Query 032523
Match_columns 139
No_of_seqs 107 out of 594
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1id3_C Histone H2A.1; nucleoso 100.0 4.2E-48 1.4E-52 286.4 12.5 128 8-139 4-131 (131)
2 1tzy_A Histone H2A-IV; histone 100.0 6.1E-48 2.1E-52 284.9 10.2 124 1-128 1-124 (129)
3 2nqb_C Histone H2A; nucleosome 100.0 5E-47 1.7E-51 278.0 10.1 118 11-128 5-122 (123)
4 2f8n_G Core histone macro-H2A. 100.0 5.9E-47 2E-51 276.6 9.9 113 14-126 7-119 (120)
5 2f8n_K Histone H2A type 1; nuc 100.0 9.3E-47 3.2E-51 284.2 9.8 124 1-128 20-143 (149)
6 1f66_C Histone H2A.Z; nucleoso 100.0 1.1E-45 3.9E-50 272.4 9.5 120 8-128 5-126 (128)
7 2jss_A Chimera of histone H2B. 100.0 5.3E-36 1.8E-40 233.4 10.3 98 18-116 94-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 1.1E-24 3.7E-29 202.3 7.0 101 19-121 94-194 (1049)
9 1jfi_A Transcription regulator 99.9 3.3E-24 1.1E-28 151.0 7.4 81 22-102 4-84 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 4.2E-20 1.4E-24 129.7 8.4 79 24-102 14-92 (97)
11 4g92_C HAPE; transcription fac 99.8 2.1E-19 7.3E-24 130.4 8.3 76 27-102 39-114 (119)
12 1tzy_D Histone H4-VI; histone- 99.8 4.8E-19 1.7E-23 125.5 8.2 90 1-95 1-94 (103)
13 2yfw_B Histone H4, H4; cell cy 99.8 5E-19 1.7E-23 125.5 7.4 91 1-96 1-95 (103)
14 2byk_A Chrac-16; nucleosome sl 99.7 1.8E-18 6.3E-23 128.8 5.2 85 18-102 8-93 (140)
15 1f1e_A Histone fold protein; a 99.4 1.3E-13 4.6E-18 104.0 7.0 71 24-95 77-147 (154)
16 1id3_B Histone H4; nucleosome 99.4 6.8E-13 2.3E-17 93.8 8.2 83 10-95 11-93 (102)
17 1b67_A Protein (histone HMFA); 99.3 8.9E-12 3E-16 81.4 7.3 64 29-93 2-65 (68)
18 1ku5_A HPHA, archaeal histon; 99.3 9.3E-12 3.2E-16 82.0 7.1 65 29-94 6-70 (70)
19 1n1j_A NF-YB; histone-like PAI 99.1 2.4E-10 8.3E-15 78.9 7.2 67 27-93 6-73 (93)
20 3b0c_W CENP-W, centromere prot 99.0 2.1E-09 7E-14 71.9 7.3 65 29-93 4-68 (76)
21 2hue_C Histone H4; mini beta s 99.0 2.9E-09 9.8E-14 72.5 8.0 71 22-95 5-75 (84)
22 2byk_B Chrac-14; nucleosome sl 98.9 9E-10 3.1E-14 80.6 5.4 75 27-101 7-82 (128)
23 1taf_B TFIID TBP associated fa 98.9 5.2E-09 1.8E-13 69.4 7.4 65 28-93 5-69 (70)
24 1f1e_A Histone fold protein; a 98.8 8.2E-09 2.8E-13 77.7 7.1 64 29-92 4-67 (154)
25 3b0c_T CENP-T, centromere prot 98.6 2.9E-08 1E-12 70.9 4.5 71 27-98 5-75 (111)
26 1taf_A TFIID TBP associated fa 98.6 2.2E-07 7.5E-12 61.2 7.4 61 33-94 5-65 (68)
27 1jfi_B DR1 protein, transcript 98.5 2.5E-07 8.5E-12 71.2 7.4 78 24-102 10-87 (179)
28 3v9r_A MHF1, uncharacterized p 98.3 1.3E-06 4.6E-11 60.3 6.9 79 25-104 11-89 (90)
29 2hue_B Histone H3; mini beta s 98.2 4.1E-06 1.4E-10 56.3 6.9 66 28-93 2-71 (77)
30 4dra_A Centromere protein S; D 98.2 2.1E-06 7.2E-11 61.6 5.8 75 25-103 26-103 (113)
31 3nqj_A Histone H3-like centrom 98.2 3.4E-06 1.1E-10 57.4 6.4 66 28-93 2-73 (82)
32 3b0b_B CENP-S, centromere prot 98.2 2.7E-06 9.3E-11 60.4 5.4 78 25-103 18-95 (107)
33 2yfv_A Histone H3-like centrom 98.0 1E-05 3.5E-10 56.8 6.1 68 26-93 24-98 (100)
34 3vh5_A CENP-S; histone fold, c 98.0 8.2E-06 2.8E-10 60.4 5.6 79 25-104 18-96 (140)
35 3r45_A Histone H3-like centrom 98.0 8.8E-06 3E-10 61.2 5.8 73 25-97 73-151 (156)
36 3nqu_A Histone H3-like centrom 98.0 1E-05 3.5E-10 59.9 6.1 70 25-94 57-132 (140)
37 1tzy_B Histone H2B; histone-fo 98.0 2E-05 6.8E-10 57.4 6.7 71 27-98 35-107 (126)
38 1tzy_C Histone H3; histone-fol 97.9 3E-05 1E-09 57.2 7.0 68 26-93 59-130 (136)
39 2ly8_A Budding yeast chaperone 97.9 3.4E-05 1.2E-09 55.8 6.7 52 43-94 60-111 (121)
40 2nqb_D Histone H2B; nucleosome 97.7 6.2E-05 2.1E-09 54.6 6.3 69 29-98 34-104 (123)
41 2l5a_A Histone H3-like centrom 97.7 3E-05 1E-09 61.7 4.7 59 36-95 168-226 (235)
42 1bh9_B TAFII28; histone fold, 97.3 0.00061 2.1E-08 46.7 6.5 64 29-93 16-80 (89)
43 2jss_A Chimera of histone H2B. 97.2 0.00073 2.5E-08 52.0 6.6 61 33-93 7-67 (192)
44 4dra_E Centromere protein X; D 96.9 0.0046 1.6E-07 42.0 7.5 67 25-91 8-76 (84)
45 3b0b_C CENP-X, centromere prot 96.7 0.0049 1.7E-07 41.5 6.6 65 27-91 6-72 (81)
46 1h3o_B Transcription initiatio 96.0 0.026 8.7E-07 37.5 6.5 68 28-95 4-71 (76)
47 2l5a_A Histone H3-like centrom 93.5 0.11 3.8E-06 41.2 5.2 66 27-92 9-81 (235)
48 1wwi_A Hypothetical protein TT 89.5 1.1 3.6E-05 33.3 6.5 61 29-90 2-62 (148)
49 1k6k_A ATP-dependent CLP prote 88.1 0.56 1.9E-05 32.6 4.1 40 64-103 6-45 (143)
50 1khy_A CLPB protein; alpha hel 83.7 1.1 3.7E-05 31.2 3.8 33 64-96 10-42 (148)
51 3v9r_B MHF2, uncharacterized p 83.4 4.7 0.00016 27.3 6.6 48 30-77 2-51 (88)
52 3fes_A ATP-dependent CLP endop 82.0 0.82 2.8E-05 32.3 2.5 40 64-103 12-53 (145)
53 2y1q_A CLPC N-domain, negative 81.7 1 3.6E-05 31.4 3.0 40 64-103 10-51 (150)
54 1r4v_A Hypothetical protein AQ 81.2 1.4 4.8E-05 33.3 3.7 61 29-90 26-86 (171)
55 3fh2_A Probable ATP-dependent 80.5 1.7 5.7E-05 30.6 3.8 40 64-103 11-52 (146)
56 3fes_A ATP-dependent CLP endop 77.9 1.7 5.7E-05 30.6 3.1 40 64-103 86-127 (145)
57 3fh2_A Probable ATP-dependent 77.3 2.2 7.6E-05 29.9 3.6 39 65-103 87-127 (146)
58 3zri_A CLPB protein, CLPV; cha 76.8 2 6.9E-05 31.7 3.4 40 64-103 29-70 (171)
59 1k6k_A ATP-dependent CLP prote 73.5 3.3 0.00011 28.5 3.6 39 64-102 84-124 (143)
60 1khy_A CLPB protein; alpha hel 71.5 5.6 0.00019 27.4 4.5 40 64-103 87-127 (148)
61 3zri_A CLPB protein, CLPV; cha 68.7 4.6 0.00016 29.7 3.6 32 65-96 104-136 (171)
62 2y1q_A CLPC N-domain, negative 66.2 3.8 0.00013 28.5 2.6 33 64-96 84-116 (150)
63 4gqb_C Histone H4 peptide; TIM 61.3 3.5 0.00012 21.4 1.2 17 2-20 2-22 (26)
64 2v1u_A Cell division control p 61.0 32 0.0011 26.4 7.4 62 32-93 203-274 (387)
65 2vxz_A Pyrsv_GP04; viral prote 59.6 18 0.00061 27.0 5.3 46 58-104 71-116 (165)
66 1r6b_X CLPA protein; AAA+, N-t 59.1 10 0.00035 33.3 4.6 40 64-103 6-45 (758)
67 3kw6_A 26S protease regulatory 49.8 20 0.00068 22.2 3.7 23 71-93 49-71 (78)
68 2qby_A CDC6 homolog 1, cell di 47.0 52 0.0018 25.1 6.5 63 32-94 199-271 (386)
69 1g8p_A Magnesium-chelatase 38 43.7 43 0.0015 25.6 5.5 47 47-93 267-320 (350)
70 3pxg_A Negative regulator of g 43.7 13 0.00045 30.9 2.7 39 64-102 10-50 (468)
71 3pxg_A Negative regulator of g 43.6 14 0.00046 30.9 2.7 34 64-97 84-117 (468)
72 3uk6_A RUVB-like 2; hexameric 42.2 72 0.0025 24.6 6.7 63 32-94 261-329 (368)
73 2dzn_B 26S protease regulatory 41.8 33 0.0011 21.5 3.8 45 46-94 23-67 (82)
74 3fwb_A Cell division control p 39.8 77 0.0026 20.7 8.5 48 65-112 95-148 (161)
75 3pxi_A Negative regulator of g 38.2 17 0.0006 31.9 2.7 39 64-102 10-50 (758)
76 3k1j_A LON protease, ATP-depen 35.9 97 0.0033 26.5 7.0 30 65-94 345-374 (604)
77 3aji_B S6C, proteasome (prosom 34.5 40 0.0014 21.0 3.3 35 55-93 35-69 (83)
78 3pxi_A Negative regulator of g 34.4 22 0.00076 31.3 2.7 34 64-97 84-117 (758)
79 1r6b_X CLPA protein; AAA+, N-t 33.3 31 0.0011 30.2 3.5 34 64-97 84-117 (758)
80 1qvr_A CLPB protein; coiled co 33.0 29 0.00099 31.1 3.3 33 64-96 10-42 (854)
81 3vlf_B 26S protease regulatory 32.1 49 0.0017 21.1 3.5 35 55-93 35-69 (88)
82 2qby_B CDC6 homolog 3, cell di 31.0 1.8E+02 0.0061 22.2 7.6 61 32-94 199-269 (384)
83 2c9o_A RUVB-like 1; hexameric 30.1 55 0.0019 26.9 4.3 63 31-93 367-435 (456)
84 1lv7_A FTSH; alpha/beta domain 30.0 52 0.0018 24.2 3.8 27 67-93 224-250 (257)
85 2krk_A 26S protease regulatory 29.8 62 0.0021 20.7 3.7 38 52-93 42-79 (86)
86 1f6v_A DNA transposition prote 27.6 16 0.00055 24.7 0.5 28 65-93 50-77 (91)
87 1ixz_A ATP-dependent metallopr 26.7 62 0.0021 23.7 3.7 26 67-92 228-253 (254)
88 1iy2_A ATP-dependent metallopr 26.6 60 0.0021 24.3 3.7 26 67-92 252-277 (278)
89 3h4m_A Proteasome-activating n 26.5 64 0.0022 23.9 3.8 29 65-93 228-256 (285)
90 3f8t_A Predicted ATPase involv 25.7 1.4E+02 0.0048 25.9 6.2 82 29-112 393-498 (506)
91 3n22_A Protein S100-A2; EF-han 25.2 92 0.0031 20.0 4.0 52 60-111 6-69 (98)
92 2r44_A Uncharacterized protein 25.1 1.3E+02 0.0046 22.8 5.6 28 66-93 268-295 (331)
93 1jba_A GCAP-2, protein (guanyl 24.7 1.5E+02 0.005 20.5 5.3 40 64-103 146-185 (204)
94 2r2i_A Guanylyl cyclase-activa 23.6 1.3E+02 0.0044 20.7 4.8 39 65-103 130-168 (198)
95 1s1e_A KV channel interacting 23.5 1.1E+02 0.0038 22.0 4.6 38 66-103 173-210 (224)
96 2ly8_A Budding yeast chaperone 22.8 2E+02 0.0068 20.1 5.5 42 45-86 24-68 (121)
97 1fnn_A CDC6P, cell division co 22.5 2.6E+02 0.0088 21.2 6.8 61 33-93 196-272 (389)
98 1top_A Troponin C; contractIle 20.4 1.8E+02 0.0062 18.7 7.3 83 27-111 50-147 (162)
99 1bjf_A Neurocalcin delta; calc 20.2 90 0.0031 21.2 3.3 41 67-108 148-188 (193)
No 1
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=4.2e-48 Score=286.42 Aligned_cols=128 Identities=71% Similarity=1.112 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhh
Q 032523 8 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRH 87 (139)
Q Consensus 8 ~~~~~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~h 87 (139)
++|||+.++++.+|+|+|++|+|||+||+|||+++++++||+++|+|||+||||||++||||+|+|+|+++++++|+|+|
T Consensus 4 ~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~h 83 (131)
T 1id3_C 4 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRH 83 (131)
T ss_dssp ------------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred CCCCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHH
Confidence 56777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcHHHHhhhcCceecCCccCCcccccccccccCCCCccCCccCCCC
Q 032523 88 IQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 139 (139)
Q Consensus 88 I~~AI~nD~EL~~L~~~~~Ia~ggv~P~i~~~l~~~k~~~~~~~~~~~~~~~ 139 (139)
|++||+||+|||+||+++||++|||+|+||++|++++.+++ ..++|++
T Consensus 84 I~lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~----~~~~~~~ 131 (131)
T 1id3_C 84 LQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKA----TKASQEL 131 (131)
T ss_dssp HHHHHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSC----C------
T ss_pred HHHHHhccHHHHHHhcCceecCCccCCCccHHHcCcccccc----ccccccC
Confidence 99999999999999999999999999999999999998766 2556653
No 2
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=6.1e-48 Score=284.88 Aligned_cols=124 Identities=70% Similarity=1.114 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032523 1 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 80 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~ 80 (139)
|||.| +++|| ++++.+|+|+|++|+|||+||+|||+++++++||+++|+|||+||||||++||||+|+|.|+++++
T Consensus 1 m~~~~-~~~~~---~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~ 76 (129)
T 1tzy_A 1 MSGRG-KQGGK---ARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKK 76 (129)
T ss_dssp -----------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCC-CCCCC---CCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88877 43444 677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHhhhCcHHHHhhhcCceecCCccCCcccccccccccCCC
Q 032523 81 NRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKG 128 (139)
Q Consensus 81 krItP~hI~~AI~nD~EL~~L~~~~~Ia~ggv~P~i~~~l~~~k~~~~ 128 (139)
++|+|+||++||+||+|||+||+++||++|||+|+||++|+++|.+++
T Consensus 77 krItp~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 77 TRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp SEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred CeEcHHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 999999999999999999999999999999999999999999987655
No 3
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=5e-47 Score=278.01 Aligned_cols=118 Identities=72% Similarity=1.094 Sum_probs=105.1
Q ss_pred CCCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHH
Q 032523 11 RGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL 90 (139)
Q Consensus 11 ~~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~ 90 (139)
||+.++++.+|+|+|++|+|||+||+|||+++++++||+++|+|||+||||||++||||+|+|.|++.++++|+|+||++
T Consensus 5 ~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~l 84 (123)
T 2nqb_C 5 KGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 84 (123)
T ss_dssp --------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 45557778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCcHHHHhhhcCceecCCccCCcccccccccccCCC
Q 032523 91 AVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKG 128 (139)
Q Consensus 91 AI~nD~EL~~L~~~~~Ia~ggv~P~i~~~l~~~k~~~~ 128 (139)
||+||+|||+||+++||++|||+|+||++|+++|.+++
T Consensus 85 AI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~~ 122 (123)
T 2nqb_C 85 AIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 122 (123)
T ss_dssp HHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC----
T ss_pred HHhccHHHHHHhcCceeCCCCcCCCccHHHcCcccccC
Confidence 99999999999999999999999999999999987654
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=5.9e-47 Score=276.62 Aligned_cols=113 Identities=65% Similarity=0.979 Sum_probs=106.3
Q ss_pred CCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 14 PKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 14 ~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
+++++.+|+|+|++|+|||+||+|||++++|++||+++|+|||+||||||++||||+|+|.|+++++++|+|+||++||+
T Consensus 7 ~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 7 KKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp ---CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHhhhcCceecCCccCCcccccccccccC
Q 032523 94 NDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 126 (139)
Q Consensus 94 nD~EL~~L~~~~~Ia~ggv~P~i~~~l~~~k~~ 126 (139)
||+|||+||+++||++|||+|+||++|+++|.+
T Consensus 87 nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 87 NDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred cCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 999999999999999999999999999998753
No 5
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=9.3e-47 Score=284.17 Aligned_cols=124 Identities=68% Similarity=1.076 Sum_probs=104.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032523 1 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 80 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~ 80 (139)
|||.| +.+ +.++++.+|+|+|++|+|||+||+|||++++|++||+++|+|||+||||||++||||+|+|.|++.++
T Consensus 20 ~~~~~-~~~---~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~kr 95 (149)
T 2f8n_K 20 MSGRG-KQG---GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKK 95 (149)
T ss_dssp ------------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCC-CCC---CCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67666 322 33677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHhhhCcHHHHhhhcCceecCCccCCcccccccccccCCC
Q 032523 81 NRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKG 128 (139)
Q Consensus 81 krItP~hI~~AI~nD~EL~~L~~~~~Ia~ggv~P~i~~~l~~~k~~~~ 128 (139)
++|+|+||++||+||+|||+||++++|++|||+|+||++|++++.+++
T Consensus 96 krItprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 96 TRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp SEECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred CcCcHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence 999999999999999999999999999999999999999999998766
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=1.1e-45 Score=272.42 Aligned_cols=120 Identities=58% Similarity=0.883 Sum_probs=99.5
Q ss_pred CCCCC-CCCCCCCcCcccccCcccchHHHHHHHHhCCCc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Q 032523 8 KGGRG-KPKSTKSISRSHKAGLQFPVGRIARFLKAGKYA-DRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVP 85 (139)
Q Consensus 8 ~~~~~-~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~-~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP 85 (139)
+++|+ +..+++.+|+|+|++|+|||+||+|||+++.++ +||+++|+|||+||||||++||||+|+|.|++.++++|+|
T Consensus 5 ~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp 84 (128)
T 1f66_C 5 KAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 84 (128)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECH
T ss_pred CCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcH
Confidence 44542 334568899999999999999999999999887 5999999999999999999999999999999999999999
Q ss_pred hhHHHhhhCcHHHHhhhcCceecCCccCCcccccccccccCCC
Q 032523 86 RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKG 128 (139)
Q Consensus 86 ~hI~~AI~nD~EL~~L~~~~~Ia~ggv~P~i~~~l~~~k~~~~ 128 (139)
+||++||+||+|||+||+ +||++|||+|+||++|+++|.+++
T Consensus 85 rhi~lAI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~~ 126 (128)
T 1f66_C 85 RHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126 (128)
T ss_dssp HHHHHHHHHSHHHHHHCC-SEETTCCCCCCCCGGGC-------
T ss_pred HHHHHHHhccHHHhhhhc-ceecCCccCCCCCHHhcCcccccC
Confidence 999999999999999995 599999999999999999987654
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=5.3e-36 Score=233.44 Aligned_cols=98 Identities=63% Similarity=0.970 Sum_probs=94.4
Q ss_pred CCcCcccccCcccchHHHHHHHHhCCCc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcH
Q 032523 18 KSISRSHKAGLQFPVGRIARFLKAGKYA-DRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 18 ~~~s~ssragL~fPvsri~R~Lk~~~~~-~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~ 96 (139)
+.+|+|+|+||+|||+||+|||++++++ +||+++|+|||+||||||++||+|+|+|.|++.++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 5679999999999999999999999887 699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceecCCccCCcc
Q 032523 97 ELSKLLGTVTIANGGVLPNI 116 (139)
Q Consensus 97 EL~~L~~~~~Ia~ggv~P~i 116 (139)
|||+||+ ++|++|||+|+|
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999996 699999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.90 E-value=1.1e-24 Score=202.25 Aligned_cols=101 Identities=25% Similarity=0.411 Sum_probs=81.5
Q ss_pred CcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHH
Q 032523 19 SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEEL 98 (139)
Q Consensus 19 ~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL 98 (139)
..++|+||||+|||+||+|+| ++.|++||+.+|||||+||||||++||||+|||+|++.++.+|+|+||++||+||+||
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL 172 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVL 172 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSH
T ss_pred hhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHH
Confidence 468999999999999999999 7789999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCceecCCccCCccccccc
Q 032523 99 SKLLGTVTIANGGVLPNIHQNLL 121 (139)
Q Consensus 99 ~~L~~~~~Ia~ggv~P~i~~~l~ 121 (139)
..||++. ...+|++|+......
T Consensus 173 ~~l~~~d-ee~~~~lp~~~~~~~ 194 (1049)
T 3ksy_A 173 MDMFHQD-VEDINILSLTDEEPS 194 (1049)
T ss_dssp HHHCC------------------
T ss_pred HHHHhhc-cccccCCCCccccCc
Confidence 9999764 456778887665433
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.90 E-value=3.3e-24 Score=151.03 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=62.4
Q ss_pred cccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhh
Q 032523 22 RSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKL 101 (139)
Q Consensus 22 ~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L 101 (139)
++.+++++||++||+|+|+.+.+..||+.+|++|+++++|||+.||+++|++.|.+.++++|+|+||..||++|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q 032523 102 L 102 (139)
Q Consensus 102 ~ 102 (139)
+
T Consensus 84 ~ 84 (98)
T 1jfi_A 84 K 84 (98)
T ss_dssp -
T ss_pred H
Confidence 9
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.81 E-value=4.2e-20 Score=129.66 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=71.9
Q ss_pred cccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhh
Q 032523 24 HKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLL 102 (139)
Q Consensus 24 sragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~ 102 (139)
.-.+++||++||+|+|+.+.+..||+.+|++|+++++|||+.+|++.|++.|.+.++++|+++||..||++|++|++|.
T Consensus 14 ~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3457889999999999999888999999999999999999999999999999999999999999999999999999998
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.79 E-value=2.1e-19 Score=130.40 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=73.4
Q ss_pred CcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhh
Q 032523 27 GLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLL 102 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~ 102 (139)
..+||++||+|+|+.+.+..+|+.+|++|+++++|||+.+|+++|++.|...++++|+|+||..||.+|++|++|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 4569999999999999899999999999999999999999999999999999999999999999999999999987
No 12
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.78 E-value=4.8e-19 Score=125.51 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=71.0
Q ss_pred CCCCCCCCCC----CCCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 032523 1 MSSAGSTKGG----RGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAAR 76 (139)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~ 76 (139)
|||.| ++| ||+++++.++++++..+ ||++.|+|+++.. ...||+.++..+|+.+|||++.+|++.|.+.|+
T Consensus 1 m~g~g--k~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ 75 (103)
T 1tzy_D 1 MSGRG--KGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75 (103)
T ss_dssp ----------------------CCCCCGGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC--CCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 344 45667888899999999 9999999999998 568999999999999999999999999999999
Q ss_pred hcCCCccchhhHHHhhhCc
Q 032523 77 DNKKNRIVPRHIQLAVRND 95 (139)
Q Consensus 77 ~~~~krItP~hI~~AI~nD 95 (139)
+.++++|+++||.+|+++.
T Consensus 76 hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 76 HAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HTTCSEECHHHHHHHHHHT
T ss_pred HcCCCcCCHHHHHHHHHHc
Confidence 9999999999999999865
No 13
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.77 E-value=5e-19 Score=125.52 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=63.0
Q ss_pred CCCCCCCCCCC----CCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 032523 1 MSSAGSTKGGR----GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAAR 76 (139)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~ 76 (139)
|||.| ++|| |+.+++.++++++.++ ||++.|+|+++.. ...||+.++.++|+.+|||++.+|++.|.+.|+
T Consensus 1 m~~~g--k~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ 75 (103)
T 2yfw_B 1 MSGRG--KGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTE 75 (103)
T ss_dssp ---------------------------------CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC--CCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 3554 4667888899999999 9999999999998 568999999999999999999999999999999
Q ss_pred hcCCCccchhhHHHhhhCcH
Q 032523 77 DNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 77 ~~~~krItP~hI~~AI~nD~ 96 (139)
+.++++|+++||.+|+++..
T Consensus 76 hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 76 HAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HTTCSEECHHHHHHHHHHHC
T ss_pred HcCCCcCcHHHHHHHHHHcC
Confidence 99999999999999998654
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.73 E-value=1.8e-18 Score=128.81 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=62.8
Q ss_pred CCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCccchhhHHHhhhCcH
Q 032523 18 KSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAA-RDNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 18 ~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A-~~~~~krItP~hI~~AI~nD~ 96 (139)
+..+++.+..++||++||+|+|+.+.+..+|+.+|+++++.++|||+.+|++.|++.| ...++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 3578888999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q 032523 97 ELSKLL 102 (139)
Q Consensus 97 EL~~L~ 102 (139)
+|+||.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999998
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.45 E-value=1.3e-13 Score=104.00 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=68.3
Q ss_pred cccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCc
Q 032523 24 HKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 95 (139)
Q Consensus 24 sragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD 95 (139)
.+.++.||++.|.|+|++. +..|||++|.++|+.+||||+.+|+..|.+.|.+.+|++|+++||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4788999999999999999 8999999999999999999999999999999999999999999999999875
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.41 E-value=6.8e-13 Score=93.84 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=66.3
Q ss_pred CCCCCCCCCCcCcccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHH
Q 032523 10 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQ 89 (139)
Q Consensus 10 ~~~~~~~~~~~s~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~ 89 (139)
||||++|..++.+.+..+ +|.+.|.|+++.. ...|||.++...|..+|||++.+|+..|...|++.+|++|+++||.
T Consensus 11 ~~~g~kr~~k~~r~~i~~--ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~ 87 (102)
T 1id3_B 11 GKGGAKRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVV 87 (102)
T ss_dssp -------------CCGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCccchHHHHHHhccCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHH
Confidence 466888888888888887 8999999999987 7899999999999999999999999999999999999999999999
Q ss_pred HhhhCc
Q 032523 90 LAVRND 95 (139)
Q Consensus 90 ~AI~nD 95 (139)
+|++..
T Consensus 88 ~ALkr~ 93 (102)
T 1id3_B 88 YALKRQ 93 (102)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999854
No 17
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.29 E-value=8.9e-12 Score=81.41 Aligned_cols=64 Identities=30% Similarity=0.437 Sum_probs=61.6
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.||.++|.|+|++. +..||+.+|...|..++|+|+.+|.+.|...|.+.+|++|+|+||.+|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 48999999999999 77899999999999999999999999999999999999999999999986
No 18
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.28 E-value=9.3e-12 Score=81.98 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
.||++.|.|++++. +..||+.++...|..++|+++.+|++.|...|.+.+|++|+++||.+|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 58999999999987 788999999999999999999999999999999999999999999999875
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.09 E-value=2.4e-10 Score=78.92 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=63.0
Q ss_pred CcccchHHHHHHHHhC-CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 27 GLQFPVGRIARFLKAG-KYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~-~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.+.||.++|.|+|++. ....||+.+|...|..+.|.|+.+|...|...|.+.+|++|+++||..|++
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 5789999999999998 445799999999999999999999999999999999999999999999997
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.96 E-value=2.1e-09 Score=71.85 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=61.0
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.||.+.|.|+|++.-...+|+.+|...|..++|.|+.+|...|...|.+.++++|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 59999999999976456799999999999999999999999999999999999999999999985
No 21
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.95 E-value=2.9e-09 Score=72.50 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=65.0
Q ss_pred cccccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCc
Q 032523 22 RSHKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 95 (139)
Q Consensus 22 ~ssragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD 95 (139)
+.+..+ +|.+.|.|+++.. +..|||.++...|..++||++.+|+..|...+.+.+|++|+++||.+|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 344445 8999999999988 8899999999999999999999999999999999999999999999999865
No 22
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.94 E-value=9e-10 Score=80.60 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=64.2
Q ss_pred CcccchHHHHHHHHh-CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhh
Q 032523 27 GLQFPVGRIARFLKA-GKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKL 101 (139)
Q Consensus 27 gL~fPvsri~R~Lk~-~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L 101 (139)
.+.||+++|.|+|++ .....+|+.+|...|+.++|.|+.+|...|...|.+.+|++|+++||..|+...+-+++|
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 467999999999996 445789999999999999999999999999999999999999999999999876544443
No 23
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.90 E-value=5.2e-09 Score=69.37 Aligned_cols=65 Identities=9% Similarity=0.126 Sum_probs=62.1
Q ss_pred cccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 28 LQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 28 L~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
-.||++.|+++.+.. +..+|++++...|+.-+||-+.||++.|.+.+++.+|++++.+||+.|++
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 469999999999988 88999999999999999999999999999999999999999999999975
No 24
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.82 E-value=8.2e-09 Score=77.74 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=61.3
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhh
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAV 92 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI 92 (139)
-||.+.|.|+|++.-+..|||.+|...|+.++|.|+.+|...|.+.|.+.+|++|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4899999999999856699999999999999999999999999999999999999999999998
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.62 E-value=2.9e-08 Score=70.89 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=62.1
Q ss_pred CcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHH
Q 032523 27 GLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEEL 98 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL 98 (139)
.+.||.+-|.|+++.. ...|||.++...|..+++.++.+|...|...|++.+|++|+++||.+|++.+..+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 3568999999999998 7889999999999999999999999999999999999999999999999865543
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.57 E-value=2.2e-07 Score=61.16 Aligned_cols=61 Identities=18% Similarity=0.066 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 33 GRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 33 sri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
-.|.++|++. ++.+++..++..|.-.+|-++.+|+..|..+|.+.|+++|+.+||++||..
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3588999987 899999999999999999999999999999999999999999999999974
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.51 E-value=2.5e-07 Score=71.18 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=67.5
Q ss_pred cccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhh
Q 032523 24 HKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLL 102 (139)
Q Consensus 24 sragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~ 102 (139)
.-..+.||++.|.|+|++.--..||+.+|...|..+++-|+..|...|...|.+.+|++|+++||..|+. +-+|..++
T Consensus 10 ~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred chhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 3446789999999999988225799999999999999999999999999999999999999999999997 55555444
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.3e-06 Score=60.29 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=65.9
Q ss_pred ccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhcC
Q 032523 25 KAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGT 104 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 104 (139)
|+.|.+-|++|-.=.-+ .....|+.++...|+.+++..+.+|.+-+...|++.||++|+++||.++++.++.|..++.+
T Consensus 11 Kaal~~~V~ki~~e~~~-~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLS-SEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHHSC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH-hcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 45566777776654421 12347999999999999999999999999999999999999999999999999999998754
No 29
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.22 E-value=4.1e-06 Score=56.31 Aligned_cols=66 Identities=24% Similarity=0.205 Sum_probs=59.0
Q ss_pred cccchHHHHHHHHhC----CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 28 LQFPVGRIARFLKAG----KYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 28 L~fPvsri~R~Lk~~----~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
|.+|...+.|++++- ....|++++|...|.-+.|.++-+++|-+...|.+.++.+|+|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 567888888888765 234699999999999999999999999999999999999999999999975
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.22 E-value=2.1e-06 Score=61.59 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=63.7
Q ss_pred ccCcccchHHHHHHHHhCCCccc---cCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhh
Q 032523 25 KAGLQFPVGRIARFLKAGKYADR---VGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKL 101 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~~~~R---Vs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L 101 (139)
++.|.+.|++|-+ +. ...| |+.++...|+.+++.++.+|.+-+...|++.||++|+++||.++++.++.|..+
T Consensus 26 Kaal~y~V~rIvk---e~-gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~ 101 (113)
T 4dra_A 26 KAAVHYTVGCLCE---EV-ALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKY 101 (113)
T ss_dssp HHHHHHHHHHHHH---HH-HHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHH---HH-HHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHH
Confidence 4556677666544 33 3334 999999999999999999999999999999999999999999999999999887
Q ss_pred hc
Q 032523 102 LG 103 (139)
Q Consensus 102 ~~ 103 (139)
+.
T Consensus 102 l~ 103 (113)
T 4dra_A 102 IT 103 (113)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 31
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.21 E-value=3.4e-06 Score=57.36 Aligned_cols=66 Identities=20% Similarity=0.103 Sum_probs=59.4
Q ss_pred cccchHHHHHHHHhCC------CccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 28 LQFPVGRIARFLKAGK------YADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 28 L~fPvsri~R~Lk~~~------~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
|-+|...+.|++++-. ...|++++|...|.-+.|.++-+++|-+...|.+.++.+|.|.||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 4578888888888653 35699999999999999999999999999999999999999999999875
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.16 E-value=2.7e-06 Score=60.45 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=63.9
Q ss_pred ccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhc
Q 032523 25 KAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 103 (139)
|+.|.+-|++|-+-.-.. ...|++.++...|+.+++.++.+|..-+...|++.||++|+++||.++++.++.|...+.
T Consensus 18 Kaal~~~V~rI~~~~g~~-~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAED-KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 445666666655422211 235999999999999999999999999999999999999999999999999999877664
No 33
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.02 E-value=1e-05 Score=56.82 Aligned_cols=68 Identities=25% Similarity=0.163 Sum_probs=58.0
Q ss_pred cCcccchHHHHHHHHhCC-------CccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 26 AGLQFPVGRIARFLKAGK-------YADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 26 agL~fPvsri~R~Lk~~~-------~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.+|.+|...|.|++++-. ...|++++|...|.-+.|.++-+++|-+...|.+.++.+|+|.||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 578899999999998763 15699999999999999999999999999999999999999999999864
No 34
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.01 E-value=8.2e-06 Score=60.44 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=66.2
Q ss_pred ccCcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhcC
Q 032523 25 KAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGT 104 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 104 (139)
++.|.+-|++|-.=.-.. ....|+.++...|+.+++.++.+|..-+...|+|.||++|+++||.++++.++.|..++.+
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 456677777766433222 2347999999999999999999999999999999999999999999999999999888863
No 35
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.00 E-value=8.8e-06 Score=61.24 Aligned_cols=73 Identities=18% Similarity=0.060 Sum_probs=63.2
Q ss_pred ccCcccchHHHHHHHHhCC------CccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH
Q 032523 25 KAGLQFPVGRIARFLKAGK------YADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE 97 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~------~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E 97 (139)
-.+|.||...|.|++++-. ...|++.+|...|.-+.|.++-+|+|-+...|.+.++.+|+|.||++|.+--.|
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 3568899999999998753 256999999999999999999999999999999999999999999999864333
No 36
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.00 E-value=1e-05 Score=59.92 Aligned_cols=70 Identities=19% Similarity=0.081 Sum_probs=61.8
Q ss_pred ccCcccchHHHHHHHHhCC------CccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 25 KAGLQFPVGRIARFLKAGK------YADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~------~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
-.+|.+|...|.|++++-. ...|++++|...|.-+.|.++-+++|-+...|.+.++.+|+|.||++|.+-
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArri 132 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence 3568899999999998753 357999999999999999999999999999999999999999999999763
No 37
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.96 E-value=2e-05 Score=57.40 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=61.7
Q ss_pred CcccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh--CcHHH
Q 032523 27 GLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR--NDEEL 98 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~--nD~EL 98 (139)
.-.|.+ .|+++|++..-...|+..|...|...++.++..|...|...|+.+++++|++++|+.|++ -..||
T Consensus 35 ~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 107 (126)
T 1tzy_B 35 KESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (126)
T ss_dssp CCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHH
T ss_pred cccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHH
Confidence 345666 799999988555589999999999999999999999999999999999999999999986 33444
No 38
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.91 E-value=3e-05 Score=57.21 Aligned_cols=68 Identities=25% Similarity=0.219 Sum_probs=61.2
Q ss_pred cCcccchHHHHHHHHhC----CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 26 AGLQFPVGRIARFLKAG----KYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 26 agL~fPvsri~R~Lk~~----~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.+|.||...|.|++++- ....|++++|...|.-+.|.++-+++|.+...|.+.++.+|.|.||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 46779999999998765 134699999999999999999999999999999999999999999999975
No 39
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=3.4e-05 Score=55.84 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 43 KYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 43 ~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
.++.|||+++-..+..+||.++.+|+..|..++.+.+|++|+..||..|++.
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 3677999999999999999999999999999999999999999999999863
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.74 E-value=6.2e-05 Score=54.60 Aligned_cols=69 Identities=25% Similarity=0.236 Sum_probs=60.1
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh--CcHHH
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR--NDEEL 98 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~--nD~EL 98 (139)
.|. -.|+++|++..-...|+..|...|...++.++..|...|.+.|+.+++++|++++|+.|++ -..||
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 104 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGEL 104 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHH
Confidence 354 5799999988555699999999999999999999999999999999999999999999986 33444
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=3e-05 Score=61.74 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCc
Q 032523 36 ARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 95 (139)
Q Consensus 36 ~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD 95 (139)
.|+.+.+ ++.|||.++...+..+||.++.+|+..|..+|.+.++++|++.||.+|++.-
T Consensus 168 ~RlaRrg-GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 168 EEDGDKG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTSCCT-TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHhhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 3666665 8899999999999999999999999999999999999999999999998743
No 42
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.32 E-value=0.00061 Score=46.69 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccchhhHHHhhh
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDN-KKNRIVPRHIQLAVR 93 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~-~~krItP~hI~~AI~ 93 (139)
.||-..|+|++..- ....|+.+..+.|+++--.|+.||+|.|....... ....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 47888899999876 67799999999999999999999999999988664 456899999999975
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.22 E-value=0.00073 Score=51.97 Aligned_cols=61 Identities=26% Similarity=0.258 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 33 GRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 33 sri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
..|+|+|++..-...|+.+|..+|...+..++..|...|.+.+..+++++||+++|+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999988555789999999999999999999999999999999999999999999997
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.90 E-value=0.0046 Score=41.95 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=56.8
Q ss_pred ccCcccchHHHHHHHHhCC--CccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHh
Q 032523 25 KAGLQFPVGRIARFLKAGK--YADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLA 91 (139)
Q Consensus 25 ragL~fPvsri~R~Lk~~~--~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~A 91 (139)
.++..||..-|.|+|+..- ...||+.+|...++..|+-|+.|-+-+|...|...+...|..+||+..
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 3466899999999999652 223999999999999999999999999999998888889999999864
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.74 E-value=0.0049 Score=41.48 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=56.9
Q ss_pred CcccchHHHHHHHHhCCC--ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHh
Q 032523 27 GLQFPVGRIARFLKAGKY--ADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLA 91 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~~~--~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~A 91 (139)
...||-.-|.|+|+..-. ..||+.+|...++..|+-|+.|-+.+|...|...+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 457999999999997522 34999999999999999999999999999998888889999999873
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.96 E-value=0.026 Score=37.54 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=61.5
Q ss_pred cccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCc
Q 032523 28 LQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 95 (139)
Q Consensus 28 L~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD 95 (139)
-.|+-.++..++++-.....+..++-..|..+.+-|+..+++.|...|++.+..++.+.||++....+
T Consensus 4 ~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 35678889999998877789999999999999999999999999999999999999999999887643
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.11 Score=41.22 Aligned_cols=66 Identities=24% Similarity=0.134 Sum_probs=53.7
Q ss_pred CcccchHHHHHHHHhC----CC---ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhh
Q 032523 27 GLQFPVGRIARFLKAG----KY---ADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAV 92 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~----~~---~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI 92 (139)
.|.+|-.++.|++++- .. ..|..++|...|--+-|.++-.++|-+.-.|.+.++-+|.|.|+++|-
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 4666766777766543 11 348999999999999999999999999999999999999999999984
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=89.52 E-value=1.1 Score=33.25 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=51.9
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHH
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL 90 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~ 90 (139)
.+++.+++|+++.. ..--|..+-.--+..++|--+.+++..|..-|+.++|..|.|.||-.
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 47889999999987 44466676677788888999999999999999999999999999753
No 49
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=88.08 E-value=0.56 Score=32.58 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 103 (139)
+.++|+.|.+.|...+...|+|+||-+++-.+++...++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4688999999999999999999999999988877666664
No 50
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=83.72 E-value=1.1 Score=31.17 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcH
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~ 96 (139)
+.++|+.|...|...+...|+|+||-+++-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 467899999999999999999999999997665
No 51
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=83.43 E-value=4.7 Score=27.27 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=39.5
Q ss_pred cchHHHHHHHHhCCCc--cccCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032523 30 FPVGRIARFLKAGKYA--DRVGAGAPVYLSAVLEYLAAEVLELAGNAARD 77 (139)
Q Consensus 30 fPvsri~R~Lk~~~~~--~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~ 77 (139)
+|..-+.|+|+..-.. -||+.+|...++..++-|+.|-+-+|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778899999855222 39999999999999999999999999765544
No 52
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=81.99 E-value=0.82 Score=32.26 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcH--HHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE--ELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 103 (139)
+.++|+.|.+.|...+...|+|+||-+|+-.++ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 468899999999999999999999999998654 3455553
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=81.69 E-value=1 Score=31.42 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH--HHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE--LSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E--L~~L~~ 103 (139)
+.++|+.|.+.|...+...|+|+||-+++-.+++ ...++.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 4678899999999999999999999999976543 444443
No 54
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=81.20 E-value=1.4 Score=33.28 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=52.4
Q ss_pred ccchHHHHHHHHhCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHH
Q 032523 29 QFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL 90 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~ 90 (139)
.+++.+++|+++.. ..--|..+-.--+..++|--+.++|..|..-|+.++|..|.|.||-+
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI 86 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI 86 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 78999999999987 44466676667788888989999999999999999999999999753
No 55
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=80.52 E-value=1.7 Score=30.56 Aligned_cols=40 Identities=33% Similarity=0.311 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCc--HHHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRND--EELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD--~EL~~L~~ 103 (139)
+.++|+.|.+.|...+...|+|+||-+|+-.| .....++.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 46789999999999999999999999999765 44555554
No 56
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.85 E-value=1.7 Score=30.59 Aligned_cols=40 Identities=38% Similarity=0.491 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH--HHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE--LSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E--L~~L~~ 103 (139)
+..+|+.|...|...+...|+++||-+|+-.|++ ...++.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4678899999999999999999999999986543 455553
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=77.28 E-value=2.2 Score=29.90 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHhhhCcH--HHHhhhc
Q 032523 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDE--ELSKLLG 103 (139)
Q Consensus 65 ~EILelAg~~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 103 (139)
..+|+.|...|...+...|+++||-+|+-.|+ ....++.
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 57888999999999999999999999997554 4555554
No 58
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=76.82 E-value=2 Score=31.67 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcH--HHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE--ELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 103 (139)
+.++|+.|.+.|...+...|+|+||-+|+-.++ ....++.
T Consensus 29 a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 29 SKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 467889999999999999999999999998764 3455553
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=73.49 E-value=3.3 Score=28.48 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH--HHhhh
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE--LSKLL 102 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E--L~~L~ 102 (139)
+..+|+.|...|...+...|.++||-+|+-.+++ ...++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL 124 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLL 124 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHH
Confidence 4578899999999999999999999999986653 34444
No 60
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=71.48 E-value=5.6 Score=27.39 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhC-cHHHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRN-DEELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~n-D~EL~~L~~ 103 (139)
+..+|+.|...|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 5678899999999989999999999999984 444455553
No 61
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=68.69 E-value=4.6 Score=29.71 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHh-hcCCCccchhhHHHhhhCcH
Q 032523 65 AEVLELAGNAAR-DNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 65 ~EILelAg~~A~-~~~~krItP~hI~~AI~nD~ 96 (139)
.++|+.|..+|. ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 578899999999 99999999999999998777
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=66.19 E-value=3.8 Score=28.45 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcH
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~ 96 (139)
+..+|+.|...|...+...|.++||-+|+-.++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 467889999999999999999999999997554
No 63
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=61.32 E-value=3.5 Score=21.36 Aligned_cols=17 Identities=41% Similarity=0.825 Sum_probs=10.3
Q ss_pred CCCCCCCCC----CCCCCCCCCc
Q 032523 2 SSAGSTKGG----RGKPKSTKSI 20 (139)
Q Consensus 2 ~~~~~~~~~----~~~~~~~~~~ 20 (139)
||+| ++| ||++++..++
T Consensus 2 sgrg--kggkglgkggakrhrkv 22 (26)
T 4gqb_C 2 SGRG--KGGKGLGKGGAKRHRKV 22 (26)
T ss_pred CCCC--cCCcccCccchhhhccc
Confidence 5666 444 6677776554
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=61.04 E-value=32 Score=26.41 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=45.5
Q ss_pred hHHHHHHHHhC----CCccccCCchHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 32 VGRIARFLKAG----KYADRVGAGAPVYLSAVLE------YLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 32 vsri~R~Lk~~----~~~~RVs~~A~vyLaAvLE------yL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
...+..+++.. .....++.++.-+++.... ..+..+++.++..|...+...|+.+|++.++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 45566666533 1224678888888887777 45668888888888877888999999998875
No 65
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=59.65 E-value=18 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhcC
Q 032523 58 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGT 104 (139)
Q Consensus 58 AvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 104 (139)
+.+. .+.++++.-+..-...|.+-|+|.++..-|..|.+-..+|.+
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 4444 778888888888888999999999999999999999999965
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=59.11 E-value=10 Score=33.29 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 103 (139)
+.++|+.|.+.|...+...|+|+||-+++-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999999999998887766664
No 67
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=49.85 E-value=20 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHHhhcCCCccchhhHHHhhh
Q 032523 71 AGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 71 Ag~~A~~~~~krItP~hI~~AI~ 93 (139)
|...|...+...|+.+|+..|+.
T Consensus 49 A~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 49 AGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Confidence 33444445677899999999985
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.97 E-value=52 Score=25.12 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=42.2
Q ss_pred hHHHHHHHHhC----CCccccCCchHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 32 VGRIARFLKAG----KYADRVGAGAPVYLSAVLE------YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 32 vsri~R~Lk~~----~~~~RVs~~A~vyLaAvLE------yL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
...+..+++.. .....++.++.-+++.... ..+.++++.++..|...+...|+.+|++.++..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 35566666542 1123566777777776665 234457788888887778889999999987753
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=43.70 E-value=43 Score=25.59 Aligned_cols=47 Identities=13% Similarity=-0.046 Sum_probs=33.9
Q ss_pred ccCCchHHHHHHHHHH-------HHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 47 RVGAGAPVYLSAVLEY-------LAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 47 RVs~~A~vyLaAvLEy-------L~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.++.++.-||.....- -+..+++.|...|...++..|+++|+..++.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 6777777776655443 2346777777788778888899999998774
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.66 E-value=13 Score=30.93 Aligned_cols=39 Identities=33% Similarity=0.317 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCc--HHHHhhh
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRND--EELSKLL 102 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD--~EL~~L~ 102 (139)
+.++|+.|...|...+...|+|+||-+++-.+ .....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 46788999999999999999999999999754 3444444
No 71
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.57 E-value=14 Score=30.87 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE 97 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E 97 (139)
+.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3677899999999999999999999999986653
No 72
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=42.16 E-value=72 Score=24.57 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=41.8
Q ss_pred hHHHHHHHHhCC--CccccCCchHHHHHHHHH-H---HHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 32 VGRIARFLKAGK--YADRVGAGAPVYLSAVLE-Y---LAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 32 vsri~R~Lk~~~--~~~RVs~~A~vyLaAvLE-y---L~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
...+..+|+..- ....++.++..+|+...+ . .+..+++.|...|...++..|+.+|++.++..
T Consensus 261 ~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 261 EKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 355555555321 123577777777777666 2 23456677777777778889999999998863
No 73
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=41.84 E-value=33 Score=21.52 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=31.5
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 46 DRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 46 ~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
..+...+.-|-.|=|+.++.|-...|. ..++..|+.+|+..|+..
T Consensus 23 ~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 23 DSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 456666666777778877776554443 345678999999988864
No 74
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=39.78 E-value=77 Score=20.66 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHhhh------CcHHHHhhhcCceecCCcc
Q 032523 65 AEVLELAGNAARDNKKNRIVPRHIQLAVR------NDEELSKLLGTVTIANGGV 112 (139)
Q Consensus 65 ~EILelAg~~A~~~~~krItP~hI~~AI~------nD~EL~~L~~~~~Ia~ggv 112 (139)
.+.+..+-+.....+...|+..++..++. .++++..+|........|.
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 148 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGE 148 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSS
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence 34455555655566777899999998876 5678888887554444443
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.16 E-value=17 Score=31.92 Aligned_cols=39 Identities=33% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCc--HHHHhhh
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRND--EELSKLL 102 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD--~EL~~L~ 102 (139)
+.++|+.|.+.|...+...|+|+||-+++-.+ .....++
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 46788999999999999999999999999754 3444444
No 76
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=35.89 E-value=97 Score=26.46 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 65 ~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
..+++.|...|...++..|+++|+..|+..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 357788888888888999999999999864
No 77
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=34.54 E-value=40 Score=20.96 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 55 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 55 yLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
|-.|=|+.|+.| |...|...+...|+.+|+..|+.
T Consensus 35 ~SGADi~~l~~e----A~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 35 ISGADINSICQE----SGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp CCHHHHHHHHHH----HHHGGGTSCCSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHHHHHhccCCcCHHHHHHHHH
Confidence 444445544443 33444445567899999998875
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.38 E-value=22 Score=31.26 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE 97 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E 97 (139)
+.++|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3678899999999999999999999999986653
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.32 E-value=31 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHH
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE 97 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~E 97 (139)
+..+|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4678899999999989999999999999987653
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.00 E-value=29 Score=31.12 Aligned_cols=33 Identities=30% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcH
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE 96 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~ 96 (139)
+.++|+.|...|...+...|+|+||-+++-.++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~ 42 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDE 42 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 467889999999999999999999999997654
No 81
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=32.12 E-value=49 Score=21.08 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 55 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 55 yLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
|-.|=|+.|+.|-.. .|...+...|+.+|+..|+.
T Consensus 35 ~SGADl~~l~~eAa~----~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 35 STGAELRSVCTEAGM----FAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp CCHHHHHHHHHHHHH----HHHHHSCSSBCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH----HHHHhccccCCHHHHHHHHH
Confidence 334445555444333 33334567899999999885
No 82
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.97 E-value=1.8e+02 Score=22.25 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=39.4
Q ss_pred hHHHHHHHHhC----CCccccCCchHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCccchhhHHHhhhC
Q 032523 32 VGRIARFLKAG----KYADRVGAGAPVYLSAVLE------YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
Q Consensus 32 vsri~R~Lk~~----~~~~RVs~~A~vyLaAvLE------yL~~EILelAg~~A~~~~~krItP~hI~~AI~n 94 (139)
...+..+++.. -....++.++.-+++.... ..+.++++.|+..|. +...|+.+|+..++..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 199 AEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 35566666542 1123577777666666555 124577788887776 5678999999988753
No 83
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=30.06 E-value=55 Score=26.88 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=42.8
Q ss_pred chHHHHHHHHhCC--CccccCCchHHHHHHHH-HH---HHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 31 PVGRIARFLKAGK--YADRVGAGAPVYLSAVL-EY---LAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 31 Pvsri~R~Lk~~~--~~~RVs~~A~vyLaAvL-Ey---L~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
+...+..+|+... ....++.++..+++..- +- .+-.+++.|...|...++..|+++|++.++.
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 3466777776431 11246777766666644 21 3456777888888888889999999998875
No 84
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.01 E-value=52 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 67 VLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 67 ILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
+++.|...|...++..|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 344455555666778899999999875
No 85
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=29.78 E-value=62 Score=20.66 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 52 APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 52 A~vyLaAvLEyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
+.-|-.|=|+.|+.|-...|. ......|+.+|+..|+.
T Consensus 42 T~G~SGADL~~l~~eAa~~al----r~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 42 MPGASGAEVKGVCTEAGMYAL----RERRVHVTQEDFEMAVA 79 (86)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH----HHcCCCCCHHHHHHHHH
Confidence 334555566666555444443 34467899999998885
No 86
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=27.61 E-value=16 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 65 AEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 65 ~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
...|.+|...|...+.. |+..||..|-.
T Consensus 50 tktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 50 NHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 55668888888887775 99999999986
No 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=26.74 E-value=62 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHhh
Q 032523 67 VLELAGNAARDNKKNRIVPRHIQLAV 92 (139)
Q Consensus 67 ILelAg~~A~~~~~krItP~hI~~AI 92 (139)
+++.|...|...++..|+.+|++.|+
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 34445555555666789999999876
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.61 E-value=60 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHhh
Q 032523 67 VLELAGNAARDNKKNRIVPRHIQLAV 92 (139)
Q Consensus 67 ILelAg~~A~~~~~krItP~hI~~AI 92 (139)
+++.|...|...++..|+.+|++.|+
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44455555555666789999999876
No 89
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=26.49 E-value=64 Score=23.91 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 65 AEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 65 ~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
..++..|...|...++..|+.+|++.|+.
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 34555566666667788899999999985
No 90
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=25.73 E-value=1.4e+02 Score=25.86 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHhCC---CccccCCchHHHHHHHHHHHH---------------------HHHHHHHHHHHhhcCCCccc
Q 032523 29 QFPVGRIARFLKAGK---YADRVGAGAPVYLSAVLEYLA---------------------AEVLELAGNAARDNKKNRIV 84 (139)
Q Consensus 29 ~fPvsri~R~Lk~~~---~~~RVs~~A~vyLaAvLEyL~---------------------~EILelAg~~A~~~~~krIt 84 (139)
.++...+.+++...+ ...++++.+..||......+= ..++.+|--.|.-.++..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355666666654332 345788888877776544431 12566677778888999999
Q ss_pred hhhHHHhhhCcHHHHhhhcCceecCCcc
Q 032523 85 PRHIQLAVRNDEELSKLLGTVTIANGGV 112 (139)
Q Consensus 85 P~hI~~AI~nD~EL~~L~~~~~Ia~ggv 112 (139)
|+|++.||.-=. ..|.+-.+.+.+|.
T Consensus 473 ~eDV~~Ai~L~~--~Sl~~~a~dp~tg~ 498 (506)
T 3f8t_A 473 PEDVDIAAELVD--WYLETAMQIPGGDE 498 (506)
T ss_dssp HHHHHHHHHHHH--HHHHHTTC------
T ss_pred HHHHHHHHHHHH--HHHHHhcCCCCCCe
Confidence 999999996221 23333334445554
No 91
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=25.24 E-value=92 Score=20.04 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-ccchhhHHHhhhC-----------cHHHHhhhcCceecCCc
Q 032523 60 LEYLAAEVLELAGNAARDNKKN-RIVPRHIQLAVRN-----------DEELSKLLGTVTIANGG 111 (139)
Q Consensus 60 LEyL~~EILelAg~~A~~~~~k-rItP~hI~~AI~n-----------D~EL~~L~~~~~Ia~gg 111 (139)
||.-+.+|.+.=-......+.. .|+...|...+.. +.++..+++.+-.-.-|
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG 69 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQ 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCC
Confidence 4444555555433444334543 8999999887763 56788888644333333
No 92
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=25.14 E-value=1.3e+02 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 66 EVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 66 EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
.++..|...|.-.++..|+++|+..++.
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3566677777778888899999998774
No 93
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=24.66 E-value=1.5e+02 Score=20.52 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhc
Q 032523 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
Q Consensus 64 ~~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 103 (139)
..+.++.....+...+...|+...+...+.+++++..++.
T Consensus 146 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~ 185 (204)
T 1jba_A 146 PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQ 185 (204)
T ss_dssp HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHH
Confidence 3456666667676677789999999999999999999985
No 94
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=23.60 E-value=1.3e+02 Score=20.68 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhc
Q 032523 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
Q Consensus 65 ~EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 103 (139)
.+.++.........+...|+...+...+.+++++..++.
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~ 168 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILT 168 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHh
Confidence 355666666666677789999999999999999999986
No 95
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=23.49 E-value=1.1e+02 Score=22.04 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhc
Q 032523 66 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
Q Consensus 66 EILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 103 (139)
+.++...+.+...+...|+-+.+...+.+++.+...|+
T Consensus 173 ~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~l~~~l~ 210 (224)
T 1s1e_A 173 QHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQ 210 (224)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhc
Confidence 44555556666667778999999999999999888874
No 96
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=22.84 E-value=2e+02 Score=20.11 Aligned_cols=42 Identities=21% Similarity=0.036 Sum_probs=35.2
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCccchh
Q 032523 45 ADRVGAGAPVYLSAVLEYLAAEVLELAGNAARD---NKKNRIVPR 86 (139)
Q Consensus 45 ~~RVs~~A~vyLaAvLEyL~~EILelAg~~A~~---~~~krItP~ 86 (139)
..|...+|...|--+-|.++-.++|-+.-.|.+ .|-+||+..
T Consensus 24 ~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~ 68 (121)
T 2ly8_A 24 DLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL 68 (121)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH
Confidence 359999999999999999999999999777766 466787765
No 97
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=22.54 E-value=2.6e+02 Score=21.25 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCC----ccccCCchHHHHHHHH------------HHHHHHHHHHHHHHHhhcCCCccchhhHHHhhh
Q 032523 33 GRIARFLKAGKY----ADRVGAGAPVYLSAVL------------EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
Q Consensus 33 sri~R~Lk~~~~----~~RVs~~A~vyLaAvL------------EyL~~EILelAg~~A~~~~~krItP~hI~~AI~ 93 (139)
..+..+++..-. ...++.++..+++... =..+.+++..|+..|...+...|+.+|+..++.
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 196 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp HHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 555666644311 1245555555555554 123567777788878777888899999987764
No 98
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=20.36 E-value=1.8e+02 Score=18.71 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=46.5
Q ss_pred CcccchHHHHHHHHhCC--CccccCCchHHHHHHHHHHH-------HHHHHHHHHHHHhhcCCCccchhhHHHhhh----
Q 032523 27 GLQFPVGRIARFLKAGK--YADRVGAGAPVYLSAVLEYL-------AAEVLELAGNAARDNKKNRIVPRHIQLAVR---- 93 (139)
Q Consensus 27 gL~fPvsri~R~Lk~~~--~~~RVs~~A~vyLaAvLEyL-------~~EILelAg~~A~~~~~krItP~hI~~AI~---- 93 (139)
++.++-..+..+++... ....|+ -..|+..+..++ ..+.+..+-+.....+...|+..++..++.
T Consensus 50 ~~~~~~~~~~~~~~~~d~~~~g~i~--~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~ 127 (162)
T 1top_A 50 GQNPTKEELDAIIEEVDEDGSGTID--FEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 127 (162)
T ss_dssp TCCCCHHHHHHHHHHHCTTSCCEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCcEe--HHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 34455555666665431 223443 334444444333 344555566666667777899999998874
Q ss_pred --CcHHHHhhhcCceecCCc
Q 032523 94 --NDEELSKLLGTVTIANGG 111 (139)
Q Consensus 94 --nD~EL~~L~~~~~Ia~gg 111 (139)
.++++..+|.......-|
T Consensus 128 ~~~~~~~~~~~~~~d~~~dg 147 (162)
T 1top_A 128 HVTEEDIEDLMKDSDKNNDG 147 (162)
T ss_dssp CCCHHHHHHHHHHHCTTCSS
T ss_pred CCCHHHHHHHHHHhCCCCCC
Confidence 456777777543333333
No 99
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=20.24 E-value=90 Score=21.20 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHhhhCcHHHHhhhcCceec
Q 032523 67 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIA 108 (139)
Q Consensus 67 ILelAg~~A~~~~~krItP~hI~~AI~nD~EL~~L~~~~~Ia 108 (139)
.++.+.......+...|+...+...+..++++..+| .....
T Consensus 148 ~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~-~~D~~ 188 (193)
T 1bjf_A 148 RTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL-QCDPS 188 (193)
T ss_dssp HHHHHHHHSCTTCSSEECHHHHHHHHHHCTHHHHTT-CC---
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHhcCHHHHHHh-ccCCC
Confidence 344555555667778899999999999999999998 54433
Done!