Query 032516
Match_columns 139
No_of_seqs 121 out of 1137
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.9E-33 6.7E-38 192.4 13.3 123 3-126 10-134 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 3.3E-30 1.1E-34 175.0 15.3 125 1-125 4-128 (212)
3 3reg_A RHO-like small GTPase; 100.0 9.9E-30 3.4E-34 170.5 17.1 122 3-124 20-141 (194)
4 3t5g_A GTP-binding protein RHE 100.0 1.7E-29 5.9E-34 167.3 17.4 124 1-125 1-126 (181)
5 1m7b_A RND3/RHOE small GTP-bin 100.0 1.1E-29 3.8E-34 169.1 15.8 122 3-124 4-125 (184)
6 2atx_A Small GTP binding prote 100.0 1.4E-29 5E-34 169.6 16.2 123 3-125 15-137 (194)
7 3q3j_B RHO-related GTP-binding 100.0 1.1E-29 3.7E-34 173.3 15.3 121 4-124 25-145 (214)
8 3c5c_A RAS-like protein 12; GD 100.0 2.9E-29 9.9E-34 167.7 16.0 121 3-125 18-142 (187)
9 3bwd_D RAC-like GTP-binding pr 100.0 2E-30 6.7E-35 171.8 9.7 125 1-125 3-127 (182)
10 2q3h_A RAS homolog gene family 100.0 3.6E-29 1.2E-33 168.5 15.9 122 3-124 17-138 (201)
11 1gwn_A RHO-related GTP-binding 100.0 3.5E-29 1.2E-33 169.8 15.6 121 4-124 26-146 (205)
12 1mh1_A RAC1; GTP-binding, GTPa 100.0 6.3E-29 2.2E-33 164.9 16.2 122 4-125 3-124 (186)
13 2gco_A H9, RHO-related GTP-bin 100.0 1.4E-28 4.9E-33 165.9 16.6 122 4-125 23-144 (201)
14 3tw8_B RAS-related protein RAB 100.0 1.9E-28 6.4E-33 161.8 16.7 123 3-126 6-129 (181)
15 3oes_A GTPase rhebl1; small GT 100.0 8.2E-29 2.8E-33 167.0 15.1 125 1-126 19-145 (201)
16 2j1l_A RHO-related GTP-binding 100.0 7.3E-29 2.5E-33 169.0 14.8 122 4-125 32-153 (214)
17 2iwr_A Centaurin gamma 1; ANK 100.0 7.8E-29 2.7E-33 163.7 14.3 116 1-123 2-121 (178)
18 4gzl_A RAS-related C3 botulinu 100.0 6.9E-29 2.4E-33 168.0 14.0 123 4-126 28-150 (204)
19 2fv8_A H6, RHO-related GTP-bin 100.0 1.9E-28 6.4E-33 166.0 16.0 122 4-125 23-144 (207)
20 1r2q_A RAS-related protein RAB 100.0 3.1E-28 1.1E-32 159.2 15.8 122 3-125 3-126 (170)
21 1z2a_A RAS-related protein RAB 100.0 2.5E-28 8.7E-33 159.4 15.3 122 3-125 2-124 (168)
22 1c1y_A RAS-related protein RAP 100.0 1.5E-28 5.2E-33 160.3 14.1 121 5-126 2-124 (167)
23 3kkq_A RAS-related protein M-R 100.0 2.1E-28 7.2E-33 162.3 15.0 120 4-124 16-137 (183)
24 1z08_A RAS-related protein RAB 100.0 2.9E-28 1E-32 159.5 15.0 122 3-125 3-126 (170)
25 1z0j_A RAB-22, RAS-related pro 100.0 6.4E-28 2.2E-32 157.8 16.6 123 3-126 3-127 (170)
26 2hup_A RAS-related protein RAB 100.0 1.4E-28 4.8E-33 166.1 13.8 121 4-125 27-149 (201)
27 2efe_B Small GTP-binding prote 100.0 7.1E-28 2.4E-32 159.3 16.9 122 4-126 10-133 (181)
28 2ew1_A RAS-related protein RAB 100.0 3.4E-28 1.2E-32 164.5 15.6 121 4-125 24-146 (201)
29 1u8z_A RAS-related protein RAL 100.0 2.4E-28 8.4E-33 159.2 14.2 121 5-126 3-125 (168)
30 2gf9_A RAS-related protein RAB 100.0 1.1E-27 3.8E-32 159.9 17.6 122 4-126 20-143 (189)
31 2bcg_Y Protein YP2, GTP-bindin 100.0 7.8E-28 2.7E-32 162.6 17.1 122 3-125 5-128 (206)
32 3ihw_A Centg3; RAS, centaurin, 100.0 4E-28 1.4E-32 161.9 15.4 114 3-123 17-132 (184)
33 2a5j_A RAS-related protein RAB 100.0 4.6E-28 1.6E-32 162.1 15.6 121 4-125 19-141 (191)
34 2fu5_C RAS-related protein RAB 100.0 1.3E-28 4.6E-33 163.3 12.8 121 4-125 6-128 (183)
35 2fn4_A P23, RAS-related protei 100.0 3.9E-28 1.3E-32 160.3 14.9 123 3-126 6-130 (181)
36 4dsu_A GTPase KRAS, isoform 2B 100.0 5.6E-28 1.9E-32 160.6 15.7 120 4-124 2-123 (189)
37 1ek0_A Protein (GTP-binding pr 100.0 7.1E-28 2.4E-32 157.4 16.0 120 5-125 2-123 (170)
38 1z06_A RAS-related protein RAB 100.0 5.8E-28 2E-32 161.2 15.3 122 4-126 18-143 (189)
39 2bov_A RAla, RAS-related prote 100.0 6.2E-28 2.1E-32 162.6 15.5 122 4-126 12-135 (206)
40 1kao_A RAP2A; GTP-binding prot 100.0 6.3E-28 2.2E-32 157.1 15.0 121 5-126 2-124 (167)
41 3cpj_B GTP-binding protein YPT 100.0 7.6E-28 2.6E-32 164.8 16.0 122 3-125 10-133 (223)
42 3tkl_A RAS-related protein RAB 100.0 8.7E-28 3E-32 160.8 15.9 122 4-126 14-137 (196)
43 1z0f_A RAB14, member RAS oncog 100.0 8E-28 2.7E-32 158.5 15.4 122 3-125 12-135 (179)
44 2atv_A RERG, RAS-like estrogen 100.0 3.5E-28 1.2E-32 163.2 13.8 123 1-125 23-147 (196)
45 2a9k_A RAS-related protein RAL 100.0 4.9E-28 1.7E-32 160.5 14.3 122 4-126 16-139 (187)
46 2bme_A RAB4A, RAS-related prot 100.0 8.9E-28 3E-32 159.5 15.4 121 4-125 8-130 (186)
47 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-27 4.9E-32 160.9 16.1 122 4-126 6-129 (203)
48 2erx_A GTP-binding protein DI- 100.0 4.5E-28 1.5E-32 158.7 13.1 121 5-126 2-125 (172)
49 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-27 4.6E-32 157.4 15.3 119 4-123 5-129 (177)
50 2fg5_A RAB-22B, RAS-related pr 100.0 1.2E-27 4.1E-32 160.3 15.2 120 4-124 21-142 (192)
51 2oil_A CATX-8, RAS-related pro 100.0 1.5E-27 5.3E-32 159.6 15.6 123 3-126 22-146 (193)
52 2y8e_A RAB-protein 6, GH09086P 100.0 8.8E-28 3E-32 158.3 14.2 122 4-126 12-135 (179)
53 2g6b_A RAS-related protein RAB 100.0 3.5E-27 1.2E-31 155.8 16.7 122 3-125 7-131 (180)
54 1g16_A RAS-related protein SEC 100.0 8.8E-28 3E-32 157.1 13.6 118 5-123 2-121 (170)
55 2p5s_A RAS and EF-hand domain 100.0 4.9E-28 1.7E-32 163.0 12.5 120 3-123 25-146 (199)
56 1ky3_A GTP-binding protein YPT 100.0 8.5E-28 2.9E-32 158.8 13.4 121 3-124 5-132 (182)
57 2nzj_A GTP-binding protein REM 100.0 1.9E-27 6.5E-32 156.3 14.8 122 4-126 2-127 (175)
58 2il1_A RAB12; G-protein, GDP, 100.0 5.1E-28 1.7E-32 162.2 12.2 122 4-126 24-147 (192)
59 3con_A GTPase NRAS; structural 100.0 3.5E-27 1.2E-31 157.4 16.3 120 4-124 19-140 (190)
60 3q72_A GTP-binding protein RAD 100.0 1.5E-27 5.2E-32 155.7 14.1 119 6-126 2-122 (166)
61 2o52_A RAS-related protein RAB 100.0 8.7E-28 3E-32 162.1 13.1 122 4-126 23-146 (200)
62 3clv_A RAB5 protein, putative; 100.0 2.4E-27 8.3E-32 159.0 15.2 120 1-122 2-159 (208)
63 2hxs_A RAB-26, RAS-related pro 100.0 3.9E-28 1.3E-32 160.1 11.1 122 3-125 3-130 (178)
64 1x3s_A RAS-related protein RAB 100.0 2.4E-27 8.2E-32 158.4 14.7 119 4-123 13-134 (195)
65 3bc1_A RAS-related protein RAB 100.0 3.4E-27 1.2E-31 157.2 15.4 121 4-125 9-142 (195)
66 1vg8_A RAS-related protein RAB 100.0 3E-27 1E-31 159.5 14.6 119 4-123 6-130 (207)
67 3q85_A GTP-binding protein REM 100.0 2.5E-27 8.4E-32 155.1 13.7 120 6-126 2-125 (169)
68 3gj0_A GTP-binding nuclear pro 100.0 5.9E-28 2E-32 165.0 10.9 121 4-125 13-134 (221)
69 2yc2_C IFT27, small RAB-relate 100.0 5.2E-28 1.8E-32 163.1 10.3 121 3-124 17-146 (208)
70 2ce2_X GTPase HRAS; signaling 100.0 4.1E-27 1.4E-31 153.0 14.0 119 5-124 2-122 (166)
71 3dz8_A RAS-related protein RAB 99.9 2.6E-28 8.7E-33 163.3 7.8 122 4-126 21-144 (191)
72 3cph_A RAS-related protein SEC 99.9 8.8E-27 3E-31 157.8 15.4 119 4-123 18-138 (213)
73 3cbq_A GTP-binding protein REM 99.9 2.2E-27 7.6E-32 159.7 11.5 121 4-125 21-145 (195)
74 2gf0_A GTP-binding protein DI- 99.9 2.9E-27 9.9E-32 158.6 11.9 121 3-124 5-128 (199)
75 2g3y_A GTP-binding protein GEM 99.9 1.3E-26 4.5E-31 158.0 15.0 121 4-125 35-160 (211)
76 2f7s_A C25KG, RAS-related prot 99.9 1.8E-27 6.2E-32 161.9 10.7 122 3-125 22-156 (217)
77 4bas_A ADP-ribosylation factor 99.9 4.5E-27 1.6E-31 157.6 12.5 119 3-125 14-142 (199)
78 3t1o_A Gliding protein MGLA; G 99.9 1.9E-27 6.5E-32 159.0 9.8 121 3-125 11-150 (198)
79 1zd9_A ADP-ribosylation factor 99.9 6.5E-27 2.2E-31 156.2 12.3 118 4-125 20-139 (188)
80 3l0i_B RAS-related protein RAB 99.9 5E-28 1.7E-32 162.9 6.4 122 4-126 31-154 (199)
81 2wkq_A NPH1-1, RAS-related C3 99.9 3.5E-26 1.2E-30 164.2 15.4 121 5-125 154-274 (332)
82 1m2o_B GTP-binding protein SAR 99.9 8.1E-26 2.8E-30 151.3 15.6 116 4-124 21-138 (190)
83 3th5_A RAS-related C3 botulinu 99.9 6.6E-29 2.2E-33 167.8 0.0 122 4-125 28-149 (204)
84 1f6b_A SAR1; gtpases, N-termin 99.9 2.6E-26 8.8E-31 154.7 12.7 116 4-124 23-140 (198)
85 1r8s_A ADP-ribosylation factor 99.9 1.7E-26 5.8E-31 150.4 11.3 114 7-125 1-116 (164)
86 1ksh_A ARF-like protein 2; sma 99.9 6.9E-26 2.4E-30 150.6 14.3 117 4-125 16-134 (186)
87 1zj6_A ADP-ribosylation factor 99.9 2.5E-26 8.6E-31 153.1 12.1 116 4-124 14-131 (187)
88 2h57_A ADP-ribosylation factor 99.9 5.1E-26 1.7E-30 151.9 13.5 118 4-125 19-141 (190)
89 2cjw_A GTP-binding protein GEM 99.9 1.3E-25 4.5E-30 150.7 15.1 120 4-124 4-128 (192)
90 2h17_A ADP-ribosylation factor 99.9 3.7E-26 1.3E-30 151.6 12.0 116 4-124 19-136 (181)
91 1upt_A ARL1, ADP-ribosylation 99.9 1.7E-25 5.9E-30 146.4 14.6 117 4-125 5-123 (171)
92 2zej_A Dardarin, leucine-rich 99.9 4.9E-27 1.7E-31 156.4 7.3 119 6-125 2-127 (184)
93 4djt_A GTP-binding nuclear pro 99.9 2.2E-26 7.5E-31 156.7 10.3 121 4-125 9-132 (218)
94 1fzq_A ADP-ribosylation factor 99.9 3.5E-26 1.2E-30 152.0 10.8 118 4-126 14-133 (181)
95 2b6h_A ADP-ribosylation factor 99.9 2.7E-26 9.3E-31 153.9 9.6 118 3-125 26-145 (192)
96 3llu_A RAS-related GTP-binding 99.9 6.6E-26 2.3E-30 152.3 10.6 120 3-124 17-143 (196)
97 2fh5_B SR-beta, signal recogni 99.9 1.5E-25 5E-30 152.2 12.1 122 3-126 4-131 (214)
98 1moz_A ARL1, ADP-ribosylation 99.9 8.5E-26 2.9E-30 149.6 10.3 117 4-125 16-134 (183)
99 2x77_A ADP-ribosylation factor 99.9 1.3E-25 4.5E-30 149.7 11.1 117 4-125 20-138 (189)
100 3r7w_A Gtpase1, GTP-binding pr 99.9 4.1E-25 1.4E-29 158.1 11.8 117 5-124 2-129 (307)
101 2f9l_A RAB11B, member RAS onco 99.9 4.5E-24 1.5E-28 143.6 15.9 121 4-125 3-125 (199)
102 1oix_A RAS-related protein RAB 99.9 1.4E-23 4.8E-28 140.6 15.5 121 4-125 27-149 (191)
103 3r7w_B Gtpase2, GTP-binding pr 99.9 4.2E-25 1.4E-29 158.4 8.5 112 8-124 1-120 (331)
104 3o47_A ADP-ribosylation factor 99.9 7.2E-25 2.5E-29 158.2 7.8 118 5-126 164-282 (329)
105 2lkc_A Translation initiation 99.9 1.5E-23 5.3E-28 138.0 13.0 113 4-125 6-122 (178)
106 3lvq_E ARF-GAP with SH3 domain 99.9 4.2E-23 1.4E-27 156.0 14.2 117 4-125 320-438 (497)
107 2ged_A SR-beta, signal recogni 99.9 6.5E-24 2.2E-28 141.8 8.1 115 4-127 46-173 (193)
108 3c5h_A Glucocorticoid receptor 99.9 2.7E-24 9.1E-29 150.3 6.1 120 4-124 17-212 (255)
109 1nrj_B SR-beta, signal recogni 99.9 8E-24 2.7E-28 144.0 8.0 115 4-127 10-137 (218)
110 3dpu_A RAB family protein; roc 99.9 3.7E-23 1.3E-27 157.6 9.4 122 2-127 37-167 (535)
111 2wji_A Ferrous iron transport 99.9 4.1E-22 1.4E-26 130.4 12.3 113 5-125 2-123 (165)
112 2dyk_A GTP-binding protein; GT 99.9 6.3E-22 2.1E-26 128.2 11.5 114 7-126 2-124 (161)
113 1svi_A GTP-binding protein YSX 99.9 9.2E-23 3.1E-27 136.3 7.6 118 2-126 19-150 (195)
114 2gj8_A MNME, tRNA modification 99.9 3.8E-22 1.3E-26 131.6 9.8 117 4-124 2-129 (172)
115 2qu8_A Putative nucleolar GTP- 99.9 4.8E-22 1.7E-26 136.4 10.0 120 4-126 27-158 (228)
116 1wf3_A GTP-binding protein; GT 99.9 8.8E-22 3E-26 140.5 11.5 119 5-126 6-133 (301)
117 2wjg_A FEOB, ferrous iron tran 99.9 1.4E-21 4.9E-26 129.7 9.3 116 3-126 4-128 (188)
118 2cxx_A Probable GTP-binding pr 99.9 2.1E-22 7E-27 133.9 4.4 114 7-125 2-137 (190)
119 3iev_A GTP-binding protein ERA 99.9 2.8E-21 9.5E-26 138.4 10.5 118 2-123 6-135 (308)
120 3def_A T7I23.11 protein; chlor 99.8 3.4E-21 1.2E-25 135.0 8.4 120 4-126 34-167 (262)
121 3pqc_A Probable GTP-binding pr 99.8 8.9E-21 3.1E-25 126.3 8.8 116 3-126 20-149 (195)
122 3a1s_A Iron(II) transport prot 99.8 2.6E-20 9E-25 130.3 11.3 116 3-126 2-126 (258)
123 3gee_A MNME, tRNA modification 99.8 2.3E-20 7.8E-25 140.4 9.6 119 5-127 232-360 (476)
124 4dhe_A Probable GTP-binding pr 99.8 4.9E-21 1.7E-25 130.5 5.4 120 3-126 26-160 (223)
125 3iby_A Ferrous iron transport 99.8 1.7E-20 5.9E-25 131.1 7.9 112 7-126 2-126 (256)
126 3i8s_A Ferrous iron transport 99.8 3.6E-20 1.2E-24 130.6 9.0 114 5-126 2-128 (274)
127 3b1v_A Ferrous iron uptake tra 99.8 2.9E-20 9.9E-25 131.0 8.3 113 5-125 2-122 (272)
128 1h65_A Chloroplast outer envel 99.8 3.4E-20 1.2E-24 130.3 8.3 119 5-126 38-170 (270)
129 2hjg_A GTP-binding protein ENG 99.8 1.8E-20 6.3E-25 139.7 6.4 117 5-127 174-303 (436)
130 3lxx_A GTPase IMAP family memb 99.8 1E-19 3.5E-24 125.7 8.9 119 4-126 27-161 (239)
131 2ywe_A GTP-binding protein LEP 99.8 1.2E-19 4E-24 139.5 9.8 123 1-127 1-142 (600)
132 1mky_A Probable GTP-binding pr 99.8 2.2E-19 7.4E-24 134.0 10.6 112 7-124 2-124 (439)
133 2xtp_A GTPase IMAP family memb 99.8 5.1E-19 1.8E-23 123.5 11.6 115 5-124 21-153 (260)
134 2hjg_A GTP-binding protein ENG 99.8 3E-20 1E-24 138.6 5.3 115 6-125 3-126 (436)
135 3k53_A Ferrous iron transport 99.8 3.6E-19 1.2E-23 125.2 10.1 113 5-124 2-123 (271)
136 3lxw_A GTPase IMAP family memb 99.8 4E-19 1.4E-23 123.5 10.1 116 4-124 19-153 (247)
137 4fid_A G protein alpha subunit 99.8 3.4E-19 1.2E-23 128.6 8.8 72 52-124 159-242 (340)
138 3qq5_A Small GTP-binding prote 99.8 1.1E-19 3.8E-24 134.8 6.4 117 4-127 32-157 (423)
139 3izy_P Translation initiation 99.8 9.1E-21 3.1E-25 144.0 0.4 118 4-126 2-120 (537)
140 3cb4_D GTP-binding protein LEP 99.8 2.2E-19 7.4E-24 138.1 7.5 119 4-126 2-139 (599)
141 4dcu_A GTP-binding protein ENG 99.8 3.8E-19 1.3E-23 133.3 7.3 117 4-126 193-322 (456)
142 3ohm_A Guanine nucleotide-bind 99.8 2.6E-18 9E-23 123.5 10.8 71 53-124 166-248 (327)
143 2xtz_A Guanine nucleotide-bind 99.8 4.5E-19 1.5E-23 128.9 6.8 72 52-124 181-264 (354)
144 4dcu_A GTP-binding protein ENG 99.8 1.5E-19 5.2E-24 135.4 4.5 117 5-126 22-147 (456)
145 1ega_A Protein (GTP-binding pr 99.8 2.6E-18 9E-23 122.6 10.4 114 4-124 6-130 (301)
146 3tr5_A RF-3, peptide chain rel 99.8 2.2E-19 7.5E-24 136.5 4.4 119 4-126 11-150 (528)
147 3p26_A Elongation factor 1 alp 99.8 1.5E-18 5E-23 130.9 8.7 120 4-124 31-185 (483)
148 1lnz_A SPO0B-associated GTP-bi 99.8 3.9E-19 1.3E-23 128.8 5.4 117 7-125 159-289 (342)
149 3sjy_A Translation initiation 99.8 6.1E-18 2.1E-22 125.0 11.6 122 3-126 5-145 (403)
150 1xzp_A Probable tRNA modificat 99.8 8.1E-19 2.8E-23 132.1 6.4 111 6-124 243-364 (482)
151 3geh_A MNME, tRNA modification 99.8 1.8E-18 6.1E-23 129.7 8.2 115 5-127 223-347 (462)
152 2e87_A Hypothetical protein PH 99.8 9.5E-18 3.2E-22 122.2 11.7 119 4-125 165-295 (357)
153 1cip_A Protein (guanine nucleo 99.8 1.3E-17 4.4E-22 121.3 11.8 70 53-123 192-273 (353)
154 1s0u_A EIF-2-gamma, translatio 99.7 3.1E-17 1.1E-21 121.4 13.8 119 2-126 4-151 (408)
155 1g7s_A Translation initiation 99.7 5.4E-18 1.8E-22 130.4 9.9 114 4-124 3-136 (594)
156 1jny_A EF-1-alpha, elongation 99.7 2.2E-19 7.7E-24 133.8 2.2 119 1-124 1-158 (435)
157 1zo1_I IF2, translation initia 99.7 5E-19 1.7E-23 133.5 3.8 114 4-126 2-119 (501)
158 3t5d_A Septin-7; GTP-binding p 99.7 3.1E-18 1.1E-22 120.6 7.3 117 4-124 6-158 (274)
159 2h5e_A Peptide chain release f 99.7 5.3E-18 1.8E-22 129.0 9.1 120 4-127 11-151 (529)
160 3j2k_7 ERF3, eukaryotic polype 99.7 2.1E-17 7.1E-22 123.3 11.3 117 4-124 15-169 (439)
161 2qtf_A Protein HFLX, GTP-bindi 99.7 3.3E-17 1.1E-21 119.6 12.0 115 7-125 179-307 (364)
162 2c78_A Elongation factor TU-A; 99.7 6E-18 2.1E-22 125.1 8.1 118 3-124 8-142 (405)
163 2qag_A Septin-2, protein NEDD5 99.7 2.2E-18 7.4E-23 125.8 5.3 118 5-125 36-189 (361)
164 1r5b_A Eukaryotic peptide chai 99.7 2.5E-18 8.7E-23 129.1 5.7 118 3-124 40-195 (467)
165 1n0u_A EF-2, elongation factor 99.7 1.2E-17 4E-22 132.9 9.8 118 3-124 16-164 (842)
166 2aka_B Dynamin-1; fusion prote 99.7 1.4E-17 4.9E-22 118.0 8.7 119 5-126 25-208 (299)
167 1mky_A Probable GTP-binding pr 99.7 2.5E-17 8.7E-22 122.8 10.3 116 5-126 179-308 (439)
168 1d2e_A Elongation factor TU (E 99.7 1.4E-17 4.6E-22 122.9 8.6 116 5-124 2-133 (397)
169 1f60_A Elongation factor EEF1A 99.7 2.5E-17 8.5E-22 123.5 9.5 116 3-124 4-159 (458)
170 1dar_A EF-G, elongation factor 99.7 1.6E-17 5.6E-22 129.8 8.8 116 4-126 10-145 (691)
171 1zun_B Sulfate adenylate trans 99.7 8.5E-17 2.9E-21 119.9 11.8 119 4-125 22-172 (434)
172 1kk1_A EIF2gamma; initiation o 99.7 1.1E-16 3.6E-21 118.6 12.1 118 3-126 7-153 (410)
173 2xex_A Elongation factor G; GT 99.7 2E-17 7E-22 129.3 8.6 118 3-126 7-143 (693)
174 1wb1_A Translation elongation 99.7 7.2E-17 2.5E-21 121.7 10.1 111 4-124 17-139 (482)
175 2rdo_7 EF-G, elongation factor 99.7 6.1E-17 2.1E-21 126.8 9.9 119 3-126 7-150 (704)
176 1jwy_B Dynamin A GTPase domain 99.7 2.7E-17 9.3E-22 117.5 6.6 121 5-127 23-215 (315)
177 2qpt_A EH domain-containing pr 99.7 1.6E-17 5.6E-22 126.8 5.4 117 5-126 64-234 (550)
178 3izq_1 HBS1P, elongation facto 99.7 2.1E-16 7.1E-21 122.1 11.5 117 4-124 165-319 (611)
179 3t34_A Dynamin-related protein 99.7 1.9E-16 6.5E-21 115.4 8.3 118 6-126 34-219 (360)
180 2j69_A Bacterial dynamin-like 99.7 2.6E-16 8.9E-21 123.1 9.5 118 5-125 68-245 (695)
181 3mca_A HBS1, elongation factor 99.6 2.7E-17 9.3E-22 126.6 2.1 118 4-124 175-329 (592)
182 1pui_A ENGB, probable GTP-bind 99.6 4.6E-16 1.6E-20 104.9 7.5 116 3-125 23-152 (210)
183 1wxq_A GTP-binding protein; st 99.6 1.6E-15 5.5E-20 111.8 11.0 84 7-90 1-114 (397)
184 2elf_A Protein translation elo 99.6 3.1E-16 1.1E-20 114.7 6.6 101 8-122 23-125 (370)
185 2dy1_A Elongation factor G; tr 99.6 8.4E-16 2.9E-20 119.8 9.4 116 4-123 7-139 (665)
186 3avx_A Elongation factor TS, e 99.6 4.1E-16 1.4E-20 126.2 7.5 117 4-124 294-426 (1289)
187 3vqt_A RF-3, peptide chain rel 99.6 1.1E-15 3.9E-20 116.7 8.8 120 4-127 29-169 (548)
188 1azs_C GS-alpha; complex (lyas 99.6 9.1E-15 3.1E-19 107.7 10.9 70 54-124 217-298 (402)
189 2x2e_A Dynamin-1; nitration, h 99.6 4E-15 1.4E-19 108.2 7.5 119 5-126 30-213 (353)
190 2qag_C Septin-7; cell cycle, c 99.6 1.8E-14 6.2E-19 106.7 9.8 116 6-124 31-181 (418)
191 4fn5_A EF-G 1, elongation fact 99.6 1.5E-14 5.1E-19 113.5 9.6 120 4-127 11-154 (709)
192 1u0l_A Probable GTPase ENGC; p 99.5 8.5E-16 2.9E-20 109.6 1.4 97 21-125 32-130 (301)
193 1zcb_A G alpha I/13; GTP-bindi 99.5 5.5E-14 1.9E-18 102.5 9.7 71 53-124 200-282 (362)
194 1jal_A YCHF protein; nucleotid 99.5 1.2E-13 4.1E-18 100.5 10.9 82 7-89 3-108 (363)
195 3j25_A Tetracycline resistance 99.5 4.4E-15 1.5E-19 115.3 -0.1 118 6-127 2-136 (638)
196 2qnr_A Septin-2, protein NEDD5 99.5 2.4E-14 8.1E-19 102.1 3.4 116 5-124 17-169 (301)
197 1udx_A The GTP-binding protein 99.4 5.5E-13 1.9E-17 98.8 9.4 115 8-125 159-284 (416)
198 4a9a_A Ribosome-interacting GT 99.4 2.4E-12 8.4E-17 94.1 9.8 114 5-123 71-195 (376)
199 2ohf_A Protein OLA1, GTP-bindi 99.3 9.7E-13 3.3E-17 96.7 5.4 88 5-92 21-131 (396)
200 3zvr_A Dynamin-1; hydrolase, D 99.2 6.6E-11 2.3E-15 93.1 11.1 118 5-126 50-233 (772)
201 2wsm_A Hydrogenase expression/ 99.2 1.8E-11 6E-16 83.0 5.5 109 5-124 29-168 (221)
202 2dby_A GTP-binding protein; GD 99.2 8.9E-11 3E-15 85.7 9.2 82 7-89 2-111 (368)
203 3p32_A Probable GTPase RV1496/ 99.2 8.9E-12 3.1E-16 90.6 3.0 60 54-124 172-231 (355)
204 2www_A Methylmalonic aciduria 99.1 9.9E-11 3.4E-15 85.0 6.6 60 54-124 167-226 (349)
205 2hf9_A Probable hydrogenase ni 99.1 4.9E-14 1.7E-18 96.0 -10.3 37 5-41 37-73 (226)
206 1yrb_A ATP(GTP)binding protein 99.1 1.5E-10 5.2E-15 80.3 6.6 69 54-125 109-186 (262)
207 2p67_A LAO/AO transport system 99.0 2.7E-11 9.3E-16 87.7 -0.1 60 54-124 149-208 (341)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.6E-09 1.2E-13 77.8 8.1 85 5-89 19-127 (392)
209 3ec1_A YQEH GTPase; atnos1, at 98.8 5.6E-10 1.9E-14 81.6 -0.1 112 7-126 163-290 (369)
210 3sop_A Neuronal-specific septi 98.7 1.3E-08 4.5E-13 71.4 5.4 116 6-125 2-155 (270)
211 3h2y_A GTPase family protein; 98.7 9.9E-10 3.4E-14 80.3 -0.4 113 7-126 161-289 (368)
212 2yv5_A YJEQ protein; hydrolase 98.7 1.1E-07 3.8E-12 67.6 9.8 59 64-125 66-125 (302)
213 2qag_B Septin-6, protein NEDD5 98.7 1.2E-07 4.2E-12 70.3 9.8 115 6-125 42-191 (427)
214 3l82_B F-box only protein 4; T 98.7 4.6E-09 1.6E-13 70.9 1.8 64 61-125 109-178 (227)
215 1puj_A YLQF, conserved hypothe 98.7 3.6E-08 1.2E-12 69.5 5.9 57 5-65 119-176 (282)
216 2qm8_A GTPase/ATPase; G protei 98.7 1.7E-08 5.8E-13 72.9 4.0 59 54-123 148-206 (337)
217 3cnl_A YLQF, putative uncharac 98.6 2.5E-08 8.6E-13 69.7 4.1 56 7-66 100-156 (262)
218 2j37_W Signal recognition part 98.5 8.5E-08 2.9E-12 72.6 5.2 113 4-123 99-253 (504)
219 3l2o_B F-box only protein 4; s 98.5 5E-08 1.7E-12 68.8 2.4 64 61-125 194-263 (312)
220 1f5n_A Interferon-induced guan 98.4 3.7E-07 1.3E-11 70.3 5.6 64 4-67 36-104 (592)
221 2v3c_C SRP54, signal recogniti 98.2 1.6E-06 5.5E-11 64.6 5.2 64 53-123 180-251 (432)
222 1tq4_A IIGP1, interferon-induc 98.2 4.6E-06 1.6E-10 61.8 6.9 110 6-123 69-188 (413)
223 1bif_A 6-phosphofructo-2-kinas 98.2 3.6E-08 1.2E-12 74.1 -4.5 99 4-107 37-148 (469)
224 3szr_A Interferon-induced GTP- 98.1 3.3E-06 1.1E-10 65.4 5.5 22 8-29 47-68 (608)
225 3dm5_A SRP54, signal recogniti 98.0 5.4E-06 1.8E-10 61.8 4.7 64 54-123 183-252 (443)
226 3h2y_A GTPase family protein; 97.9 2.3E-06 8E-11 62.4 1.7 57 63-125 55-111 (368)
227 3q5d_A Atlastin-1; G protein, 97.9 1.3E-05 4.3E-10 60.0 4.9 24 5-28 66-89 (447)
228 3ec1_A YQEH GTPase; atnos1, at 97.7 5.2E-06 1.8E-10 60.6 0.2 57 63-125 57-113 (369)
229 3kl4_A SRP54, signal recogniti 97.7 2.3E-05 7.8E-10 58.4 3.1 65 53-123 179-251 (433)
230 3asz_A Uridine kinase; cytidin 97.6 5.1E-05 1.7E-09 50.6 3.3 28 1-28 1-28 (211)
231 3ney_A 55 kDa erythrocyte memb 97.6 6.4E-05 2.2E-09 50.2 3.7 26 3-28 16-41 (197)
232 1ye8_A Protein THEP1, hypothet 97.5 6.3E-05 2.2E-09 49.4 3.4 22 7-28 1-22 (178)
233 1kgd_A CASK, peripheral plasma 97.5 5.7E-05 1.9E-09 49.4 3.2 22 7-28 6-27 (180)
234 1qf9_A UMP/CMP kinase, protein 97.5 7.6E-05 2.6E-09 48.8 3.8 28 1-28 1-28 (194)
235 1y63_A LMAJ004144AAA protein; 97.5 8.1E-05 2.8E-09 48.8 3.8 29 1-29 5-33 (184)
236 4eun_A Thermoresistant glucoki 97.5 9.1E-05 3.1E-09 49.2 3.5 24 5-28 28-51 (200)
237 2j41_A Guanylate kinase; GMP, 97.5 9.7E-05 3.3E-09 48.9 3.6 29 1-29 1-29 (207)
238 1lvg_A Guanylate kinase, GMP k 97.4 9E-05 3.1E-09 49.3 3.2 22 7-28 5-26 (198)
239 1nn5_A Similar to deoxythymidy 97.4 0.0001 3.4E-09 49.1 3.2 28 1-28 4-31 (215)
240 1puj_A YLQF, conserved hypothe 97.4 5.2E-05 1.8E-09 53.3 1.8 59 58-124 3-64 (282)
241 1knq_A Gluconate kinase; ALFA/ 97.4 0.00019 6.5E-09 46.4 4.1 24 5-28 7-30 (175)
242 4gp7_A Metallophosphoesterase; 97.4 9.4E-05 3.2E-09 48.0 2.6 18 8-25 11-28 (171)
243 1ex7_A Guanylate kinase; subst 97.4 0.00013 4.4E-09 48.3 3.2 21 9-29 4-24 (186)
244 1ly1_A Polynucleotide kinase; 97.4 0.00016 5.5E-09 46.7 3.6 22 7-28 3-24 (181)
245 3tr0_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 48.2 3.3 23 7-29 8-30 (205)
246 1zp6_A Hypothetical protein AT 97.3 0.00015 5E-09 47.5 3.4 24 6-29 9-32 (191)
247 3lw7_A Adenylate kinase relate 97.3 0.00015 5.2E-09 46.4 3.3 20 7-26 2-21 (179)
248 3a00_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 47.7 3.1 20 9-28 4-23 (186)
249 2qor_A Guanylate kinase; phosp 97.3 0.00015 5E-09 48.3 3.3 23 6-28 12-34 (204)
250 1ukz_A Uridylate kinase; trans 97.3 0.00023 7.9E-09 47.1 4.1 26 3-28 12-37 (203)
251 3tau_A Guanylate kinase, GMP k 97.3 0.00016 5.5E-09 48.4 3.3 23 7-29 9-31 (208)
252 3kb2_A SPBC2 prophage-derived 97.3 0.00018 6.1E-09 46.1 3.3 21 8-28 3-23 (173)
253 3fb4_A Adenylate kinase; psych 97.3 0.00018 6.3E-09 48.0 3.4 22 7-28 1-22 (216)
254 3vaa_A Shikimate kinase, SK; s 97.3 0.0002 6.9E-09 47.4 3.5 23 6-28 25-47 (199)
255 1s96_A Guanylate kinase, GMP k 97.3 0.00018 6E-09 48.8 3.3 23 7-29 17-39 (219)
256 3c8u_A Fructokinase; YP_612366 97.3 0.00019 6.6E-09 47.9 3.4 24 5-28 21-44 (208)
257 2cdn_A Adenylate kinase; phosp 97.3 0.00024 8.4E-09 47.0 3.9 25 4-28 18-42 (201)
258 1t9h_A YLOQ, probable GTPase E 97.3 8.9E-05 3E-09 52.8 1.8 22 8-29 175-196 (307)
259 3dl0_A Adenylate kinase; phosp 97.3 0.0002 6.7E-09 47.9 3.4 22 7-28 1-22 (216)
260 3tlx_A Adenylate kinase 2; str 97.2 0.00025 8.7E-09 48.6 3.9 25 4-28 27-51 (243)
261 3sr0_A Adenylate kinase; phosp 97.2 0.00021 7.3E-09 48.0 3.4 22 7-28 1-22 (206)
262 1z6g_A Guanylate kinase; struc 97.2 0.00019 6.6E-09 48.4 3.2 21 8-28 25-45 (218)
263 1kag_A SKI, shikimate kinase I 97.2 0.00022 7.4E-09 45.9 3.3 22 7-28 5-26 (173)
264 1znw_A Guanylate kinase, GMP k 97.2 0.0002 6.9E-09 47.8 3.2 21 8-28 22-42 (207)
265 1qhx_A CPT, protein (chloramph 97.2 0.00024 8.1E-09 46.0 3.2 22 7-28 4-25 (178)
266 2rhm_A Putative kinase; P-loop 97.2 0.00027 9.1E-09 46.2 3.5 24 5-28 4-27 (193)
267 3t61_A Gluconokinase; PSI-biol 97.2 0.00024 8.4E-09 47.0 3.2 22 7-28 19-40 (202)
268 1aky_A Adenylate kinase; ATP:A 97.2 0.00027 9.4E-09 47.4 3.5 24 5-28 3-26 (220)
269 3cm0_A Adenylate kinase; ATP-b 97.2 0.00035 1.2E-08 45.5 3.9 24 5-28 3-26 (186)
270 2plr_A DTMP kinase, probable t 97.2 0.00033 1.1E-08 46.4 3.8 23 6-28 4-26 (213)
271 3iij_A Coilin-interacting nucl 97.2 0.0003 1E-08 45.7 3.5 23 6-28 11-33 (180)
272 2bbw_A Adenylate kinase 4, AK4 97.2 0.00029 9.9E-09 48.2 3.4 22 6-27 27-48 (246)
273 2jaq_A Deoxyguanosine kinase; 97.2 0.00031 1.1E-08 46.2 3.5 21 8-28 2-22 (205)
274 1tev_A UMP-CMP kinase; ploop, 97.2 0.00035 1.2E-08 45.6 3.6 23 6-28 3-25 (196)
275 1nks_A Adenylate kinase; therm 97.1 0.0003 1E-08 45.9 3.3 21 8-28 3-23 (194)
276 1cke_A CK, MSSA, protein (cyti 97.1 0.00033 1.1E-08 47.1 3.6 23 6-28 5-27 (227)
277 1gvn_B Zeta; postsegregational 97.1 0.00034 1.2E-08 49.3 3.7 25 4-28 31-55 (287)
278 2bdt_A BH3686; alpha-beta prot 97.1 0.00029 9.8E-09 46.1 3.2 21 8-28 4-24 (189)
279 1uj2_A Uridine-cytidine kinase 97.1 0.00036 1.2E-08 48.0 3.6 26 3-28 19-44 (252)
280 1kht_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 45.4 3.5 22 7-28 4-25 (192)
281 1zd8_A GTP:AMP phosphotransfer 97.1 0.00029 1E-08 47.6 3.1 24 5-28 6-29 (227)
282 1np6_A Molybdopterin-guanine d 97.1 0.00035 1.2E-08 45.7 3.3 23 7-29 7-29 (174)
283 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00035 1.2E-08 50.9 3.5 23 4-26 31-53 (362)
284 3trf_A Shikimate kinase, SK; a 97.1 0.00038 1.3E-08 45.3 3.4 23 6-28 5-27 (185)
285 1e4v_A Adenylate kinase; trans 97.1 0.00031 1.1E-08 47.0 3.0 22 7-28 1-22 (214)
286 3ec2_A DNA replication protein 97.1 0.00039 1.3E-08 45.2 3.3 23 6-28 38-60 (180)
287 2vli_A Antibiotic resistance p 97.1 0.00021 7.3E-09 46.4 2.0 24 5-28 4-27 (183)
288 1zak_A Adenylate kinase; ATP:A 97.1 0.0003 1E-08 47.3 2.7 24 5-28 4-27 (222)
289 3be4_A Adenylate kinase; malar 97.1 0.00039 1.3E-08 46.7 3.2 24 5-28 4-27 (217)
290 2if2_A Dephospho-COA kinase; a 97.1 0.00038 1.3E-08 46.1 3.1 22 7-28 2-23 (204)
291 2rcn_A Probable GTPase ENGC; Y 97.0 0.00036 1.2E-08 50.7 3.1 23 8-30 217-239 (358)
292 2wwf_A Thymidilate kinase, put 97.0 0.00049 1.7E-08 45.7 3.5 24 5-28 9-32 (212)
293 2v54_A DTMP kinase, thymidylat 97.0 0.00054 1.9E-08 45.2 3.7 25 5-29 3-27 (204)
294 1uf9_A TT1252 protein; P-loop, 97.0 0.00049 1.7E-08 45.3 3.5 26 4-29 6-31 (203)
295 1via_A Shikimate kinase; struc 97.0 0.00043 1.5E-08 44.8 3.1 21 8-28 6-26 (175)
296 1odf_A YGR205W, hypothetical 3 97.0 0.00059 2E-08 48.2 4.0 24 4-27 29-52 (290)
297 2pt5_A Shikimate kinase, SK; a 97.0 0.00054 1.8E-08 43.8 3.5 21 8-28 2-22 (168)
298 1htw_A HI0065; nucleotide-bind 97.0 0.00047 1.6E-08 44.3 3.2 23 8-30 35-57 (158)
299 3tif_A Uncharacterized ABC tra 97.0 0.0004 1.4E-08 47.5 2.9 21 8-28 33-53 (235)
300 3uie_A Adenylyl-sulfate kinase 97.0 0.00036 1.2E-08 46.2 2.7 23 6-28 25-47 (200)
301 1ak2_A Adenylate kinase isoenz 97.0 0.00054 1.9E-08 46.5 3.6 24 5-28 15-38 (233)
302 2i3b_A HCR-ntpase, human cance 97.0 0.00046 1.6E-08 45.7 3.1 21 8-28 3-23 (189)
303 2c95_A Adenylate kinase 1; tra 97.0 0.00049 1.7E-08 45.1 3.2 24 5-28 8-31 (196)
304 1jbk_A CLPB protein; beta barr 97.0 0.00058 2E-08 44.0 3.5 24 6-29 43-66 (195)
305 2ehv_A Hypothetical protein PH 97.0 0.00047 1.6E-08 46.8 3.2 20 8-27 32-51 (251)
306 1jjv_A Dephospho-COA kinase; P 97.0 0.00062 2.1E-08 45.2 3.6 22 7-28 3-24 (206)
307 2xb4_A Adenylate kinase; ATP-b 97.0 0.00059 2E-08 46.1 3.5 21 8-28 2-22 (223)
308 2yvu_A Probable adenylyl-sulfa 97.0 0.00081 2.8E-08 43.9 4.0 24 5-28 12-35 (186)
309 2eyu_A Twitching motility prot 96.9 0.00055 1.9E-08 47.6 3.2 21 8-28 27-47 (261)
310 2p5t_B PEZT; postsegregational 96.9 0.00043 1.5E-08 47.7 2.7 24 5-28 31-54 (253)
311 2qt1_A Nicotinamide riboside k 96.9 0.00073 2.5E-08 44.9 3.6 24 5-28 20-43 (207)
312 1rz3_A Hypothetical protein rb 96.9 0.00077 2.6E-08 44.7 3.7 25 4-28 20-44 (201)
313 3umf_A Adenylate kinase; rossm 96.9 0.00065 2.2E-08 46.0 3.3 20 9-28 32-51 (217)
314 2ze6_A Isopentenyl transferase 96.9 0.00061 2.1E-08 47.0 3.2 21 8-28 3-23 (253)
315 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00076 2.6E-08 46.6 3.7 23 6-28 4-26 (260)
316 2yv5_A YJEQ protein; hydrolase 96.9 0.00058 2E-08 48.4 3.1 20 8-27 167-186 (302)
317 2bwj_A Adenylate kinase 5; pho 96.9 0.0005 1.7E-08 45.1 2.6 23 6-28 12-34 (199)
318 2pbr_A DTMP kinase, thymidylat 96.9 0.00075 2.5E-08 44.0 3.4 21 8-28 2-22 (195)
319 4a74_A DNA repair and recombin 96.9 0.00054 1.9E-08 45.9 2.8 21 8-28 27-47 (231)
320 3aez_A Pantothenate kinase; tr 96.9 0.00091 3.1E-08 47.7 4.1 25 4-28 88-112 (312)
321 2onk_A Molybdate/tungstate ABC 96.9 0.00066 2.3E-08 46.6 3.2 22 8-29 26-47 (240)
322 2pcj_A ABC transporter, lipopr 96.9 0.00052 1.8E-08 46.6 2.7 21 8-28 32-52 (224)
323 2v9p_A Replication protein E1; 96.9 0.00068 2.3E-08 48.2 3.3 22 7-28 127-148 (305)
324 3tqc_A Pantothenate kinase; bi 96.9 0.00095 3.2E-08 47.8 4.0 24 4-27 90-113 (321)
325 2jeo_A Uridine-cytidine kinase 96.9 0.00088 3E-08 45.8 3.7 24 5-28 24-47 (245)
326 1u0l_A Probable GTPase ENGC; p 96.9 0.00057 1.9E-08 48.4 2.8 23 8-30 171-193 (301)
327 2cbz_A Multidrug resistance-as 96.9 0.00064 2.2E-08 46.6 2.9 22 8-29 33-54 (237)
328 2f6r_A COA synthase, bifunctio 96.9 0.00079 2.7E-08 47.2 3.5 24 4-27 73-96 (281)
329 1b0u_A Histidine permease; ABC 96.9 0.00065 2.2E-08 47.2 3.0 22 8-29 34-55 (262)
330 3gfo_A Cobalt import ATP-bindi 96.8 0.00068 2.3E-08 47.5 3.0 21 8-28 36-56 (275)
331 2z0h_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 44.1 3.2 21 8-28 2-22 (197)
332 1mv5_A LMRA, multidrug resista 96.8 0.00079 2.7E-08 46.2 3.2 21 8-28 30-50 (243)
333 1e6c_A Shikimate kinase; phosp 96.8 0.00086 3E-08 43.0 3.2 21 8-28 4-24 (173)
334 1vht_A Dephospho-COA kinase; s 96.8 0.00099 3.4E-08 44.6 3.6 24 5-28 3-26 (218)
335 2ff7_A Alpha-hemolysin translo 96.8 0.00078 2.7E-08 46.4 3.2 22 8-29 37-58 (247)
336 1xjc_A MOBB protein homolog; s 96.8 0.00097 3.3E-08 43.4 3.5 22 7-28 5-26 (169)
337 1sgw_A Putative ABC transporte 96.8 0.00075 2.6E-08 45.5 3.0 22 8-29 37-58 (214)
338 4g1u_C Hemin import ATP-bindin 96.8 0.00072 2.5E-08 47.1 3.0 22 8-29 39-60 (266)
339 1lw7_A Transcriptional regulat 96.8 0.00063 2.2E-08 49.3 2.8 23 6-28 170-192 (365)
340 2iyv_A Shikimate kinase, SK; t 96.8 0.00087 3E-08 43.6 3.2 21 8-28 4-24 (184)
341 2pze_A Cystic fibrosis transme 96.8 0.00078 2.7E-08 45.8 3.0 22 8-29 36-57 (229)
342 1ixz_A ATP-dependent metallopr 96.8 0.00085 2.9E-08 45.9 3.2 22 8-29 51-72 (254)
343 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00084 2.9E-08 46.3 3.2 22 8-29 31-52 (250)
344 1g6h_A High-affinity branched- 96.8 0.00076 2.6E-08 46.7 2.9 22 8-29 35-56 (257)
345 2f1r_A Molybdopterin-guanine d 96.8 0.00033 1.1E-08 45.7 1.0 21 8-28 4-24 (171)
346 3lnc_A Guanylate kinase, GMP k 96.8 0.00057 1.9E-08 46.3 2.1 20 8-27 29-48 (231)
347 2olj_A Amino acid ABC transpor 96.8 0.00083 2.8E-08 46.8 3.0 21 8-28 52-72 (263)
348 2x8a_A Nuclear valosin-contain 96.8 0.00095 3.3E-08 46.6 3.2 21 8-28 46-66 (274)
349 1ji0_A ABC transporter; ATP bi 96.8 0.00085 2.9E-08 46.0 2.9 22 8-29 34-55 (240)
350 2ghi_A Transport protein; mult 96.7 0.00095 3.2E-08 46.3 3.2 22 8-29 48-69 (260)
351 2p65_A Hypothetical protein PF 96.7 0.00078 2.7E-08 43.3 2.6 23 6-28 43-65 (187)
352 2qi9_C Vitamin B12 import ATP- 96.7 0.00089 3E-08 46.2 3.0 22 8-29 28-49 (249)
353 2zu0_C Probable ATP-dependent 96.7 0.00097 3.3E-08 46.5 3.2 22 8-29 48-69 (267)
354 1gtv_A TMK, thymidylate kinase 96.7 0.00028 9.5E-09 46.9 0.4 21 8-28 2-22 (214)
355 2ixe_A Antigen peptide transpo 96.7 0.00086 3E-08 46.8 2.9 22 8-29 47-68 (271)
356 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.9E-08 42.4 3.3 22 7-28 8-29 (168)
357 1vpl_A ABC transporter, ATP-bi 96.7 0.00094 3.2E-08 46.3 3.0 22 8-29 43-64 (256)
358 3r20_A Cytidylate kinase; stru 96.7 0.0011 3.8E-08 45.4 3.3 23 5-27 8-30 (233)
359 3bos_A Putative DNA replicatio 96.7 0.0012 4E-08 44.3 3.4 23 6-28 52-74 (242)
360 2ihy_A ABC transporter, ATP-bi 96.7 0.0011 3.9E-08 46.5 3.2 21 8-28 49-69 (279)
361 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0011 3.9E-08 44.3 3.1 21 8-28 25-45 (235)
362 3b85_A Phosphate starvation-in 96.7 0.00075 2.5E-08 45.3 2.2 22 8-29 24-45 (208)
363 2pez_A Bifunctional 3'-phospho 96.7 0.0016 5.3E-08 42.2 3.7 23 6-28 5-27 (179)
364 2nq2_C Hypothetical ABC transp 96.7 0.0011 3.6E-08 45.9 2.9 22 8-29 33-54 (253)
365 2yz2_A Putative ABC transporte 96.7 0.0011 3.7E-08 46.2 2.9 21 8-28 35-55 (266)
366 4e22_A Cytidylate kinase; P-lo 96.7 0.0014 4.8E-08 45.1 3.5 21 7-27 28-48 (252)
367 1sq5_A Pantothenate kinase; P- 96.6 0.0014 4.8E-08 46.5 3.5 24 5-28 79-102 (308)
368 1in4_A RUVB, holliday junction 96.6 0.0012 4.1E-08 47.3 3.2 23 7-29 52-74 (334)
369 3jvv_A Twitching mobility prot 96.6 0.0012 4.2E-08 47.9 3.2 21 8-28 125-145 (356)
370 1ltq_A Polynucleotide kinase; 96.6 0.0015 5.1E-08 45.8 3.6 22 7-28 3-24 (301)
371 2kjq_A DNAA-related protein; s 96.6 0.00077 2.6E-08 42.8 1.9 21 8-28 38-58 (149)
372 4eaq_A DTMP kinase, thymidylat 96.6 0.002 6.8E-08 43.8 4.1 24 5-28 25-48 (229)
373 1lv7_A FTSH; alpha/beta domain 96.6 0.0016 5.4E-08 44.7 3.7 24 6-29 45-68 (257)
374 1iy2_A ATP-dependent metallopr 96.6 0.0013 4.5E-08 45.7 3.2 22 8-29 75-96 (278)
375 2pjz_A Hypothetical protein ST 96.6 0.0014 4.7E-08 45.6 3.2 23 8-30 32-54 (263)
376 1rj9_A FTSY, signal recognitio 96.6 0.0013 4.5E-08 46.7 3.2 22 6-27 102-123 (304)
377 1t9h_A YLOQ, probable GTPase E 96.6 0.0036 1.2E-07 44.5 5.4 52 71-125 80-132 (307)
378 2w58_A DNAI, primosome compone 96.6 0.0016 5.5E-08 42.9 3.4 23 7-29 55-77 (202)
379 2cvh_A DNA repair and recombin 96.6 0.0015 5.2E-08 43.4 3.2 21 8-28 22-42 (220)
380 1njg_A DNA polymerase III subu 96.6 0.0016 5.4E-08 43.4 3.2 21 8-28 47-67 (250)
381 2ewv_A Twitching motility prot 96.6 0.0015 5.3E-08 47.6 3.3 21 8-28 138-158 (372)
382 1azs_C GS-alpha; complex (lyas 96.6 0.0015 5.2E-08 48.2 3.3 23 4-26 38-60 (402)
383 3cnl_A YLQF, putative uncharac 96.5 0.00029 1E-08 49.0 -0.5 55 61-124 4-60 (262)
384 3nh6_A ATP-binding cassette SU 96.5 0.00087 3E-08 47.7 1.8 21 8-28 82-102 (306)
385 2chg_A Replication factor C sm 96.5 0.0017 5.7E-08 42.8 3.2 21 8-28 40-60 (226)
386 3crm_A TRNA delta(2)-isopenten 96.5 0.0022 7.6E-08 45.9 3.9 22 7-28 6-27 (323)
387 1m7g_A Adenylylsulfate kinase; 96.5 0.0023 8E-08 42.6 3.7 23 6-28 25-47 (211)
388 1n0w_A DNA repair protein RAD5 96.5 0.0018 6.3E-08 43.7 3.2 22 8-29 26-47 (243)
389 3t15_A Ribulose bisphosphate c 96.5 0.002 6.7E-08 45.4 3.4 25 5-29 35-59 (293)
390 2gza_A Type IV secretion syste 96.5 0.0015 5E-08 47.5 2.8 23 7-29 176-198 (361)
391 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0022 7.7E-08 43.8 3.6 23 6-28 39-61 (262)
392 2vp4_A Deoxynucleoside kinase; 96.5 0.0019 6.5E-08 43.7 3.2 24 6-29 20-43 (230)
393 2grj_A Dephospho-COA kinase; T 96.5 0.0024 8.2E-08 42.3 3.6 24 5-28 11-34 (192)
394 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0042 1.4E-07 46.5 5.2 23 5-27 66-88 (457)
395 3nwj_A ATSK2; P loop, shikimat 96.5 0.0018 6E-08 44.8 3.0 22 7-28 49-70 (250)
396 1cr0_A DNA primase/helicase; R 96.5 0.0016 5.3E-08 45.7 2.8 21 8-28 37-57 (296)
397 3tui_C Methionine import ATP-b 96.5 0.0019 6.3E-08 47.1 3.2 20 9-28 57-76 (366)
398 3syl_A Protein CBBX; photosynt 96.5 0.0021 7.2E-08 45.1 3.5 23 6-28 67-89 (309)
399 3b9q_A Chloroplast SRP recepto 96.5 0.0031 1E-07 44.8 4.3 23 6-28 100-122 (302)
400 3h4m_A Proteasome-activating n 96.5 0.0021 7.3E-08 44.6 3.4 24 6-29 51-74 (285)
401 3e70_C DPA, signal recognition 96.5 0.0027 9.1E-08 45.6 4.0 24 5-28 128-151 (328)
402 1a7j_A Phosphoribulokinase; tr 96.5 0.00089 3.1E-08 47.2 1.4 27 1-28 1-27 (290)
403 2bbs_A Cystic fibrosis transme 96.4 0.0017 5.7E-08 45.9 2.8 21 8-28 66-86 (290)
404 3zvl_A Bifunctional polynucleo 96.4 0.0025 8.6E-08 47.1 3.9 24 5-28 257-280 (416)
405 1z47_A CYSA, putative ABC-tran 96.4 0.002 6.7E-08 46.8 3.2 21 9-29 44-64 (355)
406 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0016 5.5E-08 46.7 2.7 22 8-29 173-194 (330)
407 3n70_A Transport activator; si 96.4 0.0023 8E-08 40.1 3.2 25 6-30 24-48 (145)
408 1q3t_A Cytidylate kinase; nucl 96.4 0.0025 8.5E-08 43.3 3.5 25 4-28 14-38 (236)
409 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0017 5.8E-08 47.2 2.8 21 9-29 33-53 (359)
410 3b9p_A CG5977-PA, isoform A; A 96.4 0.0021 7.2E-08 44.9 3.2 24 6-29 54-77 (297)
411 2yyz_A Sugar ABC transporter, 96.4 0.002 7E-08 46.8 3.2 22 8-29 31-52 (359)
412 1p9r_A General secretion pathw 96.4 0.0021 7E-08 47.7 3.2 22 8-29 169-190 (418)
413 3rlf_A Maltose/maltodextrin im 96.4 0.0021 7.3E-08 47.1 3.2 21 9-29 32-52 (381)
414 2it1_A 362AA long hypothetical 96.4 0.0021 7.3E-08 46.7 3.2 22 8-29 31-52 (362)
415 1d2n_A N-ethylmaleimide-sensit 96.4 0.0037 1.3E-07 43.2 4.2 26 4-29 62-87 (272)
416 1g29_1 MALK, maltose transport 96.4 0.0023 7.7E-08 46.8 3.2 21 9-29 32-52 (372)
417 1v43_A Sugar-binding transport 96.4 0.0023 7.9E-08 46.7 3.2 21 8-28 39-59 (372)
418 1tue_A Replication protein E1; 96.3 0.0018 6.3E-08 43.5 2.4 22 7-28 59-80 (212)
419 3d3q_A TRNA delta(2)-isopenten 96.3 0.0029 1E-07 45.6 3.6 22 7-28 8-29 (340)
420 1l8q_A Chromosomal replication 96.3 0.0026 8.8E-08 45.2 3.1 22 7-28 38-59 (324)
421 1ofh_A ATP-dependent HSL prote 96.3 0.0029 9.9E-08 44.2 3.2 23 6-28 50-72 (310)
422 3ake_A Cytidylate kinase; CMP 96.3 0.0042 1.4E-07 40.9 3.8 21 8-28 4-24 (208)
423 2og2_A Putative signal recogni 96.3 0.0045 1.5E-07 45.0 4.2 23 6-28 157-179 (359)
424 2dr3_A UPF0273 protein PH0284; 96.2 0.0026 8.9E-08 43.0 2.8 21 8-28 25-45 (247)
425 3cf0_A Transitional endoplasmi 96.2 0.0029 9.9E-08 44.6 3.1 24 6-29 49-72 (301)
426 1c9k_A COBU, adenosylcobinamid 96.2 0.0028 9.6E-08 41.7 2.8 21 9-29 2-22 (180)
427 2oap_1 GSPE-2, type II secreti 96.2 0.0025 8.6E-08 48.4 2.8 23 7-29 261-283 (511)
428 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0048 1.7E-07 44.8 4.1 23 5-27 23-45 (359)
429 4fcw_A Chaperone protein CLPB; 96.2 0.0045 1.6E-07 43.3 3.9 23 7-29 48-70 (311)
430 3kta_A Chromosome segregation 96.2 0.003 1E-07 40.8 2.8 21 8-28 28-48 (182)
431 1nlf_A Regulatory protein REPA 96.2 0.0028 9.5E-08 44.1 2.7 21 8-28 32-52 (279)
432 2qby_A CDC6 homolog 1, cell di 96.2 0.0028 9.6E-08 45.5 2.8 23 6-28 45-67 (386)
433 2yhs_A FTSY, cell division pro 96.2 0.0047 1.6E-07 46.8 4.1 23 6-28 293-315 (503)
434 3gmt_A Adenylate kinase; ssgci 96.2 0.0042 1.4E-07 42.4 3.5 24 5-28 7-30 (230)
435 1svm_A Large T antigen; AAA+ f 96.2 0.0034 1.2E-07 45.9 3.2 23 6-28 169-191 (377)
436 3d31_A Sulfate/molybdate ABC t 96.2 0.002 6.7E-08 46.7 1.9 22 8-29 28-49 (348)
437 3gd7_A Fusion complex of cysti 96.1 0.0029 1E-07 46.5 2.8 21 8-28 49-69 (390)
438 2qmh_A HPR kinase/phosphorylas 96.1 0.0035 1.2E-07 42.0 2.9 23 7-29 35-57 (205)
439 1fnn_A CDC6P, cell division co 96.1 0.0036 1.2E-07 45.1 3.2 22 8-29 46-67 (389)
440 1nij_A Hypothetical protein YJ 96.1 0.0022 7.4E-08 45.7 2.0 23 7-29 5-27 (318)
441 3ld9_A DTMP kinase, thymidylat 96.1 0.0051 1.8E-07 41.7 3.7 26 3-28 18-43 (223)
442 1p5z_B DCK, deoxycytidine kina 96.1 0.0026 8.9E-08 43.9 2.3 24 5-28 23-46 (263)
443 2obl_A ESCN; ATPase, hydrolase 96.1 0.0036 1.2E-07 45.3 3.1 23 8-30 73-95 (347)
444 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0032 1.1E-07 47.2 2.8 21 8-28 140-160 (460)
445 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0045 1.5E-07 44.1 3.4 23 7-29 46-68 (322)
446 1sxj_C Activator 1 40 kDa subu 96.1 0.0039 1.3E-07 44.6 3.1 21 9-29 49-69 (340)
447 1sxj_E Activator 1 40 kDa subu 96.1 0.0032 1.1E-07 45.0 2.6 20 9-28 39-58 (354)
448 2v1u_A Cell division control p 96.1 0.0038 1.3E-07 44.8 3.0 24 5-28 43-66 (387)
449 3eie_A Vacuolar protein sortin 96.1 0.0046 1.6E-07 44.0 3.4 24 6-29 51-74 (322)
450 2ocp_A DGK, deoxyguanosine kin 96.0 0.005 1.7E-07 41.8 3.3 23 6-28 2-24 (241)
451 4b4t_M 26S protease regulatory 96.0 0.0054 1.8E-07 45.7 3.6 25 5-29 214-238 (434)
452 4b4t_K 26S protease regulatory 96.0 0.0055 1.9E-07 45.6 3.7 24 6-29 206-229 (428)
453 1oxx_K GLCV, glucose, ABC tran 96.0 0.0019 6.5E-08 46.8 1.1 22 8-29 33-54 (353)
454 1sxj_D Activator 1 41 kDa subu 96.0 0.0046 1.6E-07 44.0 3.2 22 8-29 60-81 (353)
455 2qen_A Walker-type ATPase; unk 95.9 0.0051 1.8E-07 43.5 3.2 22 8-29 33-54 (350)
456 2dpy_A FLII, flagellum-specifi 95.9 0.0047 1.6E-07 46.1 3.1 23 8-30 159-181 (438)
457 3co5_A Putative two-component 95.9 0.0024 8E-08 40.0 1.3 24 6-29 27-50 (143)
458 3uk6_A RUVB-like 2; hexameric 95.9 0.0048 1.6E-07 44.3 3.0 23 7-29 71-93 (368)
459 3pxg_A Negative regulator of g 95.9 0.0047 1.6E-07 46.3 3.0 23 6-28 201-223 (468)
460 3tqf_A HPR(Ser) kinase; transf 95.9 0.0062 2.1E-07 39.9 3.1 23 7-29 17-39 (181)
461 2r62_A Cell division protease 95.9 0.0022 7.5E-08 44.1 1.1 22 7-28 45-66 (268)
462 3pfi_A Holliday junction ATP-d 95.9 0.0059 2E-07 43.4 3.3 24 6-29 55-78 (338)
463 3b60_A Lipid A export ATP-bind 95.9 0.0044 1.5E-07 47.7 2.9 21 8-28 371-391 (582)
464 2h92_A Cytidylate kinase; ross 95.9 0.0055 1.9E-07 40.8 3.0 23 6-28 3-25 (219)
465 2bjv_A PSP operon transcriptio 95.9 0.006 2E-07 41.9 3.3 25 6-30 29-53 (265)
466 4b4t_L 26S protease subunit RP 95.9 0.0066 2.3E-07 45.3 3.6 25 5-29 214-238 (437)
467 3b5x_A Lipid A export ATP-bind 95.9 0.0054 1.9E-07 47.2 3.3 21 8-28 371-391 (582)
468 1um8_A ATP-dependent CLP prote 95.9 0.0058 2E-07 44.3 3.3 24 6-29 72-95 (376)
469 1pzn_A RAD51, DNA repair and r 95.9 0.0047 1.6E-07 44.6 2.7 22 8-29 133-154 (349)
470 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0059 2E-07 38.6 2.9 19 9-27 26-44 (149)
471 1vma_A Cell division protein F 95.8 0.0096 3.3E-07 42.3 4.2 23 6-28 104-126 (306)
472 2qgz_A Helicase loader, putati 95.8 0.0066 2.3E-07 43.0 3.4 23 6-28 152-174 (308)
473 3foz_A TRNA delta(2)-isopenten 95.8 0.0087 3E-07 42.7 3.9 22 7-28 11-32 (316)
474 2fna_A Conserved hypothetical 95.8 0.0051 1.7E-07 43.6 2.8 22 8-29 32-53 (357)
475 3hws_A ATP-dependent CLP prote 95.8 0.0064 2.2E-07 43.9 3.3 24 6-29 51-74 (363)
476 2qp9_X Vacuolar protein sortin 95.8 0.0063 2.2E-07 43.9 3.2 23 7-29 85-107 (355)
477 2qby_B CDC6 homolog 3, cell di 95.8 0.0055 1.9E-07 44.1 2.8 23 6-28 45-67 (384)
478 3exa_A TRNA delta(2)-isopenten 95.8 0.0074 2.5E-07 43.1 3.4 22 8-29 5-26 (322)
479 3u61_B DNA polymerase accessor 95.8 0.026 8.8E-07 39.9 6.2 21 9-29 51-71 (324)
480 3a8t_A Adenylate isopentenyltr 95.8 0.0071 2.4E-07 43.6 3.3 21 8-28 42-62 (339)
481 3euj_A Chromosome partition pr 95.7 0.0065 2.2E-07 45.8 3.2 21 8-28 31-51 (483)
482 2px0_A Flagellar biosynthesis 95.7 0.0059 2E-07 43.1 2.8 22 6-27 105-126 (296)
483 3d8b_A Fidgetin-like protein 1 95.7 0.0078 2.7E-07 43.5 3.5 24 6-29 117-140 (357)
484 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0072 2.5E-07 46.2 3.4 22 8-29 49-70 (538)
485 2z4s_A Chromosomal replication 95.7 0.0066 2.2E-07 45.2 3.1 22 7-28 131-152 (440)
486 3m6a_A ATP-dependent protease 95.7 0.0067 2.3E-07 46.4 3.1 21 8-28 110-130 (543)
487 1tf7_A KAIC; homohexamer, hexa 95.7 0.0059 2E-07 46.4 2.7 19 8-26 41-59 (525)
488 2zts_A Putative uncharacterize 95.7 0.008 2.7E-07 40.6 3.2 20 8-27 32-51 (251)
489 3lda_A DNA repair protein RAD5 95.7 0.0062 2.1E-07 44.9 2.7 21 8-28 180-200 (400)
490 4edh_A DTMP kinase, thymidylat 95.6 0.0084 2.9E-07 40.3 3.2 23 6-28 6-28 (213)
491 4b4t_J 26S protease regulatory 95.6 0.008 2.7E-07 44.4 3.1 24 6-29 182-205 (405)
492 3pvs_A Replication-associated 95.6 0.0087 3E-07 44.7 3.4 23 7-29 51-73 (447)
493 2axn_A 6-phosphofructo-2-kinas 95.6 0.01 3.4E-07 45.2 3.8 22 6-27 35-56 (520)
494 2r44_A Uncharacterized protein 95.6 0.005 1.7E-07 43.7 1.9 21 8-28 48-68 (331)
495 1iqp_A RFCS; clamp loader, ext 95.6 0.009 3.1E-07 41.9 3.2 22 8-29 48-69 (327)
496 2yl4_A ATP-binding cassette SU 95.6 0.0049 1.7E-07 47.6 2.0 21 8-28 372-392 (595)
497 3ozx_A RNAse L inhibitor; ATP 95.6 0.0076 2.6E-07 46.1 3.0 22 8-29 27-48 (538)
498 3qf4_B Uncharacterized ABC tra 95.6 0.0054 1.8E-07 47.4 2.2 21 8-28 383-403 (598)
499 3vfd_A Spastin; ATPase, microt 95.6 0.0097 3.3E-07 43.4 3.5 24 6-29 148-171 (389)
500 4a82_A Cystic fibrosis transme 95.5 0.0047 1.6E-07 47.5 1.8 21 8-28 369-389 (578)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.9e-33 Score=192.40 Aligned_cols=123 Identities=29% Similarity=0.512 Sum_probs=101.4
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
|.+.+||+++|++|||||||++||+.+.|...+.+|++..+ ...+..++..+++++|||+|+++|+.+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34679999999999999999999999999999999997665 56777888999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~ 126 (139)
++|||++++++|+.+ ..|+..+... .+++|++|||||+|+.+.+
T Consensus 90 ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 90 VVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred EEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 999999999999999 8888888765 4789999999999997554
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=3.3e-30 Score=174.96 Aligned_cols=125 Identities=82% Similarity=1.321 Sum_probs=112.1
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
|+....+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||+||+++++.++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 66778899999999999999999999999988888888877777777788888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+++|||++++++++.+.+.|+..+....++.|+++|+||+|+...
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 999999999999999855899999988789999999999999654
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=9.9e-30 Score=170.49 Aligned_cols=122 Identities=47% Similarity=0.877 Sum_probs=112.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 35679999999999999999999999999888888888888777888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||+++++++..+...|+..+....++.|+++|+||+|+..
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999999999999987899999998888999999999999974
No 4
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=1.7e-29 Score=167.33 Aligned_cols=124 Identities=30% Similarity=0.443 Sum_probs=110.1
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
|++.+.+||+++|++|+|||||+++++++.+...+.++.+..+...+..++..+.+.+||+||++.++..+..+++++|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 67788999999999999999999999999988888888887777777889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
+++|||++++++++.+ ..|+..+.+.. +++|+++|+||+|+...
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 9999999999999998 77888886653 58999999999998643
No 5
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.1e-29 Score=169.08 Aligned_cols=122 Identities=36% Similarity=0.718 Sum_probs=110.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+...+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45789999999999999999999999999888888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||++++++++.+.+.|+..+++..++.|+++|+||+|+..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 999999999999986789999988888999999999999974
No 6
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=169.57 Aligned_cols=123 Identities=54% Similarity=1.051 Sum_probs=111.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
++..+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||+++++..+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34679999999999999999999999998888888887777667777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|||+++++++..+...|+..+....++.|+++|+||+|+...
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 9999999999999855899999988789999999999999653
No 7
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.1e-29 Score=173.25 Aligned_cols=121 Identities=36% Similarity=0.664 Sum_probs=109.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|||||||+++|+++.+...+.++.+..+...+..++..+.+.+||++|+++++.++..+++++|++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 45799999999999999999999999998888888888887777788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|||+++++++..+.+.|+..+....++.|+++||||+|+..
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999999999944999999999888999999999999965
No 8
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=167.70 Aligned_cols=121 Identities=22% Similarity=0.387 Sum_probs=104.0
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+...+||+++|.+|||||||+++|+++.+...+.++.+..+......++..+.+.+||++|++.++.+ ..+++.+++++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45679999999999999999999999999888888888777667778899999999999999998875 56899999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 99999999999998 78988887653 68999999999999654
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=2e-30 Score=171.76 Aligned_cols=125 Identities=91% Similarity=1.407 Sum_probs=94.5
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
|++++.+||+++|++|+|||||++++..+.+...+.++.+..+...+..++..+.+.+||+||+++++..+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 56678899999999999999999999999988777777766665555566777889999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+++|||++++.+++.+.+.|+..+....++.|+++|+||+|+...
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 999999999999999955899999988789999999999998654
No 10
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=168.51 Aligned_cols=122 Identities=55% Similarity=0.985 Sum_probs=103.0
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
..+.+||+++|.+|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||+++++.++..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 35679999999999999999999999988877788887777777788888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|||+++++++..+...|+..+....++.|+++|+||+|+..
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999999999999985589999988878999999999999975
No 11
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=3.5e-29 Score=169.84 Aligned_cols=121 Identities=36% Similarity=0.725 Sum_probs=110.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|||||||+++|..+.+...+.++.+..+...+..++..+.+.+||++|++.+..++..++++++++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 45799999999999999999999999998888888877776677778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+.+.|+..+++..++.|+++|+||+|+..
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999999999986789999988878999999999999974
No 12
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=6.3e-29 Score=164.86 Aligned_cols=122 Identities=69% Similarity=1.149 Sum_probs=111.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||+++++..+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999988887888877777777788999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|||++++.++..+...|+..+....++.|+++|+||+|+...
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 999999999999855899999888789999999999999753
No 13
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1.4e-28 Score=165.93 Aligned_cols=122 Identities=55% Similarity=0.962 Sum_probs=111.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+..+||+++|.+|+|||||++++..+.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 35789999999999999999999999988887888877776667788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++..+.+.|+..+....++.|+++|+||+|+...
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 999999999999877899999888789999999999999754
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=161.79 Aligned_cols=123 Identities=33% Similarity=0.612 Sum_probs=107.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999988877777776555 45677788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+...+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERK 129 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhc
Confidence 999999999999998 88999998888899999999999987544
No 15
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=167.03 Aligned_cols=125 Identities=30% Similarity=0.428 Sum_probs=104.0
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
|+..+.+||+++|.+|||||||++++.++.+...+.++.+..+......++..+.+.+||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 44567899999999999999999999999998888888877776666667778899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
+++|||++++++++.+ ..|+..+.... +++|+++|+||+|+...+
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPER 145 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCcccc
Confidence 9999999999999998 78888887653 579999999999987544
No 16
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=7.3e-29 Score=169.00 Aligned_cols=122 Identities=45% Similarity=0.861 Sum_probs=90.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 35799999999999999999999999888777788777777777888988999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|||++++.+++.+...|+..+....+++|+++|+||+|+...
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 999999999999855899999888889999999999999754
No 17
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=7.8e-29 Score=163.75 Aligned_cols=116 Identities=23% Similarity=0.348 Sum_probs=100.4
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
|...+.+||+++|++|||||||+++|.++.+.+ +.++.+..+...+..++..+.+++||++|+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 667788999999999999999999999999876 67777777777778888889999999999987 457889999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh---C-CCCCEEEEeecCCcc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHY---A-PGVPIILVGTKLGKI 123 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~---~-~~~~vivv~nK~D~~ 123 (139)
+++|||++++++++.+ ..|+..+... . +++|+++||||+|+.
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999998 7776655443 2 589999999999984
No 18
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=6.9e-29 Score=167.98 Aligned_cols=123 Identities=68% Similarity=1.155 Sum_probs=109.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45799999999999999999999999998888888877777777888888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
|||++++.+++.+...|+..+....++.|+++|+||+|+...+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccch
Confidence 9999999999999558999999888899999999999997543
No 19
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=166.02 Aligned_cols=122 Identities=54% Similarity=0.948 Sum_probs=105.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|.+|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999999988777788777776667788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++..+.+.|+..+....++.|+++|+||+|+...
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 999999999999878899999887789999999999999754
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=3.1e-28 Score=159.16 Aligned_cols=122 Identities=33% Similarity=0.591 Sum_probs=107.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
+.+.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++....+.+||+||+++++..+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45689999999999999999999999988877777776555 45666788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++|||++++++++.+ ..|+..+.... +++|+++|+||+|+...
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 999999999999998 78888887654 78999999999999654
No 21
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=2.5e-28 Score=159.42 Aligned_cols=122 Identities=34% Similarity=0.591 Sum_probs=107.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
.++.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999998877777776554 55667788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+...
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 999999999999998 7788888776678999999999999754
No 22
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=1.5e-28 Score=160.34 Aligned_cols=121 Identities=28% Similarity=0.497 Sum_probs=107.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888777777777788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~ 126 (139)
||++++++++.+ ..|+..+... .++.|+++|+||+|+...+
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDER 124 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECccccccc
Confidence 999999999998 7788777664 3689999999999997543
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=2.1e-28 Score=162.32 Aligned_cols=120 Identities=33% Similarity=0.543 Sum_probs=108.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|++|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999999988888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+... .+++|+++|+||+|+..
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9999999999998 7788877653 36899999999999865
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=2.9e-28 Score=159.53 Aligned_cols=122 Identities=33% Similarity=0.628 Sum_probs=100.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999998877777776655 45666788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 999999999999998 78888887654 67999999999999754
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=6.4e-28 Score=157.79 Aligned_cols=123 Identities=27% Similarity=0.565 Sum_probs=108.8
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ......++....+.+||+||++.+......+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998877777776655 45667788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
++|||++++.++..+ +.|+..+.... ++.|+++|+||+|+...+
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 999999999999998 88999888764 789999999999997543
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=166.11 Aligned_cols=121 Identities=32% Similarity=0.591 Sum_probs=100.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999998877777776555 556777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++++.+ ..|+..+.... +++|+++|+||+|+...
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 99999999999998 78999888765 78999999999999753
No 27
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=7.1e-28 Score=159.28 Aligned_cols=122 Identities=34% Similarity=0.599 Sum_probs=107.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4679999999999999999999999998877777776554 456667888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 99999999999998 88888887765 689999999999996543
No 28
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.4e-28 Score=164.52 Aligned_cols=121 Identities=32% Similarity=0.621 Sum_probs=107.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|||||||+++|+.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999998877777776655 456778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 99999999999998 88999888765 57999999999999743
No 29
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=2.4e-28 Score=159.22 Aligned_cols=121 Identities=31% Similarity=0.553 Sum_probs=105.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46999999999999999999999999887777887777777777888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
||+++++++..+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 999999999998 88888887654 489999999999997543
No 30
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=1.1e-27 Score=159.91 Aligned_cols=122 Identities=31% Similarity=0.594 Sum_probs=107.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 4579999999999999999999999998877777776655 455667888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 99999999999998 78998888765 689999999999997543
No 31
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=7.8e-28 Score=162.60 Aligned_cols=122 Identities=34% Similarity=0.666 Sum_probs=108.4
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 35679999999999999999999999998887777776655 45667788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 999999999999998 78998887765 67999999999999754
No 32
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=4e-28 Score=161.92 Aligned_cols=114 Identities=25% Similarity=0.401 Sum_probs=101.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+.+.+||+++|++|||||||+++|+++.+...+.++ ...+...+.+++..+.+.+|||+|++.++ +++++|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 456899999999999999999999999998777776 44556778889999999999999999877 788899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~ 123 (139)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 91 FVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999998 77999988764 589999999999984
No 33
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=4.6e-28 Score=162.06 Aligned_cols=121 Identities=29% Similarity=0.584 Sum_probs=103.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 5679999999999999999999999998877777766555 456777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 99999999999998 77988887764 68999999999999653
No 34
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=1.3e-28 Score=163.25 Aligned_cols=121 Identities=29% Similarity=0.628 Sum_probs=81.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999888777777776555 456677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 99999999999998 77998887764 68999999999999754
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=3.9e-28 Score=160.26 Aligned_cols=123 Identities=32% Similarity=0.522 Sum_probs=108.4
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+.+.+||+++|.+|+|||||+++++++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 35679999999999999999999999998888888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHh-hhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELR-HYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~-~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||+++++++..+ ..|+..+. ... .+.|+++|+||+|+...+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQR 130 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 99999999999998 77777763 333 689999999999997543
No 36
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=5.6e-28 Score=160.63 Aligned_cols=120 Identities=33% Similarity=0.566 Sum_probs=105.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|++|||||||++++.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56899999999999999999999999988888888877777777889999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 9999999999998 78888887654 6899999999999964
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=7.1e-28 Score=157.43 Aligned_cols=120 Identities=33% Similarity=0.614 Sum_probs=106.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
+.+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998877777776655 4566778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 9999999999998 77888887664 68999999999999754
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=5.8e-28 Score=161.25 Aligned_cols=122 Identities=31% Similarity=0.595 Sum_probs=106.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ 81 (139)
.+.+||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++ .++..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4679999999999999999999999998877777776554 4566778888999999999999988 7888999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAI 143 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 999999999999998 77988887763 689999999999997543
No 39
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=162.64 Aligned_cols=122 Identities=31% Similarity=0.543 Sum_probs=109.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 45799999999999999999999999988888888877777777788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
|||+++++++..+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR 135 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence 9999999999998 88988887765 489999999999997543
No 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=6.3e-28 Score=157.11 Aligned_cols=121 Identities=32% Similarity=0.546 Sum_probs=106.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|++|+|||||++++.++.+...+.++....+...+..++....+.+||+||++.+...+..++++++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888777877766677778888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
||++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+...+
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESER 124 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence 999999999998 77777776543 589999999999987543
No 41
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.6e-28 Score=164.79 Aligned_cols=122 Identities=33% Similarity=0.578 Sum_probs=101.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+++++.++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999998877777776655 45667788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+...
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 999999999999998 78999887764 58999999999999753
No 42
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=8.7e-28 Score=160.78 Aligned_cols=122 Identities=34% Similarity=0.697 Sum_probs=108.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4579999999999999999999999998888777776555 456777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 99999999999998 78998887765 579999999999997544
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=8e-28 Score=158.52 Aligned_cols=122 Identities=30% Similarity=0.597 Sum_probs=107.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
.++.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 35679999999999999999999999998777777776554 55667788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 999999999999998 88988887765 78999999999999643
No 44
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.5e-28 Score=163.23 Aligned_cols=123 Identities=28% Similarity=0.438 Sum_probs=106.4
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
|.+.+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345668999999999999999999999999988888888777777777888889999999999998 7778889999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
+++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 9999999999999998 77888877642 68999999999999754
No 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=4.9e-28 Score=160.54 Aligned_cols=122 Identities=31% Similarity=0.543 Sum_probs=108.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|+|||||+++++.+.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999988887888877777777788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
|||+++++++..+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 139 (187)
T 2a9k_A 96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR 139 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGC
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence 9999999999998 78888887654 389999999999997543
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=8.9e-28 Score=159.55 Aligned_cols=121 Identities=31% Similarity=0.554 Sum_probs=106.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999998877777776554 556677888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 99999999999998 78888887654 68999999999999643
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=1.4e-27 Score=160.86 Aligned_cols=122 Identities=30% Similarity=0.591 Sum_probs=107.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|||||||++++++..+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4679999999999999999999999998877777776555 456667888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 99999999999998 78998888765 689999999999997543
No 48
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.5e-28 Score=158.66 Aligned_cols=121 Identities=28% Similarity=0.503 Sum_probs=105.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|.+|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999998887777777766666677788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~ 126 (139)
||++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+...+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSR 125 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence 999999999988 77777776543 589999999999997544
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.3e-27 Score=157.43 Aligned_cols=119 Identities=36% Similarity=0.691 Sum_probs=103.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 5689999999999999999999999998877777776655 556777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~ 123 (139)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999999999998 88888886543 678999999999986
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-27 Score=160.28 Aligned_cols=120 Identities=27% Similarity=0.550 Sum_probs=107.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+||+++|.+|+|||||+++++++.+...+.++.+..+ ...+..++....+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4679999999999999999999999998777777776655 445667778889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+..
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999999998 88999888765 5899999999999974
No 51
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=159.55 Aligned_cols=123 Identities=33% Similarity=0.531 Sum_probs=107.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
..+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999998877777766555 45666788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 146 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQAR 146 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCccccc
Confidence 999999999999998 78888887654 689999999999997543
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=8.8e-28 Score=158.30 Aligned_cols=122 Identities=32% Similarity=0.534 Sum_probs=106.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999988877777776544 556677888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 99999999999998 78888876653 689999999999997543
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.5e-27 Score=155.78 Aligned_cols=122 Identities=34% Similarity=0.678 Sum_probs=98.4
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
.+..+||+++|.+|+|||||++++.++.+.. .+.++.+..+. ..+..++..+.+.+||+||++.++..+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 3568999999999999999999999988853 55666666553 345678888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 9999999999999998 88988888765 68999999999999753
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=8.8e-28 Score=157.11 Aligned_cols=118 Identities=31% Similarity=0.655 Sum_probs=99.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999998877777776555 4566677778899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~ 123 (139)
|||++++.+++.+ +.|+..+.... ++.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 9999999999998 88988887765 689999999999984
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=163.00 Aligned_cols=120 Identities=33% Similarity=0.577 Sum_probs=96.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
..+.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45679999999999999999999999998777777776555 45677888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~ 123 (139)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999998 78998887765 689999999999996
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=8.5e-28 Score=158.75 Aligned_cols=121 Identities=31% Similarity=0.630 Sum_probs=91.1
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
..+.+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+ +....+.+||+||++.++..+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 35689999999999999999999999998877777775544 4455555 556889999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIF 124 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~ 124 (139)
+++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+..
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 9999999999999998 88888876543 6799999999999953
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=156.31 Aligned_cols=122 Identities=25% Similarity=0.352 Sum_probs=92.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ 81 (139)
...+||+++|++|||||||++++.+..+...+.....+.+...+..++..+.+.+||++|++. +..+...+++.++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999988765433322333456677888889999999999987 566777888999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~ 127 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCR 127 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhcccc
Confidence 999999999999998 78888887652 589999999999997543
No 58
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.1e-28 Score=162.18 Aligned_cols=122 Identities=30% Similarity=0.559 Sum_probs=100.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999888777777765554 556677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ +.|+..+.... .+.|+++|+||+|+...+
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDR 147 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 99999999999998 88998888765 589999999999997543
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=3.5e-27 Score=157.38 Aligned_cols=120 Identities=33% Similarity=0.559 Sum_probs=97.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|||||||++++..+.+...+.++....+...+..++..+.+.+||+||++++...+..+++.++++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 45799999999999999999999999888777777777777777788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 9999999999998 88888887654 4799999999999864
No 60
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.5e-27 Score=155.68 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=82.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (139)
.+||+++|++|||||||++++.+..+. ...++.+..+...+..++..+.+.+||++|++.++..+..+++.++++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876654 2334555555667778999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 99999999998 77888776643 689999999999997543
No 61
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=8.7e-28 Score=162.05 Aligned_cols=122 Identities=33% Similarity=0.583 Sum_probs=97.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
+..+||+++|.+|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999988777777776554 456667888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPER 146 (200)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 99999999999998 78888887654 689999999999996443
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=2.4e-27 Score=158.96 Aligned_cols=120 Identities=32% Similarity=0.579 Sum_probs=103.3
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeE--------------------------
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST-------------------------- 53 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------- 53 (139)
|+....+||+++|++|+|||||++++++..+...+.++.+..+ ...+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 6777889999999999999999999999998877777776554 3444444443
Q ss_pred -----------EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 032516 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGK 122 (139)
Q Consensus 54 -----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~ 122 (139)
..+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+....+ .|+++|+||+|+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D~ 159 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKIDK 159 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTTC
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCCc
Confidence 7899999999999999999999999999999999999999998 889988887654 999999999994
No 63
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=3.9e-28 Score=160.14 Aligned_cols=122 Identities=28% Similarity=0.492 Sum_probs=103.2
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 80 (139)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++ ....+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999888766666665443 55666665 67899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~-vivv~nK~D~~~~ 125 (139)
+++|||++++++++.+ ..|+..+.... .+.| +++|+||+|+...
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 9999999999999998 78988887643 2455 8999999999754
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=158.40 Aligned_cols=119 Identities=33% Similarity=0.674 Sum_probs=106.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 3579999999999999999999999998887777776555 456677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~ 123 (139)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 93 LVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 99999999999998 78999887764 579999999999985
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=3.4e-27 Score=157.25 Aligned_cols=121 Identities=35% Similarity=0.553 Sum_probs=105.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee--EEEEECCe---------EEEEEEEeCCCccccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 72 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~ 72 (139)
.+.+||+++|++|+|||||++++.++.+.+.+.++.+..+. ..+..++. .+.+.+||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999988777777766553 34445554 78999999999999999999
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
.+++++|++++|||++++.++..+ ..|+..+.... +++|+++|+||+|+...
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 999999999999999999999998 78988887765 68999999999999753
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=3e-27 Score=159.48 Aligned_cols=119 Identities=31% Similarity=0.633 Sum_probs=104.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|+|||||++++++..+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4679999999999999999999999998877777775554 556667788889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~ 123 (139)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 99999999999998 88888776543 478999999999997
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=2.5e-27 Score=155.11 Aligned_cols=120 Identities=24% Similarity=0.336 Sum_probs=89.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL 83 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 83 (139)
.+||+++|++|||||||++++.+..+...+.++. ...+...+..++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999876655444433 334466677889899999999999998876 77778899999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~ 126 (139)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSR 125 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGC
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhcc
Confidence 9999999999998 78888887765 389999999999997443
No 68
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=5.9e-28 Score=164.96 Aligned_cols=121 Identities=31% Similarity=0.495 Sum_probs=107.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|.+|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999988877776667765444 556677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|||++++.++..+ ..|+..+.+..++.|+++|+||+|+...
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99999999999998 7899999988889999999999999643
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=5.2e-28 Score=163.09 Aligned_cols=121 Identities=31% Similarity=0.408 Sum_probs=76.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeee-eeEEEEECCe--EEEEEEEeCCCcccccccccccccC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDN-FSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYRG 77 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~ 77 (139)
....+||+++|++|+|||||++++..+ .+...+.++.+.. ....+..++. .+.+.+||+||++.+...+..++++
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 346789999999999999999999998 7777777777633 4556667776 8899999999999999999999999
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC----CCCEEEEeecCCccc
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLGKIF 124 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~----~~~vivv~nK~D~~~ 124 (139)
+|++++|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+..
T Consensus 97 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 9999999999999999998 789999887654 899999999999975
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=4.1e-27 Score=152.98 Aligned_cols=119 Identities=33% Similarity=0.567 Sum_probs=106.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|++|+|||||++++..+.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35899999999999999999999998887777777776677777888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 999999999998 88888887764 3899999999999865
No 71
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.6e-28 Score=163.33 Aligned_cols=122 Identities=34% Similarity=0.606 Sum_probs=107.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4579999999999999999999999998877777776554 456667778889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEER 144 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 99999999999998 77999998866 689999999999986543
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=8.8e-27 Score=157.81 Aligned_cols=119 Identities=31% Similarity=0.651 Sum_probs=104.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|++|+|||||+++++...+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4569999999999999999999999998877777776555 456677888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~ 123 (139)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999999999998 78988887765 479999999999984
No 73
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=159.69 Aligned_cols=121 Identities=26% Similarity=0.379 Sum_probs=98.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ 81 (139)
...+||+++|++|||||||+++|.+..+...+.++. ...+...+.+++..+.+.+||++|++.+.. ++..+++.++++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 457999999999999999999997544332233333 333455667889899999999999998765 777888999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
++|||++++++++.+ ..|+..+.... +++|+++||||+|+...
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 999999999999998 78888887654 48999999999999743
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=158.58 Aligned_cols=121 Identities=29% Similarity=0.503 Sum_probs=106.1
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+..+||+++|.+|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35679999999999999999999999998877778877777667777888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIF 124 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~ 124 (139)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999999999998 66777665542 5789999999999964
No 75
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.3e-26 Score=157.97 Aligned_cols=121 Identities=23% Similarity=0.426 Sum_probs=97.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 80 (139)
...+||+++|++|||||||+++|++.. +...+.++..+.+...+.+++..+.+.+|||+|++. ++.+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456999999999999999999999643 344433333333466677889989999999999886 56677788899999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
+++|||++++++|+.+ ..|...+.+. .+++|+++||||+|+...
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence 9999999999999998 7788877653 258999999999999754
No 76
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=1.8e-27 Score=161.94 Aligned_cols=122 Identities=38% Similarity=0.603 Sum_probs=104.1
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCe----------EEEEEEEeCCCcccccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLR 71 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~ 71 (139)
.++.+||+++|.+|||||||+++|+...+...+.++.+..+ ...+.+++. .+.+.+||+||+++++..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 35679999999999999999999999988776667766554 345555554 7889999999999999999
Q ss_pred cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~ 125 (139)
..+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 9999999999999999999999998 78988887654 68999999999999754
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=4.5e-27 Score=157.62 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=95.8
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
+....||+++|.+|||||||+++|+++.+.. .+.++.+... ..+ +...+.+.+|||+|++.++..+..+++++|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 3567999999999999999999999999887 6677766332 223 34457899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~---------~~~~vivv~nK~D~~~~ 125 (139)
++|||+++++++..+ ..|+..+.... +++|+++|+||+|+...
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999999999998 66666654431 28999999999999755
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1.9e-27 Score=158.96 Aligned_cols=121 Identities=26% Similarity=0.312 Sum_probs=95.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------ceeeee-eEEE-EECCeEEEEEEEeCCCcccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-----------TVFDNF-SANV-VVDGSTVNLGLWDTAGQEDYNR 69 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-----------~~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~~~ 69 (139)
.+..+||+++|++|||||||+ +++.+.+...+.+ +.+..+ ...+ ..++..+.+++|||||+++++.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 356799999999999999999 5555565554332 333332 2222 4566788999999999999999
Q ss_pred cccccccCccEEEEEEeCC------CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 70 LRPLSYRGADVFILAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.+..+++++|++++|||++ +.++++.+ ..|+..++...+++|+++|+||+|+...
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc
Confidence 9999999999999999999 56777787 7788888655688999999999998643
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=6.5e-27 Score=156.21 Aligned_cols=118 Identities=23% Similarity=0.346 Sum_probs=98.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|+|||||++++.++.+...+.++.+..+. .+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KIT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 46799999999999999999999999988777777765543 233 335679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++..+ ..|+..+... ..+.|+++|+||+|+...
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999999999998 6666665442 268999999999999754
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=5e-28 Score=162.92 Aligned_cols=122 Identities=34% Similarity=0.697 Sum_probs=102.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+||+++|.+|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4579999999999999999999999888776666665554 456677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence 99999999999998 78999887765 579999999999997443
No 81
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=3.5e-26 Score=164.16 Aligned_cols=121 Identities=68% Similarity=1.165 Sum_probs=110.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
..+||+++|.+|+|||||++++.++.+...+.+++...+...+..++..+.+.+||+||++.+......+++++|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999999988888888777777778889999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
||++++.++..+...|+..+....++.|+++|+||+|+...
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 99999999999855899999888789999999999999653
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=8.1e-26 Score=151.33 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=95.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ .++.+||+||++.++..+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999998875 345555443 34555565 679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+.+. .++.|+++|+||+|+..
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 9999999999998 6677666543 26899999999999975
No 83
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.90 E-value=6.6e-29 Score=167.76 Aligned_cols=122 Identities=70% Similarity=1.175 Sum_probs=108.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 56799999999999999999999998888777777776666666677788889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
|||++++.+++.+...|+..+....++.|+++|+||+|+...
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 999999999999855899998887678999999999999754
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=2.6e-26 Score=154.74 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=89.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||+++++..+..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988764 345555443 34555565 689999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
|||+++++++..+ ..|+..+.+. .+++|+++|+||+|+..
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 9999999999998 6777766543 26899999999999964
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=1.7e-26 Score=150.42 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=93.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (139)
+||+++|++|||||||++++.++.+.. +.++.+.. ...+. .....+.+||+||++.++..+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999988764 45555522 22333 344679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 87 ~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
+++++++..+ ..|+..+... .++.|+++|+||+|+...
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 9999999998 6676666442 368999999999999654
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.94 E-value=6.9e-26 Score=150.61 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=96.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|++|||||||++++.++. ...+.++.+.. ...+..+ ...+.+|||||+++++..+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 567999999999999999999999888 55566666533 3344444 3679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
|||++++++++.+ ..|+..+.+. .++.|+++|+||+|+...
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 9999999999998 6666665443 368999999999999754
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.5e-26 Score=153.05 Aligned_cols=116 Identities=17% Similarity=0.264 Sum_probs=93.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|||||||++++.++.+. .+.++.+.. ...+..++ ..+.+||+||+++++..+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56799999999999999999999988876 445555432 33444554 679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9999999999998 6677776654 36899999999999975
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=151.90 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=96.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
.+.+||+++|.+|+|||||++++.+.. +...+.++.+. ....+..++ ..+.+||++|++.++..+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999877 55555666552 233444444 67999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 99999999999998 66766665432 57999999999999753
No 89
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.3e-25 Score=150.65 Aligned_cols=120 Identities=23% Similarity=0.395 Sum_probs=93.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 80 (139)
...+||+++|++|||||||+++|++. .+...+.++..+.+...+.+++..+.+.+||++|++. ++.+...+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45799999999999999999999963 3444433333333456677889889999999999876 56677888899999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF 124 (139)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~ 124 (139)
+++|||++++++|+.+ ..|...+.+.. ++.|+++|+||+|+..
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 9999999999999998 77887776542 5799999999999864
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=3.7e-26 Score=151.64 Aligned_cols=116 Identities=18% Similarity=0.276 Sum_probs=94.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
.+.+||+++|.+|||||||++++.++.+ ..+.++.+.. ...+..++ ..+.+||+||+++++..+..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999887 3444555433 23444554 679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
|||++++++++.+ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 9999999999998 6666665543 36899999999999965
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=1.7e-25 Score=146.41 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=95.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..+ ...+.+||+||++.++..+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999988753 44555432 3344444 4679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+...
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999998 5565555432 268999999999999754
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=4.9e-27 Score=156.42 Aligned_cols=119 Identities=24% Similarity=0.354 Sum_probs=89.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeeeee-EEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFS-ANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 79 (139)
.+||+++|++|||||||+++|.+. .+...+.++.+..+. ..+.. ++..+.+.+||++|+++++.+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 455555666655442 22222 235678999999999999999999999999
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 80 VFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++++|||++++ +++..+ ..|+..+....++.|+++||||+|+...
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 99999999987 589888 8899988877778999999999998643
No 93
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=2.2e-26 Score=156.68 Aligned_cols=121 Identities=28% Similarity=0.464 Sum_probs=100.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEE-CCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 81 (139)
...+||+++|.+|||||||+++++++.+...+.++.+..+.. .... ++..+.+.+||++|++.+...+..+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 457999999999999999999999988877666666554432 3332 34448899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 999999999999998 78988887765 45999999999998754
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=3.5e-26 Score=151.97 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=94.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|++|||||||++++.++.+. .+.++.+.. ...+..+ ...+.+||+||++.++..+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999999987643 234444422 3344455 4679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~ 126 (139)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+....
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 9999999999998 6666655432 2689999999999997543
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=2.7e-26 Score=153.89 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=90.4
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
..+.+||+++|++|||||||++++..+.+.. +.++.+.. ...+..+ .+.+.+||+||+++++..+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3567999999999999999999999887753 34444421 2233333 467999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
+|||++++++++.+ ..|+..+... .++.|+++|+||+|+...
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 99999999999998 6676666442 268999999999999754
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=6.6e-26 Score=152.29 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=90.0
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCcccccccc---cccccC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYRG 77 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~ 77 (139)
+++.+||+++|.+|||||||++++.+ .+............ ...... ++..+.+++||++|+++|.... ..++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 35679999999999999999997666 34333222222111 222233 3566789999999999988776 789999
Q ss_pred ccEEEEEEeCCCH--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+|++++|||++++ +++..+ ..|+..+....++.|+++||||+|+..
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 9999999999997 777777 677777766678999999999999743
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=1.5e-25 Score=152.19 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=94.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ 80 (139)
..+.+||+++|++|||||||+++|+++.+...+.++...... +..++. .+.+.+|||||+++++. ++..+++++|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356799999999999999999999999887766544433222 455543 57899999999999988 78888999999
Q ss_pred EEEEEeCCCHH-HHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccC
Q 032516 81 FILAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~~~~ 126 (139)
+++|||+++.. ++....+.|...+... .++.|+++|+||+|+....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 99999999854 5666656676666542 3579999999999997654
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=8.5e-26 Score=149.59 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=92.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|++|||||||++++..+.+ ..+.++.+.. ...+..++ ..+.+||+||++.++..+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 3444555432 33444444 679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
|||++++++++.+ ..|+..+... ..+.|+++|+||+|+...
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 9999999999998 6677666554 378999999999998643
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.93 E-value=1.3e-25 Score=149.71 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=94.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
++.+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..+ ...+.+|||||+++++..+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999999887653 34554422 3344444 4679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+...
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 9999999999998 5566555433 268999999999999754
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=4.1e-25 Score=158.14 Aligned_cols=117 Identities=24% Similarity=0.365 Sum_probs=93.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~ 76 (139)
..+||+++|.+|||||||+++++++. +.. .+.+|.+..+. .+..++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 46899999999999999999999873 222 33445444433 333444 578999999999988 778888999
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHH---HhhhCCCCCEEEEeecCCccc
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPE---LRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~---l~~~~~~~~vivv~nK~D~~~ 124 (139)
++|++++|||++++++++.+ +.|... +....+++|+++|+||+|+..
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 99999999999999999998 666544 444567899999999999975
No 101
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=4.5e-24 Score=143.63 Aligned_cols=121 Identities=37% Similarity=0.644 Sum_probs=102.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+|++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.++.....+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3579999999999999999999999988777777765554 556778898899999999999999988888999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||+++..+++.+ ..|+..+.... .+.|+++++||+|+...
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 99999999999988 77888776654 57899999999999753
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=1.4e-23 Score=140.57 Aligned_cols=121 Identities=36% Similarity=0.617 Sum_probs=105.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
...+|++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++++......+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3468999999999999999999999988877778776665 567778898889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
+|||+++..+++.+ ..|+..+.... .+.|+++++||+|+...
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 99999999999888 77888776643 57899999999999753
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=4.2e-25 Score=158.44 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=85.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---cccccccCccEE
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ 81 (139)
||+++|++|||||||++++.++-+.. ...+|.+..+.. ++ ..+++++|||+||++|+. .++.|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 79999999999999999877653322 234555555432 22 347899999999999974 468899999999
Q ss_pred EEEEeCCCH--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 82 ILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|+|||++++ +.+..+ ..|+..+.+..+++|++++|||+|+..
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 999999987 344444 445666666678999999999999964
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.2e-25 Score=158.23 Aligned_cols=118 Identities=17% Similarity=0.246 Sum_probs=89.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 84 (139)
+.+||+++|.+|||||||+++|..+.+... .+|.+..+ ..+. ...+.+.+|||||++.+..++..+++.+|++++|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~-~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE-EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE-EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 467999999999999999999998886533 23333222 2233 3446799999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
||+++++++..+...|...+.... +++|+++|+||+|+....
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 999999999998555555555432 689999999999997543
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.5e-23 Score=138.00 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=89.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
++.+||+++|.+|+|||||++++.++.+...+.++..... ...+..++. .+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4679999999999999999999999888766655554333 345556664 4789999999999999999999999999
Q ss_pred EEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 83 LAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+|||++++ ++++.+ ..+.. .+.|+++|+||+|+...
T Consensus 84 ~v~d~~~~~~~~~~~~l-----~~~~~--~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI-----NHAKA--ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEETTCCCCHHHHHHH-----HHHGG--GSCCEEEEEETTTSSCS
T ss_pred EEEECCCCCcHHHHHHH-----HHHHh--CCCCEEEEEECccCCcC
Confidence 99999884 444333 22222 47999999999999754
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=4.2e-23 Score=155.97 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=94.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 83 (139)
...+||+++|.+|||||||++++..+.+.. +.+|.+..+. .+ +...+.+.+|||+|++.++..+..+++++|++++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EE--ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EE--EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 356999999999999999999999988653 3455544332 23 3344679999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~ 125 (139)
|||+++++++..+ ..|+..+.+. ..++|+++|+||+|+...
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9999999999999 5555555332 268999999999999643
No 107
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.5e-24 Score=141.77 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=86.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 77 (139)
...++|+++|++|||||||++++.+..+... ..++.. .+.....+.+||+||++.++..+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4568999999999999999999999876441 112211 11234568999999999998888878766
Q ss_pred -ccEEEEEEeCC-CHHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccccCc
Q 032516 78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~-----~~~~~vivv~nK~D~~~~~~ 127 (139)
+|++++|||++ +.+++..+ ..|+..+... .++.|+++|+||+|+.....
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 89999988 5555554332 25899999999999976543
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=150.27 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=90.3
Q ss_pred cceeEEEEECCC---------CCCHHHHHHHHHh---CCCCCCCCCce-eeeee-EE--------------EEECCeEEE
Q 032516 4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDNFS-AN--------------VVVDGSTVN 55 (139)
Q Consensus 4 ~~~~ki~iiG~~---------~~GKssl~~~~~~---~~~~~~~~~~~-~~~~~-~~--------------~~~~~~~~~ 55 (139)
...+||+++|.+ |||||||+++|++ +.+...+.+++ +..+. .. ...++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 457999999999 9999999999999 55666666654 22221 11 114567788
Q ss_pred EEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEeCCCH-
Q 032516 56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK- 90 (139)
Q Consensus 56 ~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 90 (139)
+++|| ++|+++++.++..+++ ++|++++|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999998
Q ss_pred -HHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516 91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF 124 (139)
Q Consensus 91 -~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~ 124 (139)
++++.+ ..|+..+.+. .+++|+++|+||+|+..
T Consensus 177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 999998 7888888664 26899999999999863
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=8e-24 Score=143.98 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=90.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 77 (139)
.+.+||+++|++|+|||||++++.+..+.. .+.++....+ ....+.+||+||++.++..+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 457899999999999999999999987654 2333333222 34569999999999999888888877
Q ss_pred -ccEEEEEEeCC-CHHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccccCc
Q 032516 78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~-----~~~~~vivv~nK~D~~~~~~ 127 (139)
++++++|||++ +++++... ..|+..+... .+++|+++|+||+|+...++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 88899888 5555555432 36899999999999976543
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.89 E-value=3.7e-23 Score=157.58 Aligned_cols=122 Identities=22% Similarity=0.290 Sum_probs=91.8
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEE---------EECCeEEEEEEEeCCCccccccccc
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLRP 72 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~D~~g~~~~~~~~~ 72 (139)
.+.+.+||+++|.+|||||||++++.+..+...+.++.+..+.... ..++....+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456799999999999999999999999988777777766553321 1133457899999999999999999
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
.+++.++++++|||+++. +.. ..|+..+....++.|+++|+||+|+...+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC
T ss_pred HHccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCcccccc
Confidence 999999999999998765 444 778999988888899999999999975443
No 111
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=4.1e-22 Score=130.41 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=81.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~- 76 (139)
+.+||+++|++|+|||||++++.+..+...+.++.... ....+..++ ..+.+|||||++.+.. +...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 35899999999999999999999876644433433222 233444554 5799999999988753 3355664
Q ss_pred -CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 77 -GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+++++++|+|+++.+. . ..|+..+.+ .+.|+++|+||+|+...
T Consensus 80 ~~~~~~i~v~D~~~~~~---~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---N-LYLTLQLME--MGANLLLALNKMDLAKS 123 (165)
T ss_dssp HCCSEEEEEEETTCHHH---H-HHHHHHHHH--TTCCEEEEEECHHHHHH
T ss_pred CCCCEEEEEecCCchhH---h-HHHHHHHHh--cCCCEEEEEEchHhccc
Confidence 8999999999987543 3 446666665 47999999999998744
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=6.3e-22 Score=128.21 Aligned_cols=114 Identities=24% Similarity=0.205 Sum_probs=78.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------cccccccccC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 77 (139)
.||+++|++|+|||||++++.+..+.. .+..+........+..++. .+.+||+||++.+ ......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999987532 2222222233444555554 6899999999873 3345567899
Q ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 124 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE 124 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch
Confidence 999999999987533322 233334443 468999999999997653
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=9.2e-23 Score=136.27 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=81.0
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCC----------ccccccc
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRL 70 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 70 (139)
+....+||+++|.+|+|||||++++++..+...+.++.+.... .....+. .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 3456799999999999999999999998766555554443332 2223343 489999999 6777777
Q ss_pred ccccccCc---cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 71 RPLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
...+++.+ |++++|+|++++.++... .+...+.. .+.|+++|+||+|+...+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChH
Confidence 77777666 999999999988777654 23344443 578999999999997544
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=3.8e-22 Score=131.56 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=85.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPL 73 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 73 (139)
.+..||+++|.+|+|||||++++.+..+. ..+..+........+..++. .+.+|||||++++... ...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 34689999999999999999999987642 22222222333455666664 4899999998764321 113
Q ss_pred cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~ 124 (139)
+++++|++++|||++++.+++. ..|+..+.+.. .++|+++|+||+|+..
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 5789999999999999888763 46777776554 5799999999999964
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=4.8e-22 Score=136.36 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=82.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcc------c----cccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE------D----YNRLRP 72 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~------~----~~~~~~ 72 (139)
.+.+||+++|.+|||||||++++++..+.....+.. ..........++ ..+.+|||||+. . +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 467999999999999999999999987642222211 111122222333 579999999993 2 221 22
Q ss_pred ccccCccEEEEEEeCCCHHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 73 LSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+...+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 346788999999999998876521 246777776655689999999999997543
No 116
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=8.8e-22 Score=140.55 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=84.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY 75 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 75 (139)
+..+|+++|.+|+|||||+|++++.++... ..+.+.......+ ......++.+|||||+.+ +......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i-~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI-LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE-EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE-EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 567899999999999999999999876432 2221111111111 222346799999999876 344556678
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+.+|++++|+|++++.+... +.+++.+++..++.|+++|+||+|+...+
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 99999999999987644332 44556676655689999999999997543
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=1.4e-21 Score=129.74 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=84.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccc------ccccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSY 75 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~ 75 (139)
+.+.+||+++|++|||||||++++.+..+...+.++.... ....+..++ ..+.+|||||++.+. .+...++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 4567999999999999999999999876543333333222 233444554 679999999998875 3345555
Q ss_pred c--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 76 R--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 76 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+ .++++++|+|.++ ++.. ..|+..+.. .+.|+++|+||+|+....
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~ 128 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSL 128 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHT
T ss_pred hccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhccccc
Confidence 4 5899999999875 4555 567777665 578999999999997543
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.86 E-value=2.1e-22 Score=133.85 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=85.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------cccccccccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~ 75 (139)
+||+++|++|||||||++++.+..+...+.++.... ......+ .+.+||||| ++.++.....++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999988876655544322 2222333 589999999 667777777788
Q ss_pred cC-ccEEEEEEeCCCHHHHHHHHHHHHHH--------H-hhh-CCCCCEEEEeecCCcccc
Q 032516 76 RG-ADVFILAFSLISKASYENVAKKWIPE--------L-RHY-APGVPIILVGTKLGKIFC 125 (139)
Q Consensus 76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------l-~~~-~~~~~vivv~nK~D~~~~ 125 (139)
+. +++++++|++.+.+++..+.+.|... + ... ..+.|+++|+||+|+...
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 77 88777788877788887765666542 1 111 257999999999999754
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=2.8e-21 Score=138.35 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeee-eEEEEECCeEEEEEEEeCCCccccc----------c
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN----------R 69 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~----------~ 69 (139)
+++..-.|+++|.+|||||||+|++++.++.... .+.+.... ......+ ...++.+|||||+.... .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4566789999999999999999999998765321 12111111 2222222 24679999999986554 4
Q ss_pred cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
....+++.+|++++|+|++++.+.... ..|++.++. .+.|+++|+||+|+.
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGS
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCC
Confidence 556678899999999999998888886 777888877 479999999999996
No 120
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=3.4e-21 Score=134.96 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=85.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR----- 76 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 76 (139)
.+.+||+++|.+|+|||||++++++..+. ..+.++...........++ ..+.+|||||++++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35799999999999999999999987752 2222222222333444454 47999999999988766555543
Q ss_pred ----CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CC--CCEEEEeecCCccccC
Q 032516 77 ----GADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLGKIFCD 126 (139)
Q Consensus 77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~--~~vivv~nK~D~~~~~ 126 (139)
++|++++|++++... +......|++.+.+.. ++ .|+++|+||+|+...+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 789999999987655 5444456777776643 22 4899999999986443
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=8.9e-21 Score=126.25 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=79.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCC----------cccccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g----------~~~~~~~~ 71 (139)
....+||+++|.+|+|||||++++++..+. ...++.+...... ...+. .+.+||||| ++.++...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 456789999999999999999999998743 2233333332222 22233 378999999 66677777
Q ss_pred cccccCc---cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 72 PLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 72 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+++.+ +++++|+|+++..+.... .+...+.. .+.|+++|+||+|+...+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS--LNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEEChhcCChH
Confidence 7777655 999999998876433322 22333333 268999999999996443
No 122
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=2.6e-20 Score=130.31 Aligned_cols=116 Identities=18% Similarity=0.128 Sum_probs=82.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccccc------cccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY 75 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~ 75 (139)
+.+.+||+++|++|+|||||++++.+..+.....+..... ....+..++ ..+.+||+||+..+.... ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 4568999999999999999999999876543222322222 122333333 679999999998876532 4555
Q ss_pred --cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+|++++|+|+++.++.. +|...+.+ .+.|+++|+||+|+...+
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~----~~~~~l~~--~~~pvilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL----YLLLEILE--MEKKVILAMTAIDEAKKT 126 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH----HHHHHHHT--TTCCEEEEEECHHHHHHT
T ss_pred hhcCCCEEEEEeCCCchhhHH----HHHHHHHh--cCCCEEEEEECcCCCCcc
Confidence 5899999999999865432 35555554 479999999999997543
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.83 E-value=2.3e-20 Score=140.36 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=71.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 74 (139)
..+||+++|.+|+|||||+|++.+... ......++.......+..++ ..+.+|||||+.++.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 358999999999999999999998753 22222233333345555666 469999999987765433 346
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
++++|++++|+|++++.+++.+ +.+...+... .+.|+++|+||+|+....+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc
Confidence 8899999999999998877543 3333333333 3799999999999976554
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=4.9e-21 Score=130.46 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=81.0
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCc----------cccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQ----------EDYNRL 70 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~ 70 (139)
+...+||+++|.+|+|||||++++++..+........+... ....... .....+.+|||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 45678999999999999999999998863222122221111 1122233 33456999999994 344555
Q ss_pred ccccccC---ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 71 RPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
...+++. +|++++|+|++++.+. ....|+..+.. .+.|+++|+||+|+...+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG--GCCCEEEEEECGGGSCHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh--cCCCEEEEEeccccCChh
Confidence 5556655 7889999999875332 22456666666 578999999999997543
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=1.7e-20 Score=131.10 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=81.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY 75 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 75 (139)
.||+++|.+|+|||||++++.+..+.....+.... .....+..++. .+.+|||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999987643333333322 22344555554 699999999987764 445566
Q ss_pred --cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+++|++++|+|+++.++...+ ...+.+ .+.|+++|+||+|+...+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHHHHT
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcCCcC
Confidence 899999999999986554443 334443 379999999999997554
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.82 E-value=3.6e-20 Score=130.62 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=80.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL----------RPL 73 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 73 (139)
++++|+++|.+|+|||||+|++.+..+.....+..... ....+..++ ..+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 46899999999999999999999876533333333222 233444444 35889999999887632 222
Q ss_pred cc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 74 SY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 74 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++ +.+|++++|+|+++.++... |...+.+. ++|+++|+||+|+...+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhh
Confidence 32 68999999999988655443 44444443 69999999999987543
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=2.9e-20 Score=130.99 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=80.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSYR-- 76 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 76 (139)
+.+||+++|++|||||||++++.+........+..... .....++. ...+.+||+||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 46899999999999999999999865332222322111 22223344 5579999999998876 34455665
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++|++++|+|+++.++. ..|...+.+ .+.|+++|+||+|+...
T Consensus 80 ~~d~vi~V~D~t~~e~~----~~~~~~l~~--~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 80 RADSILNVVDATNLERN----LYLTTQLIE--TGIPVTIALNMIDVLDG 122 (272)
T ss_dssp CCSEEEEEEEGGGHHHH----HHHHHHHHH--TCSCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCchHhH----HHHHHHHHh--cCCCEEEEEEChhhCCc
Confidence 69999999999876543 345555555 57999999999999744
No 128
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.82 E-value=3.4e-20 Score=130.35 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=81.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc-------c-
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------S- 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~- 74 (139)
..++|+++|.+|+|||||++++++..+... ..++.......... .....+.+|||||+.++...... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE--ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEe--eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 479999999999999999999998775322 12221111122233 33457999999999876543332 1
Q ss_pred -ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CC--CCEEEEeecCCccccC
Q 032516 75 -YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLGKIFCD 126 (139)
Q Consensus 75 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~--~~vivv~nK~D~~~~~ 126 (139)
.+.+|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2468999999998653 35544457777776543 22 6999999999986443
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1.8e-20 Score=139.69 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=84.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----------cccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP 72 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~ 72 (139)
..+||+++|.+|||||||++++++..+. ..+..++.......+..++. .+.+|||||+ +.|.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 5689999999999999999999987653 22233333333445556665 4899999998 33433332
Q ss_pred -ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
.+++.+|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+...++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch
Confidence 467889999999999998887775 47666665 5799999999999976543
No 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=125.68 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=75.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceee-eeeEEEEECCeEEEEEEEeCCCcc-----------cccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFD-NFSANVVVDGSTVNLGLWDTAGQE-----------DYNR 69 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~~ 69 (139)
...+||+++|.+|+|||||++++++..+.....+ +... ........++. .+.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999877544333 2222 22334445554 58999999943 3344
Q ss_pred cccccccCccEEEEEEeCCCHHH--HHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 70 LRPLSYRGADVFILAFSLISKAS--YENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
....+++++|++++|+|+++... ...+ +.+...+... ...|+++|+||+|+...+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC---
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCCcc
Confidence 44455678899999999875433 2222 3333322221 246999999999986543
No 131
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.81 E-value=1.2e-19 Score=139.45 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhC--CCCCC-----CCCce------eeee---eEEEEE---CCeEEEEEEEeC
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVPTV------FDNF---SANVVV---DGSTVNLGLWDT 61 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~-----~~~~~------~~~~---~~~~~~---~~~~~~~~i~D~ 61 (139)
|+.++..||+++|+.++|||||+++++.. .+... ...+. +... ...+.+ ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 55677899999999999999999999862 22111 11110 1111 112222 455688999999
Q ss_pred CCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
||+.+|......+++.+|++++|+|+++..+.+.. +.|..... .++|+++++||+|+...++
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~~ 142 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSADV 142 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCCH
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccCH
Confidence 99999998888899999999999999998887776 66766554 4789999999999986653
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=2.2e-19 Score=134.00 Aligned_cols=112 Identities=22% Similarity=0.218 Sum_probs=74.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY 75 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 75 (139)
.+|+++|.||||||||+|++++.... ....+.+. +.....+..++. .+.+|||||++.. +.....++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987642 12222222 223445555665 5899999997742 33456678
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+++|++++|+|++++.+... +.+...+++ .+.|+++|+||+|+..
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLR 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHH
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcc
Confidence 99999999999987644332 223333443 3689999999999864
No 133
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=5.1e-19 Score=123.47 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=74.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCc-ee-eeeeEEEEECCeEEEEEEEeCCCccccccccc---------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT-VF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------- 72 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------- 72 (139)
..++|+++|.+|+|||||++++++.. +.....++ .. .........++ ..+.+|||||+..+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999876 44333333 22 22233344444 4699999999876543322
Q ss_pred --ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEe-ecCCccc
Q 032516 73 --LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVG-TKLGKIF 124 (139)
Q Consensus 73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~-nK~D~~~ 124 (139)
.+++.+|++++|+|+++ +......+...+.+.. ...|.+++. ||+|+..
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 26788999999999986 2222222333333321 134555555 5999974
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=3e-20 Score=138.56 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=73.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR 76 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 76 (139)
..+|+++|.+|||||||++++.+..+... ..+.+... ............+.+|||||++ .++.....+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999998765321 11222111 1222233333569999999986 45566677889
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++|++++|+|++++.+... ..+...+++ .+.|+++|+||+|+...
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccc
Confidence 9999999999988766543 345555554 57899999999998754
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=3.6e-19 Score=125.16 Aligned_cols=113 Identities=19% Similarity=0.060 Sum_probs=80.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY-- 75 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 75 (139)
+.+||+++|++|+|||||++++.+..+.....++..... ...+..++. .+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998766433334333332 334445554 599999999988766 455555
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.++|++++|+|+++.+ .. ..|...+.+. ...|+++|+||+|+..
T Consensus 80 ~~~d~vi~v~D~~~~~---~~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RN-LFLTLELFEM-EVKNIILVLNKFDLLK 123 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HH-HHHHHHHHHT-TCCSEEEEEECHHHHH
T ss_pred cCCcEEEEEecCCcch---hh-HHHHHHHHhc-CCCCEEEEEEChhcCc
Confidence 6899999999998753 22 3344444442 2399999999999764
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.80 E-value=4e-19 Score=123.52 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=74.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeeEEEEECCeEEEEEEEeCCCc--------cccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAGQ--------EDYNRLRP 72 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~ 72 (139)
...+||+++|.+|+|||||+|++++........++. ..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 457999999999999999999999877543322221 111223334444 46899999996 33322222
Q ss_pred ccc----cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCccc
Q 032516 73 LSY----RGADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLGKIF 124 (139)
Q Consensus 73 ~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~~vivv~nK~D~~~ 124 (139)
..+ +++|++++|+|+++.. .....+++.+.+. ..+.|+++++||+|+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~---~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFT---AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCC---HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCC---HHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 223 8999999999997532 2223334444332 13689999999999964
No 137
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.79 E-value=3.4e-19 Score=128.62 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=61.4
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------CHHHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK 119 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK 119 (139)
..+++++||++||+.++..+..++++++++|+|||++ +.+++.+. ..|+..+... .+++|++|+|||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEEC
Confidence 4578999999999999999999999999999999998 77889888 5555555432 268999999999
Q ss_pred CCccc
Q 032516 120 LGKIF 124 (139)
Q Consensus 120 ~D~~~ 124 (139)
+|+..
T Consensus 238 ~DL~~ 242 (340)
T 4fid_A 238 MDLFE 242 (340)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 99874
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.79 E-value=1.1e-19 Score=134.77 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=81.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------cc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS 74 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~ 74 (139)
...+||+++|.+|+|||||+++++...+.. .+..++.......+...+. ..+.+|||||++++..... .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 457899999999999999999999877632 2222223333445555554 2699999999998776533 36
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
++.+|++++|+|++..+. ...|+..+++. +.|+++|+||+|+...+.
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH
Confidence 889999999999833322 25677777764 799999999999986554
No 139
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=9.1e-21 Score=143.98 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=86.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
++..+|+++|++++|||||+++|....+...+.+++.... ...+..+ ....+.+|||||++.|..+...+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3578999999999999999999997655444444433322 2222221 1235899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|+|+++....+.. +. +..+.. .++|+++++||+|+...+
T Consensus 81 LVVDa~dg~~~qt~-e~-l~~~~~--~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 81 LVVAADDGVMKQTV-ES-IQHAKD--AHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp EECBSSSCCCHHHH-HH-HHHHHT--TTCCEEECCBSGGGTTTS
T ss_pred EEEECCCCccHHHH-HH-HHHHHH--cCCcEEEEEecccccccc
Confidence 99999986655554 33 333333 468999999999997544
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.78 E-value=2.2e-19 Score=138.11 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=82.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCC-----CCCCc------eeeee---eEEEEE---CCeEEEEEEEeCCCc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPT-----DYVPT------VFDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-----~~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~g~ 64 (139)
++..||+++|+.++|||||+++++... +.. ....+ .+... ...+.+ ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 457899999999999999999998632 211 11111 11111 111222 455688999999999
Q ss_pred ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|......+++.+|++++|+|+++..+.+.. ..|..... .++|+++++||+|+...+
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~---~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEeeeccCccccc
Confidence 99999888999999999999999988777776 66666554 378999999999998655
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=3.8e-19 Score=133.28 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------cccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 71 (139)
...+||+++|.+|+|||||+++++.... ...+..++.......+..++. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999999999997642 222223333333455556665 689999999 66666655
Q ss_pred c-ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 72 P-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
. .+++.+|++++|+|++++.+- ....|...+.+ .+.|+++|+||+|+...+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~--~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE--QDKRIAGYAHE--AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH--TTCEEEEEEECGGGSCCC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH--HHHHHHHHHHH--cCCCEEEEEEChhcCCCc
Confidence 4 367899999999999875432 23556666665 579999999999997544
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=2.6e-18 Score=123.52 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=59.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------CHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTKL 120 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~ 120 (139)
.+++++||++||+.++..+..++++++++|+|||++ +.+++.+. ..|+..+... .++.|++|++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence 478999999999999999999999999999999665 66778877 5565555432 2689999999999
Q ss_pred Cccc
Q 032516 121 GKIF 124 (139)
Q Consensus 121 D~~~ 124 (139)
|+..
T Consensus 245 DL~~ 248 (327)
T 3ohm_A 245 DLLE 248 (327)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9974
No 143
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.77 E-value=4.5e-19 Score=128.91 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=61.5
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------CHHHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK 119 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK 119 (139)
..+++++||++||+.++..+..++++++++|+|||++ +.+++++. ..|+..+... .+++|++|+|||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 78899998 6677776543 378999999999
Q ss_pred CCccc
Q 032516 120 LGKIF 124 (139)
Q Consensus 120 ~D~~~ 124 (139)
+|+..
T Consensus 260 ~DL~~ 264 (354)
T 2xtz_A 260 FDIFE 264 (354)
T ss_dssp HHHHH
T ss_pred cchhh
Confidence 99864
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=1.5e-19 Score=135.43 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=76.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCC--------cccccccccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY 75 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~ 75 (139)
...+|+++|.+|||||||+|++.+..+... ..+.+... ............+.+||||| ++.++.....++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 457999999999999999999998765321 11122211 22233344445799999999 667777788889
Q ss_pred cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+++|++++|+|..+.-+ ...+.+.+.+++ .+.|+++|+||+|+....
T Consensus 101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp HHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC------
T ss_pred hhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh
Confidence 99999999999876332 332445555554 579999999999987543
No 145
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=2.6e-18 Score=122.55 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=78.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-ceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP 72 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 72 (139)
.+..+|+++|++|+|||||++++++..+... ..+ ++.......+..+ ..++.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 3556899999999999999999998765321 111 1111111122223 3579999999987 3444556
Q ss_pred ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.+++.+|++++|+|+++ +....+.+.+.+.. .+.|+++++||+|+..
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCC
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCc
Confidence 78899999999999976 33332334444443 4789999999999975
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=2.2e-19 Score=136.51 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=84.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCC-------------CCCCc-------eeee-eeEEEEECCeEEEEEEEeCC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-------------DYVPT-------VFDN-FSANVVVDGSTVNLGLWDTA 62 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-------------~~~~~-------~~~~-~~~~~~~~~~~~~~~i~D~~ 62 (139)
.+..+|+++|++|+|||||+++++...... ..... .+.. .............+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 356899999999999999999997211000 00000 0011 11122223334679999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
|+.+|......+++.+|++++|+|+++..+.+.. ..| ..+.. .++|+++++||+|+...+
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~--~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRL--RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHT--TTCCEEEEEECTTSCCSC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEeCCCCcccc
Confidence 9999999999999999999999999987776665 444 33443 478999999999997655
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.76 E-value=1.5e-18 Score=130.92 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=78.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC---------------------------CCceeeee-eEEEEECCeE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY---------------------------VPTVFDNF-SANVVVDGST 53 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~---------------------------~~~~~~~~-~~~~~~~~~~ 53 (139)
...+||+++|++++|||||+++++... +...+ ....+... .....++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 356999999999999999999998651 11000 00001111 1122233445
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+.+|||||+++|......+++.+|++++|+|++++.+... .....+..... ....|+++|+||+|+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence 679999999999999988899999999999999998754322 11222222222 23356999999999975
No 148
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=3.9e-19 Score=128.79 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=85.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----ccccccccccc---Cc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYR---GA 78 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~~ 78 (139)
.+|+++|.+|||||||++++.+.+.. ..+..++.......+..++. ..+.+||+||+. .+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999986532 12222222222223334431 368999999964 34445555655 48
Q ss_pred cEEEEEEeCCC---HHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516 79 DVFILAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 79 ~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~ 125 (139)
+++++|+|+++ +++++.+ +.|..++..+. .+.|+++|+||+|+...
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 99999999998 7889988 88999988765 47999999999999754
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.76 E-value=6.1e-18 Score=124.98 Aligned_cols=122 Identities=14% Similarity=0.007 Sum_probs=85.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-------eEEEE---------E---CCeEEEEEEEeCCC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------SANVV---------V---DGSTVNLGLWDTAG 63 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------~---~~~~~~~~i~D~~g 63 (139)
.+..+||+++|++++|||||++++.+............... ..... . ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45679999999999999999999987543221000000000 00000 0 11236799999999
Q ss_pred cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+++|.......++.+|++++|+|++++.++... ..++..+.... ..|+++|+||+|+...+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchH
Confidence 999999888899999999999999987656665 55666655542 35899999999997543
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=8.1e-19 Score=132.11 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=82.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~ 74 (139)
.++|+++|.+|+|||||+|++.+.++ ...+..++.+.....+..++. .+.+|||||+. ++... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998753 333333333344555666654 58999999987 65432 2356
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
++.+|++++|+|++++.+++.. + +++.+ .+.|+++|+||+|+..
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCC
T ss_pred hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECccccc
Confidence 7889999999999988777654 3 33333 4789999999999964
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=1.8e-18 Score=129.68 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=74.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 74 (139)
..+||+++|++|+|||||+|++++..+. .....++.+.....+..++. .+.+|||||..++... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999986432 22222222223445556664 5899999998665433 2336
Q ss_pred ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
++.+|++++|+|++++.+... ..|++.+. +.|+++|+||+|+...+.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL 347 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh
Confidence 788999999999998766554 44555554 379999999999975543
No 152
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=9.5e-18 Score=122.18 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=83.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPL 73 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 73 (139)
...++++++|.+|||||||++++.+........+ ++.......+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3568999999999999999999998764221111 1111112222233 35699999999865321 1112
Q ss_pred cccCccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 74 SYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
....+|++++|+|++++. +++.. ..|+..+....++.|+++|+||+|+...
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADE 295 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence 345689999999998887 67776 7788888776568999999999999743
No 153
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=1.3e-17 Score=121.28 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=61.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKL 120 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~ 120 (139)
.+.+++||++||+.++..|..++++++++|+|||+++ .+++.+. ..|+..+... .+++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 4779999999999999999999999999999999998 5678887 6677766543 3689999999999
Q ss_pred Ccc
Q 032516 121 GKI 123 (139)
Q Consensus 121 D~~ 123 (139)
|+.
T Consensus 271 DL~ 273 (353)
T 1cip_A 271 DLF 273 (353)
T ss_dssp HHH
T ss_pred Cch
Confidence 995
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=3.1e-17 Score=121.37 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=79.1
Q ss_pred CCcceeEEEEECCCCCCHHHHHHHHHhC---CCCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEEE
Q 032516 2 SASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNL 56 (139)
Q Consensus 2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~ 56 (139)
.....+||+++|+.++|||||++++.+. .+.....+ |....+.. .+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 3456799999999999999999999843 23222223 33222221 1111 1 1 13689
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEeCCC----HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 57 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.+|||||+++|.......+..+|++++|+|+++ +++.+.+ ..+ .. ....|+++++||+|+...+
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~-l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL----EI-LGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH----HH-TTCCCEEEEEECTTSSCTT
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH----HH-cCCCeEEEEEEccCCCCHH
Confidence 999999999988777777788999999999984 4555554 322 22 1235899999999997654
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.75 E-value=5.4e-18 Score=130.37 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=81.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeeEEE-------------EECCeEEEEEEEeCCCccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANV-------------VVDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~i~D~~g~~~ 66 (139)
.+..+|+++|++++|||||++++.+..+.... +.+.+..+...- ..+.....+++|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 45789999999999999999999875443221 112221111000 0001112589999999999
Q ss_pred ccccccccccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
|..+...+++.+|++++|+|+++ +++++.+ . .++. .++|+++++||+|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEeccccccc
Confidence 99999999999999999999998 6666655 3 2233 4789999999999964
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=2.2e-19 Score=133.81 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC-------------------------------CCceeeeeeEEE
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY-------------------------------VPTVFDNFSANV 47 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~ 47 (139)
|.....+||+++|++++|||||+++++.. .+.... ..|.... ..
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~---~~ 77 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT---FM 77 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------C
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee---EE
Confidence 55677899999999999999999999874 332111 0011111 11
Q ss_pred EECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-----CC-CCEEEEeecCC
Q 032516 48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PG-VPIILVGTKLG 121 (139)
Q Consensus 48 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~-~~vivv~nK~D 121 (139)
.++.....+.+|||||+++|......+++.+|++++|+|+++ .+|+.. ..|....+++. .+ .++++++||+|
T Consensus 78 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~D 155 (435)
T 1jny_A 78 RFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMD 155 (435)
T ss_dssp EEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred EEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEccc
Confidence 223344679999999999999888889999999999999998 667654 22222221110 23 46999999999
Q ss_pred ccc
Q 032516 122 KIF 124 (139)
Q Consensus 122 ~~~ 124 (139)
+..
T Consensus 156 l~~ 158 (435)
T 1jny_A 156 LTE 158 (435)
T ss_dssp GSS
T ss_pred CCC
Confidence 976
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.74 E-value=5e-19 Score=133.53 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=82.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 82 (139)
++..+|+++|++++|||||++++....+...+.+.+.... ...+..++ ..+.+|||||++.|..+....++.+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987654433222221111 11222233 35899999999999999999999999999
Q ss_pred EEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 83 LAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|+|+++. ++.+.+ ..+.. .++|+++++||+|+...+
T Consensus 80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~ 119 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEAD 119 (501)
T ss_dssp EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTC
T ss_pred EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccC
Confidence 99999874 333332 22222 478999999999997544
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=3.1e-18 Score=120.60 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC-CCCCC-------CCceeeee-eEEEEECCeEEEEEEEeCCCcccc-------
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY------- 67 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~------- 67 (139)
...++|+++|.+|+|||||+|+++... +...+ .++.+... ...+..++..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 356999999999999999999977644 33333 33333332 333434555678999999997322
Q ss_pred cccc-------ccccc-------------CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 68 NRLR-------PLSYR-------------GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 68 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+. ..+++ .+|+++++++.+.. .+......+++.+.. +.|+++|+||+|+..
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCC
Confidence 2221 22222 36788888876542 223333455666654 799999999999863
No 159
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=5.3e-18 Score=129.00 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=81.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCCC--------CCC----------ceeeee-eEEEEECCeEEEEEEEeCC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVP----------TVFDNF-SANVVVDGSTVNLGLWDTA 62 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~--------~~~----------~~~~~~-~~~~~~~~~~~~~~i~D~~ 62 (139)
.+..||+++|++|+|||||+++++... +... ... ..+... ............+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 357899999999999999999999632 1000 000 001111 0112223334679999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
|+++|......+++.+|++++|+|+++...... ..++..... .++|+++++||+|+...++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCSCH
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccccH
Confidence 999999888889999999999999987643222 333333333 4789999999999986654
No 160
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=2.1e-17 Score=123.34 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=77.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC-----------------------------CCceeeeeeEEEEECCe
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY-----------------------------VPTVFDNFSANVVVDGS 52 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 52 (139)
...++|+++|++++|||||+++++... +.... .+.+.... ....+...
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~-~~~~~~~~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEV-GRAYFETE 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEE-eEEEEecC
Confidence 457999999999999999999996532 11100 01111111 11122333
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHH---HH---HHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
...+.+|||||+++|.......++.+|++++|+|+++... |+ .. ...+..+.. .++| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4579999999999999888888999999999999987532 11 11 122222222 3566 999999999853
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.73 E-value=3.3e-17 Score=119.64 Aligned_cols=115 Identities=23% Similarity=0.215 Sum_probs=79.2
Q ss_pred eE-EEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 032516 7 IK-CVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY 75 (139)
Q Consensus 7 ~k-i~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 75 (139)
++ ++++|++|+|||||++++.+..+.... ..++-+.....+.+++. .+.+|||+|.-. ++.... .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 45 999999999999999999987653221 12222233456666764 589999999622 222222 46
Q ss_pred cCccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516 76 RGADVFILAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~ 125 (139)
..+|.+++|+|++++. ....+ +.|.+.+.... .+.|+++|+||+|+...
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 8899999999998876 55555 66766666654 67899999999999653
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=6e-18 Score=125.06 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=82.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhC--------CCCCCC--C-----Cceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTDY--V-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--------~~~~~~--~-----~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 66 (139)
....+||+++|++++|||||++++... .+.... . ...+... .....++.....+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356799999999999999999999873 221100 0 0111111 12233444446799999999999
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
|......+++.+|++++|+|+++....+. ..++..+.. .++| +++++||+|+..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~--~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH--TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEECccccC
Confidence 98888888999999999999988654333 445555554 3678 899999999974
No 163
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=125.77 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=67.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC-CCCCCCC--------Cceeeee-eEEEEECCeEEEEEEEeCCCc-------ccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~ 67 (139)
..++|+++|++|+|||||+++++.. .+...+. ++.+... ...+..++....+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3589999999999999999997654 3333222 2332222 222334566678999999999 666
Q ss_pred ccccc-------ccccCccE-----------EEEEEeCCC-HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 68 NRLRP-------LSYRGADV-----------FILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 68 ~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
..+.. .+++.+++ .+++|++++ ..++..+...|+..+ ..++|+++|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCH
Confidence 66665 55544333 246666554 566666644555554 367999999999998643
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.73 E-value=2.5e-18 Score=129.14 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=67.3
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh--CCCCCC-------------------------------CCCceeeeeeEEEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD-------------------------------YVPTVFDNFSANVVV 49 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~ 49 (139)
....+||+++|+.++|||||+++++. +.+... ...|+...+ ..+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEec
Confidence 35578999999999999999999975 222100 000111100 11222
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHHHHHHHHHHHHhhh-CCCCC-EEEEeecCCccc
Q 032516 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENVAKKWIPELRHY-APGVP-IILVGTKLGKIF 124 (139)
Q Consensus 50 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~l~~~-~~~~~-vivv~nK~D~~~ 124 (139)
+ ...+.+|||||+++|.......++.+|++|+|+|+++.. +|+.. ..+...+... ..++| +++++||+|+..
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~-~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG-GQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTT-CCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCC-CcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 2 357999999999999988888899999999999998863 33211 1222222111 14677 999999999964
No 165
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.73 E-value=1.2e-17 Score=132.94 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=86.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCC--CCC------CC--------C--Cceeeee-eEEEE------------ECC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------DY--------V--PTVFDNF-SANVV------------VDG 51 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~------~~--------~--~~~~~~~-~~~~~------------~~~ 51 (139)
+.+..||+++|++++|||||+++++... ... .. . .|+.... ..... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641 110 00 0 0111111 11111 133
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
....+++|||||+.+|......+++.+|++++|+|+++..+++.. ..|..... .++|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 478899999999999999999999999999999999998888776 55654433 4789999999999974
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.72 E-value=1.4e-17 Score=118.00 Aligned_cols=119 Identities=22% Similarity=0.221 Sum_probs=77.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC------Ccee--------------------eee---------------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVF--------------------DNF--------------- 43 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~~--------------------~~~--------------- 43 (139)
...+|+++|.+|+|||||++++++..+.+... ++.. ...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999988743221 2100 000
Q ss_pred ---------eEEEEE-CCeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEeCCCHHHHHHHHHH
Q 032516 44 ---------SANVVV-DGSTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISKASYENVAKK 99 (139)
Q Consensus 44 ---------~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 99 (139)
...+.. ......+.+|||||.. .+..+...+++.++.++ +|+|+++..+..+. ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 000000 0112569999999964 23445667788888776 68899875444433 34
Q ss_pred HHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 100 WIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 100 ~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+...+.. .+.|+++|+||+|+...+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCC
Confidence 5555544 478999999999997543
No 167
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=2.5e-17 Score=122.84 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=76.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 71 (139)
..+|++++|++|||||||++++++... ......++.......+..++. .+.+|||+|+.+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998764 222222322233445666775 47899999985433221
Q ss_pred -cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+++.+|++++++|+++..+.... .+...+.. .+.|+++|+||+|+...+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCch
Confidence 2346678999999999876655442 34444444 578999999999997544
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.72 E-value=1.4e-17 Score=122.91 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=79.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC-------CCCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCcccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD--YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~-------~~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~ 69 (139)
..+||+++|++++|||||++++... .+... ... ..+... .....++.....+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999873 11110 000 000010 11122334446799999999999988
Q ss_pred cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
....+++.+|++++|+|+++....+.. +.| ..++. .++| +++++||+|+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~--~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQ--IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHH--TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHH--cCCCeEEEEEECcccCC
Confidence 778889999999999999886443332 333 34443 3678 789999999974
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=2.5e-17 Score=123.50 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=79.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCC-------------------------------CCCceeeeeeEEEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-------------------------------YVPTVFDNFSANVVV 49 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~ 49 (139)
....++|+++|++++|||||+++++.. .+... ...+....+ . .+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~--~~ 80 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-W--KF 80 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-E--EE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-E--EE
Confidence 346799999999999999999999864 22110 001111111 1 22
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCc
Q 032516 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKLGK 122 (139)
Q Consensus 50 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~~-vivv~nK~D~ 122 (139)
+.....+.+|||||+++|......+++.+|++++|+|+++.. +|+ .. ...+..+.. .++| +++++||+|+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~--~~v~~iivviNK~Dl 157 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFT--LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHH--cCCCeEEEEEEcccc
Confidence 334467999999999999888888899999999999998763 231 22 222223333 3565 9999999999
Q ss_pred cc
Q 032516 123 IF 124 (139)
Q Consensus 123 ~~ 124 (139)
..
T Consensus 158 ~~ 159 (458)
T 1f60_A 158 VK 159 (458)
T ss_dssp GT
T ss_pred cc
Confidence 73
No 170
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.72 E-value=1.6e-17 Score=129.77 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=84.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC--CCCC------------------CCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 63 (139)
.+..||+++|++|+|||||+++++.. .+.. .+..++... ...+..+ ...+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcC
Confidence 56899999999999999999999842 2110 000111110 1122223 46799999999
Q ss_pred cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+.+|......+++.+|++++|+|+++..+.+.. ..|.. +.. .++|+++++||+|+...+
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccCC
Confidence 999998889999999999999999988777765 55554 333 479999999999998655
No 171
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=8.5e-17 Score=119.89 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=78.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC----------CCceeeee--------------------eEEEEECC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTVFDNF--------------------SANVVVDG 51 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~----------~~~~~~~~--------------------~~~~~~~~ 51 (139)
...+||+++|++++|||||+++++... +.... .++.+..+ ........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998653 11100 01110000 00111233
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
....+.+|||||+++|......+++.+|++++|+|+++....+. ..++..+... .-.|+++|+||+|+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTS
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcc
Confidence 34679999999999998888888999999999999988643322 2333444332 22369999999999753
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.71 E-value=1.1e-16 Score=118.56 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=79.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG 57 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 57 (139)
....++|+++|+.++|||||++++.+.. +.....+ |....+.. .+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998532 2222222 33222221 1111 0 1 136799
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCC----HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|||||+++|.......+..+|++++|+|+++ +++.+.+ ..+ ... ...|+++++||+|+...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~~-~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL----QII-GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH----HHH-TCCCEEEEEECGGGSCHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH----HHc-CCCcEEEEEECccCCCHH
Confidence 99999999988776677788899999999985 4455554 322 222 235899999999997543
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=2e-17 Score=129.28 Aligned_cols=118 Identities=15% Similarity=0.074 Sum_probs=84.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh--CCCCCCC---C-Cce----------eee---eeEEEEECCeEEEEEEEeCCC
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY---V-PTV----------FDN---FSANVVVDGSTVNLGLWDTAG 63 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~---~-~~~----------~~~---~~~~~~~~~~~~~~~i~D~~g 63 (139)
..+..+|+++|++|+|||||+++++. +.+.... . .+. +.. ....+..+ ...+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 45678999999999999999999985 3221100 0 000 000 01122233 36799999999
Q ss_pred cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+.+|......+++.+|++++|+|+++..+.+.. ..|.. +.. .+.|+++++||+|+...+
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~--~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTCC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEECCCccccc
Confidence 999988888899999999999999988777665 54543 444 479999999999997654
No 174
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=7.2e-17 Score=121.66 Aligned_cols=111 Identities=22% Similarity=0.176 Sum_probs=78.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC----C---CCCCCC--ceeeeeeEEEEECCeEEEEEEEeCCCccccccccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT----F---PTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~----~---~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 74 (139)
.+.++|+++|+.++|||||++++.+.. . .....+ |....+ ..+..++ ..+.+|||||+++|.......
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~-~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF-SAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC-CEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce-EEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 457999999999999999999999765 1 111111 111111 1233344 579999999999998888888
Q ss_pred ccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 75 YRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 75 ~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+..+|++++|+|+++ +++.+.+ . .++. .++|.++++||+|+..
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l-~----~~~~--~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM-L----ILDH--FNIPIIVVITKSDNAG 139 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH-H----HHHH--TTCCBCEEEECTTSSC
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH-H----HHHH--cCCCEEEEEECCCccc
Confidence 999999999999987 4555544 2 2233 3688899999999974
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=6.1e-17 Score=126.78 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=84.5
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC------------------CCceeeeeeEEEEEC-----CeEEEEE
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------VPTVFDNFSANVVVD-----GSTVNLG 57 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~ 57 (139)
.++..||+++|+.++|||||+++++.. .+.... ..++... ...+..+ +..+.++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEE
Confidence 356789999999999999999999853 221100 0011000 1112222 2347899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
+|||||+.+|......+++.+|++++|+|+++....+.. ..|.. ... .++|+++++||+|+...+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCccccc
Confidence 999999999998888999999999999999987666554 44433 333 479999999999998655
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=2.7e-17 Score=117.47 Aligned_cols=121 Identities=20% Similarity=0.161 Sum_probs=75.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceee----eeeE----------------------------------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFD----NFSA---------------------------------- 45 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~----~~~~---------------------------------- 45 (139)
...+|+++|.+|+|||||++++++..+.+.... .... ....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457899999999999999999999876332210 0000 0000
Q ss_pred -----E--------------EE-ECCeEEEEEEEeCCCccc-------------ccccccccccCccEEEEEEeCCCHHH
Q 032516 46 -----N--------------VV-VDGSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKAS 92 (139)
Q Consensus 46 -----~--------------~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s 92 (139)
. +. .......+.+|||||... +......+++.+|++++|+|.++...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 00 111124699999999753 34455667889999999999743321
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 93 YENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
...-...+...+.. .+.|+++|+||+|+...+.
T Consensus 183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC
T ss_pred hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch
Confidence 11110234444443 4789999999999975443
No 177
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.69 E-value=1.6e-17 Score=126.84 Aligned_cols=117 Identities=19% Similarity=0.164 Sum_probs=80.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeeEEEEECCe-----------------------------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANVVVDGS----------------------------- 52 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------------------------- 52 (139)
...+|+++|.+|+|||||+|++++..+. ....+++.. . ..+..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~-~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F-VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E-EEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E-EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 5689999999999999999999998763 122222211 0 00000000
Q ss_pred --E---------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCC
Q 032516 53 --T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG 110 (139)
Q Consensus 53 --~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~ 110 (139)
. ..+.+|||||... +......+++.+|++++|+|+++....... ..|+..++. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cC
Confidence 0 2589999999865 334555677889999999999875444444 567776665 35
Q ss_pred CCEEEEeecCCccccC
Q 032516 111 VPIILVGTKLGKIFCD 126 (139)
Q Consensus 111 ~~vivv~nK~D~~~~~ 126 (139)
.|+++|+||+|+...+
T Consensus 219 ~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGEEEEEECGGGSCHH
T ss_pred CCEEEEEECCCccCHH
Confidence 7899999999997543
No 178
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-16 Score=122.06 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------------------------------Cceeee-eeEEEEECC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-------------------------------PTVFDN-FSANVVVDG 51 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~~~~ 51 (139)
...+||+++|++++|||||+++++.....-... +.+... ....+ ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence 457899999999999999999998753211100 000000 01122 23
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
....+.+|||||+++|......+++.+|++++|+|++++.. + ... ...+..+.. ....++++|+||+|+..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~-lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASS-LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHT-TTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHH-cCCCeEEEEEecccccc
Confidence 34579999999999999888889999999999999987431 1 111 112222222 12245999999999975
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.66 E-value=1.9e-16 Score=115.35 Aligned_cols=118 Identities=20% Similarity=0.160 Sum_probs=77.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---ee--------------------------------------
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN---FS-------------------------------------- 44 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~---~~-------------------------------------- 44 (139)
...|+++|++|||||||++++.+..+.+......... ..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999988754433221100 00
Q ss_pred ------------EEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEeCCCHHHHHHHHH
Q 032516 45 ------------ANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVAK 98 (139)
Q Consensus 45 ------------~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (139)
..+.+ ......+.+|||||...+ ..+...+++++|++++++|..+..... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence 00000 111235899999998876 455667889999999999875443322 2
Q ss_pred HHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516 99 KWIPELRHYA-PGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 99 ~~~~~l~~~~-~~~~vivv~nK~D~~~~~ 126 (139)
.|+..++... .+.|+++|+||+|+...+
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 2344444333 468999999999997543
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.66 E-value=2.6e-16 Score=123.09 Aligned_cols=118 Identities=10% Similarity=0.135 Sum_probs=82.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceee----e----eeEEEEE--------------------------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFD----N----FSANVVV-------------------------- 49 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~----~----~~~~~~~-------------------------- 49 (139)
..++|+++|.+|+|||||+|++++..+.+. ..+++.. . ...+...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998765432 2222210 0 0001111
Q ss_pred --------------------CCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHH
Q 032516 50 --------------------DGST--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL 104 (139)
Q Consensus 50 --------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l 104 (139)
.... ..+.+|||||... .......+++++|++++|+|++++.+..+. +.|.+.+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0000 2489999999654 334556788999999999999988777776 6666665
Q ss_pred hhhCCCCCEEEEeecCCcccc
Q 032516 105 RHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 105 ~~~~~~~~vivv~nK~D~~~~ 125 (139)
.. .+.|+++|+||+|+...
T Consensus 227 ~~--~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 KG--RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TT--SCCCEEEEEECGGGGGG
T ss_pred Hh--hCCCEEEEEECcccccc
Confidence 54 36789999999998644
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.65 E-value=2.7e-17 Score=126.60 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=62.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCC--CCCC-----------------------------CCCceeeeeeEEEEECCe
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD-----------------------------YVPTVFDNFSANVVVDGS 52 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 52 (139)
...+||+++|++++|||||+++|+... +... ..+.+.... ....+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~-~~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDV-ASTTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEe-eEEEEEeC
Confidence 457899999999999999999997421 1000 000000000 01112223
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HH--HHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
...+.+|||||+++|.......++.+|++|+|+|++++. .+ .......+..+.. .++| +++|+||+|+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEecccccc
Confidence 467999999999999988888999999999999998532 11 1100112222222 2455 999999999975
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=4.6e-16 Score=104.86 Aligned_cols=116 Identities=14% Similarity=0.075 Sum_probs=69.9
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED----------YNRLR 71 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 71 (139)
.....+++++|++|+|||||++++.+..+.....++.+... ......++ .+.+||+||+.. ++...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999988764433334433332 12222333 478999999743 22222
Q ss_pred cccc---cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 72 PLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
..++ +.++++++++|++++.+... +.....+.. .+.|+++++||+|+...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~--~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD--SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSCH
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEecccCCCc
Confidence 2333 56899999999987654432 122223333 46899999999998643
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=1.6e-15 Score=111.82 Aligned_cols=84 Identities=21% Similarity=0.195 Sum_probs=47.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce-eeeeeE-EE-------------------EECC-eEEEEEEEeCCC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSA-NV-------------------VVDG-STVNLGLWDTAG 63 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g 63 (139)
+||+++|.+|||||||+|++.+..... .+..++ ...... .. .+++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876321 211111 111110 11 1122 247899999999
Q ss_pred ccc----cccccc---ccccCccEEEEEEeCCCH
Q 032516 64 QED----YNRLRP---LSYRGADVFILAFSLISK 90 (139)
Q Consensus 64 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 90 (139)
+.. .+.+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 222333 346899999999999875
No 184
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.63 E-value=3.1e-16 Score=114.73 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (139)
+|+++|++++|||||+++++. ...|....+ ..+......+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 899999999999999999981 111111111 1233334569999999999998777778899999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCc
Q 032516 88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLGK 122 (139)
Q Consensus 88 ~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~n-K~D~ 122 (139)
++. ..... +.++..+... ++|. ++++| |+|+
T Consensus 93 ~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST 125 (370)
T ss_dssp TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS
T ss_pred CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC
Confidence 543 33333 4455555543 5676 88888 9998
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.63 E-value=8.4e-16 Score=119.76 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=82.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------------eeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT----------------VFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 66 (139)
++..+|+++|+.|+|||||+++++..........+ .+..+ ..........+.+++|||||+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45689999999999999999999853321100000 01111 12222333357899999999999
Q ss_pred ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
|......+++.+|++++|+|+++....+. ..++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHH--ccCCEEEEecCCchh
Confidence 99888889999999999999887644443 344455544 479999999999996
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=4.1e-16 Score=126.16 Aligned_cols=117 Identities=21% Similarity=0.138 Sum_probs=79.3
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC-------CCCCC-------CCCceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD-------YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~-------~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
...+||+++|++++|||||++++... .+... ...+.+... ...+.++.....+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45699999999999999999999863 11100 001111111 1112233444679999999999998
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF 124 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~ 124 (139)
......++.+|++|+|+|+++....+. ..++..+.. .++| +++++||+|+..
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~--lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQ--VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHH--HTCSCEEEEEECCTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHH--cCCCeEEEEEeeccccc
Confidence 888888999999999999988643333 234444444 3578 899999999974
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=1.1e-15 Score=116.66 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=85.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCceeeeeeEE-------EEECCeEEEEEEEeCC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--------------TDYVPTVFDNFSAN-------VVVDGSTVNLGLWDTA 62 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--------------~~~~~~~~~~~~~~-------~~~~~~~~~~~i~D~~ 62 (139)
++..+|.|+|+.++|||||..+++...-. .........+..+. +........++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 46789999999999999999999732100 00011111111222 2223344679999999
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
|+.+|.......++-+|++|+|+|+.+....+.. ..|....+ .++|.+++.||+|+..++.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~---~~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM---RATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCCEEEEEECTTSCCCCH
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH---hCCceEEEEecccchhcch
Confidence 9999999999999999999999999988777765 55644443 3799999999999987775
No 188
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.59 E-value=9.1e-15 Score=107.69 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=63.5
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLG 121 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D 121 (139)
+.+++||++||+.++..+..++++++++|+|||+++ .++|++. ..|+..+... .+++|++|+|||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 789999999999999999999999999999999999 8999998 7788877654 37899999999999
Q ss_pred ccc
Q 032516 122 KIF 124 (139)
Q Consensus 122 ~~~ 124 (139)
+..
T Consensus 296 L~~ 298 (402)
T 1azs_C 296 LLA 298 (402)
T ss_dssp HHH
T ss_pred hhh
Confidence 864
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.58 E-value=4e-15 Score=108.15 Aligned_cols=119 Identities=24% Similarity=0.231 Sum_probs=71.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC------Ccee--------------------eee---------------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVF--------------------DNF--------------- 43 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~~--------------------~~~--------------- 43 (139)
...+|+++|.+|+|||||++++++..+.+... ++.. ..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999988753321 1100 000
Q ss_pred ---------eEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCccEEEEE-EeCCCHHHHHHHHHH
Q 032516 44 ---------SANVVVD-GSTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFILA-FSLISKASYENVAKK 99 (139)
Q Consensus 44 ---------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~ 99 (139)
...+.+. .....+.+|||||.. .++.+...|++..+.++++ .|++..-.-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 0001111 112469999999963 2344556677666655554 465432111121 22
Q ss_pred HHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 100 WIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 100 ~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
++..+.. .+.|+++|+||+|+...+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTT
T ss_pred HHHHhCc--CCCceEEEeccccccCcc
Confidence 4444443 478999999999997543
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=106.73 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=68.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------Cceeeee-eEEEEECCeEEEEEEEeCCCccccc-------c
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-------R 69 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-------~ 69 (139)
.++|+++|++|+|||||++++++..+..... ++..... .......+....+.+||++|..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 5789999999999999999999876532111 1111111 1111223344579999999986531 1
Q ss_pred ------------------cccccccCccEEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 70 ------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 70 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+...+++++++.+++|+.... .++...+..|+..+. .+.++++|+||+|+..
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCcc
Confidence 123455667766666665543 466666446766665 4799999999999864
No 191
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=1.5e-14 Score=113.47 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=83.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC--------CCCC--CCCCceeeeeeEEEEE---------C-----CeEEEEEEE
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN--------TFPT--DYVPTVFDNFSANVVV---------D-----GSTVNLGLW 59 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~---------~-----~~~~~~~i~ 59 (139)
++..||+|+|+.++|||||..+++.. .... .+..+...+..+.+++ . ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 46789999999999999999998731 1111 1111112222222222 1 135789999
Q ss_pred eCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 60 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
||||+.+|.......++-+|++|+|+|+.+.-..+.. ..|....+. ++|.+++.||+|+..++.
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQGANF 154 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTTCCH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccCccH
Confidence 9999999999999999999999999999988777664 556555554 699999999999986653
No 192
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.54 E-value=8.5e-16 Score=109.57 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH-HHHHHHH
Q 032516 21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK 98 (139)
Q Consensus 21 sl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 98 (139)
+++.+|+.+.|. ..+.+|++..+...+..++ ++++||+ +++++.+++.+++++|++++|||+++++ +++.+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 688899999998 7888998866654432232 6899999 9999999999999999999999999987 78887 8
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 99 KWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 99 ~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.|+..++. .++|+++|+||+|+...
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDE 130 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCH
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCc
Confidence 89888766 58999999999999643
No 193
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.52 E-value=5.5e-14 Score=102.50 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=55.1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 032516 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKL 120 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~ 120 (139)
.+.+++||++||+.++..+..++++++++|+|||+++ .+++.+. ..|+..+... ..++|++|++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence 4789999999999999999999999999999999999 7899998 6666666543 3689999999999
Q ss_pred Cccc
Q 032516 121 GKIF 124 (139)
Q Consensus 121 D~~~ 124 (139)
|+..
T Consensus 279 DL~~ 282 (362)
T 1zcb_A 279 DLLE 282 (362)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9963
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=1.2e-13 Score=100.52 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=54.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc-
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN- 68 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 68 (139)
++|.++|.+|||||||++++.+........+ |..... ..+.+++. ...+++||+||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 6899999999999999999998764322111 222221 12333332 1469999999988653
Q ss_pred ---ccccc---cccCccEEEEEEeCCC
Q 032516 69 ---RLRPL---SYRGADVFILAFSLIS 89 (139)
Q Consensus 69 ---~~~~~---~~~~~~~~i~v~d~~~ 89 (139)
.+... +++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 33333 3689999999999986
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=4.4e-15 Score=115.26 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=84.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh--CCCCCC--------CCCceeeee-------eEEEEECCeEEEEEEEeCCCccccc
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTD--------YVPTVFDNF-------SANVVVDGSTVNLGLWDTAGQEDYN 68 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~--~~~~~~--------~~~~~~~~~-------~~~~~~~~~~~~~~i~D~~g~~~~~ 68 (139)
..||.|+|+.++|||||..+++. +..... .......+. ...+........++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 46899999999999999999974 221110 000001111 1122234455679999999999999
Q ss_pred ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP 127 (139)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~ 127 (139)
......++-+|++|+|+|+.+.-..+.. ..|....+. ++|.+++.||+|+...+.
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccCCH
Confidence 9999999999999999999988666654 455544443 689999999999987764
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=2.4e-14 Score=102.13 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=60.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC-CCCCCC--------CCceeeee-eEEEEECCeEEEEEEEeCCCc-------ccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~-~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~ 67 (139)
-.++|+++|++|+|||||+++++.. .+...+ .++..... ......++....+.+||++|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999998764 433322 11111111 112222445578999999998 555
Q ss_pred ccccc-------ccccC-------------ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 68 NRLRP-------LSYRG-------------ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 68 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+.+.. .++++ +++++++.+.+ ..+++.... +.+++..++.++++|+||.|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH---HHHHHHTTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCC
Confidence 54443 33322 23344443332 123555422 34444445789999999999864
No 197
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.43 E-value=5.5e-13 Score=98.76 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=75.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 79 (139)
.+.++|++|+|||||++++...... ..+..++.......+..++ ...+.+||++|..+ +..+...+ ++.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 4889999999999999999876421 1111111111122233333 24589999999743 22232223 35689
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516 80 VFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC 125 (139)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~ 125 (139)
.++.++|++ ...+..+ ..+.+++..+. .+.|.++++||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999998 6677777 66766666554 36889999999998643
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.4e-12 Score=94.10 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=74.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----cccc---cccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRP---LSYR 76 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~---~~~~ 76 (139)
....|.++|.||||||||+|++.+..... .+..++-+.....+.+++ .++++.|+||--+-. .... ..++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 34689999999999999999999865322 233333333334455565 458999999964321 1111 2357
Q ss_pred CccEEEEEEeCCCHHHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCcc
Q 032516 77 GADVFILAFSLISKASYENVAKKWIPELRHY---APGVPIILVGTKLGKI 123 (139)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~ 123 (139)
.+|++++|+|++++..-. +.+..++... ....|.+++.||.|..
T Consensus 149 ~ad~il~vvD~~~p~~~~---~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHK---QIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSHHHHH---HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCccHHHH---HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 899999999999874332 2233334332 2467888999999974
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=9.7e-13 Score=96.68 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=49.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 68 (139)
...++.++|.+|+|||||++++.+..+.....+... ......+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457899999999999999999998765332222221 112223333321 2359999999987654
Q ss_pred c-------cccccccCccEEEEEEeCCCHHH
Q 032516 69 R-------LRPLSYRGADVFILAFSLISKAS 92 (139)
Q Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~s 92 (139)
+ ....+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 23456789999999999986544
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=6.6e-11 Score=93.12 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=73.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeee-----------------------------------------
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDN----------------------------------------- 42 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~----------------------------------------- 42 (139)
...+|+++|.+++|||||+|++++..+.+.... .+...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 357999999999999999999999877432211 11000
Q ss_pred ----------eeEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCccEEEEEEeCCCHHHHHHHHH
Q 032516 43 ----------FSANVVVDGSTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFILAFSLISKASYENVAK 98 (139)
Q Consensus 43 ----------~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 98 (139)
....+...+ ...+.++||||-.. +..+...++ ..+|.+++|+|+++.-.-.+. .
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 000111111 12478999999543 122233344 578999999999764332222 2
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 99 KWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 99 ~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
.++..+.. .+.|+++|.||+|+...+
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCCcc
Confidence 45555554 468999999999997543
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.20 E-value=1.8e-11 Score=82.98 Aligned_cols=109 Identities=14% Similarity=0.020 Sum_probs=62.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-------------eEEEEEC------------------CeE
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVD------------------GST 53 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~------------------~~~ 53 (139)
+..+++++|.+|+|||||+++++...............+ ......+ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999987522111111111000 0001111 123
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.++.+|||+|+..... .+....+.+++|+|+++... .. ..+... .+.|+++|+||+|+..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~-~~~~~~-----~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV-EKHPEI-----FRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH-HHCHHH-----HHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh-hhhhhh-----hhcCCEEEEecccCCc
Confidence 5688999998621111 11125678999999876532 11 111111 1478999999999864
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.20 E-value=8.9e-11 Score=85.75 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=53.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCC-ceeeeeeEEEEECC-------------------eEEEEEEEeCCCcc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVP-TVFDNFSANVVVDG-------------------STVNLGLWDTAGQE 65 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~ 65 (139)
++|.++|.+|+|||||++++.+.... ..+.. |...... ...+.+ ....+++||+||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999875421 12211 2211111 112221 23569999999987
Q ss_pred cccc----ccc---ccccCccEEEEEEeCCC
Q 032516 66 DYNR----LRP---LSYRGADVFILAFSLIS 89 (139)
Q Consensus 66 ~~~~----~~~---~~~~~~~~~i~v~d~~~ 89 (139)
+..+ +.. ..++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6532 222 24689999999999975
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.17 E-value=8.9e-12 Score=90.62 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=41.2
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+.+|||||... .....++.+|.+++|+|.+..+....+ . ....+.|+++|+||+|+..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEH 231 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGG
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcC
Confidence 5789999999432 222345889999999998765444332 1 1112468999999999863
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.12 E-value=9.9e-11 Score=84.98 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=35.6
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
..+.++||+|.... .......+|.+++|+|++++.....+ .. .+ -+.|.++|.||+|+..
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCC
Confidence 46899999995321 12345789999999999875433322 11 11 2357899999999863
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.12 E-value=4.9e-14 Score=95.99 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=29.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD 41 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~ 41 (139)
+..+|+++|.+|||||||+++++...+...+.++++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 4689999999999999999999987665544445443
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.10 E-value=1.5e-10 Score=80.28 Aligned_cols=69 Identities=14% Similarity=-0.068 Sum_probs=41.8
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+++.+|||||+........ ..+.. +.+++++|.... ..+............. .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 4799999999876543221 23456 788888887533 3332221111111111 4689999999999864
Q ss_pred c
Q 032516 125 C 125 (139)
Q Consensus 125 ~ 125 (139)
.
T Consensus 186 ~ 186 (262)
T 1yrb_A 186 E 186 (262)
T ss_dssp H
T ss_pred c
Confidence 3
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.02 E-value=2.7e-11 Score=87.65 Aligned_cols=60 Identities=20% Similarity=0.080 Sum_probs=38.2
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+++.+|||||...... ...+.+|++++|+|++..+.+..+ .. .. .+.|.++|+||+|+..
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDN 208 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTC
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCC
Confidence 5699999999654332 245889999999998765432222 11 11 1367899999999864
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=3.6e-09 Score=77.84 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=56.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCce-eeeeeEEEEECCe---------------EEEEEEEeCCCcccc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTV-FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 67 (139)
...++.++|.+|+|||||++.+.+... .....|.. -......+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999998664 33223322 2222333444431 135899999996432
Q ss_pred cc-------cccccccCccEEEEEEeCCC
Q 032516 68 NR-------LRPLSYRGADVFILAFSLIS 89 (139)
Q Consensus 68 ~~-------~~~~~~~~~~~~i~v~d~~~ 89 (139)
.+ .....++.+|+++.|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22334688999999999864
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=5.6e-10 Score=81.58 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=64.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC-----C-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc----c----c
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN-----T-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----R----P 72 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~----~ 72 (139)
.+++++|.+|+|||||+|++++. . ......+.+ +........+.. +.++||||-...... . .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt-T~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT-TLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS-SCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe-EEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 57999999999999999999975 1 111111111 111122333332 799999996432211 1 1
Q ss_pred ccc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 73 LSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 73 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
..+ +..+.++++.+....-.+..+ . .++.+.. .+.|++++.||+|..+..
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCcccccc
Confidence 112 567888888887432111222 1 1222222 468999999999987443
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.73 E-value=1.3e-08 Score=71.38 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=61.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCC--------CCCceeeeeeEEEEE--CCeEEEEEEEeCCCcccccc------
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNR------ 69 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~------ 69 (139)
.++++++|++|+|||||++.+++...... ..+............ .+....+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999886321111 001000000111111 12223688999987421100
Q ss_pred -c---------------------ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 70 -L---------------------RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 70 -~---------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
+ ....+..+++.+++.|... ..+...+...+..+.+ ..++++|.+|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCCH
Confidence 0 0011234577777777431 2233333345555554 3899999999998743
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.73 E-value=9.9e-10 Score=80.26 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=63.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCC----Cceeeee-eEEEEECCeEEEEEEEeCCCcccccccc----cc---
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYV----PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR----PL--- 73 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~----~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~--- 73 (139)
.+++++|.+|+|||||+|++++..... ... ...+... ......+.. +.++||||-.....+. ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999753111 001 1111111 122223332 7899999964332211 11
Q ss_pred -c--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516 74 -S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126 (139)
Q Consensus 74 -~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~ 126 (139)
. .+..+.++++++......+..+ ..++.+.. .+.|++++.||+|..+..
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence 1 2566778888876322111222 11222222 468999999999987544
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.72 E-value=1.1e-07 Score=67.64 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=51.0
Q ss_pred cccccccccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
++++..+...+++++|++++|+|++++. +++.+ +.|+..+.. .++|+++|+||+|+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCc
Confidence 6778888888999999999999999886 88887 788887766 67999999999999643
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=1.2e-07 Score=70.33 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=59.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeee-eEEEEE--CCeEEEEEEEeCCCcccc-------c-----
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNF-SANVVV--DGSTVNLGLWDTAGQEDY-------N----- 68 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~--~~~~~-~~~~~~--~~~~~~~~i~D~~g~~~~-------~----- 68 (139)
.++++++|++|+|||||++.+++..+....... ..... ...+.. .+....+.++|++|.... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 467999999999999999999886543221111 11111 111111 222346889998874321 0
Q ss_pred --ccc----cc---------cccCc--cE-EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 69 --RLR----PL---------SYRGA--DV-FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 69 --~~~----~~---------~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
..+ .. ...++ |+ ++++.|... .+...+..++..+. .+.|+++|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh---hCCCEEEEEcchhccch
Confidence 000 00 11222 33 445556543 23333233444443 57899999999998643
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.69 E-value=4.6e-09 Score=70.93 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=41.6
Q ss_pred CCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHH---HHHHhhh--CCCCCEEEEeecC-Ccccc
Q 032516 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHY--APGVPIILVGTKL-GKIFC 125 (139)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~~vivv~nK~-D~~~~ 125 (139)
.+||+..++.|..|+.++|++|+|+|.+|.+.++ ..+++ ...+.+. ..++|++|++||. |++.+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 3488999999999999999999999999885443 32333 4444443 2579999999995 67533
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.66 E-value=3.6e-08 Score=69.54 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=35.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 65 (139)
..++++++|.||||||||+|++.+...... ..+.+... ...+..+. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS-QQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee-eEEEEeCC---CEEEEECcCcC
Confidence 468999999999999999999997653211 11111111 11222232 48999999964
No 216
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.65 E-value=1.7e-08 Score=72.93 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=34.4
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.++.++||+|...-. ......+|.+++++|.+..+..+.+ +.. +. +.+.+++.||+|+.
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDG 206 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTT
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhcc
Confidence 568999999964321 1234688999999998654332222 111 11 23556677999964
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.62 E-value=2.5e-08 Score=69.66 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=34.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 66 (139)
++++++|.+|+|||||+|++.+...... .++.+... ...+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5899999999999999999998664321 12222211 11222222 479999999764
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.54 E-value=8.5e-08 Score=72.63 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=62.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh------CCCC----CCCCCce-----------eeeeeEEEE--------------
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS------NTFP----TDYVPTV-----------FDNFSANVV-------------- 48 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~------~~~~----~~~~~~~-----------~~~~~~~~~-------------- 48 (139)
.+...|+++|.+||||||+++++.. .+.. +.+.+.. .........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3466899999999999999999883 2110 0001100 000000000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 032516 49 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLG 121 (139)
Q Consensus 49 ~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~nK~D 121 (139)
.....+++.++||||...... .... . ...+|.+++|+|++....... ....+.+ ..|+ .+|.||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence 000235799999999764221 1110 1 226899999999976543222 2223332 2564 88999999
Q ss_pred cc
Q 032516 122 KI 123 (139)
Q Consensus 122 ~~ 123 (139)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 86
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.47 E-value=5e-08 Score=68.84 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=46.5
Q ss_pred CCCcccccccccccccCccEEEEEEeCCCHHHHH---HHHHHHHHHHhhh--CCCCCEEEEeec-CCcccc
Q 032516 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYE---NVAKKWIPELRHY--APGVPIILVGTK-LGKIFC 125 (139)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~~l~~~--~~~~~vivv~nK-~D~~~~ 125 (139)
.+||+..+..|..|+.++|++|+|+|.+|.+.++ ++ ..+...+.+. ..++|++|.+|| .|++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 4688999999999999999999999999887544 32 2233444332 368999999996 688644
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=3.7e-07 Score=70.31 Aligned_cols=64 Identities=19% Similarity=0.089 Sum_probs=39.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEE---EE-CCeEEEEEEEeCCCcccc
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANV---VV-DGSTVNLGLWDTAGQEDY 67 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~---~~-~~~~~~~~i~D~~g~~~~ 67 (139)
.+...|+++|.||+|||||+|++++....-....++ +....... .. ......+.++||||....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 356889999999999999999999865321111111 11111111 11 122346899999997543
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.21 E-value=1.6e-06 Score=64.56 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=38.9
Q ss_pred EEEEEEEeCCCcccccc-cc-----cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCcc
Q 032516 53 TVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLGKI 123 (139)
Q Consensus 53 ~~~~~i~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-~-vivv~nK~D~~ 123 (139)
.+++.++||||...... .. -..+..+|.+++|.|+..... .. .....+. +.. + ..+|.||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~--~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AG--IQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HH--HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HH--HHHHHHh---hcccCCeEEEEeCCCCc
Confidence 35689999999764211 10 112236899999999865542 11 1222222 345 5 88999999975
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.17 E-value=4.6e-06 Score=61.78 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeee--eEEEEECCeEEEEEEEeCCCccccccccccc-----ccC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNF--SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS-----YRG 77 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~~ 77 (139)
...+.++|++|+|||||+|.+.+-.-.....-.. +... ...+.-....-.+.+||++|..........+ +..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3479999999999999999998732211110000 1000 0111111111147899999853211111111 233
Q ss_pred ccEEEEEEeCC--CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 78 ADVFILAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 78 ~~~~i~v~d~~--~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+..++ ++.. ..+.. .+...+.. .+.|+++|.||.|+.
T Consensus 149 ~~~~~~-lS~G~~~kqrv-----~la~aL~~--~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI-----DIAKAISM--MKKEFYFVRTKVDSD 188 (413)
T ss_dssp CSEEEE-EESSCCCHHHH-----HHHHHHHH--TTCEEEEEECCHHHH
T ss_pred cCCeEE-eCCCCccHHHH-----HHHHHHHh--cCCCeEEEEecCccc
Confidence 344444 6765 32222 23334443 358999999999986
No 223
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.16 E-value=3.6e-08 Score=74.06 Aligned_cols=99 Identities=15% Similarity=0.010 Sum_probs=58.7
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---eeEEEEECCeEEEEEEEeCCCccc--ccccc-------
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN---FSANVVVDGSTVNLGLWDTAGQED--YNRLR------- 71 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~------- 71 (139)
..+.+|+++|.+|+||||+.+++...-... ..++.... .... ..+......+||..|++. .+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~--~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRD--MVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHH--HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhh--hccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999987542110 11111100 0000 011112346899888732 23322
Q ss_pred -cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q 032516 72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHY 107 (139)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~ 107 (139)
..++....+.++|+|.++. +.+.. +.|.+.+++.
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~ 148 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN 148 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc
Confidence 4566667888999999887 44443 6777777664
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=3.3e-06 Score=65.42 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|++|+|||||++.+.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4899999999999999998875
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.01 E-value=5.4e-06 Score=61.85 Aligned_cols=64 Identities=17% Similarity=0.046 Sum_probs=38.4
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 54 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
+++.++||+|........- .....+|.+++|.|++..+..... ...+.+. -.+..+|.||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 5789999999643221110 112356889999998765443322 2333332 23567899999975
No 226
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.95 E-value=2.3e-06 Score=62.43 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=46.7
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.+++|++..+.+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 56788888888999999999999998853 4576777776678999999999999643
No 227
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.90 E-value=1.3e-05 Score=59.96 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+..-|.++|++++|||+|+|++++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 455689999999999999999985
No 228
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.71 E-value=5.2e-06 Score=60.62 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=44.9
Q ss_pred CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
.++.|++..+.++++++++++|+|++++.+ .|.+.+.+...+.|+++|+||+|+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCC
Confidence 578899988888899999999999998763 355555555568999999999999643
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.67 E-value=2.3e-05 Score=58.38 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCccc--cccc----ccc--cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516 53 TVNLGLWDTAGQED--YNRL----RPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123 (139)
Q Consensus 53 ~~~~~i~D~~g~~~--~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~ 123 (139)
.+++.++||+|... .... ... .....+.+++|.|+...+..... ...+.+. -.+..+|.||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccc
Confidence 35688999999644 1110 000 01245889999998765443332 2333322 14578899999974
No 230
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.55 E-value=5.1e-05 Score=50.65 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=21.1
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
|.......+.++|++|+|||||++.+..
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5555667899999999999999987754
No 231
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.55 E-value=6.4e-05 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=21.7
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...--++++|++|+|||||++.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 33445689999999999999999885
No 232
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.53 E-value=6.3e-05 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988765
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=5.7e-05 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
--++++|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999876
No 234
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.52 E-value=7.6e-05 Score=48.77 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
|+.+....|++.|.+||||||+.+.+..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 6666667899999999999999988754
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.51 E-value=8.1e-05 Score=48.81 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
|...+..+|+++|.+||||||+.+.+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44555678999999999999999877643
No 236
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.46 E-value=9.1e-05 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-.++++|++|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999988754
No 237
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.45 E-value=9.7e-05 Score=48.92 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=21.9
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
|+-.....++++|++||||||+++.+...
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33344557999999999999999988764
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.43 E-value=9e-05 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.++++|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 239
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.40 E-value=0.0001 Score=49.14 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=21.6
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
|...+...|++.|.+||||||+++.+..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444567899999999999999988764
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.39 E-value=5.2e-05 Score=53.34 Aligned_cols=59 Identities=14% Similarity=0.012 Sum_probs=40.1
Q ss_pred EEeCCCcc-cccccccccccCccEEEEEEeCCCHHHHH--HHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYE--NVAKKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 58 i~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
+-..||+. .........++++|+++.|+|+.++.+.. .+ +.|+ .+.|.++|.||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~l-------~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDIL-------KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHHC-------SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHHH-------CCCCEEEEEECcccCC
Confidence 44578876 44445556788999999999999887664 23 3332 5799999999999974
No 241
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.00019 Score=46.40 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....++++|++|+||||+.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999987753
No 242
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.36 E-value=9.4e-05 Score=48.03 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHH
Q 032516 8 KCVTVGDGAVGKTCMLIS 25 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~ 25 (139)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.35 E-value=0.00013 Score=48.30 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
|+++|++||||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.35 E-value=0.00016 Score=46.72 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.35 E-value=0.00013 Score=48.22 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--+.++|++|+||||+++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999988763
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00015 Score=47.53 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-.++++|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999988764
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00015 Score=46.41 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=18.4
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q 032516 7 IKCVTVGDGAVGKTCMLISY 26 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~ 26 (139)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.32 E-value=0.00014 Score=47.73 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
+.++|++|+||||+++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998874
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.32 E-value=0.00015 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-|+++|++||||||+++++..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 250
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.30 E-value=0.00023 Score=47.11 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+.+...|++.|.+||||||+.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999988763
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.30 E-value=0.00016 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--|+++|++|+||||+++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999998864
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.29 E-value=0.00018 Score=46.13 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|++.|.+||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 253
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.28 E-value=0.00018 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988854
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.0002 Score=47.44 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.|+++|++||||||+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999988764
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.28 E-value=0.00018 Score=48.81 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--++++|++|+|||||++.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999998763
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.27 E-value=0.00019 Score=47.89 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....+.++|++|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999987653
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00024 Score=46.98 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=21.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.....|++.|.+||||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988764
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.26 E-value=8.9e-05 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|++|+|||||+|.+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999998764
No 259
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.26 E-value=0.0002 Score=47.94 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988854
No 260
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.25 E-value=0.00025 Score=48.60 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++.+|++.|.+||||||+.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 261
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.24 E-value=0.00021 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
++|+++|+|||||+|..+++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988764
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.24 E-value=0.00019 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|+|||||++.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998876
No 263
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.24 E-value=0.00022 Score=45.93 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|+++|++|+||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988765
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.23 E-value=0.0002 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||++.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998765
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.00024 Score=45.96 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-|++.|.+||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988875
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00027 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988754
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00024 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|+++|.+||||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988764
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.19 E-value=0.00027 Score=47.44 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.18 E-value=0.00035 Score=45.50 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....|+++|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988763
No 270
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.18 E-value=0.00033 Score=46.43 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|++.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999988865
No 271
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.0003 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999988764
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.16 E-value=0.00029 Score=48.22 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHH
Q 032516 6 FIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.-.|+++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.00031 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999988765
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00035 Score=45.62 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+..|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987753
No 275
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.15 E-value=0.0003 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|++.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987754
No 276
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.15 E-value=0.00033 Score=47.09 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|.++|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987754
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.15 E-value=0.00034 Score=49.27 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....-|++.|++||||||+++++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.14 E-value=0.00029 Score=46.14 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998875
No 279
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.13 E-value=0.00036 Score=48.00 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=21.1
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..+.+.|.+.|.+||||||+.+.+..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999987754
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.12 E-value=0.00036 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987754
No 281
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.12 E-value=0.00029 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|++.|.+||||||+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988763
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.11 E-value=0.00035 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-++++|.+|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45889999999999999998863
No 283
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.11 E-value=0.00035 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.6
Q ss_pred cceeEEEEECCCCCCHHHHHHHH
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISY 26 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~ 26 (139)
.+..||+++|.++|||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999875
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00038 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|+++|.+||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988754
No 285
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.10 E-value=0.00031 Score=47.01 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 286
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.09 E-value=0.00039 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988765
No 287
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00021 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=16.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 288
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.0003 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988754
No 289
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00039 Score=46.70 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 290
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.05 E-value=0.00038 Score=46.09 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+|.++|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999988765
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.04 E-value=0.00036 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.++++|++|+|||||+|.+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999998754
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.03 E-value=0.00049 Score=45.66 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 293
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.03 E-value=0.00054 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
+...|++.|.+||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999888763
No 294
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.03 E-value=0.00049 Score=45.33 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.4
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
+++..|.+.|.+||||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999888764
No 295
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.02 E-value=0.00043 Score=44.79 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|+++|.+||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.02 E-value=0.00059 Score=48.15 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHH
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.+...|.+.|++|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999997654
No 297
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.02 E-value=0.00054 Score=43.82 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988764
No 298
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.01 E-value=0.00047 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
-++++|+.|+|||||++.+...-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999998887643
No 299
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.01 E-value=0.0004 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|+.|+|||||++.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999987765
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00036 Score=46.21 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.--|.++|++|+||||+.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987654
No 301
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.00 E-value=0.00054 Score=46.48 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+..+|+++|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988754
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00046 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
++.++|++|+||||+++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999988765
No 303
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.99 E-value=0.00049 Score=45.06 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988753
No 304
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.00058 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999888753
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.98 E-value=0.00047 Score=46.79 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 032516 8 KCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~ 27 (139)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999877
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.98 E-value=0.00062 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+.|.++|.+||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999988865
No 307
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.97 E-value=0.00059 Score=46.07 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.00081 Score=43.87 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|+++|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999987754
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.94 E-value=0.00055 Score=47.59 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|+||||+++.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999988765
No 310
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.94 E-value=0.00043 Score=47.66 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....|+++|.+||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.93 E-value=0.00073 Score=44.87 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....|.++|.+|+||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988865
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.00077 Score=44.72 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=20.9
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....-+.++|.+|+||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999987753
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.92 E-value=0.00065 Score=46.02 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
|+++|+|||||+|..+++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988764
No 314
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00061 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-|+++|++||||||+.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.00076 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 316
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.90 E-value=0.00058 Score=48.40 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 032516 8 KCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~ 27 (139)
-+.++|++|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.0005 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987754
No 318
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.00075 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.00054 Score=45.91 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.89 E-value=0.00091 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=20.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....-+.++|++|||||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999987654
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.89 E-value=0.00066 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887753
No 322
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.89 E-value=0.00052 Score=46.56 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|+.|+|||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999987765
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.88 E-value=0.00068 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
=.++++|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999987764
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.87 E-value=0.00095 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=20.5
Q ss_pred cceeEEEEECCCCCCHHHHHHHHH
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
..++-+.++|++||||||+++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998774
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.86 E-value=0.00088 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
....|.++|+.|+||||+++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999987765
No 326
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.86 E-value=0.00057 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.+.++|++|+|||||++.+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 47899999999999999988643
No 327
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.86 E-value=0.00064 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.85 E-value=0.00079 Score=47.18 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.0
Q ss_pred cceeEEEEECCCCCCHHHHHHHHH
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.+.+.|.+.|.+||||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999998875
No 329
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.85 E-value=0.00065 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999887653
No 330
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.84 E-value=0.00068 Score=47.51 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-+.++|+.|+|||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999987765
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.0008 Score=44.05 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988765
No 332
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.83 E-value=0.00079 Score=46.21 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|+.|+|||||++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999988765
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.82 E-value=0.00086 Score=43.00 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987754
No 334
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.82 E-value=0.00099 Score=44.57 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
++..|++.|.+||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988765
No 335
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.82 E-value=0.00078 Score=46.41 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.82 E-value=0.00097 Score=43.41 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-+.++|.+|+||||++.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 337
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.82 E-value=0.00075 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999887653
No 338
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.81 E-value=0.00072 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3789999999999999887753
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.81 E-value=0.00063 Score=49.33 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-+++++|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988765
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.80 E-value=0.00087 Score=43.56 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999987754
No 341
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.80 E-value=0.00078 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887653
No 342
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.80 E-value=0.00085 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|++|+|||||++.+...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 343
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.79 E-value=0.00084 Score=46.30 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888774
No 344
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.79 E-value=0.00076 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887653
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00033 Score=45.70 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988775
No 346
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.77 E-value=0.00057 Score=46.27 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 032516 8 KCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~ 27 (139)
-+.++|++|+||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999888
No 347
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.77 E-value=0.00083 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|+.|+|||||++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999988765
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00095 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|+|||||++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999998876
No 349
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.75 E-value=0.00085 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887653
No 350
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.75 E-value=0.00095 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999887763
No 351
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.75 E-value=0.00078 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.+++.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988765
No 352
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.75 E-value=0.00089 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999887653
No 353
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.74 E-value=0.00097 Score=46.45 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888774
No 354
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.74 E-value=0.00028 Score=46.95 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999988764
No 355
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.74 E-value=0.00086 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 356
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.73 E-value=0.0011 Score=42.38 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.|.+.|.+||||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987754
No 357
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.73 E-value=0.00094 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 358
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.72 E-value=0.0011 Score=45.36 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.++.|.+.|++|+||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998775
No 359
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.0012 Score=44.33 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.+++.|++|+|||++++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988875
No 360
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.69 E-value=0.0011 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999988765
No 361
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.68 E-value=0.0011 Score=44.29 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998873
No 362
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.68 E-value=0.00075 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888753
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.68 E-value=0.0016 Score=42.22 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...|.+.|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987754
No 364
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.67 E-value=0.0011 Score=45.93 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887653
No 365
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.66 E-value=0.0011 Score=46.18 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|+.|+|||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999988765
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.65 E-value=0.0014 Score=45.10 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 032516 7 IKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~ 27 (139)
..|.++|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998876
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.65 E-value=0.0014 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...-+.++|++|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999987765
No 368
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.65 E-value=0.0012 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999888763
No 369
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.64 E-value=0.0012 Score=47.91 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|+||||+++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998765
No 370
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.64 E-value=0.0015 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 371
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.64 E-value=0.00077 Score=42.81 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||+|++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988876
No 372
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.64 E-value=0.002 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...-|++.|.+|+||||+++++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 446799999999999999988765
No 373
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.64 E-value=0.0016 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999988763
No 374
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.63 E-value=0.0013 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|++|+|||||++.+...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999988764
No 375
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.0014 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999998877643
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.0013 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHH
Q 032516 6 FIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.-.++++|++|+||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3468999999999999998876
No 377
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.61 E-value=0.0036 Score=44.55 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=37.4
Q ss_pred ccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516 71 RPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125 (139)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~ 125 (139)
....+.++|.+++|+|+.++. +...+ +.++..... .++|.++|.||+|+...
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i-~r~L~~~~~--~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEA--NDIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECCccCch
Confidence 334578999999999998764 33444 555544433 57899999999999654
No 378
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.60 E-value=0.0016 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999887763
No 379
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0015 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 380
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.56 E-value=0.0016 Score=43.42 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 381
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.56 E-value=0.0015 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|+||||+++.+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998775
No 382
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.56 E-value=0.0015 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.8
Q ss_pred cceeEEEEECCCCCCHHHHHHHH
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISY 26 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~ 26 (139)
.+.+|++++|...|||||+++++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 45799999999999999999875
No 383
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.55 E-value=0.00029 Score=48.98 Aligned_cols=55 Identities=9% Similarity=-0.039 Sum_probs=36.5
Q ss_pred CCCccc-ccccccccccCccEEEEEEeCCCHHHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516 61 TAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLGKIF 124 (139)
Q Consensus 61 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~l~~~~~~~~vivv~nK~D~~~ 124 (139)
.||+.. ........++++|.++.|+|+.++.+..... + ++ +.|.++|.||+|+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCC
Confidence 467652 3334456788999999999999886654320 2 21 689999999999974
No 384
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.54 E-value=0.00087 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 589999999999999977765
No 385
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.0017 Score=42.82 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988875
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0022 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..|+++|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988764
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0023 Score=42.60 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-|+++|.+|+||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987653
No 388
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0018 Score=43.65 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 389
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.49 E-value=0.002 Score=45.38 Aligned_cols=25 Identities=12% Similarity=-0.104 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+..+++.|+||+|||++++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999888763
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.49 E-value=0.0015 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.++++|++|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999988763
No 391
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.49 E-value=0.0022 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.48 E-value=0.0019 Score=43.73 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..-|.+.|..|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999887653
No 393
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.48 E-value=0.0024 Score=42.31 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|.+.|.+||||||+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987754
No 394
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.47 E-value=0.0042 Score=46.50 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
+..=|.++|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34557799999999999999554
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0018 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.|+++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999987754
No 396
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.47 E-value=0.0016 Score=45.72 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999988764
No 397
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.47 E-value=0.0019 Score=47.13 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
+.++|++|+|||||++.+..
T Consensus 57 ~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCchHHHHHHHHhc
Confidence 78999999999999987765
No 398
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.47 E-value=0.0021 Score=45.09 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999975543
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0031 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.--++++|+.|+||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999987753
No 400
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0021 Score=44.56 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999988764
No 401
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.46 E-value=0.0027 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+.--++++|++|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999988764
No 402
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.45 E-value=0.00089 Score=47.19 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.0
Q ss_pred CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
|+.. .+-|.+.|++||||||+.+.+..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 4443 45699999999999999987754
No 403
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.45 E-value=0.0017 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|+.|+|||||++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999988765
No 404
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0025 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 405
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.43 E-value=0.002 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+.++|++|+|||||++.+.+-
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 789999999999999887753
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.43 E-value=0.0016 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 407
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.43 E-value=0.0023 Score=40.13 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
...+++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999998887643
No 408
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0025 Score=43.26 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.2
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHh
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.....|.++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999987764
No 409
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.42 E-value=0.0017 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+.++|++|+|||||++.+.+-
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 789999999999999877763
No 410
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.42 E-value=0.0021 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 411
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.41 E-value=0.002 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3789999999999999887753
No 412
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.41 E-value=0.0021 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-++++|+.|+||||+++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999988763
No 413
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.40 E-value=0.0021 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+.++|++|+|||||++.+.+-
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHcC
Confidence 789999999999999887753
No 414
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.0021 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3789999999999999887753
No 415
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.38 E-value=0.0037 Score=43.21 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.1
Q ss_pred cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 4 ~~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999988764
No 416
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.36 E-value=0.0023 Score=46.78 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+.++|++|+|||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 789999999999999887753
No 417
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.36 E-value=0.0023 Score=46.72 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-+.++|++|+|||||++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 378999999999999988765
No 418
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.34 E-value=0.0018 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.+++.|+||+|||+++..+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888766
No 419
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.33 E-value=0.0029 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-|+++|++|||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988765
No 420
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.0026 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.+++.|++|+|||++++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999988876
No 421
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.27 E-value=0.0029 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999988875
No 422
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0042 Score=40.90 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.|.+.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987754
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0045 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.--++++|+.|+||||++..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999987764
No 424
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.0026 Score=42.96 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999887764
No 425
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.24 E-value=0.0029 Score=44.59 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-.+++.|++|+|||++++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999988764
No 426
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.23 E-value=0.0028 Score=41.65 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
++++|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 427
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.22 E-value=0.0025 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.++++|++||||||+++.+++-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999988764
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.20 E-value=0.0048 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHH
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~ 27 (139)
...+|+++|++|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999997554
No 429
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.19 E-value=0.0045 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999887653
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.18 E-value=0.003 Score=40.85 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.+|+|+.|+||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999988754
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.18 E-value=0.0028 Score=44.12 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 432
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0028 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.+++.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998876
No 433
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.17 E-value=0.0047 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.--++++|.+|+||||+++.+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999988753
No 434
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.17 E-value=0.0042 Score=42.39 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+.+++.++|.|||||||+.+++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467899999999999999988754
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.16 E-value=0.0034 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.028 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.++++|++|+|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999988875
No 436
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.15 E-value=0.002 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 3789999999999999887653
No 437
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.14 E-value=0.0029 Score=46.48 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++.+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999987765
No 438
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.14 E-value=0.0035 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..|+|+|++|+|||+++..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 439
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.13 E-value=0.0036 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+++.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988764
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.12 E-value=0.0022 Score=45.74 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
--+++.|..|+|||||++.+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 34688999999999999999865
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.12 E-value=0.0051 Score=41.74 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=20.8
Q ss_pred CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 3 ~~~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..+..-|++.|.+|+||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999987653
No 442
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.11 E-value=0.0026 Score=43.86 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+...|++.|.+|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999987764
No 443
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.11 E-value=0.0036 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999888753
No 444
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0032 Score=47.24 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|+.|+|||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999988765
No 445
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.07 E-value=0.0045 Score=44.14 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56999999999999999988864
No 446
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0039 Score=44.55 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999888764
No 447
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0032 Score=45.00 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 032516 9 CVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~ 28 (139)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999988766
No 448
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0038 Score=44.84 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-.+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988875
No 449
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.05 E-value=0.0046 Score=43.96 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999988763
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.00 E-value=0.005 Score=41.82 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-|++.|.+|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999988765
No 451
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0054 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+-.|++.|+||+|||++++.+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999988763
No 452
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0055 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
+-.+++.|+||+|||++++.+.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999988763
No 453
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.98 E-value=0.0019 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999887753
No 454
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0046 Score=44.00 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999887653
No 455
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.94 E-value=0.0051 Score=43.53 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+++.|++|+|||||++++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.93 E-value=0.0047 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhCC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
++.++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999998888753
No 457
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.92 E-value=0.0024 Score=40.05 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999766553
No 458
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.92 E-value=0.0048 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 459
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.91 E-value=0.0047 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-+++++|+||+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988765
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.89 E-value=0.0062 Score=39.89 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.-+++.|++|+||||++-.+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45899999999999999988764
No 461
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.89 E-value=0.0022 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999998876
No 462
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.88 E-value=0.0059 Score=43.41 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999988654
No 463
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.88 E-value=0.0044 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988765
No 464
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0055 Score=40.81 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
+..|.+.|.+|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987654
No 465
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.88 E-value=0.006 Score=41.93 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~~ 30 (139)
...+++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3569999999999999998887653
No 466
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0066 Score=45.27 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 5 ~~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+-.|++.|+||+|||++++.+.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999998763
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.87 E-value=0.0054 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++-+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999988765
No 468
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.86 E-value=0.0058 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999888763
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.86 E-value=0.0047 Score=44.64 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|++|+|||||++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 470
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.85 E-value=0.0059 Score=38.63 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 032516 9 CVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~ 27 (139)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998865
No 471
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.83 E-value=0.0096 Score=42.30 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.--++++|++|+||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999987653
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.83 E-value=0.0066 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987765
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.83 E-value=0.0087 Score=42.70 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-|+++|++|||||+|..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999998875
No 474
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.82 E-value=0.0051 Score=43.61 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+++.|++|+|||||++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998763
No 475
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.80 E-value=0.0064 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|+||+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888753
No 476
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.79 E-value=0.0063 Score=43.95 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..+++.|++|+|||++++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999988764
No 477
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.0055 Score=44.14 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
.-.+++.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988876
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.76 E-value=0.0074 Score=43.15 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-|++.|++|||||+|..++...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999988753
No 479
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.75 E-value=0.026 Score=39.85 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 032516 9 CVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 9 i~iiG~~~~GKssl~~~~~~~ 29 (139)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998764
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.75 E-value=0.0071 Score=43.60 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-|+++|++|||||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988875
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.75 E-value=0.0065 Score=45.85 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-+.++|++|+|||||++.+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999987764
No 482
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.74 E-value=0.0059 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHH
Q 032516 6 FIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~ 27 (139)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999998765
No 483
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.73 E-value=0.0078 Score=43.47 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.73 E-value=0.0072 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+.++|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999887763
No 485
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.71 E-value=0.0066 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHh
Q 032516 7 IKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~ 28 (139)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988875
No 486
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.69 E-value=0.0067 Score=46.38 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.++++|++|+||||+++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.67 E-value=0.0059 Score=46.41 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 032516 8 KCVTVGDGAVGKTCMLISY 26 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~ 26 (139)
-++++|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999996
No 488
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.66 E-value=0.008 Score=40.57 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 032516 8 KCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~ 27 (139)
-+++.|+||+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998875
No 489
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.66 E-value=0.0062 Score=44.90 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
-+.++|++|+|||||+..++-
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 378999999999999998863
No 490
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.65 E-value=0.0084 Score=40.32 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHh
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~ 28 (139)
..-|++.|.+|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999988753
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.008 Score=44.37 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
+-.+++.|+||+|||.+++.+.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999988763
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.59 E-value=0.0087 Score=44.69 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHhC
Q 032516 7 IKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 7 ~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999888764
No 493
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.59 E-value=0.01 Score=45.21 Aligned_cols=22 Identities=36% Similarity=0.200 Sum_probs=19.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHH
Q 032516 6 FIKCVTVGDGAVGKTCMLISYT 27 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~ 27 (139)
+.-|+++|.+|+||||+.+++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999998874
No 494
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.56 E-value=0.005 Score=43.72 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+++.|++|+|||++++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999988876
No 495
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.56 E-value=0.009 Score=41.93 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999888764
No 496
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.56 E-value=0.0049 Score=47.56 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++-+.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999988765
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.0076 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 032516 8 KCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~~ 29 (139)
-+.++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999887763
No 498
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.56 E-value=0.0054 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999987765
No 499
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.0097 Score=43.37 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Q 032516 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (139)
Q Consensus 6 ~~ki~iiG~~~~GKssl~~~~~~~ 29 (139)
...+++.|++|+|||++++.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988764
No 500
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.53 E-value=0.0047 Score=47.51 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 032516 8 KCVTVGDGAVGKTCMLISYTS 28 (139)
Q Consensus 8 ki~iiG~~~~GKssl~~~~~~ 28 (139)
.+.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999976654
Done!