BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032526
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0H5|TAF10_MOUSE Transcription initiation factor TFIID subunit 10 OS=Mus musculus
GN=Taf10 PE=1 SV=1
Length = 218
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCK 80
L +FL L YTPTIPD + +YL ++GF+ D R+IRL+++A QKF++++A DALQ CK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175
Query: 81 ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 124
+ A + + KD++ LTMEDL+ AL EYG+NVK YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217
>sp|Q12962|TAF10_HUMAN Transcription initiation factor TFIID subunit 10 OS=Homo sapiens
GN=TAF10 PE=1 SV=1
Length = 218
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCK 80
L +FL L YTPTIPD + +YL ++GF+ D R+IRL+++A QKF++++A DALQ CK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175
Query: 81 ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 124
+ A + + KD++ LTMEDL+ AL EYG+NVK YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217
>sp|Q9XZT7|TAFAB_DROME Transcription initiation factor TFIID subunit 10b OS=Drosophila
melanogaster GN=Taf10b PE=1 SV=1
Length = 146
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCK 80
L++F+S L YTP IPD + HYL GFQ D R++RL+++A QK+++++ DALQ K
Sbjct: 41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK 100
Query: 81 AR-QAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 123
AR + KD++ LTMEDL AL +YG+NV+ +Y
Sbjct: 101 ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144
>sp|Q9U5W9|TAF10_DROME Transcription initiation factor TFIID subunit 10 OS=Drosophila
melanogaster GN=Taf10 PE=1 SV=2
Length = 167
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 17 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDAL 76
+++ + E + L Y+PTIPD L H L +GF D +++RLV+V+ QKF++++A DAL
Sbjct: 53 EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112
Query: 77 QQCKARQAAV--------VKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 124
Q CK R + KDK K KD++ L MEDL AL ++G+ ++ +YF
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDK--KNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166
>sp|O60171|TAF10_SCHPO Transcription initiation factor TFIID subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf10 PE=3 SV=1
Length = 215
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQ 77
D L FL+ + Y+P IPD L+++YL+ SGF+C D RL +L+ + QKF+++VA DA Q
Sbjct: 90 DKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQ 149
Query: 78 QCKARQAA------------------VVKDKRDKQQKDKRLILTMEDLSKALREYGVNVK 119
K R + ++ + +LT++DLS AL EYG+N+K
Sbjct: 150 YSKIRTGSSNASSTTFGAQNFGAGGASGIGSSGRRGDRGKTVLTVDDLSAALNEYGINLK 209
Query: 120 HQEYF 124
++F
Sbjct: 210 RPDFF 214
>sp|Q12030|TAF10_YEAST Transcription initiation factor TFIID subunit 10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF10 PE=1
SV=1
Length = 206
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 28/135 (20%)
Query: 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQ 77
D L E L + P IPD ++++YL K+GF DVR+ RL+A+ATQKFV+++A DA +
Sbjct: 71 DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYE 130
Query: 78 QCKARQAAVVKDKRDKQQKDK----------------------------RLILTMEDLSK 109
+ R + V + + Q + + +++LT+ DLS
Sbjct: 131 YSRIRSSVAVSNANNSQARARQLLQGQQQPGVQQISQQQHQQNEKTTASKVVLTVNDLSS 190
Query: 110 ALREYGVNVKHQEYF 124
A+ EYG+N+ +++
Sbjct: 191 AVAEYGLNIGRPDFY 205
>sp|C3K2F6|TRMA_PSEFS tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=trmA PE=3 SV=1
Length = 359
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 36 PDELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQ 94
PD+L+E Y F P R+ +++A K A L + +V+
Sbjct: 204 PDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDENAVGNVTLVR------ 257
Query: 95 QKDKRLILTMEDLSKALRE-------YGVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E +G+++K E+ F D P GMDP + E
Sbjct: 258 -------LSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRAGMDPDTCE 304
>sp|Q9RHS9|TRMA_PSEFL tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas fluorescens
GN=trmA PE=3 SV=1
Length = 363
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ +++A K A L + +V+
Sbjct: 209 DDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDENAVDNVTLVR------- 261
Query: 96 KDKRLILTMEDLSKALRE-------YGVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E +G+++K E+ F D P GMDP + E
Sbjct: 262 ------LSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDTCE 308
>sp|Q3K6G9|TRMA_PSEPF tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=trmA PE=3 SV=1
Length = 359
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ +++A K A L + +V+
Sbjct: 205 DDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLAENAVDNVTLVR------- 257
Query: 96 KDKRLILTMEDLSKALRE-------YGVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E +G+++K E+ F D P GMDP + E
Sbjct: 258 ------LSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDTCE 304
>sp|Q4K5P2|TRMA_PSEF5 tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=trmA PE=3 SV=1
Length = 359
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ +++A K A L + +V+
Sbjct: 205 DDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLSENAVDNVTLVR------- 257
Query: 96 KDKRLILTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E GV++K E+ F D P GMDP + E
Sbjct: 258 ------LSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRAGMDPDTCE 304
>sp|C1DLS8|TRMA_AZOVD tRNA (uracil(54)-C(5))-methyltransferase OS=Azotobacter vinelandii
(strain DJ / ATCC BAA-1303) GN=trmA PE=3 SV=1
Length = 361
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ R++A K A L+ +V+
Sbjct: 207 DDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAALTNLESNGVDNVTLVR------- 259
Query: 96 KDKRLILTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E GV++K ++ F D P GMDP + E
Sbjct: 260 ------LSAEELTQALNEVRPFRRLAGVDLKGYDFGSLFVDPPRAGMDPDTCE 306
>sp|B0KHR5|TRMA_PSEPG tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas putida
(strain GB-1) GN=trmA PE=3 SV=1
Length = 361
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQK 96
D+L+E Y F P +R Q E++ ++ A + + +
Sbjct: 207 DDLLELYCGNGNFTLPLATRVR------QVLATEISKTSVN-------AALSNLDENAVD 253
Query: 97 DKRLI-LTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
+ RL+ L+ E+L++AL E G+++K E+ F D P GMDP + E
Sbjct: 254 NVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYEFGTVFVDPPRAGMDPDTCE 306
>sp|Q6RSS2|L_PIRVV RNA-directed RNA polymerase L OS=Pirital virus (isolate
Rat/Venezuela/VAV-488/1995) GN=L PE=3 SV=1
Length = 2210
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 2 NHNNNFQQSSDGRHDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVA 61
NH + SS +D + L S+ P+I DE + Y++ D+ ++RL
Sbjct: 1706 NHFWPIKPSSQTELEDKVGMNHVLYSIRRNYPSIFDEHISPYMS-------DLNMLRLSW 1758
Query: 62 VATQKFVAE-VATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR-EYGVNVK 119
V KF+ VA D +C + +++ KR++ K+ L+M ++ E G++++
Sbjct: 1759 VQKIKFLDLCVALDMSSECLGIISHIMRRKREELYIVKQQELSMSHTRESTNLESGLSLE 1818
Query: 120 HQE 122
QE
Sbjct: 1819 PQE 1821
>sp|Q4ZNF5|TRMA_PSEU2 tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=trmA PE=3 SV=1
Length = 361
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ +++A K A L +V+
Sbjct: 207 DDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDDNGVDNVTLVR------- 259
Query: 96 KDKRLILTMEDLSKALRE-------YGVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E +GV++K ++ F D P GMDP + E
Sbjct: 260 ------LSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCE 306
>sp|Q48DT0|TRMA_PSE14 tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=trmA PE=3
SV=1
Length = 361
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ +++A K A L +V+
Sbjct: 207 DDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDDNGVDNVTLVR------- 259
Query: 96 KDKRLILTMEDLSKALRE-------YGVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E +GV++K ++ F D P GMDP + E
Sbjct: 260 ------LSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCE 306
>sp|Q1I4J8|TRMA_PSEE4 tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas entomophila
(strain L48) GN=trmA PE=3 SV=1
Length = 361
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQK 96
D+L+E Y F P L A Q E++ ++ A + + +
Sbjct: 207 DDLLELYCGNGNFTLP------LATRARQVLATEISKTSVN-------AALHNLDENGVD 253
Query: 97 DKRLI-LTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
+ RL+ L+ E+L++AL E G+++K ++ F D P GMDP + E
Sbjct: 254 NVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYDFGTVFVDPPRAGMDPDTCE 306
>sp|A3PBD8|LEPA_PROM0 Elongation factor 4 OS=Prochlorococcus marinus (strain MIT 9301)
GN=lepA PE=3 SV=1
Length = 602
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 114 YGVNVKHQEY-FADNPSTGMDPASKE 138
Y VN+ HQE+ F DNPST DP +E
Sbjct: 377 YKVNLNHQEHIFIDNPSTIPDPQLRE 402
>sp|Q88E14|TRMA_PSEPK tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas putida
(strain KT2440) GN=trmA PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQK 96
D+L+E Y F P +R Q E++ ++ A + + +
Sbjct: 207 DDLLELYCGNGNFTLPLATRVR------QVLATEISKTSVN-------AALSNLDENAVD 253
Query: 97 DKRLI-LTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
+ RL+ L+ E+L++AL E G+++K ++ F D P GMDP + E
Sbjct: 254 NVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPRAGMDPDTCE 306
>sp|A5W926|TRMA_PSEP1 tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=trmA PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQK 96
D+L+E Y F P +R Q E++ ++ A + + +
Sbjct: 207 DDLLELYCGNGNFTLPLATRVR------QVLATEISKTSVN-------AALSNLDENAVD 253
Query: 97 DKRLI-LTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
+ RL+ L+ E+L++AL E G+++K ++ F D P GMDP + E
Sbjct: 254 NVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPRAGMDPDTCE 306
>sp|A4XQI3|TRMA_PSEMY tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas mendocina
(strain ymp) GN=trmA PE=3 SV=1
Length = 362
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ R++A K A L +V+
Sbjct: 208 DDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAALANLADNGVNNVELVR------- 260
Query: 96 KDKRLILTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E G+++K ++ F D P GMDP + E
Sbjct: 261 ------LSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDTCE 307
>sp|B1J3Q4|TRMA_PSEPW tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas putida
(strain W619) GN=trmA PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQK 96
D+L+E Y F P +R Q E++ ++ A + + +
Sbjct: 207 DDLLELYCGNGNFTLPLATRVR------QVLATEISKTSVN-------AALSNLSENAVD 253
Query: 97 DKRLI-LTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
+ RL+ L+ E+L++AL E G+++K + F D P GMDP + E
Sbjct: 254 NVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYAFGTVFVDPPRAGMDPDTCE 306
>sp|Q87WA0|TRMA_PSESM tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=trmA PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 24/113 (21%)
Query: 37 DELVEHYLAKSGFQCP-DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQ 95
D+L+E Y F P R+ +++A K A L +V+
Sbjct: 207 DDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDDNGVDNVTLVR------- 259
Query: 96 KDKRLILTMEDLSKALREY-------GVNVKHQEY---FADNPSTGMDPASKE 138
L+ E+L++AL E G+++K ++ F D P GMDP + E
Sbjct: 260 ------LSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPDTCE 306
>sp|Q8DWV5|SYD_STRA5 Aspartate--tRNA ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=aspS PE=3 SV=1
Length = 583
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 48 GFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDL 107
G PD R L+ T+ V EV + +A VVKDK DK + ++ L
Sbjct: 284 GSDKPDTRFDMLLQDLTE-IVKEVDFKVFSEASVVKAIVVKDKADKYSRK-----NIDKL 337
Query: 108 SKALREYGVNVKHQEYFADNPSTGMDPASK 137
++ ++YG +ADN +G P +K
Sbjct: 338 TEIAKQYGAKGLAWLKYADNTISG--PVAK 365
>sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis GN=mtbp PE=2 SV=2
Length = 867
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 37 DELVEHYLAKSGFQCPDVRLIRL---------VAVATQKFVAEVATDALQQCKARQAAVV 87
D LV SG Q P R RL AV ++A Q K +
Sbjct: 725 DSLVSLASEGSGHQ-PPTRATRLRPERAASSTSAVQPPSARVQMAPSVPAQSKQSTHPDL 783
Query: 88 KDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYFADN 127
+ K + QK R++ E +SK L++YG+ V+H Y A N
Sbjct: 784 EQKESRSQKHNRML--KEVVSKTLQKYGIGVEHPCYAACN 821
>sp|Q5R0A6|UVRC_IDILO UvrABC system protein C OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=uvrC PE=3 SV=1
Length = 612
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 24/118 (20%)
Query: 31 YTPTIPDE----------LVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCK 80
Y P +P + L++ YL+ + + ++ V V +AEV +DAL Q
Sbjct: 286 YFPKVPTDTPDDEVLRAFLLQFYLSDTAGRKIPREVVLPVDVQPDNVLAEVMSDALSQPV 345
Query: 81 ARQAAVVKDKRDKQ---QKDKRLIL--------TMEDLSKALR---EYGVNVKHQEYF 124
Q++V DKR Q QK+ L TM ++AL+ E+GV ++ E F
Sbjct: 346 KLQSSVRGDKRQYQSLAQKNAVNALESRLNQQSTMNRRTQALQQVLEFGVPIQRMECF 403
>sp|Q9FMP5|CDPKH_ARATH Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana
GN=CPK17 PE=2 SV=1
Length = 528
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 96 KDKRLILTMEDLSKALREYGVN 117
KD +TME+L +ALRE+G+N
Sbjct: 460 KDNSGYITMEELEQALREFGMN 481
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,808,115
Number of Sequences: 539616
Number of extensions: 1662182
Number of successful extensions: 6648
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 6628
Number of HSP's gapped (non-prelim): 49
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)