Citrus Sinensis ID: 032522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MEGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETDDFADK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccccccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHcHccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
megndnntqkekmgasresrsnmefqDYYKILEVDYDATDEKIRLNYRKLALkwhpdkhngdsaVTAKFQEINEAYavlsdpdkrldydftgiyeiDKYTLREYLARFKGMILTCnglgishtsmwsqqltetddfadk
Flexible Loop (DISEMBL)
megndnntqkekmgasresrsnmefQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYavlsdpdkrldYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHtsmwsqqltetddfadk
Low Complexity Region (SEG)
MEGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETDDFADK
Disordered region (IsUnstruct)
************************FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMW*************
Disordered Region (DISOPRED)
**********************MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISH*****************
Disordered Region (DISEMBL)
********************SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETDDFADK
Disordered Region (DISPRO)
***********************EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETD*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETDDFADK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P50027	332	DnAJ-like protein slr0093	N/A	no	0.532	0.222	0.540	1e-16
A3DF24	386	Chaperone protein DnaJ OS	yes	no	0.460	0.165	0.609	3e-16
Q5SLW9	350	Chaperone protein DnaJ 1	yes	no	0.467	0.185	0.569	9e-16
Q72GN6	350	Chaperone protein DnaJ OS	yes	no	0.467	0.185	0.569	1e-15
P30725	374	Chaperone protein DnaJ OS	yes	no	0.503	0.187	0.514	1e-15
O34136	310	Chaperone protein DnaJ OS	yes	no	0.503	0.225	0.542	2e-15
B2TLZ8	373	Chaperone protein DnaJ OS	yes	no	0.482	0.179	0.507	3e-15
B2V2I6	373	Chaperone protein DnaJ OS	yes	no	0.482	0.179	0.507	4e-15
Q21CI1	379	Chaperone protein DnaJ OS	yes	no	0.446	0.163	0.548	5e-15
Q9UXR9	387	Chaperone protein DnaJ OS	N/A	no	0.453	0.162	0.593	6e-15

>sp|P50027|DNAJH_SYNY3 DnAJ-like protein slr0093 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0093 PE=4 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 55/74 (74%)

Query: 21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 80
          ++ +F+DYY+IL V   A++ +I+  +RKLALK+HPDK+ GD A   KF+EI+EAY VLS
Sbjct: 2  ASTDFKDYYQILGVTKTASEAEIKKQFRKLALKYHPDKNPGDKAAEEKFKEISEAYEVLS 61

Query: 81 DPDKRLDYDFTGIY 94
          DP+KR  YD  G Y
Sbjct: 62 DPEKRQKYDQFGRY 75

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 48/64 (75%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+IL VD  A+D +I+  YRKLA ++HPD + GD A  AKF+EINEAY VLSDP KR
Sbjct: 5  RDYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKR 64

Query: 86 LDYD 89
            YD
Sbjct: 65 ARYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDK 84
           +DYY IL V  +A+ E+I+  YR+LALK+HPD++ GD     +F+EINEAYAVLSDP K
Sbjct: 1  MKDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKK 60

Query: 85 RLDYD 89
          R  YD
Sbjct: 61 RAAYD 65

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDK 84
           +DYY IL V  +A+ E+I+  YR+LALK+HPD++ GD     +F+EINEAYAVLSDP K
Sbjct: 1  MKDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKK 60

Query: 85 RLDYD 89
          R  YD
Sbjct: 61 RAAYD 65

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

>sp|P30725|DNAJ_CLOAB Chaperone protein DnaJ OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaJ PE=2 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 53/70 (75%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L ++  A+D++I+  +RKLA+K+HPDK+ G+     KF+EINEAY VLSDP
Sbjct: 1  MANKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNRGNKEAEEKFKEINEAYQVLSDP 60

Query: 83 DKRLDYDFTG 92
          DK+ +YD  G
Sbjct: 61 DKKANYDRFG 70

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

>sp|O34136|DNAJ_DEIPM Chaperone protein DnaJ OS=Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) GN=dnaJ PE=3 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M ++DYY++L V   A+D  I+  YRKLA ++HPDK+ GD +   KF+EI EAYAVLSDP
Sbjct: 1  MAYKDYYEVLGVSRSASDSDIKSAYRKLAKQYHPDKNAGDESAAEKFKEIGEAYAVLSDP 60

Query: 83 DKRLDYDFTG 92
           KR  YD  G
Sbjct: 61 QKRQAYDQFG 70

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) (taxid: 693977)

>sp|B2TLZ8|DNAJ_CLOBB Chaperone protein DnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 52/67 (77%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L +   A+D++I+  +RKLA+K+HPDK+ G++    KF+EINEAY VLSDP
Sbjct: 1  MANKDYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDP 60

Query: 83 DKRLDYD 89
          +K+ +YD
Sbjct: 61 EKKSNYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium botulinum (strain Eklund 17B / Type B) (taxid: 508765)

>sp|B2V2I6|DNAJ_CLOBA Chaperone protein DnaJ OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dnaJ PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 52/67 (77%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L +   A+D++I+  +RKLA+K+HPDK+ G++    KF+EINEAY VLSDP
Sbjct: 1  MANKDYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDP 60

Query: 83 DKRLDYD 89
          +K+ +YD
Sbjct: 61 EKKSNYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767)

>sp|Q21CI1|DNAJ_RHOPB Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaJ PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
          YY+ LEVD  A D  ++  +RKLA+KWHPD++ GD++  ++F+EINEAY VL D DKR  
Sbjct: 8  YYETLEVDRSADDSSLKAAFRKLAMKWHPDRNPGDASSESRFKEINEAYEVLKDGDKRAA 67

Query: 88 YD 89
          YD
Sbjct: 68 YD 69

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Rhodopseudomonas palustris (strain BisB18) (taxid: 316056)

>sp|Q9UXR9|DNAJ_METTE Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+IL +  DAT E I+ +YRKLALK+HPD+ N +     KF+EI+EAYAVLSDP+KR
Sbjct: 5  RDYYEILGLSRDATPEDIKKSYRKLALKYHPDR-NKEPGAEEKFKEISEAYAVLSDPEKR 63

Query: 86 LDYD 89
            YD
Sbjct: 64 AQYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methanosarcina thermophila (taxid: 2210)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
225454698	123	PREDICTED: uncharacterized protein LOC10	0.877	0.991	0.778	2e-50
255558097	205	conserved hypothetical protein [Ricinus	0.741	0.502	0.912	4e-49
224146074	110	predicted protein [Populus trichocarpa]	0.791	1.0	0.761	3e-48
224124104	110	predicted protein [Populus trichocarpa]	0.791	1.0	0.753	5e-47
351724273	135	uncharacterized protein LOC100527491 [Gl	0.848	0.874	0.762	3e-46
15237385	128	chaperone DnaJ-domain containing protein	0.776	0.843	0.825	7e-46
297811807	139	DNAJ heat shock N-terminal domain-contai	0.776	0.776	0.825	8e-46
297828754	130	predicted protein [Arabidopsis lyrata su	0.820	0.876	0.747	1e-44
388503630	134	unknown [Medicago truncatula]	0.863	0.895	0.716	2e-44
388492874	134	unknown [Lotus japonicus] gi|388502822|g	0.899	0.932	0.669	2e-43

>gi|225454698|ref|XP_002271034.1| PREDICTED: uncharacterized protein LOC100244367 [Vitis vinifera] gi|297737272|emb|CBI26473.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 107/122 (87%)

Query: 18  ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA 77
           ES  +   +DYYK+LEVDYDAT+EKI+LNYR+LALKWHPDKH GD+AVT KFQ INEAY 
Sbjct: 2   ESNDSSTHKDYYKVLEVDYDATNEKIKLNYRRLALKWHPDKHKGDNAVTEKFQLINEAYK 61

Query: 78  VLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETDDFA 137
           VLSDP KRLDYD TG YEIDKYTLREYL RFKGMILTCNGLGISHTS+W+QQL +T+D +
Sbjct: 62  VLSDPAKRLDYDLTGNYEIDKYTLREYLTRFKGMILTCNGLGISHTSIWTQQLMDTNDHS 121

Query: 138 DK 139
           DK
Sbjct: 122 DK 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558097|ref|XP_002520077.1| conserved hypothetical protein [Ricinus communis] gi|223540841|gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 94/103 (91%)

Query: 23  MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
           ME  DYYKILEVDYDATDEKIR NY KLALKWHPDKH GDSAVTAKFQEINEAY VLSDP
Sbjct: 1   MEISDYYKILEVDYDATDEKIRFNYLKLALKWHPDKHQGDSAVTAKFQEINEAYGVLSDP 60

Query: 83  DKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSM 125
            KR DYDFTGIYEIDKYTL EYLARFKGMILTCNGLGISHTSM
Sbjct: 61  AKRSDYDFTGIYEIDKYTLGEYLARFKGMILTCNGLGISHTSM 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146074|ref|XP_002325870.1| predicted protein [Populus trichocarpa] gi|222862745|gb|EEF00252.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 101/126 (80%), Gaps = 16/126 (12%)

Query: 1   MEGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 60
           MEGN+N TQK                DYYKILEVDYDATDEKIRLNYR+LALKWHPDKH 
Sbjct: 1   MEGNENTTQK----------------DYYKILEVDYDATDEKIRLNYRRLALKWHPDKHK 44

Query: 61  GDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGI 120
           GD+AVT KFQEINEAY VL DPDKR DYD TGIYEIDKYTLREYL RFKGMILTCNGLGI
Sbjct: 45  GDNAVTTKFQEINEAYNVLRDPDKRFDYDLTGIYEIDKYTLREYLTRFKGMILTCNGLGI 104

Query: 121 SHTSMW 126
            +TS+W
Sbjct: 105 GNTSIW 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124104|ref|XP_002319246.1| predicted protein [Populus trichocarpa] gi|222857622|gb|EEE95169.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 101/126 (80%), Gaps = 16/126 (12%)

Query: 1   MEGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 60
           ME N+N TQK                DYYKILEVDYDATDEKIRLNYR LALKWHPDKH 
Sbjct: 1   MEDNENTTQK----------------DYYKILEVDYDATDEKIRLNYRMLALKWHPDKHL 44

Query: 61  GDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGI 120
           GDSAVTAKFQ+INEAY VLSDP KR +YD TG+YEIDKYT+REYLARFKGMILTCNGLGI
Sbjct: 45  GDSAVTAKFQDINEAYKVLSDPAKRFEYDLTGVYEIDKYTVREYLARFKGMILTCNGLGI 104

Query: 121 SHTSMW 126
           S+TS W
Sbjct: 105 SNTSTW 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724273|ref|NP_001236796.1| uncharacterized protein LOC100527491 [Glycine max] gi|255632470|gb|ACU16585.1| unknown [Glycine max]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 100/118 (84%)

Query: 22  NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 81
           N   +DYYK+LEV+YDATDE I+LNYR+LALKWHPDKH GDSAVTAKFQEINEAY VLSD
Sbjct: 18  NTNPKDYYKVLEVEYDATDENIKLNYRRLALKWHPDKHGGDSAVTAKFQEINEAYNVLSD 77

Query: 82  PDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTETDDFADK 139
           P KRLDYD TGI EI+KY+L+EYLARFK MILTCNGLGI+ T  WSQQL E  +  DK
Sbjct: 78  PTKRLDYDLTGICEIEKYSLQEYLARFKSMILTCNGLGINQTDRWSQQLIENFESLDK 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237385|ref|NP_197168.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|14326539|gb|AAK60314.1|AF385723_1 AT5g16650/MTG13_10 [Arabidopsis thaliana] gi|10176974|dbj|BAB10192.1| unnamed protein product [Arabidopsis thaliana] gi|21553806|gb|AAM62899.1| unknown [Arabidopsis thaliana] gi|23505921|gb|AAN28820.1| At5g16650/MTG13_10 [Arabidopsis thaliana] gi|332004939|gb|AED92322.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 95/109 (87%), Gaps = 1/109 (0%)

Query: 26  QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
           +DYYKILEVDYDAT+E IRLNYRKLALKWHPDKH GDSA T KFQEINEAY VL DP KR
Sbjct: 10  KDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAYNVLMDPAKR 69

Query: 86  LDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISH-TSMWSQQLTET 133
            +YDFTGIYEI KYTLREYLARFKGMILTCNGLGIS  +S W+ QL ET
Sbjct: 70  FEYDFTGIYEIHKYTLREYLARFKGMILTCNGLGISQSSSPWTHQLAET 118

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811807|ref|XP_002873787.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319624|gb|EFH50046.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 95/109 (87%), Gaps = 1/109 (0%)

Query: 26  QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
           +DYYKILEVDYDAT+E IRLNYRKLALKWHPDKH GDSA T KFQEINEAY VL DP KR
Sbjct: 10  KDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAYNVLMDPAKR 69

Query: 86  LDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISH-TSMWSQQLTET 133
            +YDFTGIYEI KYTLREYLARFKGMILTCNGLGIS  +S W+ QL ET
Sbjct: 70  FEYDFTGIYEIHKYTLREYLARFKGMILTCNGLGISQSSSPWTHQLAET 118

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828754|ref|XP_002882259.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328099|gb|EFH58518.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 99/115 (86%), Gaps = 1/115 (0%)

Query: 26  QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
           +DYYKILEVDYDAT+E I+++YRKLALKWHPDKHNGD+  T+KFQEINEAY VL DP  R
Sbjct: 8   KDYYKILEVDYDATEEMIKVSYRKLALKWHPDKHNGDTVATSKFQEINEAYNVLMDPALR 67

Query: 86  LDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISH-TSMWSQQLTETDDFADK 139
            +YD TGIYEI KYTLREYLARFKGMILTCNGLGISH +S W+QQL E ++  D+
Sbjct: 68  FEYDLTGIYEIHKYTLREYLARFKGMILTCNGLGISHSSSPWTQQLAEGNNTTDE 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503630|gb|AFK39881.1| unknown [Medicago truncatula]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 102/120 (85%)

Query: 13  MGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEI 72
           + A+ +  +N + +DYYK+LE++YDATDE IRLNYR+LALKWHPDKH  DSAVTAKFQEI
Sbjct: 8   LMAATDDNNNNKPKDYYKVLEIEYDATDEDIRLNYRRLALKWHPDKHKDDSAVTAKFQEI 67

Query: 73  NEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQLTE 132
           NEAY VL+DP KRLDYD TG  EI+KY+L+EYLARFKGMILTCNGLGI++   WSQQL E
Sbjct: 68  NEAYNVLNDPAKRLDYDLTGACEIEKYSLQEYLARFKGMILTCNGLGINNEDRWSQQLIE 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492874|gb|AFK34503.1| unknown [Lotus japonicus] gi|388502822|gb|AFK39477.1| unknown [Lotus japonicus]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 105/130 (80%), Gaps = 5/130 (3%)

Query: 12  KMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKH--NGDSAVTAKF 69
           +M A+ ++  N   +DYYK+LEVDYDATDE I+L+YR+LA+KWHPDKH  +GD  VTAKF
Sbjct: 8   RMAAAEQTNPN---KDYYKVLEVDYDATDEIIKLSYRRLAMKWHPDKHKGDGDGDVTAKF 64

Query: 70  QEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMWSQQ 129
           QEINEAY VLSDP KRLDYD TG  E++KY+L+EYLARFKGMILTCNGLGI+H   WSQ 
Sbjct: 65  QEINEAYNVLSDPAKRLDYDLTGTCEVEKYSLQEYLARFKGMILTCNGLGINHADRWSQH 124

Query: 130 LTETDDFADK 139
           L E  + AD+
Sbjct: 125 LIENFESADE 134

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2174170	128	AT5G16650 [Arabidopsis thalian	0.776	0.843	0.825	5.6e-45
TAIR|locus:505006286	119	AT2G33735 [Arabidopsis thalian	0.726	0.848	0.485	2.9e-23
UNIPROTKB|Q74H78	294	GSU0014 "DnaJ-related molecula	0.503	0.238	0.571	2.9e-16
TIGR_CMR|GSU_0014	294	GSU_0014 "phage prohead protea	0.503	0.238	0.571	2.9e-16
TAIR|locus:2097638	323	AT3G08910 [Arabidopsis thalian	0.474	0.204	0.567	1.2e-15
TAIR|locus:2121368	348	AT4G28480 [Arabidopsis thalian	0.474	0.189	0.567	1.8e-15
TAIR|locus:2179127	335	AT5G01390 [Arabidopsis thalian	0.474	0.197	0.552	2.6e-15
UNIPROTKB|Q5EA26	358	DNAJC18 "DnaJ homolog subfamil	0.618	0.240	0.472	3.5e-15
GENEDB_PFALCIPARUM|PFE0055c	402	PFE0055c "heat shock protein,	0.561	0.194	0.524	5.1e-15
UNIPROTKB|Q8I489	402	PFE0055c "Heat shock protein,	0.561	0.194	0.524	5.1e-15

TAIR|locus:2174170 AT5G16650 [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 90/109 (82%), Positives = 95/109 (87%)

Query:    26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
             +DYYKILEVDYDAT+E IRLNYRKLALKWHPDKH GDSA T KFQEINEAY VL DP KR
Sbjct:    10 KDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAYNVLMDPAKR 69

Query:    86 LDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSM-WSQQLTET 133
              +YDFTGIYEI KYTLREYLARFKGMILTCNGLGIS +S  W+ QL ET
Sbjct:    70 FEYDFTGIYEIHKYTLREYLARFKGMILTCNGLGISQSSSPWTHQLAET 118

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:505006286 AT2G33735 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 50/103 (48%), Positives = 75/103 (72%)

Query:    24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPD 83
             +++D+YK+LE++ DA+D++IR ++ +LALKWHPDK   + + T++FQEINEAY VLSDP 
Sbjct:    19 DYKDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEEDSATSRFQEINEAYQVLSDPI 78

Query:    84 KRLDYDFTGIYEIDKYTLREYLARFKGMILTCNGLGISHTSMW 126
              R +YD   +  I ++   E L  +K +ILTCNGLG+ H  +W
Sbjct:    79 ARQEYDKKRMRRIYEHNT-ELLNEYKELILTCNGLGVKHY-LW 119

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q74H78 GSU0014 "DnaJ-related molecular chaperone" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
             M   DYY+ L +   AT+E+I+  YRKLA+ +HPDK+ GD+A   KF+EINEAYAVLSDP
Sbjct:     1 MAQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDP 60

Query:    83 DKRLDYDFTG 92
              KR  YD  G
Sbjct:    61 QKRAQYDQFG 70

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0014 GSU_0014 "phage prohead protease, HK97 family/dnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
             M   DYY+ L +   AT+E+I+  YRKLA+ +HPDK+ GD+A   KF+EINEAYAVLSDP
Sbjct:     1 MAQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDP 60

Query:    83 DKRLDYDFTG 92
              KR  YD  G
Sbjct:    61 QKRAQYDQFG 70

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097638 AT3G08910 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 38/67 (56%), Positives = 49/67 (73%)

Query:    27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKH-NGDSAVTAKFQEINEAYAVLSDPDKR 85
             DYYK+L+VD +A D+ ++  YRKLA+KWHPDK+ N      AKF++I+EAY VLSDP KR
Sbjct:     4 DYYKVLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63

Query:    86 LDYDFTG 92
               YD  G
Sbjct:    64 AIYDQYG 70

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 38/67 (56%), Positives = 48/67 (71%)

Query:    27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKH-NGDSAVTAKFQEINEAYAVLSDPDKR 85
             DYYK+L+VD  A D+ ++  YRKLA+KWHPDK+ N      AKF++I+EAY VLSDP KR
Sbjct:     4 DYYKVLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63

Query:    86 LDYDFTG 92
               YD  G
Sbjct:    64 AVYDQYG 70

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2179127 AT5G01390 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query:    27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKH-NGDSAVTAKFQEINEAYAVLSDPDKR 85
             D+YK+LEVD  A D++++  YRKLA+KWHPDK+ N      AKF++I+EAY VLSDP KR
Sbjct:     4 DFYKVLEVDRSANDDELKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKR 63

Query:    86 LDYDFTG 92
               Y+  G
Sbjct:    64 AIYEQYG 70

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q5EA26 DNAJC18 "DnaJ homolog subfamily C member 18" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 43/91 (47%), Positives = 60/91 (65%)

Query:     2 EGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG 61
             EGN   T+++ +G  R  +     ++YY+IL V  DA+DE+++  YRKLALK+HPDK+  
Sbjct:    61 EGNSTYTEEQLLGVQRIKKC----RNYYEILGVSRDASDEELKKAYRKLALKFHPDKNCA 116

Query:    62 DSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 92
               A  A F+ I  A+AVLS+PDKRL YD  G
Sbjct:   117 PGATDA-FKAIGNAFAVLSNPDKRLRYDEYG 146

GO:0016021 "integral to membrane" evidence=IEA

GENEDB_PFALCIPARUM|PFE0055c PFE0055c "heat shock protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 196 (74.1 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 43/82 (52%), Positives = 54/82 (65%)

Query:    14 GASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKH-NGDSAVTA--KFQ 70
             G+SRES S  +  DYY +L +  D T + I+  YRKLA+KWHPDKH N +  V A  KF+
Sbjct:    68 GSSRES-SKTDETDYYAVLGLTKDCTQDDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFK 126

Query:    71 EINEAYAVLSDPDKRLDYDFTG 92
              I EAY VLSD +KR +YD  G
Sbjct:   127 LIGEAYEVLSDEEKRKNYDLFG 148

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I489 PFE0055c "Heat shock protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 196 (74.1 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 43/82 (52%), Positives = 54/82 (65%)

Query:    14 GASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKH-NGDSAVTA--KFQ 70
             G+SRES S  +  DYY +L +  D T + I+  YRKLA+KWHPDKH N +  V A  KF+
Sbjct:    68 GSSRES-SKTDETDYYAVLGLTKDCTQDDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFK 126

Query:    71 EINEAYAVLSDPDKRLDYDFTG 92
              I EAY VLSD +KR +YD  G
Sbjct:   127 LIGEAYEVLSDEEKRKNYDLFG 148

GO:0020011 "apicoplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00190466	hypothetical protein (110 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02610008	hypothetical protein (132 aa)			•						0.504
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.503
	gw1.I.6196.1	hypothetical protein (99 aa)			•						0.503
	grail3.0261001401	hypothetical protein (124 aa)			•						0.503
	eugene3.00860035	hypothetical protein (705 aa)			•						0.503
	fgenesh4_pg.C_scaffold_6803000001	hypothetical protein (161 aa)			•						0.502
	eugene3.00130164	hypothetical protein (660 aa)			•						0.502
	eugene3.00120231	hypothetical protein (668 aa)			•						0.502
	eugene3.00070571	hypothetical protein (172 aa)			•						0.502
	estExt_fgenesh4_pm.C_LG_I0291	SubName- Full=Putative uncharacterized protein; (666 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam00226	63	pfam00226, DnaJ, DnaJ domain	6e-28
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-27
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	9e-27
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	5e-25
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-23
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-22
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-22
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-21
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-21
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-21
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-21
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	6e-21
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	7e-21
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-20
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-20
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	9e-20
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-19
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-19
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-19
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	6e-19
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-18
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-18
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	3e-18
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-17
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-17
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	3e-17
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-16
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-15
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	3e-15
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-14
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-14
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-14
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	4e-14
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-13
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	6e-13
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	7e-11
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-07
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	8e-07
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-04
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	3e-04
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	0.002

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 97.6 bits (244), Expect = 6e-28
 Identities = 42/63 (66%), Positives = 50/63 (79%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY+IL V  DA+DE+I+  YRKLALK+HPDK+ GD A   KF+EINEAY VLSDP+KR 
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 87 DYD 89
           YD
Sbjct: 61 IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  102 bits (258), Expect = 4e-27
 Identities = 35/67 (52%), Positives = 49/67 (73%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L V  +A++++I+  YRKLA+K+HPD++ GD     KF+EI EAY VLSDP
Sbjct: 1  MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60

Query: 83 DKRLDYD 89
           KR  YD
Sbjct: 61 QKRAAYD 67

Length = 371

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (255), Expect = 9e-27
 Identities = 39/67 (58%), Positives = 50/67 (74%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+IL V  DA++E+I+  YRKLA K+HPD++ GD     KF+EINEAY VLSDP+KR
Sbjct: 4  RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63

Query: 86 LDYDFTG 92
            YD  G
Sbjct: 64 AAYDQFG 70

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 97.3 bits (243), Expect = 5e-25
 Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY+IL V  DA++E+I+  YRKLA K+HPD+ N D     KF+EINEAY VLSDP+KR 
Sbjct: 1  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDR-NKDKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 87 DYD 89
           YD
Sbjct: 60 QYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 84.9 bits (211), Expect = 4e-23
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 81
          DYY IL V  DA+DE+I+  YRKLALK+HPDK+  D     KF+EINEAY VLSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 37/67 (55%), Positives = 48/67 (71%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
             +DYY+IL VD +AT+E+I+  YR+LA K+HPD + GD     KF+EINEAY +LSDP
Sbjct: 2  AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61

Query: 83 DKRLDYD 89
           KR  YD
Sbjct: 62 QKRAQYD 68

Length = 386

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 83.4 bits (207), Expect = 2e-22
 Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAV-TAKFQEINEAYAVLSDPDK 84
           DYY+IL V  DA+ ++I+  YRKLALK+HPDK+ GD      KF+EINEAY VLSDP+K
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 88.3 bits (219), Expect = 1e-21
 Identities = 34/67 (50%), Positives = 50/67 (74%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L ++  A+D++I+  +RKLA+K+HPDK+ G+     KF+EINEAY VLSDP
Sbjct: 1  MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60

Query: 83 DKRLDYD 89
           K+  YD
Sbjct: 61 QKKAQYD 67

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 88.2 bits (219), Expect = 1e-21
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY +L V  +A+D +I+  YRKLA + HPD  N D     KF+EI+ AY VLSDP+KR 
Sbjct: 4  DYYGLLGVSRNASDAEIKRAYRKLARELHPDV-NPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 87 DYDFTG 92
            D  G
Sbjct: 63 IVDLGG 68

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 87.9 bits (218), Expect = 2e-21
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY+IL V  DA++E+I+ +YRKLA+K+HPD++ GD      F+E  EAY VLSDP
Sbjct: 1  MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 83 DKRLDYDFTG 92
           KR  YD  G
Sbjct: 61 KKRGIYDQYG 70

Length = 366

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 86.8 bits (215), Expect = 4e-21
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+IL +  DA+ E I+  YRKLA+K+HPDK N +     KF+EI+EAYAVLSD +KR
Sbjct: 5  RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK-NKEPDAEEKFKEISEAYAVLSDAEKR 63

Query: 86 LDYDFTGIYEID 97
            YD  G   ID
Sbjct: 64 AQYDRFGHAGID 75

Length = 377

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 86.4 bits (214), Expect = 6e-21
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYYK+L V  DAT+ +I+  YRKLA ++HPD + GD+    +F+EI+EAY VLSD  KR
Sbjct: 9  KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKR 68

Query: 86 LDYD 89
           +YD
Sbjct: 69 KEYD 72

Length = 389

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 86.4 bits (214), Expect = 7e-21
 Identities = 35/66 (53%), Positives = 46/66 (69%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY IL V   A+ E+I+  YRKLA+K+HPDK+ GD+    +F+E++EAY VLSD  KR 
Sbjct: 2  DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 87 DYDFTG 92
           YD  G
Sbjct: 62 SYDRYG 67

Length = 391

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 84.5 bits (209), Expect = 3e-20
 Identities = 35/67 (52%), Positives = 46/67 (68%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
           E +DYY++L V   AT ++I+  YRK A+++HPDK+ GD     KF+E  EAY VLSDP
Sbjct: 2  AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 83 DKRLDYD 89
          DKR  YD
Sbjct: 62 DKRSRYD 68

Length = 386

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 83.6 bits (207), Expect = 7e-20
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +D+YK L V  DA+ E+I+  YRKLA + HPD + GD A   +F+ ++EA+ VLSDP KR
Sbjct: 9  KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 86 LDYDFT 91
           +YD T
Sbjct: 69 KEYDET 74

Length = 392

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 82.9 bits (205), Expect = 9e-20
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSD 81
           E +DYY+IL V  +AT E+I+  Y++L  +WHPD+H  +      KF+EI EAY VLSD
Sbjct: 1  REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60

Query: 82 PDKRLDYD 89
          P KR  YD
Sbjct: 61 PQKRAMYD 68

Length = 369

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 82.3 bits (203), Expect = 1e-19
 Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA-VTAKFQEINEAYAVLSDPDK 84
          +DYYKIL VD +A+ E I+  +R+LA KWHPD H G+ A    KF+EI+EAY VLSDP K
Sbjct: 3  KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 85 RLDYDFTG 92
          R  YD TG
Sbjct: 63 RRQYDQTG 70

Length = 365

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M ++DYY IL V  +A+ ++I+  ++KLA K+HPD  N       KF+EINEAY VLSDP
Sbjct: 1  MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDV-NKSPGAEEKFKEINEAYTVLSDP 59

Query: 83 DKRLDYDFTG 92
          +KR  YD  G
Sbjct: 60 EKRRIYDTYG 69

Length = 291

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 81.7 bits (202), Expect = 3e-19
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L V  DA++++I+  YRKLAL++HPD++  +     KF+E  EAY VL D 
Sbjct: 1  MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60

Query: 83 DKRLDYD 89
          +KR  YD
Sbjct: 61 EKRARYD 67

Length = 373

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 81.0 bits (200), Expect = 6e-19
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+IL V  +AT E+I+  YR+LA K+HPD  N +     KF+EINEAY VLSDP+KR
Sbjct: 3  KDYYEILGVSRNATQEEIKKAYRRLARKYHPD-FNKNPEAEEKFKEINEAYQVLSDPEKR 61

Query: 86 LDYDFTG 92
            YD  G
Sbjct: 62 KLYDQFG 68

Length = 382

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY++L V   A  ++I+  YRKLALK+HPDK+  +      F+E+NEAY VLS+ DKR
Sbjct: 3  RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62

Query: 86 LDYD 89
            YD
Sbjct: 63 RRYD 66

Length = 397

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY++L V   A+ ++I+  YRKLALK+HPD+ N +     KF +INEAYAVLSD +KR 
Sbjct: 3  DYYELLGVSRTASADEIKSAYRKLALKYHPDR-NKEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 87 DYDFTG 92
           YD  G
Sbjct: 62 HYDRFG 67

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M   +YY  L V  DA+ ++I+  YRKL+ K+HPD  N +     K++E+ EAY  LSDP
Sbjct: 1  MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDI-NKEPGAEEKYKEVQEAYETLSDP 59

Query: 83 DKRLDYD 89
           KR  YD
Sbjct: 60 QKRAAYD 66

Length = 380

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY+IL V  DA  ++++  YR+LA K+HPD  N +     +F+EIN AY VLSDP+ R 
Sbjct: 4  DYYEILGVSRDADKDELKRAYRRLARKYHPDV-NKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 87 DYD 89
           YD
Sbjct: 63 RYD 65

Length = 374

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 35/70 (50%), Positives = 44/70 (62%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  + YY IL V   A DE+I+  YRKLA+K+HPDK+ G+     KF+E  EAY +L DP
Sbjct: 1  MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60

Query: 83 DKRLDYDFTG 92
           KR  YD  G
Sbjct: 61 KKRQAYDQFG 70

Length = 372

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
           E +DYY++L VD +A  ++I+  YRKLA K+HPD  + +     KF+EI+EAYAVLSD 
Sbjct: 2  AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDV-SEEEGAEEKFKEISEAYAVLSDD 60

Query: 83 DKRLDYD 89
          +KR  YD
Sbjct: 61 EKRQRYD 67

Length = 378

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L V   A+ ++I+  YRKL+ K+HPD  N +     KF+EI+EAY VLSD 
Sbjct: 1  MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDI-NKEEGADEKFKEISEAYEVLSDD 59

Query: 83 DKRLDYD 89
           KR  YD
Sbjct: 60 QKRAQYD 66

Length = 376

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 36/65 (55%), Positives = 45/65 (69%)

Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
          YY+ILEV+  +  E I+ +YRKLALK+HPD++ GD     KF+ INEAY VLSD  KR  
Sbjct: 5  YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 88 YDFTG 92
          YD  G
Sbjct: 65 YDRYG 69

Length = 369

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 5/80 (6%)

Query: 13 MGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEI 72
              R  R  ++ +  Y++L +  D T  +I+  YRKLA+K HPDK  GD     KF+EI
Sbjct: 16 FDGGRRKR-EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK-GGDP---EKFKEI 70

Query: 73 NEAYAVLSDPDKRLDYDFTG 92
          + AY VLSDP+KR  YD  G
Sbjct: 71 SRAYEVLSDPEKRKIYDEYG 90

Length = 421

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 36/64 (56%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKR 85
          DYY+IL V  +A+ E+I+  YRKLALK+HPD++ GD      KF+EINEAY +LSDP++R
Sbjct: 7  DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 86 LDYD 89
           +YD
Sbjct: 67 AEYD 70

Length = 237

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          ME +DYY I+ V      + I+  YR+LA K+HPD      A  A+F+E+ EA+ VLSD 
Sbjct: 1  MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDA-EARFKEVAEAWEVLSDE 59

Query: 83 DKRLDYD 89
           +R +YD
Sbjct: 60 QRRAEYD 66

Length = 306

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M  +DYY++L VD +A+ ++++  YRKLA K+HPD +    A   KF+E+ EAY  LSDP
Sbjct: 1  MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDA-EDKFKEVKEAYDTLSDP 59

Query: 83 DKRLDYDFTG 92
           K+  YD  G
Sbjct: 60 QKKAHYDQFG 69

Length = 371

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY++L +D DA +++I+  +RKLA K+HPD++    A +  F EINEA  VLS+P KR
Sbjct: 2  RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASI-FAEINEANDVLSNPKKR 60

Query: 86 LDYDFTGIYEIDK 98
           +YD  G   +D+
Sbjct: 61 ANYDKYGHDGVDR 73

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          M+ +DYY++L V   A++++IR  YRKLA ++HPD  N       K  EINEA  VL D 
Sbjct: 1  MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDL-NKSPDAHDKMVEINEAADVLLDK 59

Query: 83 DKRLDYD 89
          DKR  YD
Sbjct: 60 DKRKQYD 66

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 63.9 bits (155), Expect = 6e-13
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+IL +   A+ ++I+  YRK+A+K+HPDK+ G+    + F+E  EAY VL D +KR
Sbjct: 3  RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62

Query: 86 LDYDFTG 92
            YD  G
Sbjct: 63 AQYDRFG 69

Length = 365

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 58.1 bits (140), Expect = 7e-11
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          QDYY+IL V   A+   ++  Y KLA ++HPD  +   A   KF+EIN AY VL D  KR
Sbjct: 3  QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDA-EKKFKEINAAYDVLKDEQKR 61

Query: 86 LDYDFTG 92
            YD  G
Sbjct: 62 AAYDRFG 68

Length = 372

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 5/79 (6%)

Query: 27  DYYKILEVDYDATDEKIRLNYRKLALKWHPDK-----HNGDSAVTAKFQEINEAYAVLSD 81
           D Y+IL +D D ++  I+  YR L++K+HPDK     +   S    K++ I +AY +L+D
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158

Query: 82  PDKRLDYDFTGIYEIDKYT 100
             +R +Y   G  +  ++T
Sbjct: 159 KKRRENYLNYGTPDSPQHT 177

Length = 610

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 44.5 bits (105), Expect = 8e-07
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 22  NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVL 79
            M   + YKIL +   A+ E+IR  +++L L+ HPD  NG S   A   ++NEA  +L
Sbjct: 61  PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPD--NGGSTYIA--SKVNEAKDLL 114

Length = 116

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 28  YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
           +Y IL V  +A  ++I   Y KLA  ++P K +G +    KF++INEAY +L D DK+  
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKM 633

Query: 88  YDFTG 92
           Y+  G
Sbjct: 634 YNKFG 638

Length = 1136

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 17  RESRSNMEFQDYYKILEVD---YDATDEKIRLNYRKLALKWHPDKHNGDSAVTAK--FQE 71
           RE   N +  D Y +L +      A   +I   ++K   K+HPDK            F+ 
Sbjct: 34  REDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKL 93

Query: 72  INEAYAVLSDPDKRLDYD 89
           I +A  VL D   RL YD
Sbjct: 94  IQKAREVLGDRKLRLQYD 111

Length = 379

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 1   MEGNDNNTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDK 58
           M+      Q++  G  ++++     +D YK+L V     D++I+  YRKL  + HPDK
Sbjct: 175 MQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232

Length = 267

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 32 LEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVL--SDPDKRLDYD 89
          L +        +R  Y +   ++HPDK  GD     K + +N  Y  L       R  + 
Sbjct: 19 LPMAAWGNLPLMRKAYLRKCKEYHPDK-GGDE---EKMKRLNSLYKKLQEGVKSARQSFG 74

Query: 90 FTGIYEIDKY 99
               EI  Y
Sbjct: 75 TQDSSEIPTY 84

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.96
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.94
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.89
PRK14288	369	chaperone protein DnaJ; Provisional	99.88
PRK14296	372	chaperone protein DnaJ; Provisional	99.87
PRK14286	372	chaperone protein DnaJ; Provisional	99.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.86
PRK14279	392	chaperone protein DnaJ; Provisional	99.86
PRK14287	371	chaperone protein DnaJ; Provisional	99.85
PRK14282	369	chaperone protein DnaJ; Provisional	99.85
PRK14294	366	chaperone protein DnaJ; Provisional	99.85
PRK14297	380	chaperone protein DnaJ; Provisional	99.84
PRK14301	373	chaperone protein DnaJ; Provisional	99.84
PRK14285	365	chaperone protein DnaJ; Provisional	99.84
PRK14277	386	chaperone protein DnaJ; Provisional	99.84
PRK14276	380	chaperone protein DnaJ; Provisional	99.84
PRK14295	389	chaperone protein DnaJ; Provisional	99.84
PRK14283	378	chaperone protein DnaJ; Provisional	99.84
PRK14299	291	chaperone protein DnaJ; Provisional	99.84
PRK10767	371	chaperone protein DnaJ; Provisional	99.83
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14280	376	chaperone protein DnaJ; Provisional	99.83
PRK14284	391	chaperone protein DnaJ; Provisional	99.83
PRK14298	377	chaperone protein DnaJ; Provisional	99.83
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14281	397	chaperone protein DnaJ; Provisional	99.82
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.82
PRK14291	382	chaperone protein DnaJ; Provisional	99.82
PRK14292	371	chaperone protein DnaJ; Provisional	99.82
PRK14278	378	chaperone protein DnaJ; Provisional	99.82
PRK14289	386	chaperone protein DnaJ; Provisional	99.81
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK14290	365	chaperone protein DnaJ; Provisional	99.81
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.8
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.8
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.79
PRK14300	372	chaperone protein DnaJ; Provisional	99.79
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.78
PRK14293	374	chaperone protein DnaJ; Provisional	99.78
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.76
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.74
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.72
PHA03102	153	Small T antigen; Reviewed	99.71
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.71
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.71
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.7
PRK05014	171	hscB co-chaperone HscB; Provisional	99.63
PRK00294	173	hscB co-chaperone HscB; Provisional	99.62
PRK01356	166	hscB co-chaperone HscB; Provisional	99.61
PRK03578	176	hscB co-chaperone HscB; Provisional	99.6
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.56
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.56
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.54
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.52
PTZ00100	116	DnaJ chaperone protein; Provisional	99.49
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.46
PHA02624	647	large T antigen; Provisional	99.45
PRK01773	173	hscB co-chaperone HscB; Provisional	99.36
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.23
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.21
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.21
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.18
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	99.12
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.56
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.51
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.74
KOG0431	453	consensus Auxilin-like protein and related protein	97.53
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.11
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.77
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.41
PF13446	62	RPT: A repeated domain in UCH-protein	91.05
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	90.52
KOG0724	335	consensus Zuotin and related molecular chaperones	89.35
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	89.04

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-29  Score=206.86  Aligned_cols=102  Identities=41%  Similarity=0.646  Sum_probs=85.1

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccccccHH
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLR  102 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~~~~~  102 (139)
                      |..+|||+||||+++||.+|||+|||+||++||||+++.+++|+++|+.|++||+||+||++|+.||++|...++.....
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            35689999999999999999999999999999999999888999999999999999999999999999998877621111


Q ss_pred             HHHHHHhcchhcccCCCCCCchhhhhhhccC
Q 032522          103 EYLARFKGMILTCNGLGISHTSMWSQQLTET  133 (139)
Q Consensus       103 ~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~  133 (139)
                              .+ .+.++|.+..++|+.||+++
T Consensus        81 --------g~-g~~~fgg~~~DIF~~~FgGg  102 (371)
T COG0484          81 --------GF-GFGGFGGDFGDIFEDFFGGG  102 (371)
T ss_pred             --------CC-CcCCCCCCHHHHHHHhhcCC
Confidence                    10 22333335788999999644

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.5e-27  Score=188.75  Aligned_cols=76  Identities=47%  Similarity=0.789  Sum_probs=71.9

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      ...+|||+||||+++|+..|||+|||+||+++|||+|+++|.|.+.|+.|+.||+||+||++|+.||.+|..++..
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~   88 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD   88 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence            4458999999999999999999999999999999999999999999999999999999999999999999777664

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2e-23  Score=168.42  Aligned_cols=69  Identities=51%  Similarity=0.761  Sum_probs=64.4

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ...||+||||+++||.+|||+|||+||++|||||++.   +.++|++|..||+||+||++|..||++|..++
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            3589999999999999999999999999999999876   67999999999999999999999999997554

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=4.6e-23  Score=169.35  Aligned_cols=71  Identities=51%  Similarity=0.797  Sum_probs=67.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .|||+||||+++||.+|||+|||+||++||||+++.++.++++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~   73 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL   73 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence            69999999999999999999999999999999987677889999999999999999999999999987654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.2e-22  Score=166.95  Aligned_cols=72  Identities=43%  Similarity=0.644  Sum_probs=66.4

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ..+|||+||||+++|+.++||+|||+||++||||+++ .+.|+++|++|++||+||+||.+|..||.+|..++
T Consensus         2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~   73 (372)
T PRK14296          2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF   73 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence            3479999999999999999999999999999999986 46788999999999999999999999999987554

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3e-22  Score=164.67  Aligned_cols=72  Identities=47%  Similarity=0.790  Sum_probs=67.6

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++.++++.++|++|++||+||+||.+|..||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence            479999999999999999999999999999999987777889999999999999999999999999987654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.86  E-value=3.7e-22  Score=166.35  Aligned_cols=72  Identities=43%  Similarity=0.695  Sum_probs=64.8

Q ss_pred             CCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        21 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ..+..+|||+||||+++||.++||+|||+||++||||+++.    .++|++|++||+||+||.+|..||.+|..++
T Consensus        23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~   94 (421)
T PTZ00037         23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGL   94 (421)
T ss_pred             ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence            34556899999999999999999999999999999999752    4899999999999999999999999887543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=4.3e-22  Score=164.76  Aligned_cols=69  Identities=48%  Similarity=0.713  Sum_probs=65.7

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++..+.+.++|++|++||+||+||++|+.||.+|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            479999999999999999999999999999999988777889999999999999999999999999875

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.8e-21  Score=160.09  Aligned_cols=71  Identities=42%  Similarity=0.731  Sum_probs=65.7

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ..|||+||||+++|+.++||+|||+||++||||+++ .++++++|+.|++||+||+||.+|+.||.+|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~   73 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP   73 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence            469999999999999999999999999999999976 46788999999999999999999999999987544

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.4e-21  Score=160.49  Aligned_cols=73  Identities=48%  Similarity=0.805  Sum_probs=66.8

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ..+|||+||||+++|+.++||+|||+||++||||+++.. ..++++|++|++||+||+||.+|..||.+|..+.
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~   75 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE   75 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence            347999999999999999999999999999999998754 5688999999999999999999999999886554

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.4e-21  Score=160.32  Aligned_cols=73  Identities=49%  Similarity=0.774  Sum_probs=68.2

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ..+|||+||||+++|+.++||+|||+||++||||+++..+.++++|+.|++||+||+||.+|..||.+|..++
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~   74 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL   74 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence            4579999999999999999999999999999999988777889999999999999999999999999987654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2.6e-21  Score=159.47  Aligned_cols=72  Identities=47%  Similarity=0.870  Sum_probs=67.5

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++..+.++++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~   74 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF   74 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence            369999999999999999999999999999999988777889999999999999999999999999987654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2.8e-21  Score=159.00  Aligned_cols=72  Identities=43%  Similarity=0.762  Sum_probs=67.4

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||+++|+.++||+|||+||+++|||+++..++++++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~   74 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV   74 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence            479999999999999999999999999999999988777888999999999999999999999999887654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3e-21  Score=158.46  Aligned_cols=71  Identities=42%  Similarity=0.756  Sum_probs=67.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      +|||+||||+++||.++||+|||+|+++||||+++..+.+.++|++|++||+||+||.+|..||.+|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~   73 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF   73 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence            69999999999999999999999999999999988777888999999999999999999999999987544

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.2e-21  Score=159.24  Aligned_cols=72  Identities=53%  Similarity=0.854  Sum_probs=67.4

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++..+.++++|+.|++||+||+||.+|..||.+|..++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            369999999999999999999999999999999988777889999999999999999999999999887554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.4e-21  Score=158.84  Aligned_cols=72  Identities=40%  Similarity=0.708  Sum_probs=66.3

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      .+|||+||||+++||.++||+|||+||++||||+++ .+.++++|+.|++||+||+||.+|..||.+|..+++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~   74 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN   74 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence            479999999999999999999999999999999986 456889999999999999999999999999876543

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.4e-21  Score=158.63  Aligned_cols=72  Identities=49%  Similarity=0.765  Sum_probs=66.8

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhc----cCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDF----TGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~----~g~~~~   96 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++..+.++++|+.|++||+||+||.+|..||.    +|..++
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~   83 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF   83 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence            479999999999999999999999999999999987777789999999999999999999999998    776544

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.8e-21  Score=158.43  Aligned_cols=73  Identities=49%  Similarity=0.763  Sum_probs=67.1

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      +.+|||+||||+++|+.+|||+|||+||++||||+++. +.+.++|+.|++||+||+||.+|..||.+|..++.
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~   75 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD   75 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence            45799999999999999999999999999999999864 67899999999999999999999999999876543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.9e-21  Score=152.48  Aligned_cols=70  Identities=47%  Similarity=0.802  Sum_probs=65.3

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .+|||+||||+++||.++||+|||+||+++|||+++ .+.+.++|+.|++||+||+||.+|..||.+|..+
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            479999999999999999999999999999999976 5678899999999999999999999999988754

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=7.9e-21  Score=156.13  Aligned_cols=72  Identities=49%  Similarity=0.853  Sum_probs=67.2

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||+++|+.++||+|||+||+++|||+++..+.+.++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~   74 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF   74 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence            479999999999999999999999999999999987777788999999999999999999999999886554

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=8.8e-21  Score=151.31  Aligned_cols=87  Identities=40%  Similarity=0.605  Sum_probs=78.1

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccccccHHHH
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREY  104 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~~~~~~~  104 (139)
                      ..|||+||||+.+++..+|++|||..+++|||||||++|.|.++|+.+.+||+||+|+..|..||..+..........+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~   83 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ   83 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence            46999999999999999999999999999999999999999999999999999999999999999998777766555555


Q ss_pred             HHHHhcc
Q 032522          105 LARFKGM  111 (139)
Q Consensus       105 ~~~~~~~  111 (139)
                      +..|...
T Consensus        84 ~~~~r~~   90 (296)
T KOG0691|consen   84 ADGFRKK   90 (296)
T ss_pred             HHHHHHH
Confidence            5555554

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2e-20  Score=154.79  Aligned_cols=104  Identities=34%  Similarity=0.541  Sum_probs=82.2

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc----
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI----   96 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~----   96 (139)
                      ....++||+||||..+++..+||++||+||++||||++|.. .++.++|+.|+.||+|||||..|.+||.....-+    
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~   83 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN   83 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCC
Confidence            45568999999999999999999999999999999997765 5799999999999999999999999998655333    


Q ss_pred             --ccccHHHHHHHHhcchhcccCCCCCCchhhh
Q 032522           97 --DKYTLREYLARFKGMILTCNGLGISHTSMWS  127 (139)
Q Consensus        97 --~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~  127 (139)
                        ......+.+..|..  ....|++....++|.
T Consensus        84 s~~~~~~~dlf~ff~~--~~y~gy~~~~~gfy~  114 (508)
T KOG0717|consen   84 SDTGVQIEDLFQFFTS--SCYIGYENTSAGFYR  114 (508)
T ss_pred             CccccchHHHHHHhhh--hhhcccccccchhHH
Confidence              23556666666554  344555555444443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=9e-21  Score=156.11  Aligned_cols=72  Identities=43%  Similarity=0.710  Sum_probs=66.1

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++ .+.++++|++|++||+||+||.+|..||.+|..++.
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~   74 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN   74 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence            469999999999999999999999999999999976 456889999999999999999999999999876543

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.1e-20  Score=156.31  Aligned_cols=70  Identities=50%  Similarity=0.791  Sum_probs=66.3

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        27 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      |||+||||+++|++++||+|||+||++||||++++.+.+.++|+.|++||+||+||.+|..||++|..++
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   71 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP   71 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence            8999999999999999999999999999999998777899999999999999999999999999987543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.1e-20  Score=155.74  Aligned_cols=72  Identities=53%  Similarity=0.830  Sum_probs=66.0

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      .+|||+||||+++|+.++||+|||+||++||||+++ .+.++++|+.|++||+||+||.+|..||.+|..+++
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~   75 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID   75 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence            369999999999999999999999999999999976 466889999999999999999999999999876543

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1e-20  Score=147.77  Aligned_cols=74  Identities=47%  Similarity=0.718  Sum_probs=69.0

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      -...|+|+||||+++++.++||++||+|+++||||+++++|++..+|+.|+.||+||+||.+|..||.+|..++
T Consensus        28 ~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   28 VIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             cchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            34568999999999999999999999999999999999889999999999999999999999999999876554

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.1e-20  Score=156.53  Aligned_cols=72  Identities=46%  Similarity=0.775  Sum_probs=67.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      +|||+||||+++|+.++||+|||+||+++|||+++..+.++++|+.|++||+||+||.+|..||.+|..++.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~   74 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG   74 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence            699999999999999999999999999999999887777889999999999999999999999998876543

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.82  E-value=1.8e-20  Score=117.78  Aligned_cols=63  Identities=49%  Similarity=0.890  Sum_probs=59.6

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhCCchhhhhhh
Q 032522           27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYD   89 (139)
Q Consensus        27 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~iL~dp~~R~~YD   89 (139)
                      |||+||||+++++.++||++|+++++++|||+++... .+.+.|..|++||++|++|.+|..||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999977665 68899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=154.91  Aligned_cols=70  Identities=51%  Similarity=0.799  Sum_probs=65.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      +|||+||||+++|+.++||+|||+||+++|||+++. +.+.++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~   72 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF   72 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence            699999999999999999999999999999999864 6688999999999999999999999999886543

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3.2e-20  Score=152.52  Aligned_cols=69  Identities=49%  Similarity=0.827  Sum_probs=64.5

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .|||+||||+++++.++||+|||+|++++|||+++ .+.+.++|+.|++||+||+||.+|..||.+|..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            59999999999999999999999999999999976 5678899999999999999999999999988654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=154.83  Aligned_cols=68  Identities=47%  Similarity=0.718  Sum_probs=64.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIY   94 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~   94 (139)
                      +|||+||||+++|+.++||+|||+||++||||+++ .++++++|+.|++||+||+||.+|..||.+|..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            69999999999999999999999999999999986 567889999999999999999999999998863

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.8e-20  Score=152.80  Aligned_cols=72  Identities=49%  Similarity=0.776  Sum_probs=67.4

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||+++|+.+|||+|||+||+++|||+++..+++.++|+.|++||+||+||.+|..||.+|..++
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~   75 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV   75 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence            479999999999999999999999999999999998777899999999999999999999999999886543

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.3e-20  Score=146.88  Aligned_cols=72  Identities=44%  Similarity=0.764  Sum_probs=65.9

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      +...|||+||||+++|+..|||+||++|++++|||.+... .+.++|++|.+||+||+|+++|..||..+..+
T Consensus        40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3344999999999999999999999999999999997654 89999999999999999999999999988754

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=6.2e-20  Score=150.62  Aligned_cols=71  Identities=55%  Similarity=0.944  Sum_probs=65.9

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      +|||+||||+++|+.++||+|||+|++++|||+++... .+.++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~   74 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF   74 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence            69999999999999999999999999999999987654 688999999999999999999999999887544

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.80  E-value=7.6e-20  Score=162.17  Aligned_cols=82  Identities=33%  Similarity=0.449  Sum_probs=73.2

Q ss_pred             ccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        19 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      +.......+||+||||+++|+..+||+|||+||+++|||+++.. .+..+|+.|.+||+||+||.+|..||.+|..++..
T Consensus       566 ~t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        566 PTIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             ccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            35566678999999999999999999999999999999998765 67889999999999999999999999999887765


Q ss_pred             ccH
Q 032522           99 YTL  101 (139)
Q Consensus        99 ~~~  101 (139)
                      ..+
T Consensus       645 ~~~  647 (1136)
T PTZ00341        645 VNF  647 (1136)
T ss_pred             CCc
Confidence            443

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.3e-19  Score=139.26  Aligned_cols=95  Identities=38%  Similarity=0.619  Sum_probs=76.7

Q ss_pred             cccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD--SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        18 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .|......+|+|+||||.++|+..+|++||+++++++|||+++..  .++.+.|++|+.||+||+|.++|..||..|...
T Consensus         6 ~~~~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen    6 ECTGSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             hccccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            344455667999999999999999999999999999999998532  468899999999999999999999999998654


Q ss_pred             c-ccccHHHHHHHHhcch
Q 032522           96 I-DKYTLREYLARFKGMI  112 (139)
Q Consensus        96 ~-~~~~~~~~~~~~~~~~  112 (139)
                      . ...-..+|+.+|..++
T Consensus        86 d~~~d~~~~~~e~~~~iy  103 (264)
T KOG0719|consen   86 DESGDIDEDWLEFWRAIY  103 (264)
T ss_pred             CccchhhhHHHHHHHHHH
Confidence            2 2233445555555543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.79  E-value=1.2e-19  Score=148.25  Aligned_cols=69  Identities=55%  Similarity=0.894  Sum_probs=64.2

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        27 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      |||+||||+++|+.++||+|||+||+++|||+++ .+.+.++|+.|++||+||+||.+|..||.+|..+.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~   69 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF   69 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence            7999999999999999999999999999999986 55688999999999999999999999999887654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.3e-19  Score=149.04  Aligned_cols=70  Identities=43%  Similarity=0.675  Sum_probs=64.8

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      +|||+||||+++||.++||+|||++++++|||+++ .+.++++|+.|++||+||+|+.+|..||.+|..++
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   72 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF   72 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence            69999999999999999999999999999999976 45678899999999999999999999999886544

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.3e-19  Score=150.28  Aligned_cols=76  Identities=43%  Similarity=0.688  Sum_probs=69.2

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD---SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~---~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      ..+..|||.+|+|+++||.+|||+|||++++.|||||..++   ..|++.|++|.+||+||+||.+|..||.+|..+++
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            34456999999999999999999999999999999998644   35889999999999999999999999999998886

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.78  E-value=2.3e-19  Score=144.17  Aligned_cols=69  Identities=39%  Similarity=0.672  Sum_probs=63.7

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      ..+|||+||||+++++.++||+|||+||+++|||+++ .+.+.++|+.|++||++|+||.+|..||.++.
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          2 ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            3479999999999999999999999999999999965 45688999999999999999999999998764

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.7e-19  Score=146.47  Aligned_cols=70  Identities=44%  Similarity=0.793  Sum_probs=64.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .|||+||||+++++.++||+|||+|++++|||+++ .+.++++|+.|++||+||+||.+|..||.+|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~   72 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV   72 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence            69999999999999999999999999999999976 45688999999999999999999999999886543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.76  E-value=2.3e-18  Score=106.62  Aligned_cols=58  Identities=59%  Similarity=0.956  Sum_probs=53.9

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChhHHHHHHHHHHHHHHhCCch
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG-DSAVTAKFQEINEAYAVLSDPD   83 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~-~~~a~~~f~~i~~Ay~iL~dp~   83 (139)
                      +|||+||||+++++.++||++|+++++++|||+++. .+.+.+.|+.|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999875 5678899999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.74  E-value=7.9e-18  Score=102.34  Aligned_cols=55  Identities=64%  Similarity=0.979  Sum_probs=51.3

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCC
Q 032522           27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD   81 (139)
Q Consensus        27 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~d   81 (139)
                      |||+||||++.++.++||++|+++++++|||+++....+.+.|+.|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999976546688999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.72  E-value=7.6e-18  Score=136.63  Aligned_cols=77  Identities=43%  Similarity=0.699  Sum_probs=68.5

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS---AVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~---~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      ....+|||+||||.++++..||.+|||++|.+||||.+....   .|+++|.-|..|-+||+||++|+.|| .|.+.++.
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD-nGeDPLD~  468 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD-NGEDPLDP  468 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc-CCCCCCCh
Confidence            566799999999999999999999999999999999987654   48899999999999999999999999 45556554


Q ss_pred             c
Q 032522           99 Y   99 (139)
Q Consensus        99 ~   99 (139)
                      .
T Consensus       469 E  469 (504)
T KOG0624|consen  469 E  469 (504)
T ss_pred             h
Confidence            3

>PHA03102 Small T antigen; Reviewed

Probab=99.71  E-value=1.4e-17  Score=121.73  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=62.9

Q ss_pred             ccchhhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           25 FQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        25 ~~d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      .+.+|+||||+++|  |..+||+|||++++++|||++++    .++|+.|++||++|+|+.+|..||.+|......
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~   75 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE   75 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence            36899999999999  99999999999999999999542    479999999999999999999999998765443

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=3.1e-17  Score=124.87  Aligned_cols=74  Identities=31%  Similarity=0.518  Sum_probs=67.0

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ...-|+|+||||+++++.+|||+|||+|++++||||++.....++.|..|.+||+.|+|+..|..|..+|....
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            34469999999999999999999999999999999987667788899999999999999999999999885433

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.71  E-value=1.5e-17  Score=145.00  Aligned_cols=71  Identities=45%  Similarity=0.786  Sum_probs=65.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      +|||+||||+++|+..+||+|||+|++++|||+++. +.+..+|+.|++||++|+||.+|..||.+|..+..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            699999999999999999999999999999999765 66788999999999999999999999998876654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.2e-17  Score=122.22  Aligned_cols=69  Identities=52%  Similarity=0.898  Sum_probs=64.6

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-HHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA-VTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~-a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      ....++|+||||+++++..+|++|||++++++|||+++..+. +.+.|+.|++||+||+|+..|..||..
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            345799999999999999999999999999999999987774 899999999999999999999999975

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=7.2e-16  Score=114.82  Aligned_cols=66  Identities=27%  Similarity=0.522  Sum_probs=58.3

Q ss_pred             cchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           26 QDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        26 ~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      .|||+||||++.  ++..+|+++||++++++|||+....+.     +.+.+..|++||++|+||.+|..|+..
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            389999999995  788999999999999999999765532     566899999999999999999999863

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.62  E-value=1.2e-15  Score=113.80  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=61.0

Q ss_pred             CCccchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           23 MEFQDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      |+..|||++|||++.  ++..+|+++||++++++|||++.+.+.     +.+.+..|++||+||+||.+|..|+..
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~   76 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA   76 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            456899999999986  678999999999999999999866543     556899999999999999999999963

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.61  E-value=1.6e-15  Score=112.54  Aligned_cols=66  Identities=27%  Similarity=0.455  Sum_probs=57.3

Q ss_pred             cchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           26 QDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        26 ~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~---a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      .|||+||||++.  ++..+|+++||++++++|||++.+..+   +...+..|++||+||+||.+|..|+..
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            599999999986  789999999999999999999764322   334578999999999999999999764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.60  E-value=2.9e-15  Score=112.02  Aligned_cols=65  Identities=25%  Similarity=0.419  Sum_probs=57.6

Q ss_pred             cchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHH-----HHHHHHHHHHHHhCCchhhhhhhc
Q 032522           26 QDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSAVT-----AKFQEINEAYAVLSDPDKRLDYDF   90 (139)
Q Consensus        26 ~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~a~-----~~f~~i~~Ay~iL~dp~~R~~YD~   90 (139)
                      .|||+||||++.  ++..+|+++||++++++|||+++..+...     +.+..|++||++|+||.+|..|..
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            699999999985  68999999999999999999987655443     346899999999999999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4.2e-15  Score=115.60  Aligned_cols=107  Identities=38%  Similarity=0.510  Sum_probs=78.9

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhhhhccCccccccccHHH
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLRE  103 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~~~~~~  103 (139)
                      ..|+|.||+|.+.++..+|++||+++++++|||+++.. ..+.++|++|.+||++|+|+.+|..||.++......     
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~-----   76 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG-----   76 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccccc-----
Confidence            46999999999999999999999999999999997655 245558999999999999999999999999744443     


Q ss_pred             HHHHHhcchh--cccCCCCCCchhhhhhhccCCCCc
Q 032522          104 YLARFKGMIL--TCNGLGISHTSMWSQQLTETDDFA  137 (139)
Q Consensus       104 ~~~~~~~~~~--~~~g~g~~~~~~~~~~~~~~~~f~  137 (139)
                       ...+...+.  .....-..+...|..+|+..++|.
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  111 (306)
T KOG0714|consen   77 -GGSFSSSFTSELFYFLFRKPDKDFYEFFGVSSPFS  111 (306)
T ss_pred             -CCCCCCCCCCCcceeccCchhhhHHHHhCCCCCCc
Confidence             000000000  001223344567888888777765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4.1e-15  Score=122.55  Aligned_cols=70  Identities=47%  Similarity=0.806  Sum_probs=65.2

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      ..+++|||.||||...++..+||+|||++++.+|||++... .+++.+|+.|.+||.||+||.+|..||..
T Consensus       369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            56678999999999999999999999999999999998766 67899999999999999999999999963

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=6.5e-15  Score=122.22  Aligned_cols=69  Identities=32%  Similarity=0.511  Sum_probs=64.8

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      +.+|+|.+|||+.+++.++||+.||++|...|||||. .+.|++.|+.++.||++|+|+.+|..||....
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~  301 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK  301 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence            3689999999999999999999999999999999987 78899999999999999999999999997543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=7.9e-15  Score=114.40  Aligned_cols=69  Identities=30%  Similarity=0.541  Sum_probs=62.5

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      ..+|+|+||||.++++..+|.+|||+||+++|||++.+. ++.+.|+.|..||++|.|.+.|..||-...
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-e~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-ESKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-hhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            458999999999999999999999999999999998654 456899999999999999999999996543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.49  E-value=5.6e-14  Score=98.33  Aligned_cols=55  Identities=35%  Similarity=0.463  Sum_probs=49.3

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhC
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS   80 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~   80 (139)
                      .|..+++|+||||+++++.++||++||++++++|||+.+ .   .+.|++|++||++|.
T Consensus        61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~  115 (116)
T PTZ00100         61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence            566789999999999999999999999999999999843 2   468899999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.46  E-value=1e-13  Score=109.69  Aligned_cols=60  Identities=35%  Similarity=0.541  Sum_probs=53.3

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------hhHHHHHHHHHHHHHHhCC
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-------SAVTAKFQEINEAYAVLSD   81 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-------~~a~~~f~~i~~Ay~iL~d   81 (139)
                      .+...++|+||||++++|.++||++||+|++++|||+..+.       +.+.++|+.|++||++|+.
T Consensus       196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999996432       2478899999999999974

>PHA02624 large T antigen; Provisional

Probab=99.45  E-value=1.5e-13  Score=118.53  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=65.6

Q ss_pred             ccchhhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhh--hcc---Cccccc
Q 032522           25 FQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY--DFT---GIYEID   97 (139)
Q Consensus        25 ~~d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~Y--D~~---g~~~~~   97 (139)
                      .+++|+||||++++  +..+||+|||++++++|||+.+    +.++|++|++||++|+|+.+|..|  |..   +.....
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v~~~~   85 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEIPTYG   85 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhcccccccccCCCCCc
Confidence            46999999999999  9999999999999999999953    257999999999999999999999  432   111223


Q ss_pred             cccHHHHHHHHhc
Q 032522           98 KYTLREYLARFKG  110 (139)
Q Consensus        98 ~~~~~~~~~~~~~  110 (139)
                      ....++|+..|+.
T Consensus        86 ~~~w~~ww~~f~~   98 (647)
T PHA02624         86 TPEWEQWWEEFNE   98 (647)
T ss_pred             cccHHHHHHHhhh
Confidence            4455666666653

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=1.9e-12  Score=96.65  Aligned_cols=65  Identities=25%  Similarity=0.390  Sum_probs=57.6

Q ss_pred             cchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhCCchhhhhhhc
Q 032522           26 QDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDF   90 (139)
Q Consensus        26 ~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~   90 (139)
                      .|||++|||++.  .+...+++.|+.+.+++|||+....+.     +.+.-..||+||.+|+||.+|..|=.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            699999999985  899999999999999999999876653     44567799999999999999999965

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.23  E-value=8.6e-12  Score=103.95  Aligned_cols=72  Identities=35%  Similarity=0.582  Sum_probs=64.1

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG-----DSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~-----~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      ..-|+|+|||++.+++..+||++||+|+.++||||.+.     .++.++.++.|++||..|+|...|+.|-.+|...
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            34599999999999999999999999999999999654     2367889999999999999999999999887543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.21  E-value=3.2e-11  Score=88.74  Aligned_cols=56  Identities=30%  Similarity=0.530  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHHhCCchhhhhhhccC
Q 032522           37 DATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVLSDPDKRLDYDFTG   92 (139)
Q Consensus        37 ~as~~eIk~ayr~la~~~HPDk~~~~~-----~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g   92 (139)
                      ..+..+|+++||++++++|||+++..+     .+...+..|++||++|+||.+|..|+...
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l   62 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL   62 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            357899999999999999999975543     25678999999999999999999998754

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.6e-11  Score=95.72  Aligned_cols=94  Identities=28%  Similarity=0.378  Sum_probs=75.0

Q ss_pred             cCCCCccchhhhccCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHHHhCCchhhhhhhccCc-
Q 032522           20 RSNMEFQDYYKILEVDY---DATDEKIRLNYRKLALKWHPDKHN--GDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI-   93 (139)
Q Consensus        20 ~~~~~~~d~Y~iLgv~~---~as~~eIk~ayr~la~~~HPDk~~--~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~-   93 (139)
                      ...++..|+|.+|||+.   .+++.+|.++.++.+.+||||+..  ++-.....|+.|+.||+||+|+.+|..||.... 
T Consensus        37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~  116 (379)
T COG5269          37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD  116 (379)
T ss_pred             hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence            45677899999999975   689999999999999999999962  233567899999999999999999999997432 


Q ss_pred             ---cccccccHHHHHHHHhcchh
Q 032522           94 ---YEIDKYTLREYLARFKGMIL  113 (139)
Q Consensus        94 ---~~~~~~~~~~~~~~~~~~~~  113 (139)
                         ......+..+|++.+..+|-
T Consensus       117 advppp~~~t~~~Ffe~w~pvFe  139 (379)
T COG5269         117 ADVPPPRIYTPDEFFEVWEPVFE  139 (379)
T ss_pred             cCCCCccCCCchhHHHHHHHHHH
Confidence               22345667777776665543

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4.2e-11  Score=90.74  Aligned_cols=81  Identities=28%  Similarity=0.442  Sum_probs=68.9

Q ss_pred             chHHHhhcccccccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhh
Q 032522            7 NTQKEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKR   85 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R   85 (139)
                      ++.+.++.+...+.+..=.-|+|+||.|.|..+.++||+.||+|++..|||+|+.+ +.|...|--|.+||.+|-|+..|
T Consensus        34 Lts~~qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r  113 (250)
T KOG1150|consen   34 LTSKQQIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR  113 (250)
T ss_pred             cCcHHHHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            44555566666656666668999999999999999999999999999999999988 67889999999999999998755


Q ss_pred             hh
Q 032522           86 LD   87 (139)
Q Consensus        86 ~~   87 (139)
                      ..
T Consensus       114 kr  115 (250)
T KOG1150|consen  114 KR  115 (250)
T ss_pred             HH
Confidence            43

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-10  Score=89.32  Aligned_cols=107  Identities=21%  Similarity=0.386  Sum_probs=76.2

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHH-HhCCchhhhhhhccCcccccccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA-VLSDPDKRLDYDFTGIYEIDKYT  100 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~-iL~dp~~R~~YD~~g~~~~~~~~  100 (139)
                      +-+...+|.||||..+|+.++++.||.+|++++|||. +......++|.+|.+||. ||+..-.+  -+.....+.+..+
T Consensus        43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpds-gs~~adaa~f~qideafrkvlq~~~~k--tn~~qn~~edee~  119 (342)
T KOG0568|consen   43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDS-GSEEADAARFIQIDEAFRKVLQEKFAK--TNARQNIGEDEED  119 (342)
T ss_pred             HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCC-CCccccHHHHHHHHHHHHHHHHHHHHH--hhhccccccchhh
Confidence            3345689999999999999999999999999999998 455667789999999998 77632221  1111122222233


Q ss_pred             HHHH-----HHHHhcchhcccCCCCCCchhhhhhhcc
Q 032522          101 LREY-----LARFKGMILTCNGLGISHTSMWSQQLTE  132 (139)
Q Consensus       101 ~~~~-----~~~~~~~~~~~~g~g~~~~~~~~~~~~~  132 (139)
                      .++|     .++.+.. +++.|.|++...+.+.+|+.
T Consensus       120 ~~efdik~kapqhrhy-ls~egig~gtp~qrekhyqq  155 (342)
T KOG0568|consen  120 AEEFDIKHKAPQHRHY-LSFEGIGFGTPFQREKHYQQ  155 (342)
T ss_pred             HHHhhhccCCchhhhh-hcccCcccCCchHHHHHHHH
Confidence            3333     3444543 78899999998888877753

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=9.9e-08  Score=86.65  Aligned_cols=58  Identities=40%  Similarity=0.573  Sum_probs=49.5

Q ss_pred             cCCCCccchhhhccCCC----CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhC
Q 032522           20 RSNMEFQDYYKILEVDY----DATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS   80 (139)
Q Consensus        20 ~~~~~~~d~Y~iLgv~~----~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~   80 (139)
                      +..|...+.|+||.|+-    .-.++.||++|++||.+|||||||   +..++|.++++||+.|.
T Consensus      1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence            44677789999999974    335689999999999999999976   45689999999999997

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.7e-07  Score=63.44  Aligned_cols=57  Identities=28%  Similarity=0.336  Sum_probs=49.0

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP   82 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp   82 (139)
                      .|.+++.-.||||+++++.+.||.|+|++....|||+.+ .|   -.-.+|++|+++|...
T Consensus        52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GG-SP---YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGG-SP---YLASKINEAKDLLEGT  108 (112)
T ss_pred             ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCC-CH---HHHHHHHHHHHHHhcc
Confidence            567778889999999999999999999999999999955 33   4555799999999754

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=5.9e-05  Score=55.32  Aligned_cols=68  Identities=24%  Similarity=0.481  Sum_probs=55.2

Q ss_pred             CCccchhhhccCC--CCCCHHHHHHHHHHHHHHhCCCCCCCC-----hhHHHHHHHHHHHHHHhCCchhhhhhhc
Q 032522           23 MEFQDYYKILEVD--YDATDEKIRLNYRKLALKWHPDKHNGD-----SAVTAKFQEINEAYAVLSDPDKRLDYDF   90 (139)
Q Consensus        23 ~~~~d~Y~iLgv~--~~as~~eIk~ayr~la~~~HPDk~~~~-----~~a~~~f~~i~~Ay~iL~dp~~R~~YD~   90 (139)
                      ....+||.++|..  ....+..++.-|....+++|||+....     ..+.+.-..|++||.+|.||-+|..|=.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3447999999764  456778888899999999999984322     1467788999999999999999999965

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.53  E-value=0.00011  Score=62.51  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             ccCCCCccchhhhcc----------------CCCCCCHHHHHHHHHHHHHHhCCCCCCCCh
Q 032522           19 SRSNMEFQDYYKILE----------------VDYDATDEKIRLNYRKLALKWHPDKHNGDS   63 (139)
Q Consensus        19 ~~~~~~~~d~Y~iLg----------------v~~~as~~eIk~ayr~la~~~HPDk~~~~~   63 (139)
                      .|+..+..|...||.                +..-+++++||++|||.++..||||.+..+
T Consensus       365 ~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~g  425 (453)
T KOG0431|consen  365 RWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKG  425 (453)
T ss_pred             HhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCc
Confidence            345555666666654                345689999999999999999999987664

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00038  Score=51.84  Aligned_cols=54  Identities=39%  Similarity=0.603  Sum_probs=46.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-------hHHHHHHHHHHHHHHh
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-------AVTAKFQEINEAYAVL   79 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-------~a~~~f~~i~~Ay~iL   79 (139)
                      .+.|.+|++....+..+|+++|+++....|||+-....       .+.++++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            79999999999999999999999999999999843221       4677888899998754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0013  Score=49.01  Aligned_cols=69  Identities=25%  Similarity=0.413  Sum_probs=53.3

Q ss_pred             hhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           28 YYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        28 ~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      +..++|.++.  ...+.++..|+.+.+.+|||+....+.     +.+.+..++.||.+|.+|..|..|=..-..+.
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~   78 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL   78 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence            4445555543  356789999999999999999765543     34578899999999999999999987655444

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.41  E-value=0.008  Score=42.84  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=40.2

Q ss_pred             CCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCC
Q 032522           21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD   81 (139)
Q Consensus        21 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~d   81 (139)
                      ..|...+-..||||++..+.++|.+.|.+|....+|++.++    .-.-.+|..|.+.|..
T Consensus        53 ~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~  109 (127)
T PF03656_consen   53 KGMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQ  109 (127)
T ss_dssp             ----HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHH
Confidence            36788899999999999999999999999999999998542    3455678888888753

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=91.05  E-value=0.6  Score=28.61  Aligned_cols=30  Identities=27%  Similarity=0.455  Sum_probs=27.0

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHH
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLAL   52 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~   52 (139)
                      |...+.|++|||+++.+.+.|-.+|+....
T Consensus         2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            455688999999999999999999999877

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=90.52  E-value=0.81  Score=31.82  Aligned_cols=48  Identities=15%  Similarity=0.221  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCChh----HHHHHHHHHHHHHHhCCch
Q 032522           36 YDATDEKIRLNYRKLALKWHPDKHNGDSA----VTAKFQEINEAYAVLSDPD   83 (139)
Q Consensus        36 ~~as~~eIk~ayr~la~~~HPDk~~~~~~----a~~~f~~i~~Ay~iL~dp~   83 (139)
                      +..+..+++.|-|..-++.|||.....|+    .++-++.++.--+.|..+.
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence            34577899999999999999998776663    3456778887777777654

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=89.35  E-value=0.46  Score=38.51  Aligned_cols=54  Identities=35%  Similarity=0.543  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC----ChhHHHHHHHHHHHHHHhCCchhhhhhhc
Q 032522           37 DATDEKIRLNYRKLALKWHPDKHNG----DSAVTAKFQEINEAYAVLSDPDKRLDYDF   90 (139)
Q Consensus        37 ~as~~eIk~ayr~la~~~HPDk~~~----~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~   90 (139)
                      .++..+|+.+|+..++..||++...    .....+.++.|.+||+||.+.++|...|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            3577899999999999999998531    12356779999999999998666555554

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=89.04  E-value=0.97  Score=34.38  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhC
Q 032522           35 DYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS   80 (139)
Q Consensus        35 ~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~   80 (139)
                      +++|+.+||.+|+.++..+|--|.        +.-.+|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~--------~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDE--------KSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHHH
Confidence            478999999999999999994432        56677999998753

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-14
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		4e-14
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		5e-14
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-13
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-11
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-11
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		6e-11
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		7e-11
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		8e-11
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		3e-10
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		4e-10
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		5e-10
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-09
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-09
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		3e-09
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		9e-09
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		9e-09
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-08
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		4e-08
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		8e-08
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-07
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		8e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-05
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-05

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          QDYY+IL V   A + +IR  Y++LA+K+HPD++ GD    AKF+EI EAY VL+D  KR
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 86 LDYDFTG 92
            YD  G
Sbjct: 63 AAYDQYG 69

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          QDYY+IL V   A + +IR  Y++LA+K+HPD++ GD    AKF+EI EAY VL+D  KR
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 86 LDYDFTG 92
            YD  G
Sbjct: 63 AAYDQYG 69

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          QDYY+IL V   A + +IR  Y++LA+K+HPD++ GD    AKF+EI EAY VL+D  KR
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 86 LDYDFTG 92
            YD  G
Sbjct: 63 AAYDQYG 69

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY+IL V   A+DE ++  YR+LALK+HPDK++   A  A F+ I  AYAVLS+P+KR 
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA-FKAIGTAYAVLSNPEKRK 66
Query: 87 DYD 89
           YD
Sbjct: 67 QYD 69

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+ L +   A+DE+I+  YR+ AL++HPDK N +     KF+EI EAY VLSDP KR
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 86 LDYDFTG 92
            +D  G
Sbjct: 62 EIFDRYG 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKH--NGDSAVTAKFQEINEAYAVLSDPDK 84
          DYY++L+V   A+ E I+  YRKLALKWHPDK+  N + A   +F+++ EAY VLSD  K
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEA-ERRFKQVAEAYEVLSDAKK 68
Query: 85 RLDYDFTG 92
          R  YD  G
Sbjct: 69 RDIYDRYG 76

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 88
          Y +L +D +AT + I+ +YRKLALK+HPDK+  +     KF+EIN A+A+L+D  KR  Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 89 DFTG 92
          D  G
Sbjct: 80 DKYG 83

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 88
          Y +L V   A +++++  YRK ALK+HPDK  GD   T KF+EI+EA+ +L+DP KR  Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 89 DFTGI 93
          D  G+
Sbjct: 68 DQYGL 72

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA--KFQEINEAYAVLSDP 82
            +YY++L V   A+ E I+  YRKLAL+WHPDK N D+   A  KF+ ++EAY VLSD 
Sbjct: 8  MANYYEVLGVQASASPEDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 83 DKRLDYDFTGI 93
           KR  YD  G 
Sbjct: 67 KKRSLYDRAGC 77

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
          YY IL V   A++ +I+  + KLA+K+HPDK N      AKF+EI EAY  LSD ++R +
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDK-NKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 88 YDFTG 92
          YD  G
Sbjct: 68 YDTLG 72

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
          YY +L V  +AT E+++  YRKLALK+HPDK+  +     KF++I++AY VLSD  KR  
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYEVLSDAKKREL 64
Query: 88 YDFTG 92
          YD  G
Sbjct: 65 YDKGG 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 87
          YY +L V  DA+D +++  YRK+ALK+HPDK N D A   +F++I++AY VLSD  KR  
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDK-NPDGA--EQFKQISQAYEVLSDEKKRQI 66
Query: 88 YDFTG 92
          YD  G
Sbjct: 67 YDQGG 71

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 86
          DYY+IL V  +A+ ++I+  Y +LA K+HPD +  D     KF ++ EAY VLSD  KR 
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 87 DYDFTG 92
           YD  G
Sbjct: 68 QYDAYG 73

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA 77
          +S S ++F D Y++L V   A+   I+  Y+KLA +WHPDK N D     +F +I++AY 
Sbjct: 10 QSLSALDF-DPYRVLGVSRTASQADIKKAYKKLAREWHPDK-NKDPGAEDRFIQISKAYE 67
Query: 78 VLSDPDKRLDYDFTG 92
          +LS+ +KR +YD  G
Sbjct: 68 ILSNEEKRTNYDHYG 82

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 28 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA--KFQEINEAYAVLSDPDKR 85
          YY+IL+V   A+ + I+  YR+ AL+WHPDK N D+   A  KF+E+ EAY VLSD  KR
Sbjct: 4  YYEILDVPRSASADDIKKAYRRKALQWHPDK-NPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 86 LDYDFTG 92
            YD  G
Sbjct: 63 EIYDRYG 69

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDK 84
           Q++Y +L V   A+  +IR  ++KLALK HPDK+  +      F +IN AY VL D D 
Sbjct: 1  IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60
Query: 85 RLDYDFTG 92
          R  YD  G
Sbjct: 61 RKKYDKYG 68

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          Q++Y +L V   A+  +IR  ++KLALK HPDK+  +      F +IN AY VL D D R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 86 LDYDFTG 92
            YD  G
Sbjct: 81 KKYDKYG 87

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 2   EGNDNNTQ-KEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 60
           E N+N+ Q +E +  ++      + +DYYKIL V  +A  ++I   YRKLAL+WHPD   
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 61  G---DSAVTAKFQEINEAYAVLSDPDKRLDYD 89
                     KF +I  A  VLSDP+ R  +D
Sbjct: 417 NEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 2   EGNDNNTQ-KEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 60
           E N+N+ Q +E +  ++      + +DYYKIL V  +A  ++I   YRKLAL+WHPD   
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 61  G---DSAVTAKFQEINEAYAVLSDPDKRLDYD 89
                     KF +I  A  VLSDP+ R  +D
Sbjct: 417 NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
          ME +DYY IL V      + I+  YR+LA K+HPD    + A  AKF+++ EA+ VL D 
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDA-EAKFKDLAEAWEVLKDE 83
Query: 83 DKRLDYD 89
           +R +YD
Sbjct: 84 QRRAEYD 90

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPD 83
          E +DYY I+ V      + I+  YR+LA K+HPD      A  A+F+E+ EA+ VLSD  
Sbjct: 3  ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDA-EARFKEVAEAWEVLSDEQ 61
Query: 84 KRLDYD 89
          +R +YD
Sbjct: 62 RRAEYD 67

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY +L  D  ++ E+I   ++  AL+ HPDKH  +      FQ++ +A  +L++ + R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 86 LDYD 89
            YD
Sbjct: 80 ARYD 83

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 88
          Y +L V   AT  +I+  Y +    +HPD+++G +    +F  I++AY VL     R  Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 89 D 89
          D
Sbjct: 80 D 80

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA------VTAKFQEINEA 75
           M  +D+Y IL  D  A    ++  Y+KL L +HPDK + D           KF EI++A
Sbjct: 6  QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQA 65
Query: 76 YAVLSDPDKRLDYDF 90
          + +L + + + +YD 
Sbjct: 66 WKILGNEETKREYDL 80

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA------KFQEINEAYAVL 79
          +D+Y IL  D  A    ++  Y+KL L +HPDK + D           KF EI++A+ +L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 80 SDPDKRLDYDF 90
           + + +  YD 
Sbjct: 76 GNEETKKKYDL 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-31
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-28
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-27
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-27
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-27
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	8e-27
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-26
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-26
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	4e-26
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-26
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	9e-26
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-25
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	5e-25
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-25
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-24
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-24
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-24
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	4e-24
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	5e-24
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	6e-24
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-22
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-22
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	9e-21
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	6e-15
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	5e-14
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-14
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	8e-14
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-13
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-12
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-12
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-08
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-08

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  111 bits (279), Expect = 9e-31
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 12 KMGASRE--SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKF 69
           +G        + ME +DYY IL V      + I+  YR+LA K+HPD    + A  AKF
Sbjct: 12 DLGTENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAE-AKF 70

Query: 70 QEINEAYAVLSDPDKRLDYD 89
          +++ EA+ VL D  +R +YD
Sbjct: 71 KDLAEAWEVLKDEQRRAEYD 90

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 99.0 bits (247), Expect = 4e-28
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 14 GASRESRS-NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEI 72
          G+S   RS +   +  Y +L +D +AT + I+ +YRKLALK+HPDK+  +     KF+EI
Sbjct: 4  GSSGRQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEI 63

Query: 73 NEAYAVLSDPDKRLDYD 89
          N A+A+L+D  KR  YD
Sbjct: 64 NNAHAILTDATKRNIYD 80

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 96.6 bits (241), Expect = 2e-27
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYA 77
          S  +    +YY++L V   A+ E I+  YRKLAL+WHPDK+  +      KF+ ++EAY 
Sbjct: 2  SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61

Query: 78 VLSDPDKRLDYDFTG 92
          VLSD  KR  YD  G
Sbjct: 62 VLSDSKKRSLYDRAG 76

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 95.8 bits (239), Expect = 3e-27
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYA 77
          S  +    DYY++L+V   A+ E I+  YRKLALKWHPDK+  +      +F+++ EAY 
Sbjct: 2  SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61

Query: 78 VLSDPDKRLDYD 89
          VLSD  KR  YD
Sbjct: 62 VLSDAKKRDIYD 73

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 96.0 bits (239), Expect = 5e-27
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
           + +DYY +L  D  ++ E+I   ++  AL+ HPDKH  +      FQ++ +A  +L++ 
Sbjct: 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76

Query: 83 DKRLDYD 89
          + R  YD
Sbjct: 77 ESRARYD 83

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 95.2 bits (237), Expect = 8e-27
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query: 14 GASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEIN 73
           +  +   +      Y +L V   AT  +I+  Y +    +HPD+++G +    +F  I+
Sbjct: 5  SSGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRIS 64

Query: 74 EAYAVLSDPDKRLDYD 89
          +AY VL     R  YD
Sbjct: 65 QAYVVLGSATLRRKYD 80

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 96.1 bits (239), Expect = 2e-26
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVT------AKFQEI 72
          +   M  +D+Y IL  D  A    ++  Y+KL L +HPDK + D           KF EI
Sbjct: 3  AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62

Query: 73 NEAYAVLSDPDKRLDYD 89
          ++A+ +L + + + +YD
Sbjct: 63 DQAWKILGNEETKREYD 79

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 93.5 bits (233), Expect = 2e-26
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 80
          S+    DYY+IL V  +A+ ++I+  Y +LA K+HPD +  D     KF ++ EAY VLS
Sbjct: 2  SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61

Query: 81 DPDKRLDYD 89
          D  KR  YD
Sbjct: 62 DEVKRKQYD 70

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 92.6 bits (231), Expect = 4e-26
 Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+ L +   A+DE+I+  YR+ AL++HPDK N +     KF+EI EAY VLSDP KR
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 86 LDYD 89
            +D
Sbjct: 62 EIFD 65

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 96.5 bits (240), Expect = 5e-26
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          Q++Y +L V   A+  +IR  ++KLALK HPDK+  +      F +IN AY VL D D R
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 86 LDYD 89
            YD
Sbjct: 62 KKYD 65

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 92.4 bits (230), Expect = 9e-26
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 27 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAV-TAKFQEINEAYAVLSDPDKR 85
           YY+IL+V   A+ + I+  YR+ AL+WHPDK+  +      KF+E+ EAY VLSD  KR
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 86 LDYD 89
            YD
Sbjct: 63 EIYD 66

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 92.1 bits (229), Expect = 1e-25
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 14 GASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVT------A 67
          G+S  +      +D+Y IL  D  A    ++  Y+KL L +HPDK + D           
Sbjct: 4  GSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQ 63

Query: 68 KFQEINEAYAVLSDPDKRLDYD 89
          KF EI++A+ +L + + +  YD
Sbjct: 64 KFIEIDQAWKILGNEETKKKYD 85

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 90.0 bits (224), Expect = 5e-25
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 80
          S+    DYY+IL V   A+DE ++  YR+LALK+HPDK N     T  F+ I  AYAVLS
Sbjct: 2  SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK-NHAPGATEAFKAIGTAYAVLS 60

Query: 81 DPDKRLDYD 89
          +P+KR  YD
Sbjct: 61 NPEKRKQYD 69

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 90.4 bits (225), Expect = 6e-25
 Identities = 34/64 (53%), Positives = 45/64 (70%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          QDYY+IL V   A + +IR  Y++LA+K+HPD++ GD    AKF+EI EAY VL+D  KR
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 86 LDYD 89
            YD
Sbjct: 63 AAYD 66

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 89.0 bits (221), Expect = 1e-24
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 14 GASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEIN 73
           +      +    D Y++L V   A+   I+  Y+KLA +WHPDK N D     +F +I+
Sbjct: 5  SSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK-NKDPGAEDRFIQIS 63

Query: 74 EAYAVLSDPDKRLDYD 89
          +AY +LS+ +KR +YD
Sbjct: 64 KAYEILSNEEKRTNYD 79

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 88.5 bits (220), Expect = 3e-24
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 78
          S + ++    Y +L V   A +++++  YRK ALK+HPDK  GD   T KF+EI+EA+ +
Sbjct: 1  SNAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEI 57

Query: 79 LSDPDKRLDYD 89
          L+DP KR  YD
Sbjct: 58 LNDPQKREIYD 68

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 89.0 bits (221), Expect = 3e-24
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 23 MEFQDYYKILEVDYDATDEK-IRLNYRKLALKWHPDKHNGDSAVTA---KFQEINEAYAV 78
             ++ Y +LEV+ +  D++ +   YR LA K HPD+            +F+ I  AY  
Sbjct: 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYET 71

Query: 79 LSDPDKRLDYD 89
          L D + + +YD
Sbjct: 72 LKDDEAKTNYD 82

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 87.7 bits (218), Expect = 4e-24
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 78
          S + ++   YY +L V  DA+D +++  YRK+ALK+HPDK N D A   +F++I++AY V
Sbjct: 1  SNAMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDK-NPDGA--EQFKQISQAYEV 57

Query: 79 LSDPDKRLDYD 89
          LSD  KR  YD
Sbjct: 58 LSDEKKRQIYD 68

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 87.9 bits (218), Expect = 5e-24
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 82
             +D + +L V   A+ +++   YRKLA+  HPDK          F+ +  A   L   
Sbjct: 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK-CVAPGSEDAFKAVVNARTALLKN 82

Query: 83 DKRLDYD 89
           K     
Sbjct: 83 IKSGPSS 89

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 87.7 bits (218), Expect = 6e-24
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 80
          S+     YY IL V   A++ +I+  + KLA+K+HPDK N      AKF+EI EAY  LS
Sbjct: 2  SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDK-NKSPDAEAKFREIAEAYETLS 60

Query: 81 DPDKRLDYD 89
          D ++R +YD
Sbjct: 61 DANRRKEYD 69

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 91.0 bits (225), Expect = 2e-22
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 21  SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 80
                Q++Y +L V   A+  +IR  ++KLALK HPDK+  +      F +IN AY VL 
Sbjct: 16  EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 75

Query: 81  DPDKRLDYDFTGIYEIDKYTLREY 104
           D D R  YD  G   ++     +Y
Sbjct: 76  DEDLRKKYDKYGEKGLEDNQGGQY 99

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 85.7 bits (212), Expect = 3e-22
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 21 SNMEFQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 78
          +  E      +L ++  A      +R  Y K   ++HPDK  GD     K +++N  Y  
Sbjct: 6  NREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK-GGDEE---KMKKMNTLYKK 61

Query: 79 LSDPDKRLDYDFTG 92
          + D  K       G
Sbjct: 62 MEDGVKYAHQPDFG 75

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 80.2 bits (198), Expect = 9e-21
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 21 SNM--EFQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAY 76
          S+M  E      +L ++  A      +R  Y K   ++HPDK  GD     K +++N  Y
Sbjct: 1  SHMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK-GGDEE---KMKKMNTLY 56

Query: 77 AVLSDPDKRLDYDFTG 92
            + D  K       G
Sbjct: 57 KKMEDGVKYAHQPDFG 72

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 78.6 bits (194), Expect = 2e-20
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAV-TAKFQEINEAYAVLSDPD 83
           ++   ++E  +   + + +   R+L LKWHPDK+  +  +    F+ +      L    
Sbjct: 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE--- 71

Query: 84 KRLDYD 89
          K+   D
Sbjct: 72 KQAFLD 77

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 10  KEKMGASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA-- 67
           +E +  ++      + +DYYKIL V  +A  ++I   YRKLAL+WHPD    +       
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAE 425

Query: 68  -KFQEINEAYAVLSDPDKRLDYD 89
            KF +I  A  VLSDP+ R  +D
Sbjct: 426 KKFIDIAAAKEVLSDPEMRKKFD 448

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 64.6 bits (157), Expect = 5e-14
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 26 QDYYKILEVD-------YDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 78
            +Y++           +     ++R  YR+L  + HPD     S    +   +N+AY  
Sbjct: 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSE---QSSTLNQAYHT 67

Query: 79 LSDPDKRLDYDFTGIYEID 97
          L DP +R  Y    +  ID
Sbjct: 68 LKDPLRRSQYMLKLLRNID 86

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 64.2 bits (156), Expect = 6e-14
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 27 DYYKIL--EVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVT-----AKFQEINEAYAVL 79
          DY+ +      Y    + + L ++ L  ++HPDK    S         +   IN+A+  L
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 80 SDPDKRLDYDF 90
            P  R +Y  
Sbjct: 62 RHPLMRAEYLL 72

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 61.5 bits (149), Expect = 8e-14
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 21 SNMEFQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 78
          S  + +   ++L++         +++  Y++ +L  HPDK  G     A  QE+N  +  
Sbjct: 6  SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK-GGS---HALMQELNSLWGT 61

Query: 79 LSDPDKRLDYDFTG 92
                 L  +  G
Sbjct: 62 FKTEVYNLRMNLGG 75

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 63.3 bits (153), Expect = 2e-13
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 24  EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLS 80
             +  +K + +    T E+++  YRK  L  HPDK  G          F E+N+A++   
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174

Query: 81  DPDKRLDY 88
           +  ++  Y
Sbjct: 175 NQGQKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 58.1 bits (141), Expect = 1e-12
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 21 SNMEFQDYYKILEVDYDA-TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVL 79
            M  ++  +IL +  +  T +K++  +RK+ L  HPDK  G         +INEA   L
Sbjct: 9  PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDK-GGS---PFLATKINEAKDFL 64

Query: 80 SDPDKR 85
                
Sbjct: 65 EKRGIS 70

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 60.1 bits (145), Expect = 3e-12
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 26  QDYYKI--LEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAV 78
           +DY+ +      +     K++  Y++L    HPD  +  S             +N+AY  
Sbjct: 43  RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102

Query: 79  LSDPDKRLDYDF 90
           L  P  R  Y  
Sbjct: 103 LLAPLSRGLYLL 114

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLSD 81
          +K + +    T E+++  YRK  L  HP K  G          F E+N+A++   +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 29 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVT-------AKFQEINEAY 76
          +K + +        +R +Y++  L  HPDK     A           F+ + EA+
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.9
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.9
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.89
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.89
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.89
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.89
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.88
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.88
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.88
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.88
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.88
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.88
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.87
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.87
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.87
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.86
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.86
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.83
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.81
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.8
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.78
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.78
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.76
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.76
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.76
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.75
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.75
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.74
2guz_A	71	Mitochondrial import inner membrane translocase su	99.72
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.72
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.71
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.7
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.21
2guz_B	65	Mitochondrial import inner membrane translocase su	99.12
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.06

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=3.7e-24  Score=139.26  Aligned_cols=74  Identities=41%  Similarity=0.615  Sum_probs=68.6

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .+...|+|+||||+++++.++||+|||++++++|||+++..+.+.+.|+.|++||++|+||.+|..||.++..+
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            45567999999999999999999999999999999998877788999999999999999999999999988654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=137.85  Aligned_cols=75  Identities=44%  Similarity=0.714  Sum_probs=67.7

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .....|+|+||||+++++.++||+|||++++++|||+++... .+.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            445689999999999999999999999999999999987653 678899999999999999999999999887554

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=144.64  Aligned_cols=84  Identities=26%  Similarity=0.476  Sum_probs=73.3

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccccccH
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTL  101 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~~~~  101 (139)
                      .+...|||+||||+++++.++||+|||++++++|||+++..+.+.++|++|++||+||+||.+|..||..+..++. ...
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~~   94 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS-MPF   94 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS-SCH
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC-CCH
Confidence            3456899999999999999999999999999999999887778999999999999999999999999998766554 344


Q ss_pred             HHHHH
Q 032522          102 REYLA  106 (139)
Q Consensus       102 ~~~~~  106 (139)
                      +.|..
T Consensus        95 ~~w~~   99 (112)
T 2ctq_A           95 QQWEA   99 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=140.91  Aligned_cols=75  Identities=27%  Similarity=0.493  Sum_probs=69.2

Q ss_pred             cccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccC
Q 032522           18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG   92 (139)
Q Consensus        18 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g   92 (139)
                      ...+.+...|||+||||+++++.++||+|||+|++++|||+++..+.+.+.|+.|++||+||+||.+|..||...
T Consensus         9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A            9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            445577889999999999999999999999999999999998877888999999999999999999999999754

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.89  E-value=4.9e-24  Score=145.41  Aligned_cols=73  Identities=48%  Similarity=0.836  Sum_probs=68.3

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      .|+|+||||+++++.++||+|||+|++++|||+++..+.+.++|+.|++||+||+||.+|..||..+...+..
T Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   75 (103)
T 1bq0_A            3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ   75 (103)
T ss_dssp             CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence            6999999999999999999999999999999998876778899999999999999999999999999877653

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3.5e-23  Score=134.41  Aligned_cols=73  Identities=47%  Similarity=0.739  Sum_probs=66.7

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .+...|+|+||||+++++.++||+||+++++++|||+++ .+.+.+.|+.|++||+||+||.+|..||..+..+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            455689999999999999999999999999999999975 4678899999999999999999999999988654

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.88  E-value=4.5e-23  Score=133.59  Aligned_cols=71  Identities=45%  Similarity=0.739  Sum_probs=65.5

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      .|+|+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||.+|..++.
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            699999999999999999999999999999999764 56789999999999999999999999998876654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.88  E-value=5e-23  Score=132.19  Aligned_cols=69  Identities=43%  Similarity=0.729  Sum_probs=61.7

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      .....|||+||||+++++.++||+||+++++++|||+++..   .+.|+.|++||++|+||.+|..||..|.
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            34557999999999999999999999999999999997643   5899999999999999999999998875

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.88  E-value=2.9e-23  Score=139.04  Aligned_cols=76  Identities=30%  Similarity=0.547  Sum_probs=67.7

Q ss_pred             cccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD------SAVTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        18 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~------~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      +....+...|+|+||||+++++.++||+|||++++++|||+++..      +.+.+.|++|++||+||+||.+|..||..
T Consensus         8 ~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   87 (94)
T 1wjz_A            8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             cccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            344567788999999999999999999999999999999998643      45788999999999999999999999986


Q ss_pred             Cc
Q 032522           92 GI   93 (139)
Q Consensus        92 g~   93 (139)
                      ..
T Consensus        88 l~   89 (94)
T 1wjz_A           88 RS   89 (94)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=4e-23  Score=137.17  Aligned_cols=73  Identities=41%  Similarity=0.681  Sum_probs=66.4

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .....|||+||||++.++.++||+|||++++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            445679999999999999999999999999999999976 5678899999999999999999999999877533

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=5.3e-23  Score=141.75  Aligned_cols=76  Identities=41%  Similarity=0.634  Sum_probs=69.7

Q ss_pred             CCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        21 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      ......|+|+||||+++++.++||+|||+|++++|||+++..+.+.+.|+.|++||+||+||.+|..||..+..++
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            3556689999999999999999999999999999999988778889999999999999999999999999886543

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=6.6e-23  Score=137.01  Aligned_cols=75  Identities=43%  Similarity=0.717  Sum_probs=67.4

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .....|||+||||+++++.++||+|||++++++|||+++.. ..+.+.|+.|++||+||+||.+|..||..+....
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            44568999999999999999999999999999999998765 4678899999999999999999999998876543

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=1.4e-22  Score=134.52  Aligned_cols=73  Identities=36%  Similarity=0.626  Sum_probs=66.0

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .....|+|+||||+++++.++||+|||++++++|||+++. +.+.+.|+.|++||++|+||.+|..||.+|..+
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            3345799999999999999999999999999999999764 568899999999999999999999999987643

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.5e-22  Score=135.49  Aligned_cols=71  Identities=44%  Similarity=0.735  Sum_probs=64.2

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      .+...|+|+||||+++++.++||+|||++++++|||+++..   .++|++|++||+||+||.+|..||.++..+
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   74 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEA   74 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence            34668999999999999999999999999999999998654   469999999999999999999999887544

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.87  E-value=1.4e-22  Score=137.60  Aligned_cols=72  Identities=43%  Similarity=0.719  Sum_probs=64.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      .|||+||||+++++.++||+|||++++++|||+++.. ..+.+.|+.|++||++|+||.+|..||..+..++.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            6999999999999999999999999999999998765 45788999999999999999999999998765554

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.86  E-value=4.1e-22  Score=149.12  Aligned_cols=72  Identities=40%  Similarity=0.666  Sum_probs=67.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      +|||+||||+++++.++||+|||++++++|||+++..+.+.++|+.|++||++|+||.+|..||.+|..+..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            699999999999999999999999999999999887788999999999999999999999999998876554

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.86  E-value=3e-22  Score=137.74  Aligned_cols=88  Identities=25%  Similarity=0.432  Sum_probs=72.9

Q ss_pred             CCCccchhhhccCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHHHhCCchhhhhhhccCccccc
Q 032522           22 NMEFQDYYKILEVDYDA-TDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID   97 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~la~~~HPDk~~~---~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~   97 (139)
                      .....|+|+||||++++ +.++||+|||++++++|||++++   .+.+.+.|++|++||+||+||.+|..||..+.... 
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~-   89 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPD-   89 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTT-
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCch-
Confidence            45568999999999999 99999999999999999999865   35678999999999999999999999998775332 


Q ss_pred             cccHHHHHHHHhcc
Q 032522           98 KYTLREYLARFKGM  111 (139)
Q Consensus        98 ~~~~~~~~~~~~~~  111 (139)
                       .....++..|...
T Consensus        90 -~~~~~~~~~~~~~  102 (109)
T 2qsa_A           90 -QRFYNYYQYYRLR  102 (109)
T ss_dssp             -CHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHH
Confidence             2345555555543

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.83  E-value=8.3e-21  Score=137.78  Aligned_cols=72  Identities=33%  Similarity=0.632  Sum_probs=65.0

Q ss_pred             CCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------hHHHHHHHHHHHHHHhCCchhhhhhhccC
Q 032522           21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS------AVTAKFQEINEAYAVLSDPDKRLDYDFTG   92 (139)
Q Consensus        21 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~------~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g   92 (139)
                      ..+..+|||+||||+++++.++||+|||++++++|||+++..+      .+.+.|+.|++||+||+||.+|..||..+
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4566789999999999999999999999999999999987653      36789999999999999999999999754

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.81  E-value=1.2e-21  Score=157.67  Aligned_cols=76  Identities=37%  Similarity=0.588  Sum_probs=0.0

Q ss_pred             ccccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           17 RESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        17 ~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      ..+...|..+|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|..||.++.
T Consensus        19 ~~~~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           19 YFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             ccccccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            444556778999999999999999999999999999999999764 4688999999999999999999999998743

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2e-20  Score=124.76  Aligned_cols=63  Identities=27%  Similarity=0.361  Sum_probs=57.5

Q ss_pred             CccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhh
Q 032522           24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD   87 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~   87 (139)
                      ...|+|+||||+++++.++||+|||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            34799999999999999999999999999999999764 5678899999999999999998864

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.80  E-value=6.7e-21  Score=132.37  Aligned_cols=67  Identities=22%  Similarity=0.267  Sum_probs=60.9

Q ss_pred             ccchhhhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           25 FQDYYKILEVDYDATD--EKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~--~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      ..++|+||||++.++.  ++||+|||+|++++|||+++.    .++|++|++||+||+||.+|..||.++..+
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~~w   75 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccccc
Confidence            4699999999999998  999999999999999999764    479999999999999999999999876533

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.78  E-value=8.5e-20  Score=121.44  Aligned_cols=69  Identities=17%  Similarity=0.315  Sum_probs=61.3

Q ss_pred             ccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhCCchhhhh
Q 032522           19 SRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLD   87 (139)
Q Consensus        19 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~   87 (139)
                      +...+...++|+||||+++++.++||+|||+|++++|||+++.. ..+.++|+.|++||++|++...|..
T Consensus         9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A            9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            44567778999999999999999999999999999999998766 3578999999999999999877733

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.76  E-value=2.7e-19  Score=116.63  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             CccchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           24 EFQDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      +..++|+||||+++  ++.++||+|||++++++|||+++.    .++|++|++||++|+|+.+|..++ +|.
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~-~g~   75 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN-LGG   75 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC-CSS
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh-cCC
Confidence            34689999999999  999999999999999999999642    479999999999999999999865 443

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.76  E-value=3.1e-19  Score=131.80  Aligned_cols=66  Identities=24%  Similarity=0.475  Sum_probs=60.5

Q ss_pred             chhhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhCCchhhhhhhccC
Q 032522           27 DYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFTG   92 (139)
Q Consensus        27 d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~g   92 (139)
                      |||+||||++++  +..+||++||++++++|||++++.+.     +.+.|+.|++||+||+||.+|..||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            899999999998  99999999999999999999876643     4579999999999999999999999753

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.76  E-value=6.7e-20  Score=135.64  Aligned_cols=66  Identities=23%  Similarity=0.273  Sum_probs=58.3

Q ss_pred             ccchhhhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcc
Q 032522           25 FQDYYKILEVDYDAT--DEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIY   94 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as--~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~   94 (139)
                      ..|+|+||||+++++  .++||+|||++++++|||++++    .++|++|++||+||+||.+|..||.+|..
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~~   77 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   77 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCCc
Confidence            479999999999998  6999999999999999999764    37999999999999999999999998863

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.75  E-value=1.1e-19  Score=158.33  Aligned_cols=78  Identities=37%  Similarity=0.595  Sum_probs=40.8

Q ss_pred             CCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           21 SNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        21 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      ......|||+||||+++++.++||+|||++++++|||+++..+.+.++|++|++||++|+||.+|..||.+|..+...
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            345568999999999999999999999999999999998777788899999999999999999999999998766653

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.75  E-value=1.3e-18  Score=131.94  Aligned_cols=67  Identities=24%  Similarity=0.380  Sum_probs=60.1

Q ss_pred             CccchhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhCCchhhhhhhc
Q 032522           24 EFQDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDF   90 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~   90 (139)
                      ...|||+||||++.  ++..+||++||+|++++|||+++..+.     +.+.|+.|++||+||+||.+|..||.
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            35799999999986  799999999999999999999876542     56789999999999999999999985

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.74  E-value=2.9e-19  Score=133.05  Aligned_cols=67  Identities=25%  Similarity=0.361  Sum_probs=60.7

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhCCchhhhhh
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLSDPDKRLDY   88 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~---a~~~f~~i~~Ay~iL~dp~~R~~Y   88 (139)
                      .+...|+|+||||++.++.++||+|||++++++|||++++.+.   +.+.|+.|++||+||+||.+|..|
T Consensus       113 l~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             SCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3444799999999999999999999999999999999876543   788999999999999999999887

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.7e-18  Score=110.69  Aligned_cols=60  Identities=28%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             CCCccchhhhccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhh
Q 032522           22 NMEFQDYYKILEVDY-DATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR   85 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~-~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R   85 (139)
                      .|...++|+||||++ +++.++||+|||+|++++|||+++ .   .+.|++|++||++|+++..|
T Consensus        10 ~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             SCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhc
Confidence            566789999999998 799999999999999999999953 3   36999999999999988765

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.72  E-value=1.8e-18  Score=128.77  Aligned_cols=68  Identities=24%  Similarity=0.449  Sum_probs=60.3

Q ss_pred             CCCccchhhhc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccC
Q 032522           22 NMEFQDYYKIL------EVDY-DATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG   92 (139)
Q Consensus        22 ~~~~~d~Y~iL------gv~~-~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g   92 (139)
                      .....|||+||      |+++ +++..+||++||++++++|||++++   +.+.|+.|++||+||+||.+|..||...
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            34457999999      4665 8999999999999999999999875   5689999999999999999999999843

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.71  E-value=1.8e-18  Score=115.90  Aligned_cols=56  Identities=27%  Similarity=0.406  Sum_probs=51.3

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhCC
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS---AVTAKFQEINEAYAVLSD   81 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~---~a~~~f~~i~~Ay~iL~d   81 (139)
                      .++|++|||++.++.++||+|||++++++|||++++.+   .+.++|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999987654   378899999999999964

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.70  E-value=4e-18  Score=116.90  Aligned_cols=62  Identities=18%  Similarity=0.267  Sum_probs=53.5

Q ss_pred             CCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---h----hHHHHHHHHHHHHHHhCCchh
Q 032522           22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD---S----AVTAKFQEINEAYAVLSDPDK   84 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~---~----~a~~~f~~i~~Ay~iL~dp~~   84 (139)
                      .+...|||+|||++. ++.++||+|||++++++|||+++..   +    .+.++|+.|++||++|+|+..
T Consensus        37 l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           37 LWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             SCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             hcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            344579999999996 9999999999999999999997632   1    467899999999999999863

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.21  E-value=7.8e-12  Score=99.09  Aligned_cols=66  Identities=45%  Similarity=0.751  Sum_probs=55.7

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHhCCchhhhhhhc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD---SAVTAKFQEINEAYAVLSDPDKRLDYDF   90 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~---~~a~~~f~~i~~Ay~iL~dp~~R~~YD~   90 (139)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+..   ..+.+.|+.|.+||++|+||++|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            35899999999999999999999999999999997654   3478899999999999999999999995

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.12  E-value=6.2e-11  Score=74.28  Aligned_cols=53  Identities=17%  Similarity=0.137  Sum_probs=46.5

Q ss_pred             CccchhhhccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhC
Q 032522           24 EFQDYYKILEVDYD---ATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS   80 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~---as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~   80 (139)
                      ...+.|.||||++.   ++.++|+++||+|...+|||+.+ .   ......|++|.++|.
T Consensus         2 t~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG-S---~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            2 TLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG-S---FYLQSKVYRAAERLK   57 (65)
T ss_dssp             CHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC-C---HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHH
Confidence            45688999999998   99999999999999999999954 3   367888999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.06  E-value=0.035  Score=47.38  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=38.5

Q ss_pred             CCCccchhhhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHH
Q 032522           22 NMEFQDYYKILEVDYDATD--EKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV   78 (139)
Q Consensus        22 ~~~~~d~Y~iLgv~~~as~--~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~i   78 (139)
                      ....+|+|.+||++.+...  .+|++|||++++..+++        .+++..|..|..|
T Consensus       625 ~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          625 KDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             TSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             HccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            3445679999999776655  67999999999976554        3788899988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	7e-17
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-16
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-15
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-14
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-13
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-12
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	4e-12
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-09

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (167), Expect = 7e-17
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 14 GASRESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAK----- 68
          G+S  +      +D+Y IL  D  A    ++  Y+KL L +HPDK + D           
Sbjct: 4  GSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQ 63

Query: 69 -FQEINEAYAVLSDPDKRLDYDFTG 92
           F EI++A+ +L + + +  YD   
Sbjct: 64 KFIEIDQAWKILGNEETKKKYDLQR 88

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 67.3 bits (164), Expect = 1e-16
 Identities = 35/67 (52%), Positives = 46/67 (68%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          QDYY+IL V   A + +IR  Y++LA+K+HPD++ GD    AKF+EI EAY VL+D  KR
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 86 LDYDFTG 92
            YD  G
Sbjct: 63 AAYDQYG 69

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.2 bits (156), Expect = 4e-15
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 24 EFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD---SAVTAKFQEINEAYAVLS 80
            +  +K + +    T E+++  YRK  L  HPDK  G          F E+N+A++   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 81 DPDKRLDY 88
          +  ++  Y
Sbjct: 91 NQGQKPLY 98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 2e-14
 Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 85
          +DYY+ L +   A+DE+I+  YR+ AL++HPDK+    A   KF+EI EAY VLSDP KR
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGA-EEKFKEIAEAYDVLSDPRKR 61

Query: 86 LDYDFTG 92
            +D  G
Sbjct: 62 EIFDRYG 68

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 58.1 bits (140), Expect = 6e-13
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 21 SNMEFQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 78
          S  + +   ++L++         +++  Y++ +L  HPD   G     A  QE+N  +  
Sbjct: 6  SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD-KGGS---HALMQELNSLWGT 61

Query: 79 LSDPDKRLDYDFTG 92
                 L  +  G
Sbjct: 62 FKTEVYNLRMNLGG 75

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (137), Expect = 1e-12
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 27 DYYKILEV--DYDATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVL 79
          DY+ +  +   Y    + + L ++ L  ++HPDK    S         +   IN+A+  L
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 80 SDPDKRLDYD 89
            P  R +Y 
Sbjct: 62 RHPLMRAEYL 71

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 4e-12
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 22 NMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLS 80
              ++   ++E  +   + + +   R+L LKWHPDK+  +       F+ +      L 
Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71

Query: 81 DPDKR 85
               
Sbjct: 72 KQAFL 76

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 48.3 bits (114), Expect = 9e-09
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 19 SRSNMEFQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAY 76
          S    E      +L ++  A      +R  Y K   ++HPDK   +     K +++N  Y
Sbjct: 1  SHMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLY 56

Query: 77 AVLSDPDKRLDYDFTG 92
            + D  K       G
Sbjct: 57 KKMEDGVKYAHQPDFG 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.93
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.89
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.86
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.79
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.78
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.72

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3e-26  Score=146.93  Aligned_cols=72  Identities=49%  Similarity=0.813  Sum_probs=67.7

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccc
Q 032522           25 FQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI   96 (139)
Q Consensus        25 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~   96 (139)
                      .+|||+||||++++|.++||+|||++++++|||+++..+.+.+.|+.|++||+||+||.+|..||.+|..++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            479999999999999999999999999999999988778888999999999999999999999999887654

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-24  Score=137.11  Aligned_cols=72  Identities=44%  Similarity=0.740  Sum_probs=66.3

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCcccccc
Q 032522           26 QDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK   98 (139)
Q Consensus        26 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~~~~   98 (139)
                      +|||+||||++++|.++|++||+++++++|||+++ .+.+.++|+.|++||+||+||.+|..||.+|..++..
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            69999999999999999999999999999999975 4567889999999999999999999999998877653

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.7e-24  Score=140.52  Aligned_cols=76  Identities=30%  Similarity=0.547  Sum_probs=65.8

Q ss_pred             cccCCCCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           18 ESRSNMEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD------SAVTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        18 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~------~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      +.......+|||+||||+++++.++||+||+++++++|||+++..      +.+.+.|+.|++||+||+||.+|..||..
T Consensus         8 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~   87 (94)
T d1wjza_           8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             chhhhhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            333344557999999999999999999999999999999997654      24778899999999999999999999976


Q ss_pred             Cc
Q 032522           92 GI   93 (139)
Q Consensus        92 g~   93 (139)
                      ..
T Consensus        88 ~~   89 (94)
T d1wjza_          88 RS   89 (94)
T ss_dssp             SC
T ss_pred             cC
Confidence            54

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.86  E-value=1.5e-23  Score=144.00  Aligned_cols=67  Identities=22%  Similarity=0.282  Sum_probs=60.1

Q ss_pred             ccchhhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCccc
Q 032522           25 FQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE   95 (139)
Q Consensus        25 ~~d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~~~   95 (139)
                      ..|||+||||+++|  +..+||+|||+||+++|||++++.    ++|++|++||+||+||.+|..||..+...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46999999999998  788999999999999999997643    68999999999999999999999876433

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.79  E-value=2.1e-20  Score=120.44  Aligned_cols=66  Identities=20%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             CccchhhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           24 EFQDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        24 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      ...++|+||||++++  +.++||+|||++++++|||+++ .   .+.|++|++||++|+|+.+|..||..+.
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g-~---~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-S---HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-C---HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC-C---HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            457999999999987  9999999999999999999964 3   3789999999999999999999997543

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.9e-20  Score=117.73  Aligned_cols=65  Identities=26%  Similarity=0.523  Sum_probs=57.5

Q ss_pred             chhhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHHhCCchhhhhhhcc
Q 032522           27 DYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVLSDPDKRLDYDFT   91 (139)
Q Consensus        27 d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~-----~a~~~f~~i~~Ay~iL~dp~~R~~YD~~   91 (139)
                      |||+||||++.  ++.++||+||+++++++|||+..+.+     .+...|+.|++||+||+||.+|..|+..
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            89999999985  56899999999999999999976543     3667899999999999999999999853

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=3.7e-19  Score=118.93  Aligned_cols=66  Identities=26%  Similarity=0.382  Sum_probs=59.3

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhCCchhhhhh
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS---AVTAKFQEINEAYAVLSDPDKRLDY   88 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~---~a~~~f~~i~~Ay~iL~dp~~R~~Y   88 (139)
                      +...+.|++|||++.++.++||+|||++++.+|||++++.+   .+.+.|+.|++||++|+||.+|..|
T Consensus        30 ~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            44567899999999999999999999999999999976553   3678999999999999999999987

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.4e-18  Score=112.78  Aligned_cols=68  Identities=21%  Similarity=0.358  Sum_probs=59.1

Q ss_pred             CCccchhhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhCCchhhhhhhccCc
Q 032522           23 MEFQDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYDFTGI   93 (139)
Q Consensus        23 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~iL~dp~~R~~YD~~g~   93 (139)
                      ...+++|+||+|+.++|.++||+|||+++++||||++++.. .+.+.|+.|++||++|+   ++..||....
T Consensus        13 ~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~   81 (88)
T d1iura_          13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNAD   81 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSS
T ss_pred             hHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccch
Confidence            34589999999999999999999999999999999988764 58899999999999996   4666775443