---ee---eeeEEEEECCeEEEEEEEeCCCcccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTV---FD---NFSANVVVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~~~~~~i~D~~g~~~~ 67 (139)
--++++|++|||||||+|.++..... ....+.. +. ....-...++. -.++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 35899999999999999999986321 1111111 11 11222333333 478999996554
No 327
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.46 E-value=9.2e-07 Score=63.91 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+++.+.||+|.-... ...+..+|.++++-+.. +.+++ ..+...+. +.|.+++.||+|+...+
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGAT 188 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchh
Confidence 4678999999854211 12456677777774433 33444 22333332 46779999999997543
No 328
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.45 E-value=1.2e-06 Score=63.99 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=38.6
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
...+.++||+|.-.-... ....+|.++++.+....+.+..+ + ..+.+ ..-++|.||+|+..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k---~gi~E----~aDIiVVNKaDl~~ 208 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-K---KGIME----LADLIVINKADGDN 208 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-H---hhhhh----hhheEEeehhcccc
Confidence 367899999996532222 35678999999765555555444 2 11112 12379999999763
No 329
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4.2e-07 Score=64.74 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=73.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh---CCCCC---CCC--------Cceeee-eeEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS---NTFPT---DYV--------PTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~---~~~~~---~~~--------~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...+||..+|+-+-|||||...+.. ..+.. .|. ...+.. ....+.+....-.+...|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 3568999999999999999876543 11100 111 111111 12334444455668899999999886
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccccC
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLGKIFCD 126 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-~vivv~nK~D~~~~~ 126 (139)
..--.-..+.|+.|+|+.+++...-+.- +.++ +.++ -+. .++++.||+|+.+..
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTr-EHiL--larq-vGvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHIL--LARQ-VGVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcch-hhhh--hhhh-cCCcEEEEEEecccccCcH
Confidence 6443444567999999999886443332 2221 2222 234 477888999998643
No 330
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.1e-08 Score=74.32 Aligned_cols=117 Identities=17% Similarity=0.082 Sum_probs=87.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC--------CCCCCCCCc--------eeee-eeEEEEECCeEEEEEEEeCCCcccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTDYVPT--------VFDN-FSANVVVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~--------~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~ 67 (139)
+..+|-++.+-.+||||...|++.- ......+-+ .+.. ...-+..+.+...++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3467888999999999999998741 111111100 0111 1224456778889999999999999
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+-..+..++--|+++.|||.+.....+.+ ..|.+.-+ -++|-....||+|...+
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk---~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK---FKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc---cCCchhhhhhhhhhhhh
Confidence 99999999999999999999988877777 77876544 36899999999998643
No 331
>PRK12288 GTPase RsgA; Reviewed
Probab=98.43 E-value=3.4e-07 Score=67.35 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHhCC
Q 032516 9 CVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~ 30 (139)
++|+|.+|||||||+|+++...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999753
No 332
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.42 E-value=2.8e-06 Score=71.24 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=63.9
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCC------CCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS 74 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 74 (139)
.+++|++|+||||++.+- +-.|.-.. ....+..........++ -.++|++|..- ....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999876 33332111 11111111122233343 46999999321 11223333
Q ss_pred c---------cCccEEEEEEeCCCH-----HHH----HHHHHHHHHHHhhh-CCCCCEEEEeecCCcc
Q 032516 75 Y---------RGADVFILAFSLISK-----ASY----ENVAKKWIPELRHY-APGVPIILVGTKLGKI 123 (139)
Q Consensus 75 ~---------~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~ 123 (139)
+ +..+|+|+++|+.+- +.. ..+ ...++++.+. .-..||.|+.||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 2 347999999988643 222 222 3444444443 3689999999999986
No 333
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.7e-06 Score=63.03 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=67.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhC----CCCCCCCCce-eeee---eEEEEE-------CCeEEEEEEEeCCCcccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTV-FDNF---SANVVV-------DGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~----~~~~~~~~~~-~~~~---~~~~~~-------~~~~~~~~i~D~~g~~~~ 67 (139)
++-.+++-++|+-.+|||||.+++..- .|+....++. +... -..+.. .++..++.+.|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 445699999999999999999998752 2332222211 1111 111111 456688999999999753
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
-...-.--.-.|..++|+|+...-.-+...-.++.++.. ...++|.||+|..
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c----~klvvvinkid~l 135 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC----KKLVVVINKIDVL 135 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc----cceEEEEeccccc
Confidence 322111223357889999997553333321113333322 3456667777764
No 334
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.7e-06 Score=66.36 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=75.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeE-------------------------------------
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSA------------------------------------- 45 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~------------------------------------- 45 (139)
....||+|.|..++||||++|.++..+..+.... ++......
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3468999999999999999999987655443221 11100000
Q ss_pred ------EEEECCe-----EEEEEEEeCCCcc---cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCC
Q 032516 46 ------NVVVDGS-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV 111 (139)
Q Consensus 46 ------~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~ 111 (139)
.+..+.. .-++.+.|.||.. ...+-...+..++|++|+|.++-+.-+..+ +.++....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence 0000110 0136688888864 333344556788999999998865544444 4555554442 55
Q ss_pred CEEEEeecCCccccCccc
Q 032516 112 PIILVGTKLGKIFCDPYF 129 (139)
Q Consensus 112 ~vivv~nK~D~~~~~~~~ 129 (139)
-++++.||.|....+|..
T Consensus 263 niFIlnnkwDasase~ec 280 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPEC 280 (749)
T ss_pred cEEEEechhhhhcccHHH
Confidence 688999999988665543
No 335
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.7e-06 Score=60.51 Aligned_cols=116 Identities=14% Similarity=0.231 Sum_probs=72.4
Q ss_pred eeEEEEECCCCC--CHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 6 FIKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 6 ~~ki~iiG~~~~--GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+.-.++.|-+|+ ||.++++|+....|.....+.....+ ..++..++....+++-=.+--+++.--.-..-+...+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 345789999999 99999999999988766555444333 223322222222222211211111111111223456899
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
++||++..+.+..+ ..|+..-....-++ .+.+|||.|..
T Consensus 84 mvfdlse~s~l~al-qdwl~htdinsfdi-llcignkvdrv 122 (418)
T KOG4273|consen 84 MVFDLSEKSGLDAL-QDWLPHTDINSFDI-LLCIGNKVDRV 122 (418)
T ss_pred EEEeccchhhhHHH-Hhhccccccccchh-heecccccccc
Confidence 99999999999998 89988765533232 57889999986
No 336
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.6e-06 Score=62.41 Aligned_cols=83 Identities=22% Similarity=0.138 Sum_probs=53.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCce-eeee-eEEEE----------EC----CeEEEEEEEeCCCcc---
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTV-FDNF-SANVV----------VD----GSTVNLGLWDTAGQE--- 65 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~-~~~~-~~~~~----------~~----~~~~~~~i~D~~g~~--- 65 (139)
.+++-|+|.||||||||.|.+....-. .+|..++ +... ...+. .. -....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987643 2333222 2111 11111 01 124678999988843
Q ss_pred -ccccccccc---ccCccEEEEEEeCC
Q 032516 66 -DYNRLRPLS---YRGADVFILAFSLI 88 (139)
Q Consensus 66 -~~~~~~~~~---~~~~~~~i~v~d~~ 88 (139)
.-+.+-..| ++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 334444444 57899999999886
No 337
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.33 E-value=1.9e-05 Score=55.39 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=62.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc------cc-cccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY------NR-LRPLSY 75 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~-~~~~~~ 75 (139)
+...+++++|.|.+|||||+..+..-... ..|..|+.+...-.+.+++. .+++.|.||--+- +. ..-...
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence 44578999999999999999888764332 23344433333334455554 5899999984221 11 122345
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHH
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPE 103 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (139)
+.+|.++++.|++..+.-.++.+.=+..
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~ 165 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEA 165 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHH
Confidence 7789999999998776655443333333
No 338
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.33 E-value=4e-06 Score=61.90 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=53.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCceeeeeeEEEEECC---------------eEEEEEEEeCCCcccc--
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDY-- 67 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~~-- 67 (139)
+|+.++|.|++|||||++.+.+..- .. .|..++.......+.+.+ ....+.+.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 32 333332222222222222 2246889999995432
Q ss_pred --ccccc---ccccCccEEEEEEeCC
Q 032516 68 --NRLRP---LSYRGADVFILAFSLI 88 (139)
Q Consensus 68 --~~~~~---~~~~~~~~~i~v~d~~ 88 (139)
..+-. ..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12222 2367899999999874
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.29 E-value=1.6e-06 Score=64.22 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.++.++|.+|||||||+|+++...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999853
No 340
>PRK12289 GTPase RsgA; Reviewed
Probab=98.28 E-value=2.2e-06 Score=63.18 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHhCC
Q 032516 9 CVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~ 30 (139)
++|+|.+|||||||+|+++.+.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 341
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.28 E-value=3.4e-07 Score=57.27 Aligned_cols=97 Identities=22% Similarity=0.087 Sum_probs=61.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFIL 83 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~i~ 83 (139)
|++++|..|+|||||.+.+.+.....+ .|... .+++. ..+||||.-.-+..+ -....+++.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAv------e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAV------EFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--cccee------eccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999887654322 22221 22222 357899854322222 223467888888
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|-.+.++++.-.. .+... -..|+|=|.+|.|+.
T Consensus 71 v~~and~~s~f~p--~f~~~-----~~k~vIgvVTK~DLa 103 (148)
T COG4917 71 VHAANDPESRFPP--GFLDI-----GVKKVIGVVTKADLA 103 (148)
T ss_pred eecccCccccCCc--ccccc-----cccceEEEEeccccc
Confidence 8888877543221 12222 234588899999997
No 342
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.26 E-value=8.2e-06 Score=56.62 Aligned_cols=63 Identities=17% Similarity=0.060 Sum_probs=39.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCC--C-ceeeeeeEEEEECCeEEEEEEEeCCCcccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYV--P-TVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 67 (139)
+..-|.++|++++|||+|+|++++. .|.-... + |.+.-........+....+.++||+|....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence 4456899999999999999999987 5542211 1 111111110001123467999999997643
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=1.5e-06 Score=62.51 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
-.++++|.+|+|||||+|.++...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998754
No 344
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=7.1e-07 Score=68.75 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=82.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC-----CCCCC-CCcee----eeeeEEEE-------ECCeEEEEEEEeCCCcccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT-----FPTDY-VPTVF----DNFSANVV-------VDGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~-----~~~~~-~~~~~----~~~~~~~~-------~~~~~~~~~i~D~~g~~~~ 67 (139)
+..+|-+..+-.+||||+.+|.+... +.... ..++- ....+.++ .......++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44567788889999999999987521 11110 11110 00111111 2234678999999999999
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF 129 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~ 129 (139)
.-..+..++-.|++|++.+......-+.. ..|.++ ++ -++|-+...||+|+.-++++.
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~-~r--y~vP~i~FiNKmDRmGa~~~~ 175 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQM-KR--YNVPRICFINKMDRMGASPFR 175 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHH-Hh--cCCCeEEEEehhhhcCCChHH
Confidence 99889999999999999998766555554 455544 44 369999999999999877653
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=3.2e-06 Score=59.46 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.++++|.+|||||||+|++....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 57899999999999999999753
No 346
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.23 E-value=1.8e-06 Score=62.24 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=74.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 74 (139)
...-|.++|..|+|||||++.+......++. ...+-+.........+.. .+-+-||-|-- .|++.. ..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL-ee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL-EE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence 3456899999999999999999965544432 222222222222222222 36788888832 122211 23
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCccccC
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP----IILVGTKLGKIFCD 126 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~----vivv~nK~D~~~~~ 126 (139)
...+|.++-|.|++.|..-... +..+.-+++.. ++.| ++=|-||.|.....
T Consensus 255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~ 310 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE 310 (410)
T ss_pred HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccccccccc
Confidence 5678999999999999766665 66666676654 3333 45677999976444
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.22 E-value=7.1e-06 Score=59.50 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=55.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE---------------CCeEEEEEEEeCCCcccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV---------------DGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~~~i~D~~g~~~~ 67 (139)
.+.+|+-|+|.|+||||||.|.+.+....+..-|.. -+....++.+ ......++++|++|.-+-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 356899999999999999999999876654433322 2222222222 223577999999985432
Q ss_pred ----ccccccc---ccCccEEEEEEeCC
Q 032516 68 ----NRLRPLS---YRGADVFILAFSLI 88 (139)
Q Consensus 68 ----~~~~~~~---~~~~~~~i~v~d~~ 88 (139)
+.+-..+ ++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2222233 56789988888764
No 348
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.4e-06 Score=64.14 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=81.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCC--------CCCCCCceeeeeeEEEEE-----------------------CC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF--------PTDYVPTVFDNFSANVVV-----------------------DG 51 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-----------------------~~ 51 (139)
..+..++.++.+-..|||||...+....- ..++..+..++..+.+++ ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34667889999999999999998875311 111222222222222222 33
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
...-++++|.||+-+|.+.....++-.|+.++|+|.-+..-.+.- ..+.+.+.+ .+.=+++.||.|..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence 456789999999999999999999999999999999888666553 445555554 34456677999975
No 349
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.17 E-value=3.5e-06 Score=59.27 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH-------HHHHHHHHHHHHHhhhC-----CCCCEEEEeecC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVAKKWIPELRHYA-----PGVPIILVGTKL 120 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~ 120 (139)
.+.++++|.+||.+-+..|-+.+.++.++|+|...++-+ +-+.+ ++-++.++... ..+.+|+..||.
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL-~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRL-QEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHH-HHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 367899999999988889999999999999998766332 22222 22333333322 358899999999
Q ss_pred Ccc
Q 032516 121 GKI 123 (139)
Q Consensus 121 D~~ 123 (139)
|+.
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 987
No 350
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=3.2e-06 Score=62.68 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.++.++|.+|||||||+|+++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 478999999999999999999643
No 351
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.13 E-value=1.8e-05 Score=51.95 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+++.|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998865
No 352
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=7.2e-06 Score=58.19 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=73.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-----eEEEEECCeEEEEEEEeCCCcc-------cccccc-
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-----SANVVVDGSTVNLGLWDTAGQE-------DYNRLR- 71 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~- 71 (139)
-.++|+-+|..|.|||||+..+++-.|...+.+-..... ++...-.+..+++.+.||.|-- .|..+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 368999999999999999999999888765444322211 2222335667889999999831 111111
Q ss_pred ------cc-------------cccC--ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 72 ------PL-------------SYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 72 ------~~-------------~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+. .+++ +|++++....+ ..++..++....+.+.. ...||-++-|+|....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds---kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS---KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh---hhhhHHHHHHhhhhhH
Confidence 11 1333 45555555554 56677765555555544 4667777788887633
No 353
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=6.1e-06 Score=59.61 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.++++|.+|+|||||+|.++...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998753
No 354
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.06 E-value=4.5e-06 Score=59.82 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.+++|.+|||||||+|++..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 4689999999999999999863
No 355
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.04 E-value=2.5e-05 Score=42.24 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred CccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 032516 77 GADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLG 121 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D 121 (139)
-.+++++++|++... ++++- ..++++++...++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 357899999998764 55555 678888888888999999999998
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.03 E-value=2.3e-05 Score=59.11 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCcccccccccc------cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 53 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+++.++||+|........-. ...+.+.+++|.|++..+..... ...+.+. -.+.-+|.||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCC
Confidence 467999999996543221111 12346788999998654333222 2222221 13567888999963
No 357
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.92 E-value=1.8e-05 Score=60.21 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=39.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
.+.|-++|.|||||||.||.+.+.+.... .+|.+-+ .-.++.+... +.+-||||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSPS---VCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence 58899999999999999999999875443 2232222 2233434443 7899999953
No 358
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=6e-05 Score=58.43 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=68.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+.++-++++|+||.|||||+..++..- .. .++.........+.++.-.+.+.++| .+..++.. ..+-+|.+++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk---~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlL 139 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TK---QTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLL 139 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH-HH---hhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEE
Confidence 456888999999999999998776531 11 11111111111245666778999998 33333322 3356788999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+.|..-.=..+. ..+++.+..+. =..++-|.|..|+..
T Consensus 140 lIdgnfGfEMET--mEFLnil~~HG-mPrvlgV~ThlDlfk 177 (1077)
T COG5192 140 LIDGNFGFEMET--MEFLNILISHG-MPRVLGVVTHLDLFK 177 (1077)
T ss_pred EeccccCceehH--HHHHHHHhhcC-CCceEEEEeeccccc
Confidence 988764433334 35666666542 234788899999863
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.00054 Score=45.07 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=35.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 62 (139)
..+||.+-|+|||||||++.++.+.--... -..+-.+...+.-++..+=+.+.|..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 468999999999999999998875211111 11222234444455666667777766
No 360
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=4.3e-05 Score=63.66 Aligned_cols=112 Identities=24% Similarity=0.189 Sum_probs=60.2
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCC--CCC-CCceeeeeeEEEEECCeEEEEEEEeCCCccccc--------cccc-----
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFP--TDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLRP----- 72 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~----- 72 (139)
.+++|++|+||||++..- ..+|+ ... ........+..+. ..-.-.-.++||+|...-. ..|.
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 579999999999988422 11221 111 0111111112221 1111235788999843211 1222
Q ss_pred ----ccccCccEEEEEEeCCCH-----HH----HHHHHHHHHHHHhhh-CCCCCEEEEeecCCcc
Q 032516 73 ----LSYRGADVFILAFSLISK-----AS----YENVAKKWIPELRHY-APGVPIILVGTKLGKI 123 (139)
Q Consensus 73 ----~~~~~~~~~i~v~d~~~~-----~s----~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~ 123 (139)
.-.+..+|+|+..|+.+- .. ...+ ..-++++.+. .-..||.|+.||.|+.
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~L-R~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTL-RARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHH-HHHHHHHHHhhccCCceEEEEeccccc
Confidence 223457999999988643 11 1122 3334455443 3589999999999985
No 361
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.81 E-value=5.7e-05 Score=56.52 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=52.3
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHY-APGVPIILVGTKLGK 122 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~ 122 (139)
..+.++|++||..-+..|..++.+++++++|+++++= ..+.+....|-...... ..+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 4679999999998899999999999999999998632 23444323333333322 268999999999998
Q ss_pred cc
Q 032516 123 IF 124 (139)
Q Consensus 123 ~~ 124 (139)
..
T Consensus 316 f~ 317 (389)
T PF00503_consen 316 FE 317 (389)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 362
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.79 E-value=4.6e-06 Score=57.75 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhhC--CCCCEEEEeecC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA--PGVPIILVGTKL 120 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~ 120 (139)
.+.+.+.|.+||..-+..|-..+.+...+++++.+++- +..++- +.+...+-.+. .+.++++..||-
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEechh
Confidence 45566888888876666677777777666666554422 223332 33333333332 689999999999
Q ss_pred CccccC
Q 032516 121 GKIFCD 126 (139)
Q Consensus 121 D~~~~~ 126 (139)
|+.+.+
T Consensus 277 DlLEek 282 (359)
T KOG0085|consen 277 DLLEEK 282 (359)
T ss_pred hhhhhh
Confidence 997544
No 363
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=8.2e-05 Score=54.30 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=71.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh---C-------CCCCC----CCCceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS---N-------TFPTD----YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~---~-------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...++|--+|+-.-|||||...+.. . +|.+- +....+... ...+.+....-.+.=.||||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568899999999999999876542 1 11110 011111111 2334444444556778999999987
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+.--.--.+.|+.|+|+.++|..--+.= +.++ +.++..=..+++..||.|+.
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLV 183 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEeccccc
Confidence 6544444577999999999987544432 3222 12222223478888999997
No 364
>PRK08118 topology modulation protein; Reviewed
Probab=97.77 E-value=2.8e-05 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.||+++|++|||||||.+++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988753
No 365
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.77 E-value=2.6e-05 Score=52.27 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.||+++|+||+||||+.+++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998875
No 366
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00018 Score=53.98 Aligned_cols=111 Identities=18% Similarity=0.055 Sum_probs=69.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEE-EECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANV-VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
-|...|+-.-|||||++.+.+..-.. +...-.+.+....+ ..+..+..+.++|.||++++-...-.-+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778999999999999887753221 11111111111111 11223337999999999988766556667889999999
Q ss_pred eCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 86 SLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 86 d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+.++. ++.+.+ ..++.+. -...++|.||+|+.+
T Consensus 82 ~~deGl~~qtgEhL--~iLdllg----i~~giivltk~D~~d 117 (447)
T COG3276 82 AADEGLMAQTGEHL--LILDLLG----IKNGIIVLTKADRVD 117 (447)
T ss_pred eCccCcchhhHHHH--HHHHhcC----CCceEEEEecccccc
Confidence 99654 333333 2333332 245799999999964
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.75 E-value=2.1e-05 Score=52.98 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=38.0
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++.....+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCC
Confidence 57778889999999999999987531 12222222235689999999999864
No 368
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.75 E-value=2.7e-05 Score=48.45 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.|++.|.+||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 369
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.74 E-value=4.9e-05 Score=54.68 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=41.3
Q ss_pred cccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 72 PLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+..+.++|.+++|+|+.++. ++..+ +.|+..+.. .++|+++|+||+|+..
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLD 123 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCC
Confidence 34578999999999999887 88887 668777665 4799999999999953
No 370
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.74 E-value=4.1e-05 Score=56.62 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=39.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
.+.+.+-++|.||+||||++|++.....-.. ..+... ..-..+..+. .+.+.|+||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT-~smqeV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT-RSMQEVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch-hhhhheeccC---CceeccCCcee
Confidence 4578999999999999999999998776332 122221 1122333333 37899999943
No 371
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.70 E-value=4.1e-05 Score=49.22 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=35.5
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..++.+|++++|+|+.++.+... ..+.+.+....++.|+++|.||+|+..
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCC
Confidence 35678999999999988765442 233333333235789999999999853
No 372
>PRK07261 topology modulation protein; Provisional
Probab=97.70 E-value=3.9e-05 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.+|+|||||++.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 373
>PRK00098 GTPase RsgA; Reviewed
Probab=97.68 E-value=7.7e-05 Score=53.96 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=38.7
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
...++|.+++|+|++++.......+.|+..+.. .++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC
Confidence 358899999999998887665554777776654 579999999999995
No 374
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.67 E-value=0.00026 Score=45.49 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=62.0
Q ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH
Q 032516 11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (139)
Q Consensus 11 iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (139)
.-|.+|+|||++...+...-- .........+... ......+++.++|+|+... ......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-h
Confidence 446799999998865543210 1111111000000 0001116789999997542 22345788899999998865 5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 91 ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 91 ~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.++..+ ...++.+.+.....++.+|.|+.+..
T Consensus 79 ~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 555555 44555665544566788999999753
No 375
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.67 E-value=6.7e-05 Score=51.36 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
|.+++..-|.+.|++|+|||||++.+..
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 6777888899999999999999988864
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.66 E-value=0.00016 Score=51.67 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=37.3
Q ss_pred EEEEEEEeCCCccccccccc------------ccccCccEEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 032516 53 TVNLGLWDTAGQEDYNRLRP------------LSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTK 119 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK 119 (139)
.+++.++||+|........- ..-..++..++|.|++.. +.+... ..+.+.+ .+.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEEc
Confidence 36789999999764322110 111247889999998643 233332 2222221 245788899
Q ss_pred CCcc
Q 032516 120 LGKI 123 (139)
Q Consensus 120 ~D~~ 123 (139)
.|..
T Consensus 227 lDe~ 230 (272)
T TIGR00064 227 LDGT 230 (272)
T ss_pred cCCC
Confidence 9973
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.66 E-value=0.00015 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=19.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..--++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999977653
No 378
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.66 E-value=3.8e-05 Score=49.12 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|+++|+|||||||+++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999874
No 379
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00019 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.++++|++|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
No 380
>PRK12289 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.00013 Score=53.89 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=39.0
Q ss_pred cccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 70 LRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+....+.++|.+++|+|+.++. ....+ +.|+..... .++|+++|+||+|+..
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVS 134 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCC
Confidence 3344688999999999998775 44455 556655533 6799999999999963
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=97.61 E-value=7e-05 Score=54.98 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=35.9
Q ss_pred EEEEEEeCCCcccccccc----ccc--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 54 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+++.++||+|........ ... ..+.+.+++|.|++..+...+..+.+.+.+ ..--++.||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------GIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------CCCEEEEeeecCC
Confidence 568999999976432211 111 124678889999865432222113332211 2356777999973
No 382
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.60 E-value=8e-05 Score=53.56 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=37.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee------eeeEEEEECCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD------NFSANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..+.+.++|-||+|||||+|..............++. .....+.+.... .+.+.||||.-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil 207 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL 207 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence 4688999999999999999987764332221112211 111223333333 38899999953
No 383
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.59 E-value=0.00051 Score=43.27 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999988754
No 384
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.59 E-value=9.1e-05 Score=49.40 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=24.6
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
|+..+..-+.++|.+|+|||||+++++..
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 55666677899999999999999998864
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00021 Score=55.32 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.++|+|++|+||||++..+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999987764
No 386
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.55 E-value=0.00011 Score=47.98 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=34.3
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.++++|.+++|.|++++..-.. +.+...+.....+.|+++|.||+|+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 4678999999999988632211 334444443335689999999999963
No 387
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00012 Score=53.07 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcee--------------e-----eee--EEEEEC----CeEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVPTVF--------------D-----NFS--ANVVVD----GSTVNL 56 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~---~~~~~~~~~~--------------~-----~~~--~~~~~~----~~~~~~ 56 (139)
..++|-++|+-.-|||||++.+..-. +.+.-...+. . .|. ..+..- .-.-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 46899999999999999998876421 1100000000 0 000 001100 112458
Q ss_pred EEEeCCCcccccccccccccC---ccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 57 GLWDTAGQEDYNRLRPLSYRG---ADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 57 ~i~D~~g~~~~~~~~~~~~~~---~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
++.|.||++-.-+ .++.+ .|+.++|..+.++ ++-+.+ .-++.+.. ..++++-||+|+...+.
T Consensus 89 SfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIigi----k~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 89 SFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEIIGI----KNIIIVQNKIDLVSRER 157 (415)
T ss_pred EEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhhcc----ceEEEEecccceecHHH
Confidence 8999999985433 23333 4899999988755 454444 12222222 45899999999985443
No 388
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.55 E-value=5e-05 Score=49.52 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=36.0
Q ss_pred cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+.+....++++|.+++|+|++++..... ..+...+.. .+.|+++|.||+|+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhC
Confidence 4456677788999999999987643322 123332322 368999999999985
No 389
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.54 E-value=0.00099 Score=51.73 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=42.0
Q ss_pred EEEEEeCCCc-------------ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecC
Q 032516 55 NLGLWDTAGQ-------------EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120 (139)
Q Consensus 55 ~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~ 120 (139)
.+.+.|.||. +....+.+.|+.+.+++|+|.--. |++.-+...-+.+.+.- .+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 3668899983 223456788999999999997322 11111112222222222 357799999999
Q ss_pred Ccccc
Q 032516 121 GKIFC 125 (139)
Q Consensus 121 D~~~~ 125 (139)
|+.+.
T Consensus 490 DlAEk 494 (980)
T KOG0447|consen 490 DLAEK 494 (980)
T ss_pred chhhh
Confidence 99754
No 390
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.50 E-value=0.0012 Score=38.77 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=42.6
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEeC
Q 032516 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL 87 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 87 (139)
+++.|..|+||||+...+...--... . +....+ ++.++|+++....... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~--------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-K--------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-C--------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999977665311111 0 111122 6899999987543321 13455678888888876
Q ss_pred CC
Q 032516 88 IS 89 (139)
Q Consensus 88 ~~ 89 (139)
+.
T Consensus 69 ~~ 70 (99)
T cd01983 69 EA 70 (99)
T ss_pred ch
Confidence 53
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.49 E-value=0.00014 Score=41.01 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
|.+.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999888764
No 392
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.47 E-value=0.0014 Score=46.44 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=50.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----cc---cccccccC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NR---LRPLSYRG 77 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~---~~~~~~~~ 77 (139)
..++-++|-|.+||||++..+....-+ +.+..+.-....-.+ ..+..++++.|.||--+- +. ..-...+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~--~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVI--RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceE--eccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 357899999999999999887764321 122222211111122 234457999999984221 11 12223466
Q ss_pred ccEEEEEEeCCCHHH
Q 032516 78 ADVFILAFSLISKAS 92 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s 92 (139)
++.+++|.|+-.|-+
T Consensus 137 cnli~~vld~~kp~~ 151 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLS 151 (358)
T ss_pred ccEEEEEeeccCccc
Confidence 788888888876643
No 393
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00024 Score=52.65 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=44.0
Q ss_pred EEEEEeCCCccccccccccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 55 NLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 55 ~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
-+.++|.+|+.+|....-.-+. -.|..++|+++...-.... ++-+..+.. -++|++++.+|+|+...
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A--L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAA--LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHH--hCCCeEEEEEeeccccc
Confidence 3789999999988665444443 2577788888765533322 223333333 37999999999999533
No 394
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.45 E-value=7.8e-05 Score=49.00 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999988754
No 395
>PRK06217 hypothetical protein; Validated
Probab=97.45 E-value=0.00015 Score=48.73 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+|+++|.+||||||+..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 396
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.44 E-value=0.00017 Score=50.27 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-..+++|+++|+|||||||+.+++..
T Consensus 2 ~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 2 KLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345568899999999999999988764
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.43 E-value=0.00021 Score=48.93 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+.+...|.+.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999988765
No 398
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.42 E-value=7.6e-05 Score=55.37 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=42.1
Q ss_pred cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.++|..+...+.+.++++++|+|+.+.. ..|.+.+.+...+.|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCC
Confidence 5577888888888999999999986533 335555555545789999999999863
No 399
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.42 E-value=0.0011 Score=40.05 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=48.9
Q ss_pred EEEEC-CCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 9 i~iiG-~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
|.+.| ..|+||||+...+...-- ....+... +..+.. +.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl~------~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLL------IDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEEE------EeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56677 579999998866543211 11111111 111111 568999999875322 22667789999999886
Q ss_pred CCHHHHHHHHHHHHH
Q 032516 88 ISKASYENVAKKWIP 102 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (139)
+ ..++..+ ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 5666665 44544
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.40 E-value=0.00048 Score=51.45 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCcccccccc----cccccCc--cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516 53 TVNLGLWDTAGQEDYNRLR----PLSYRGA--DVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKI 123 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~----~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~ 123 (139)
.+++.++||.|...+.... ..++..+ .-..+|.+++. .-+.+ +..++.+.. .| --++.||.|..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dl-kei~~~f~~----~~i~~~I~TKlDET 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDL-KEIIKQFSL----FPIDGLIFTKLDET 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHH-HHHHHHhcc----CCcceeEEEccccc
Confidence 4679999999987654322 2233222 23455566653 22333 334444443 33 35777999964
No 401
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.40 E-value=0.00028 Score=48.37 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+..-|+++|++|+||||+++++...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45566889999999999999998754
No 402
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.40 E-value=0.0028 Score=44.16 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=31.4
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+++|.+++|.|.+ ..++... +.+.+...+. .=.++.+|.||.|..
T Consensus 153 ~~~vD~vivVvDpS-~~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPS-YKSLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCc-HHHHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence 56789999999987 4455554 4443333332 237899999999965
No 403
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.40 E-value=0.0013 Score=40.19 Aligned_cols=100 Identities=19% Similarity=0.123 Sum_probs=58.3
Q ss_pred EEEEC-CCCCCHHHHHHHHHhCCCCCCCCCce--eeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 9 i~iiG-~~~~GKssl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
|+++| ..|+||||....+...--........ +.+... + .++.++|+|+.... .....+..+|.++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~-----~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv 72 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF-----G--DDYVVVDLGRSLDE--VSLAALDQADRVFLVT 72 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----C--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEe
Confidence 34444 68999999876654321111011111 111110 1 16899999987532 2334677889999988
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC-C-CCCEEEEeec
Q 032516 86 SLISKASYENVAKKWIPELRHYA-P-GVPIILVGTK 119 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~-~-~~~vivv~nK 119 (139)
+.+ ..+...+ ..+++.+++.. + ...+.+|.|+
T Consensus 73 ~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 73 QQD-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred cCC-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 754 5666666 66777766644 3 4567777775
No 404
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.39 E-value=0.00012 Score=54.31 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=71.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----------------eeeee-------EEEEE----------
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----------------FDNFS-------ANVVV---------- 49 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~---------- 49 (139)
.+..+.+...|+-+.|||||+-.+..++..+..-.+. ...+. +.+..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3567889999999999999997766543322111110 00110 00111
Q ss_pred ---CCeEEEEEEEeCCCcccccccc--cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 50 ---DGSTVNLGLWDTAGQEDYNRLR--PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 50 ---~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+..+--+.+.|+.|++.|-... -..=.+.|-.++++.+++.-+-..= +.+--.+. -+.|++++.||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~~a---~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIALA---MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhhhh---hcCCEEEEEEecccCc
Confidence 1122347899999999885422 2222567888888888776443331 22222222 3699999999999874
Q ss_pred cC
Q 032516 125 CD 126 (139)
Q Consensus 125 ~~ 126 (139)
.+
T Consensus 270 dd 271 (527)
T COG5258 270 DD 271 (527)
T ss_pred HH
Confidence 44
No 405
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=9.1e-05 Score=52.19 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=53.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE--EEEECCeEEEEEEEeCCCcccccccccccccC----cc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA--NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----AD 79 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~ 79 (139)
-.-|++.|..+ ||+++++++...-. ...++...+|++ .+..++.+-..++|+.+|......+..--++. .-
T Consensus 45 E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~ 121 (363)
T KOG3929|consen 45 EFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF 121 (363)
T ss_pred eeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence 34567777554 59999998886643 334555555544 33333333447899999987655443333321 23
Q ss_pred EEEEEEeCCCHHHHH
Q 032516 80 VFILAFSLISKASYE 94 (139)
Q Consensus 80 ~~i~v~d~~~~~s~~ 94 (139)
.+|++.|+++++.+.
T Consensus 122 slIL~LDls~p~~~W 136 (363)
T KOG3929|consen 122 SLILVLDLSKPNDLW 136 (363)
T ss_pred hheeeeecCChHHHH
Confidence 688899999997654
No 406
>PRK03839 putative kinase; Provisional
Probab=97.38 E-value=0.00019 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.||+||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988765
No 407
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.37 E-value=0.0002 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988875
No 408
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0006 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=18.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
--++++|+.|+||||.+.++..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 3589999999999999987764
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.37 E-value=0.00045 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.046 Sum_probs=18.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISY 26 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~ 26 (139)
++.-++++|.+|+||||.+-.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3567999999999999996544
No 410
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.37 E-value=0.00021 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
||++-|.+|+||||++++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.37 E-value=0.00034 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=19.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
++..|+++|.+|+||||.+..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999997664
No 412
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.36 E-value=0.0075 Score=45.62 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=66.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC-----------------CCCCC----CCCceeeee----eEEEEE-CCeEEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN-----------------TFPTD----YVPTVFDNF----SANVVV-DGSTVNLGLWD 60 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~-----------------~~~~~----~~~~~~~~~----~~~~~~-~~~~~~~~i~D 60 (139)
+=|-++|+-.+|||||++||..- ..++. ..-|++.-| ...+.. ++...++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 55789999999999999999752 11111 011111112 223444 46778999999
Q ss_pred CCCcc--------c---ccccc------------------cccccCc--cEEEEEEeCC----CHHHHHHHHHHHHHHHh
Q 032516 61 TAGQE--------D---YNRLR------------------PLSYRGA--DVFILAFSLI----SKASYENVAKKWIPELR 105 (139)
Q Consensus 61 ~~g~~--------~---~~~~~------------------~~~~~~~--~~~i~v~d~~----~~~s~~~~~~~~~~~l~ 105 (139)
|-|-- + -|... +.-+++. =|+++.-|-+ .++...++.+...++|+
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 98721 0 00000 0012222 2455554543 23566666688889998
Q ss_pred hhCCCCCEEEEeecCC
Q 032516 106 HYAPGVPIILVGTKLG 121 (139)
Q Consensus 106 ~~~~~~~vivv~nK~D 121 (139)
.. +.|++++.|-.+
T Consensus 178 ~i--gKPFvillNs~~ 191 (492)
T PF09547_consen 178 EI--GKPFVILLNSTK 191 (492)
T ss_pred Hh--CCCEEEEEeCCC
Confidence 85 689999888776
No 413
>PRK14530 adenylate kinase; Provisional
Probab=97.36 E-value=0.0002 Score=49.25 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+|+++|+|||||||+.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988753
No 414
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.35 E-value=0.00024 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
++++.++|++|+||||++++++..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988753
No 415
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.35 E-value=0.00018 Score=44.88 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
|++.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999877653
No 416
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.34 E-value=0.00023 Score=48.68 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
......|.++|..|+|||||+++++..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999999998764
No 417
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00026 Score=52.54 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=34.4
Q ss_pred CeEEEEEEEeCCCcccccc-cccc-----cccCccEEEEEEeCCCHHHHHHHHHHHHHHH
Q 032516 51 GSTVNLGLWDTAGQEDYNR-LRPL-----SYRGADVFILAFSLISKASYENVAKKWIPEL 104 (139)
Q Consensus 51 ~~~~~~~i~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l 104 (139)
.+.+++.|.||+|...-.. +.+. -.-..|-+|+|.|++-.+..+...+.+.+.+
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 4457899999999543221 1111 1235789999999987776666545555543
No 418
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.00027 Score=44.15 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP 32 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~ 32 (139)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999875543
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.32 E-value=0.00046 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=18.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.+.-|+++|.+|+||||.+-.+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35679999999999999665443
No 420
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.32 E-value=0.00012 Score=54.50 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=50.1
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccc--cccccccCcc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNR--LRPLSYRGAD 79 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~~ 79 (139)
....+.+-|+|.||+||||++|.+-..+.-.. .|..+..-. ..++. .-.+.++||||.-.-.+ .....+ .
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---h
Confidence 35678999999999999999999988664322 222222211 01111 12378999999653322 222222 3
Q ss_pred EEEEEEeCCCHHH
Q 032516 80 VFILAFSLISKAS 92 (139)
Q Consensus 80 ~~i~v~d~~~~~s 92 (139)
++|-|=++.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 5677778887753
No 421
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.31 E-value=0.00036 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
+..+++++|++|.|||+++++|....
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 44679999999999999999999854
No 422
>PRK14532 adenylate kinase; Provisional
Probab=97.31 E-value=0.00025 Score=47.63 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988864
No 423
>PRK14527 adenylate kinase; Provisional
Probab=97.30 E-value=0.00033 Score=47.30 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=23.1
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
|..++..-|+++|+||+||||+.+++..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455667799999999999999988763
No 424
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00025 Score=48.76 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|||||||+..+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999977654
No 425
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.30 E-value=0.00027 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
+.+++++++|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999888764
No 426
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.29 E-value=0.00036 Score=47.09 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.=|+++|++|||||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999874
No 427
>PRK06547 hypothetical protein; Provisional
Probab=97.29 E-value=0.00034 Score=46.68 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.4
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..+...|++.|.+||||||+.+.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677889999999999999998865
No 428
>PRK14531 adenylate kinase; Provisional
Probab=97.28 E-value=0.0003 Score=47.24 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+.+|+++|+|||||||+.+++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988754
No 429
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.28 E-value=0.00024 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
++++|++|||||||++-+-.-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999887653
No 430
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.28 E-value=0.00027 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987653
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.28 E-value=0.00029 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
|+++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998864
No 432
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.28 E-value=0.00024 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.|.++|+.|+|||||+.++++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988764
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.26 E-value=0.0004 Score=38.37 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
..++.|+.|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999987764
No 434
>PRK13949 shikimate kinase; Provisional
Probab=97.23 E-value=0.00037 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987664
No 435
>PRK08233 hypothetical protein; Provisional
Probab=97.23 E-value=0.00042 Score=46.07 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-|.+.|.+||||||+.+++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688899999999999998875
No 436
>PLN02200 adenylate kinase family protein
Probab=97.23 E-value=0.00046 Score=48.27 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+..|+++|.|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999988764
No 437
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.22 E-value=0.00032 Score=46.87 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.9
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 032516 7 IKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~ 27 (139)
..|+++|.+||||||+++++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998887
No 438
>PRK12288 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.00078 Score=49.79 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=38.0
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.++|.+++|++...+.++..+ +.|+..... .++|.++|+||+|+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCC
Confidence 568999999999888899888 777765543 5799999999999964
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.21 E-value=0.00039 Score=46.79 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|++|+||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999988653
No 440
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.20 E-value=0.00036 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.|+++|++|+||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999998873
No 441
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.20 E-value=0.00036 Score=44.51 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998775
No 442
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00027 Score=45.88 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....||++.|-||+||||+.+++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999999874
No 443
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.19 E-value=0.00038 Score=46.46 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999988764
No 444
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.19 E-value=0.00035 Score=46.98 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
+|+++|.|||||||+.+++...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887653
No 445
>PHA00729 NTP-binding motif containing protein
Probab=97.18 E-value=0.00047 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+|++.|.||+|||+|+.++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988764
No 446
>PRK01889 GTPase RsgA; Reviewed
Probab=97.17 E-value=0.00051 Score=50.93 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
-+++++|.+|+|||||++.+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 368999999999999999998643
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.0015 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
|++.|++|+||||+++.++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987764
No 448
>PRK00625 shikimate kinase; Provisional
Probab=97.16 E-value=0.00043 Score=46.21 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 449
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.16 E-value=0.00038 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
||+++|+|||||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 450
>PRK02496 adk adenylate kinase; Provisional
Probab=97.14 E-value=0.00054 Score=45.89 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+++++|+||+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987764
No 451
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.13 E-value=0.00041 Score=43.58 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999874
No 452
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.13 E-value=0.00048 Score=46.68 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|.+.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999988865
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.12 E-value=0.00045 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|+.|+|||||++.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999876654
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00048 Score=48.22 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
++++|++|+|||||++-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999977765
No 455
>PLN02674 adenylate kinase
Probab=97.11 E-value=0.0006 Score=47.97 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....+|+++|+||+||+|...++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988765
No 456
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.00096 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.++++|+.|+||||++.++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987753
No 457
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00041 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.=+++.|++|+||||+++.++...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999865
No 458
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.09 E-value=0.003 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+|++.|+.|+|||||++.++..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3578999999999999999999864
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.08 E-value=0.00057 Score=41.98 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 032516 7 IKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~ 27 (139)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999998876
No 460
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.07 E-value=0.00049 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=16.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-.+++.|++|+|||++++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998764
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.0006 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--|+++|++|+|||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999888764
No 462
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.05 E-value=0.00064 Score=43.91 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+++.|.+|+||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 688999999999999887664
No 463
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.04 E-value=0.00052 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|+++|++|+||||+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57899999999999988765
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0012 Score=49.71 Aligned_cols=62 Identities=21% Similarity=0.115 Sum_probs=37.7
Q ss_pred EEEEEEeCCCcccccccccc------cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 032516 54 VNLGLWDTAGQEDYNRLRPL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLG 121 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D 121 (139)
+++.|+||+|........-. ..-+.|-+++|.|+.-.+......+.+.+.+.- .-+|.||.|
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEccc
Confidence 57999999996543321111 123568899999997776665554666555421 234556666
No 465
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.03 E-value=0.00063 Score=47.14 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|.+.|++|||||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999988764
No 466
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.01 E-value=0.00077 Score=46.38 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+|+++|+|||||||+.+++..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987764
No 467
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.01 E-value=0.00088 Score=44.60 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..+|+++|++|+||||+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 44799999999999999988875
No 468
>PRK06762 hypothetical protein; Provisional
Probab=97.00 E-value=0.00078 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-|++.|.+||||||+.+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999887653
No 469
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.99 E-value=0.0099 Score=42.91 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHH
Q 032516 6 FIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.-.|++.|.+|+||||+++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 3468999999999999999884
No 470
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.99 E-value=0.0037 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+|++.|.+|+|||||++.++..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999998764
No 471
>PRK13695 putative NTPase; Provisional
Probab=96.99 E-value=0.00086 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++.|.+|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 472
>PF13479 AAA_24: AAA domain
Probab=96.98 E-value=0.00069 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISY 26 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~ 26 (139)
+.+|+++.|++|+||||++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5789999999999999999887
No 473
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.98 E-value=0.0033 Score=40.18 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999988875
No 474
>PRK14528 adenylate kinase; Provisional
Probab=96.98 E-value=0.00089 Score=45.12 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+|+++|+||+||||+.+++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988763
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.98 E-value=0.00089 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-.++++|++|+||||+++.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356999999999999999888764
No 476
>PF05729 NACHT: NACHT domain
Probab=96.97 E-value=0.00078 Score=43.75 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+++.|.+|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999988864
No 477
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.97 E-value=0.00069 Score=45.89 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|.|.|++|||||||.+++..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998754
No 478
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.97 E-value=0.0011 Score=44.16 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...-|++.|.+|+||||+.+.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999987754
No 479
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00079 Score=44.70 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 032516 7 IKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~ 27 (139)
.+|++.|-||+||||+.+++-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999998887
No 480
>PRK08356 hypothetical protein; Provisional
Probab=96.96 E-value=0.0011 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|+++|+|||||||+.+++..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998854
No 481
>PRK14529 adenylate kinase; Provisional
Probab=96.95 E-value=0.00092 Score=46.43 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
++|+++|+|||||||..+++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987654
No 482
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0012 Score=45.78 Aligned_cols=26 Identities=23% Similarity=0.205 Sum_probs=22.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..+++-|.|.|.+|||||||.+.+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999999988764
No 483
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.94 E-value=0.0021 Score=43.77 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=39.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
-.+++.|.+|+|||+++..++..-.... ....+.+.+.|..|. .+...... ..... +..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~---------------~p~~~~l~iiD~k~~-~l~~~~~~--~~~~~---~~~ 97 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTY---------------SPDDVQLYIIDPKGS-DLAPLADL--PHVAA---VAV 97 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT-----------------TTTEEEEEE-TTSS-CCGGGTT---TTBSS----S-
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHh---------------cCCccEEEEEcCCcc-ccchhhhh--hhhcc---ccc
Confidence 3799999999999999998876432110 123356888997765 33332111 11111 233
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 032516 87 LISKASYENVAKKWIPELR 105 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~ 105 (139)
.++.+....+.+.+..+++
T Consensus 98 ~~~~~~~~~~l~~l~~em~ 116 (205)
T PF01580_consen 98 ATDPEEILRLLEELVEEME 116 (205)
T ss_dssp B-SHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 4566666555455555553
No 484
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.94 E-value=0.00093 Score=44.47 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-|++.|.+|+||||+.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999988764
No 485
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.93 E-value=0.00097 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|.+|+|||||++++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 486
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.92 E-value=0.0013 Score=45.79 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++.-+.+.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987764
No 487
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.92 E-value=0.0012 Score=43.52 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|+++|.+|+||||+...+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999887754
No 488
>PRK13947 shikimate kinase; Provisional
Probab=96.92 E-value=0.0011 Score=43.82 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988764
No 489
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.91 E-value=0.0035 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHhCC
Q 032516 9 CVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~~ 30 (139)
-++-|.-|+|||||++.++.+.
T Consensus 60 tIITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 60 TIITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred EEEEecccCChHHHHHHHHccC
Confidence 4677999999999999998753
No 490
>PTZ00301 uridine kinase; Provisional
Probab=96.90 E-value=0.00098 Score=45.89 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=18.2
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 032516 7 IKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~ 27 (139)
+=|.+.|.+|||||||.+++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 558899999999999998664
No 491
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.90 E-value=0.00083 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...-+-++|.+|+|||||+++++..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988764
No 492
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.89 E-value=0.0033 Score=39.65 Aligned_cols=23 Identities=22% Similarity=0.201 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--|++-|+-|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999988863
No 493
>PF13173 AAA_14: AAA domain
Probab=96.89 E-value=0.001 Score=41.99 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~ 31 (139)
-+++.|+.+|||||++.++...-.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999987654
No 494
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.88 E-value=0.0036 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..+|++.|.+|+||||+++.++..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
No 495
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.88 E-value=0.001 Score=50.02 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..+|+|+|.+|+|||||++.+...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.87 E-value=0.0012 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.+.++|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999988753
No 497
>PRK14526 adenylate kinase; Provisional
Probab=96.86 E-value=0.0012 Score=45.42 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+++++|+||+||||+.+.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987763
No 498
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.86 E-value=0.00098 Score=43.07 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.+|+||||+.+.+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999988764
No 499
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.85 E-value=0.0012 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-+|+++|.+|+|||||++.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998876
No 500
>PRK04040 adenylate kinase; Provisional
Probab=96.85 E-value=0.0013 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|++.|.||+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999998754
Done!