BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032521
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
QDYY+IL V A + +IR Y++LA+K+HPD++ GD AKF+EI EAY VL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 86 LDYDFTG 92
YD G
Sbjct: 63 AAYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
QDYY+IL V A + +IR Y++LA+K+HPD++ GD AKF+EI EAY VL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 86 LDYDFTG 92
YD G
Sbjct: 63 AAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
QDYY+IL V A + +IR Y++LA+K+HPD++ GD AKF+EI EAY VL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 86 LDYDFTG 92
YD G
Sbjct: 63 AAYDQYG 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
DYY+IL V A+DE ++ YR+LALK+HPDK++ A A F+ I AYAVLS+P+KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA-FKAIGTAYAVLSNPEKRK 66
Query: 87 DYD 89
YD
Sbjct: 67 QYD 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
+DYY+ L + A+DE+I+ YR+ AL++HPDK N + KF+EI EAY VLSDP KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 86 LDYDFTG 92
+D G
Sbjct: 62 EIFDRYG 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKH--NGDSAVTAKFQEINEAYAVLSDPDK 84
DYY++L+V A+ E I+ YRKLALKWHPDK+ N + A +F+++ EAY VLSD K
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEA-ERRFKQVAEAYEVLSDAKK 68
Query: 85 RLDYDFTG 92
R YD G
Sbjct: 69 RDIYDRYG 76
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 88
Y +L +D +AT + I+ +YRKLALK+HPDK+ + KF+EIN A+A+L+D KR Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 89 DFTG 92
D G
Sbjct: 80 DKYG 83
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 88
Y +L V A +++++ YRK ALK+HPDK GD T KF+EI+EA+ +L+DP KR Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 89 DFTGI 93
D G+
Sbjct: 68 DQYGL 72
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA--KFQEINEAYAVLSDP 82
+YY++L V A+ E I+ YRKLAL+WHPDK N D+ A KF+ ++EAY VLSD
Sbjct: 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 83 DKRLDYDFTGI 93
KR YD G
Sbjct: 67 KKRSLYDRAGC 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
YY IL V A++ +I+ + KLA+K+HPDK N AKF+EI EAY LSD ++R +
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDK-NKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 88 YDFTG 92
YD G
Sbjct: 68 YDTLG 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
YY +L V +AT E+++ YRKLALK+HPDK+ + KF++I++AY VLSD KR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYEVLSDAKKREL 64
Query: 88 YDFTG 92
YD G
Sbjct: 65 YDKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
YY +L V DA+D +++ YRK+ALK+HPDK N D A +F++I++AY VLSD KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDK-NPDGA--EQFKQISQAYEVLSDEKKRQI 66
Query: 88 YDFTG 92
YD G
Sbjct: 67 YDQGG 71
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
DYY+IL V +A+ ++I+ Y +LA K+HPD + D KF ++ EAY VLSD KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 87 DYDFTG 92
YD G
Sbjct: 68 QYDAYG 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA 77
+S S ++F D Y++L V A+ I+ Y+KLA +WHPDK N D +F +I++AY
Sbjct: 10 QSLSALDF-DPYRVLGVSRTASQADIKKAYKKLAREWHPDK-NKDPGAEDRFIQISKAYE 67
Query: 78 VLSDPDKRLDYDFTG 92
+LS+ +KR +YD G
Sbjct: 68 ILSNEEKRTNYDHYG 82
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA--KFQEINEAYAVLSDPDKR 85
YY+IL+V A+ + I+ YR+ AL+WHPDK N D+ A KF+E+ EAY VLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDK-NPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 86 LDYDFTG 92
YD G
Sbjct: 63 EIYDRYG 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDK 84
Q++Y +L V A+ +IR ++KLALK HPDK+ + F +IN AY VL D D
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60
Query: 85 RLDYDFTG 92
R YD G
Sbjct: 61 RKKYDKYG 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
Q++Y +L V A+ +IR ++KLALK HPDK+ + F +IN AY VL D D R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 86 LDYDFTG 92
YD G
Sbjct: 81 KKYDKYG 87
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 2 EGNDNNTQ-KEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 60
E N+N+ Q +E + ++ + +DYYKIL V +A ++I YRKLAL+WHPD
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 61 G---DSAVTAKFQEINEAYAVLSDPDKRLDYD 89
KF +I A VLSDP+ R +D
Sbjct: 417 NEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 2 EGNDNNTQ-KEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 60
E N+N+ Q +E + ++ + +DYYKIL V +A ++I YRKLAL+WHPD
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 61 G---DSAVTAKFQEINEAYAVLSDPDKRLDYD 89
KF +I A VLSDP+ R +D
Sbjct: 417 NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
ME +DYY IL V + I+ YR+LA K+HPD + A AKF+++ EA+ VL D
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDA-EAKFKDLAEAWEVLKDE 83
Query: 83 DKRLDYD 89
+R +YD
Sbjct: 84 QRRAEYD 90
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPD 83
E +DYY I+ V + I+ YR+LA K+HPD A A+F+E+ EA+ VLSD
Sbjct: 3 ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDA-EARFKEVAEAWEVLSDEQ 61
Query: 84 KRLDYD 89
+R +YD
Sbjct: 62 RRAEYD 67
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
+DYY +L D ++ E+I ++ AL+ HPDKH + FQ++ +A +L++ + R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 86 LDYD 89
YD
Sbjct: 80 ARYD 83
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 88
Y +L V AT +I+ Y + +HPD+++G + +F I++AY VL R Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 89 D 89
D
Sbjct: 80 D 80
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA------VTAKFQEINEA 75
M +D+Y IL D A ++ Y+KL L +HPDK + D KF EI++A
Sbjct: 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQA 65
Query: 76 YAVLSDPDKRLDYDF 90
+ +L + + + +YD
Sbjct: 66 WKILGNEETKREYDL 80
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA------KFQEINEAYAVL 79
+D+Y IL D A ++ Y+KL L +HPDK + D KF EI++A+ +L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 80 SDPDKRLDYDF 90
+ + + YD
Sbjct: 76 GNEETKKKYDL 86
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 29 YKILEVDYDATD-EKIRLNYRKLALKWHPDK-HNGDSAVTA--KFQEINEAYAVLSDPDK 84
Y +LEV+ + D +K+ YR LA K HPD+ N + + A +F+ I AY L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 85 RLDYDF 90
+ +YD+
Sbjct: 78 KTNYDY 83
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 42 KIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 97
++R YR+L + HPD S ++ +N+AY L DP +R Y + ID
Sbjct: 34 RLRKEYRQLQAQHHPDMAQQGSEQSST---LNQAYHTLKDPLRRSQYMLKLLRNID 86
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 42 KIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 97
++R YR+L + HPD S ++ +N+AY L DP +R Y + ID
Sbjct: 26 RLRKEYRQLQAQHHPDMAQQGSEQSST---LNQAYHTLKDPLRRSQYMLKLLRNID 78
>pdb|2RCQ|A Chain A, Crystal Strucure Of Human Apo Cellular Retinol Binding
Protein Ii (Crbp-Ii)
pdb|2RCT|A Chain A, Crystal Structure Of Human Holo Cellular Retinol-Binding
Protein Ii (Crbp-Ii)
Length = 141
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA 77
E SN F+ Y K L++D+ +RL K+ D N + T+ F
Sbjct: 13 EMESNENFEGYMKALDIDFATRKIAVRLTQTKVI---DQDGDNFKTKTTSTF-------- 61
Query: 78 VLSDPDKRLDYDFTGIYEIDKYTLR------EYLARFKGMILTCNGLGISHTSMWSQQL 130
+ D DFT E D+YT + L ++G +L C G W Q +
Sbjct: 62 ------RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWI 114
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 27 DYYKI--LEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVL 79
+Y+++ L + ++ + +R L ++HPD S + +IN+AY L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 80 SDPDKRLDY 88
DP +R +Y
Sbjct: 65 KDPLRRAEY 73
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 10 KEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKF 69
KE+ A R R++ +D + +L V A+ +++ YRKLA+ HPDK + A
Sbjct: 14 KEQADAIRRIRNS---KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFK 70
Query: 70 QEINEAYAVLSD 81
+N A+L +
Sbjct: 71 AVVNARTALLKN 82
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 27 DYYKI--LEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVL 79
DY+ + L Y + + L ++ L ++HPDK S A + IN+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 80 SDPDKRLDY 88
P R +Y
Sbjct: 62 RHPLMRAEY 70
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 38 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 77
T E+++ YRK L HPDK G + F E+N+A++
Sbjct: 61 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 103
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 38 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 77
T E+++ YRK L HPDK G + F E+N+A++
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWS 90
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 38 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 77
T E+++ YRK L HPDK G + F E+N+A++
Sbjct: 129 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 171
>pdb|1EII|A Chain A, Nmr Structure Of Holo Cellular Retinol-Binding Protein Ii
pdb|1B4M|A Chain A, Nmr Structure Of Apo Cellular Retinol-Binding Protein Ii,
24 Structures
pdb|1OPA|A Chain A, The Crystal Structures Of Holo-And Apo-Cellular Retinol
Binding Protein Ii
pdb|1OPA|B Chain B, The Crystal Structures Of Holo-And Apo-Cellular Retinol
Binding Protein Ii
pdb|1OPB|A Chain A, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
pdb|1OPB|B Chain B, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
pdb|1OPB|C Chain C, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
pdb|1OPB|D Chain D, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
Length = 134
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 15 ASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINE 74
+ E SN F+ Y K L++D+ +RL K+ ++ D N + + F
Sbjct: 7 GTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKIIVQ---DGDNFKTKTNSTF----- 58
Query: 75 AYAVLSDPDKRLDYDFTGIYEIDKYTLR------EYLARFKGMILTCNGLGISHTSMWSQ 128
+ D DFT E D++T + L ++G L C G W Q
Sbjct: 59 ---------RNYDLDFTVGVEFDEHTKGLDGRNVKTLVTWEGNTLVCVQKGEKENRGWKQ 109
>pdb|4EXZ|A Chain A, Crystal Structure Of The Q108k:k40l Mutant Of Cellular
Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.7 Angstrom Resolution
pdb|4EXZ|B Chain B, Crystal Structure Of The Q108k:k40l Mutant Of Cellular
Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.7 Angstrom Resolution
Length = 133
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 15 ASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINE 74
+ E SN F+ Y K L++D+ +RL L D N + T+ F
Sbjct: 6 GTWEMESNENFEGYMKALDIDFATRKIAVRLTQ---TLVIDQDGDNFKTKTTSTF----- 57
Query: 75 AYAVLSDPDKRLDYDFTGIYEIDKYTLR------EYLARFKGMILTCNGLGISHTSMWSQ 128
+ D DFT E D+YT + L ++G +L C G W +
Sbjct: 58 ---------RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKK 108
Query: 129 QL 130
+
Sbjct: 109 WI 110
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 93 IYEIDKYTLREYLARFKGMILTCNGLGISHTS 124
+Y D + L+ LAR G I+ C GISHT+
Sbjct: 256 VYLRDSFGLKTLLAR--GAIVRCPMAGISHTA 285
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 48 RKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
R+L LKWHPDK+ + + NE + L + RL+
Sbjct: 38 RRLYLKWHPDKNPENHDIA------NEVFKHLQNEINRLE 71
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 38 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 77
T E+++ YRK L HP K G + F E+N+A++
Sbjct: 46 VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 88
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 38 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 77
T E+++ YRK L HP K G + F E+N+A++
Sbjct: 45 VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,569,549
Number of Sequences: 62578
Number of extensions: 185468
Number of successful extensions: 321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 50
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)