Query 032526
Match_columns 139
No_of_seqs 105 out of 143
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ku5_A HPHA, archaeal histon; 97.6 0.00031 1.1E-08 46.5 8.0 67 31-112 3-69 (70)
2 2yfw_B Histone H4, H4; cell cy 97.5 0.00052 1.8E-08 49.1 8.0 72 29-115 24-95 (103)
3 1id3_B Histone H4; nucleosome 97.4 0.00053 1.8E-08 49.2 7.7 73 28-115 22-94 (102)
4 1tzy_D Histone H4-VI; histone- 97.4 0.00085 2.9E-08 47.9 7.9 73 28-115 23-95 (103)
5 2hue_C Histone H4; mini beta s 97.3 0.00079 2.7E-08 46.4 7.0 73 28-115 4-76 (84)
6 3b0c_T CENP-T, centromere prot 97.0 0.0023 7.9E-08 46.5 7.1 70 33-117 6-75 (111)
7 1taf_B TFIID TBP associated fa 97.0 0.0046 1.6E-07 42.0 8.1 67 31-112 3-69 (70)
8 1n1j_A NF-YB; histone-like PAI 96.9 0.0096 3.3E-07 41.2 9.2 71 32-117 6-78 (93)
9 1h3o_B Transcription initiatio 96.7 0.015 5.2E-07 40.1 9.1 68 18-118 8-76 (76)
10 1b67_A Protein (histone HMFA); 96.6 0.0096 3.3E-07 38.8 7.2 65 34-113 2-66 (68)
11 1taf_A TFIID TBP associated fa 96.5 0.017 5.8E-07 39.0 7.9 61 38-113 5-65 (68)
12 1f1e_A Histone fold protein; a 96.0 0.041 1.4E-06 42.3 8.9 70 33-117 3-73 (154)
13 2byk_B Chrac-14; nucleosome sl 95.9 0.017 6E-07 42.7 6.0 69 33-116 8-78 (128)
14 1n1j_B NF-YC; histone-like PAI 95.5 0.065 2.2E-06 37.5 7.6 68 32-114 17-85 (97)
15 4g92_C HAPE; transcription fac 95.3 0.095 3.3E-06 38.1 8.1 81 18-113 16-106 (119)
16 3b0c_W CENP-W, centromere prot 95.0 0.086 2.9E-06 35.3 6.7 66 33-114 3-70 (76)
17 1jfi_B DR1 protein, transcript 94.2 0.22 7.5E-06 39.1 8.2 68 34-117 15-84 (179)
18 1f1e_A Histone fold protein; a 93.2 0.46 1.6E-05 36.3 8.2 66 33-113 81-146 (154)
19 2byk_A Chrac-16; nucleosome sl 92.6 0.2 6.8E-06 37.7 5.3 68 32-113 17-85 (140)
20 1jfi_A Transcription regulator 91.4 0.46 1.6E-05 33.3 5.8 69 30-113 7-76 (98)
21 2ly8_A Budding yeast chaperone 90.5 0.83 2.9E-05 33.8 6.7 59 45-118 58-116 (121)
22 3b0b_C CENP-X, centromere prot 89.6 1.1 3.7E-05 30.9 6.3 72 29-112 3-74 (81)
23 1h3o_A Transcription initiatio 83.5 1.3 4.3E-05 30.5 3.8 43 41-83 13-55 (75)
24 4dra_E Centromere protein X; D 82.1 5.2 0.00018 27.8 6.6 70 31-112 9-78 (84)
25 3v9r_B MHF2, uncharacterized p 77.1 2.2 7.6E-05 30.2 3.4 72 34-110 1-72 (88)
26 3b0b_B CENP-S, centromere prot 76.0 5.1 0.00017 28.9 5.2 45 53-112 41-85 (107)
27 3kw6_A 26S protease regulatory 72.9 6.1 0.00021 25.2 4.6 59 38-113 10-72 (78)
28 2dae_A KIAA0733 protein; mitog 72.1 1.8 6.2E-05 29.9 1.9 24 27-50 16-39 (75)
29 2l5a_A Histone H3-like centrom 69.8 11 0.00036 30.9 6.2 72 18-115 156-227 (235)
30 3v9r_A MHF1, uncharacterized p 63.0 21 0.00072 24.8 5.9 53 44-112 26-78 (90)
31 4dra_A Centromere protein S; D 62.6 7.1 0.00024 28.6 3.5 50 47-112 44-93 (113)
32 3vh5_A CENP-S; histone fold, c 51.7 33 0.0011 25.9 5.7 53 44-112 33-85 (140)
33 2ahq_A Sigma-54, RNA polymeras 47.9 6 0.00021 26.8 1.0 25 96-120 32-56 (76)
34 3uk6_A RUVB-like 2; hexameric 47.4 81 0.0028 24.4 7.6 59 40-113 268-329 (368)
35 3vlf_B 26S protease regulatory 43.6 50 0.0017 21.6 5.1 63 39-118 9-75 (88)
36 4b4t_K 26S protease regulatory 42.3 65 0.0022 27.5 6.8 27 98-124 398-427 (428)
37 2p5k_A Arginine repressor; DNA 40.8 5 0.00017 24.1 -0.3 26 101-126 19-44 (64)
38 3r45_A Histone H3-like centrom 38.7 55 0.0019 25.1 5.2 70 32-116 75-151 (156)
39 4art_A Structural protein ORF2 38.6 14 0.00047 29.9 1.9 31 19-50 97-127 (279)
40 3byi_A RHO GTPase activating p 37.4 40 0.0014 25.3 4.3 43 18-62 93-135 (214)
41 2krk_A 26S protease regulatory 36.0 58 0.002 21.4 4.5 16 99-114 66-81 (86)
42 3c6f_A YETF protein; uncharact 35.5 14 0.00048 27.6 1.4 20 98-117 31-50 (153)
43 2qz4_A Paraplegin; AAA+, SPG7, 35.4 19 0.00066 26.4 2.1 17 98-114 233-249 (262)
44 1b4a_A Arginine repressor; hel 33.6 22 0.00074 26.5 2.2 21 100-120 18-38 (149)
45 1f7c_A Rhogap protein; GTPase 33.4 39 0.0013 25.8 3.7 44 18-63 98-141 (231)
46 3nqu_A Histone H3-like centrom 33.2 99 0.0034 23.2 5.8 69 33-116 60-135 (140)
47 2ejs_A Autocrine motility fact 32.8 47 0.0016 21.5 3.4 43 16-60 8-50 (58)
48 1h1j_S THO1 protein; SAP domai 32.7 27 0.00092 21.9 2.2 18 101-118 7-24 (51)
49 2dzn_B 26S protease regulatory 32.3 57 0.0019 20.8 3.9 15 100-114 54-68 (82)
50 2hue_B Histone H3; mini beta s 32.2 96 0.0033 20.9 5.1 42 60-116 34-75 (77)
51 2ekf_A Ancient ubiquitous prot 30.9 50 0.0017 21.6 3.4 44 15-60 7-50 (61)
52 3msx_B RHO GTPase-activating p 29.9 35 0.0012 25.2 2.8 43 18-62 81-123 (201)
53 3a1y_A 50S ribosomal protein P 29.3 53 0.0018 20.8 3.2 40 35-74 17-56 (58)
54 2g49_C Glucagon preproprotein; 29.0 34 0.0012 19.4 2.0 15 59-73 14-28 (29)
55 3fk2_A Glucocorticoid receptor 29.0 78 0.0027 24.4 4.8 43 18-62 125-167 (246)
56 1o6b_A Phosphopantetheine aden 28.7 47 0.0016 23.6 3.3 37 15-51 126-162 (169)
57 2do1_A Nuclear protein HCC-1; 28.6 33 0.0011 21.8 2.1 19 100-118 11-29 (55)
58 3lvy_A Carboxymuconolactone de 28.1 1.4E+02 0.0048 22.4 6.0 59 15-76 134-192 (207)
59 2rrh_A VIP peptides; peptide h 28.0 48 0.0016 18.6 2.5 14 60-73 15-28 (29)
60 3nqj_A Histone H3-like centrom 27.9 1E+02 0.0035 21.0 4.7 44 58-116 34-77 (82)
61 3kuq_A RHO GTPase-activating p 27.9 35 0.0012 26.1 2.5 44 18-63 92-135 (228)
62 3rdw_A Putative arsenate reduc 27.7 32 0.0011 24.0 2.1 25 101-125 79-103 (121)
63 1zrj_A E1B-55KDA-associated pr 27.5 36 0.0012 21.2 2.1 20 99-118 10-29 (50)
64 3f0i_A Arsenate reductase; str 26.8 33 0.0011 23.9 2.1 25 101-125 78-102 (119)
65 2qp9_X Vacuolar protein sortin 26.0 2.5E+02 0.0085 22.3 7.4 41 39-80 225-269 (355)
66 3l78_A Regulatory protein SPX; 25.8 36 0.0012 23.5 2.1 26 101-126 73-98 (120)
67 1t5q_A Gastric inhibitory poly 25.6 56 0.0019 18.6 2.5 15 59-73 14-28 (30)
68 3fz4_A Putative arsenate reduc 25.5 36 0.0012 23.7 2.1 27 101-127 78-104 (120)
69 1rw1_A Conserved hypothetical 25.3 37 0.0013 23.1 2.1 27 100-126 71-97 (114)
70 2osa_A N-chimaerin; RHO-GAP, G 25.2 35 0.0012 25.4 2.1 43 18-62 83-125 (202)
71 3d8b_A Fidgetin-like protein 1 24.5 2E+02 0.0068 22.8 6.6 18 99-116 319-336 (357)
72 2ee4_A RHO GTPase activating p 24.3 46 0.0016 24.8 2.6 42 19-62 85-126 (209)
73 2ko1_A CTR148A, GTP pyrophosph 24.0 28 0.00096 21.6 1.1 17 104-120 19-35 (88)
74 2kok_A Arsenate reductase; bru 23.3 43 0.0015 22.9 2.1 26 100-125 76-101 (120)
75 3aji_B S6C, proteasome (prosom 23.1 76 0.0026 20.0 3.2 17 99-115 56-72 (83)
76 2lbf_B 60S acidic ribosomal pr 22.8 74 0.0025 21.0 3.1 49 24-73 9-57 (70)
77 2kvu_A MKL/myocardin-like prot 22.7 47 0.0016 22.6 2.1 20 99-118 26-45 (75)
78 2l63_A GLP-2, glucagon-like pe 22.6 51 0.0018 19.2 2.0 15 59-73 14-28 (33)
79 1zpv_A ACT domain protein; str 22.2 44 0.0015 21.0 1.8 20 104-123 19-38 (91)
80 2k6x_A Sigma-A, RNA polymerase 22.1 97 0.0033 19.8 3.5 17 103-119 44-60 (72)
81 1s3c_A Arsenate reductase; ARS 21.9 46 0.0016 23.9 2.1 26 101-126 75-100 (141)
82 4b4t_J 26S protease regulatory 21.4 1.5E+02 0.0051 25.3 5.4 16 98-113 373-388 (405)
83 3evi_A Phosducin-like protein 21.3 43 0.0015 23.0 1.7 16 101-116 99-114 (118)
84 3gkx_A Putative ARSC family re 21.2 35 0.0012 23.8 1.3 27 100-126 78-104 (120)
85 2dhy_A CUE domain-containing p 21.0 90 0.0031 20.4 3.2 48 16-64 13-60 (67)
86 1tzy_C Histone H3; histone-fol 20.8 2.4E+02 0.0082 20.8 5.9 71 32-117 60-135 (136)
87 2qtr_A Nicotinate (nicotinamid 20.7 1.1E+02 0.0036 21.9 3.9 32 15-46 153-184 (189)
88 1vlh_A Phosphopantetheine aden 20.6 1.2E+02 0.0039 22.1 4.1 32 16-47 137-168 (173)
89 3c5t_B Exendin-4, exenatide; l 20.4 61 0.0021 18.7 2.0 15 59-73 6-20 (31)
90 2d2p_A Pituitary adenylate cyc 20.2 77 0.0026 19.0 2.5 15 59-73 14-28 (39)
91 3ouv_A Serine/threonine protei 20.2 47 0.0016 20.6 1.6 27 101-127 15-41 (71)
92 1qjc_A Phosphopantetheine aden 20.1 66 0.0023 22.3 2.6 32 15-46 125-156 (158)
No 1
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.63 E-value=0.00031 Score=46.54 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 31 YTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
|-|.||-..+.-++++.|..-=.+.++-.+.=++..|+.+|+.||..||+ ..+|-+++.+|+..|
T Consensus 3 ~~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~---------------hakRkTI~~~DV~lA 67 (70)
T 1ku5_A 3 MMGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFAR---------------HAGRKTVKVEDIKLA 67 (70)
T ss_dssp --CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTTCSEECHHHHHHH
T ss_pred ccccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCcCCHHHHHHH
Confidence 57899999999999999987777889999999999999999999999984 223558999999998
Q ss_pred HH
Q 032526 111 LR 112 (139)
Q Consensus 111 L~ 112 (139)
++
T Consensus 68 ~~ 69 (70)
T 1ku5_A 68 IK 69 (70)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 2
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.48 E-value=0.00052 Score=49.06 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=56.8
Q ss_pred ccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHH
Q 032526 29 MGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLS 108 (139)
Q Consensus 29 ddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~ 108 (139)
.+-..-||-+-+.-++.+.|+..--..+..-++-+...|+.+|+.||..||+- .+|.++|.+|+.
T Consensus 24 r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h---------------akRktvt~~DV~ 88 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEH---------------AKRKTVTSLDVV 88 (103)
T ss_dssp ------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHH
T ss_pred hhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCcCcHHHHH
Confidence 34444499999999999999975344578888889999999999999999852 235589999999
Q ss_pred HHHHHhC
Q 032526 109 KALREYG 115 (139)
Q Consensus 109 ~AL~EyG 115 (139)
.||+..|
T Consensus 89 ~Alr~~g 95 (103)
T 2yfw_B 89 YALKRQG 95 (103)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9999886
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.45 E-value=0.00053 Score=49.22 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=60.6
Q ss_pred cccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHH
Q 032526 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDL 107 (139)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL 107 (139)
|.|...-||-+-+.-+++++|..-=-..++.-+.-+...|+.+|+.||..||+- .+|-|+|.+|+
T Consensus 22 ~r~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~H---------------akRKTVt~~DV 86 (102)
T 1id3_B 22 LRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEH---------------AKRKTVTSLDV 86 (102)
T ss_dssp --CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHH
T ss_pred HHhccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCcCcHHHH
Confidence 456666699999999999999975445588889999999999999999999852 23458999999
Q ss_pred HHHHHHhC
Q 032526 108 SKALREYG 115 (139)
Q Consensus 108 ~~AL~EyG 115 (139)
..||+..|
T Consensus 87 ~~ALkr~g 94 (102)
T 1id3_B 87 VYALKRQG 94 (102)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999886
No 4
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.37 E-value=0.00085 Score=47.86 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=59.4
Q ss_pred cccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHH
Q 032526 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDL 107 (139)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL 107 (139)
+.+-..-||-+-+.-++.+.|+..--..+..-++-....|+.+|+.||..||+- .+|.++|.+|+
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h---------------akRktIt~~DV 87 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH---------------AKRKTVTAMDV 87 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHH
T ss_pred hhhhcccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCcCCHHHH
Confidence 334444599999999999999975334577888888999999999999999852 23558999999
Q ss_pred HHHHHHhC
Q 032526 108 SKALREYG 115 (139)
Q Consensus 108 ~~AL~EyG 115 (139)
..||+..|
T Consensus 88 ~~Alr~~g 95 (103)
T 1tzy_D 88 VYALKRQG 95 (103)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999886
No 5
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.32 E-value=0.00079 Score=46.42 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=60.9
Q ss_pred cccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHH
Q 032526 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDL 107 (139)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL 107 (139)
|.|...-||-+-+.-+++++|..-=-..++.-+.=....|+.+|+.||..||+- .+|-++|.+|+
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~h---------------a~RKTvt~~DV 68 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH---------------AKRKTVTAMDV 68 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHH
T ss_pred ccccCCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCcCcHHHH
Confidence 456667799999999999999974344488888899999999999999999852 23458999999
Q ss_pred HHHHHHhC
Q 032526 108 SKALREYG 115 (139)
Q Consensus 108 ~~AL~EyG 115 (139)
..||+..|
T Consensus 69 ~~Alk~~g 76 (84)
T 2hue_C 69 VYALKRQG 76 (84)
T ss_dssp HHHTTTTC
T ss_pred HHHHHHcC
Confidence 99999876
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.00 E-value=0.0023 Score=46.48 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHH
Q 032526 33 PTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 112 (139)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~ 112 (139)
|-||-+++.-++.+.|..---..++..+.-++..|+.+|+.||..||+- .+|-|+|.||+..||+
T Consensus 6 ~~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~H---------------A~RKTV~~eDV~lalr 70 (111)
T 3b0c_T 6 PEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQH---------------AGRKTVEMADVELLMR 70 (111)
T ss_dssp ----CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCcCCHHHHHHHHH
Confidence 6799999999999999877777789999999999999999999999952 1234899999999999
Q ss_pred HhCcc
Q 032526 113 EYGVN 117 (139)
Q Consensus 113 EyGIn 117 (139)
..|-.
T Consensus 71 r~g~~ 75 (111)
T 3b0c_T 71 RQGLV 75 (111)
T ss_dssp HTTSS
T ss_pred HCCCc
Confidence 98754
No 7
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.99 E-value=0.0046 Score=42.05 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 31 YTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
|...+|-+=+.-+.+..|++.-..-+.+.++--..--+.+|+++|..+.|. -+|.+||.+|+..|
T Consensus 3 ~~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrH---------------akRk~Lt~~DI~~A 67 (70)
T 1taf_B 3 YGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNH---------------AKRQKLSVRDIDMS 67 (70)
T ss_dssp CSCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSSBCHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCeecHHHHHHH
Confidence 567899999999999999998888899999999999999999999999742 12459999999999
Q ss_pred HH
Q 032526 111 LR 112 (139)
Q Consensus 111 L~ 112 (139)
|+
T Consensus 68 lk 69 (70)
T 1taf_B 68 LK 69 (70)
T ss_dssp HC
T ss_pred Hc
Confidence 84
No 8
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.87 E-value=0.0096 Score=41.23 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHH
Q 032526 32 TPTIPDELVEHYLAKSGFQC--PDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSK 109 (139)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~~--~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~ 109 (139)
-..||-+-+.-+++.+|=+. --.--.-+++-|+.-||..|+.+|..+|+ .++|-|++-+|+..
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~---------------~~kRkTI~~~Dv~~ 70 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH---------------QEKRKTINGEDILF 70 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSSBCHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCHHHHHH
Confidence 35799999999999997432 12234568999999999999999999984 23455899999999
Q ss_pred HHHHhCcc
Q 032526 110 ALREYGVN 117 (139)
Q Consensus 110 AL~EyGIn 117 (139)
||++.|..
T Consensus 71 Al~~l~F~ 78 (93)
T 1n1j_A 71 AMSTLGFD 78 (93)
T ss_dssp HHHHTTCG
T ss_pred HHHHcCcH
Confidence 99988864
No 9
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.72 E-value=0.015 Score=40.11 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=56.3
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKD 97 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd 97 (139)
-..|.+|+.+++- =.+-|+-+..++.=.|.-||.+|+..|++.||-|.+
T Consensus 8 k~~L~~Lv~~idp------------------~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s------------- 56 (76)
T 1h3o_B 8 KKKLQDLVREVDP------------------NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKS------------- 56 (76)
T ss_dssp HHHHHHHHHHHCS------------------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHhcCC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------
Confidence 5678888888852 245589999999999999999999999999998743
Q ss_pred cceeeeHHHHHHHHH-HhCccc
Q 032526 98 KRLILTMEDLSKALR-EYGVNV 118 (139)
Q Consensus 98 ~k~vLTmEDL~~AL~-EyGInv 118 (139)
-+|..-|+.-.|+ +|||.|
T Consensus 57 --~~le~kDvql~Ler~wni~i 76 (76)
T 1h3o_B 57 --STLEVKDVQLHLERQWNMWI 76 (76)
T ss_dssp --CEECHHHHHHHHHHHTCCCC
T ss_pred --CCccHHHHHHHHHhhcCCcC
Confidence 3788899999987 888865
No 10
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.61 E-value=0.0096 Score=38.81 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHH
Q 032526 34 TIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 113 (139)
Q Consensus 34 ~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~E 113 (139)
.||-+.+.-.+++.|-..=-....-+++=|+.-||..|+.||..+|. ..+|.|++-+|+..|+++
T Consensus 2 ~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~---------------~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAK---------------HAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCHHHHHHHHHh
Confidence 47888899999988321112333567888999999999999999984 234669999999999875
No 11
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.48 E-value=0.017 Score=38.95 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHH
Q 032526 38 ELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 113 (139)
Q Consensus 38 ~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~E 113 (139)
.++.-+|+.+|.+--.++++-.+.=.+.+++++|+.||..|++-. +|-+++.||+.-|.+.
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HA---------------grktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHA---------------RKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999632 1248999999998864
No 12
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.03 E-value=0.041 Score=42.26 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHH
Q 032526 33 PTIPDELVEHYLAKS-GFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKAL 111 (139)
Q Consensus 33 P~IPD~Vt~yyL~~a-Gf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL 111 (139)
+-+|-+.+.-+++++ |-.---.-.+-.++=+.+.|+..|+.+|-.+|+ +.+|-|++-||+..||
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~---------------ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLD---------------ASGKKTLMEEHLKALA 67 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTTCSEECHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCcCCHHHHHHHH
Confidence 568999999999999 864333445677888999999999999999983 4456699999999999
Q ss_pred HHhCcc
Q 032526 112 REYGVN 117 (139)
Q Consensus 112 ~EyGIn 117 (139)
...|..
T Consensus 68 ~~lg~~ 73 (154)
T 1f1e_A 68 DVLMVE 73 (154)
T ss_dssp HHHTCT
T ss_pred Hhcccc
Confidence 988764
No 13
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=95.86 E-value=0.017 Score=42.74 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 33 PTIPDELVEHYLAKSGFQ--CPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~--~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
..+|-+.+.-+++.++=+ .--.--.-+|+-|+.-||..|+..|+++|+ +++|-|++-+||..|
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~---------------~~kRKTI~~~Dv~~A 72 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAH---------------KQNHKTITAKDILQT 72 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSSCCHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCHHHHHHH
Confidence 357888899999976521 112334568999999999999999999984 233559999999999
Q ss_pred HHHhCc
Q 032526 111 LREYGV 116 (139)
Q Consensus 111 L~EyGI 116 (139)
|.+.|.
T Consensus 73 l~~l~f 78 (128)
T 2byk_B 73 LTELDF 78 (128)
T ss_dssp HHHTTC
T ss_pred HHHcCc
Confidence 999884
No 14
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.53 E-value=0.065 Score=37.51 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 32 TPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~-~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
.+.+|=+-+..+|+..+-- ---.-..-+++-|++-||.+++..|+.+|+- .+|-+++-+||..|
T Consensus 17 ~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~---------------~krktI~~~di~~A 81 (97)
T 1n1j_B 17 VQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTED---------------NKRRTLQRNDIAMA 81 (97)
T ss_dssp ---CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHH
T ss_pred CCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCccCCHHHHHHH
Confidence 5679999999999998642 1223456689999999999999999998741 23459999999999
Q ss_pred HHHh
Q 032526 111 LREY 114 (139)
Q Consensus 111 L~Ey 114 (139)
+...
T Consensus 82 v~~~ 85 (97)
T 1n1j_B 82 ITKF 85 (97)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8753
No 15
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=95.32 E-value=0.095 Score=38.10 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=58.5
Q ss_pred chHHHHHHHhc--------ccC-CCCCCHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032526 18 DAALTEFLSSL--------MGY-TPTIPDELVEHYLAKSGFQC-PDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVV 87 (139)
Q Consensus 18 d~~L~efL~~L--------ddY-~P~IPD~Vt~yyL~~aGf~~-~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~ 87 (139)
...|.+|+..- .|+ .+-+|=+-+..+|+...--. --.--.=+++-|++-||..|+..|..+|+-
T Consensus 16 ~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~------ 89 (119)
T 4g92_C 16 RDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAED------ 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 46788887543 134 56699999999997431100 012235689999999999999999998842
Q ss_pred hhhhhccccccceeeeHHHHHHHHHH
Q 032526 88 KDKRDKQQKDKRLILTMEDLSKALRE 113 (139)
Q Consensus 88 ~~k~~~~~kd~k~vLTmEDL~~AL~E 113 (139)
.+|-+++-+||..|+..
T Consensus 90 ---------~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 90 ---------NKRRTLQRSDIAAALSK 106 (119)
T ss_dssp ---------TTCSEECHHHHHHHHTT
T ss_pred ---------cccCccCHHHHHHHHhc
Confidence 22448999999999974
No 16
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=95.05 E-value=0.086 Score=35.30 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHhC-C-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 33 PTIPDELVEHYLAKS-G-FQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 33 P~IPD~Vt~yyL~~a-G-f~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
+.+|=+.+.-+|.++ + ...+ ..-.-+|+.++.-||..|+..|.+.|+ +++|-|++-||+..|
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is-~~A~~~i~~~~~~Fi~~la~eA~~~a~---------------~~~rKTI~~~dI~~A 66 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLA-ANTDLLVHLSFLLFLHRLAEEARTNAF---------------ENKSKIIKPEHTIAA 66 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEEC-TTHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHTCSSBCHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccC-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCCCCHHHHHHH
Confidence 568999999999954 4 1112 234678999999999999999999984 223459999999999
Q ss_pred HHHh
Q 032526 111 LREY 114 (139)
Q Consensus 111 L~Ey 114 (139)
|++.
T Consensus 67 ~~~l 70 (76)
T 3b0c_W 67 AKVI 70 (76)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9863
No 17
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=94.21 E-value=0.22 Score=39.13 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHH
Q 032526 34 TIPDELVEHYLAKSGF--QCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKAL 111 (139)
Q Consensus 34 ~IPD~Vt~yyL~~aGf--~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL 111 (139)
.+|-+.+.-+++.+|= ..+. --+-+|.-++.-||+-|+..|...|+ +++|-|++-+|+..||
T Consensus 15 ~LP~A~V~RImK~alp~~rISk-DA~~al~ec~~eFI~~LtseA~e~a~---------------~~~RKTI~~eDVl~Al 78 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVAN-DARELVVNCCTEFIHLISSEANEICN---------------KSEKKTISPEHVIQAL 78 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSSBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCCccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCcCCHHHHHHHH
Confidence 6999999999999972 2222 33567888999999999999999984 2334599999999999
Q ss_pred HHhCcc
Q 032526 112 REYGVN 117 (139)
Q Consensus 112 ~EyGIn 117 (139)
.+-|..
T Consensus 79 ~~LgF~ 84 (179)
T 1jfi_B 79 ESLGFG 84 (179)
T ss_dssp HHHTTG
T ss_pred HhcChH
Confidence 998874
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.20 E-value=0.46 Score=36.34 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHH
Q 032526 33 PTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 112 (139)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~ 112 (139)
..||-+.+.-+|.++|-.---.-.+-.+.=+.+.|++.|+.+|-.+|+ +.+|-|+|-||+..||+
T Consensus 81 l~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~---------------ha~RKTIt~eDV~~Al~ 145 (154)
T 1f1e_A 81 ELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYAD---------------EDGRKTVQGEDVEKAIT 145 (154)
T ss_dssp CCCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSEECHHHHHHHHH
T ss_pred ccCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCHHHHHHHHH
Confidence 378999999999999765433344556777788999999999999984 23455899999999997
Q ss_pred H
Q 032526 113 E 113 (139)
Q Consensus 113 E 113 (139)
.
T Consensus 146 ~ 146 (154)
T 1f1e_A 146 Y 146 (154)
T ss_dssp H
T ss_pred h
Confidence 5
No 19
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=92.56 E-value=0.2 Score=37.68 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 32 TPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~-~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
...+|=+-|..+|+...-- .--.-..-+|+-|+.-||..++..|+.+|+ + +.+|-+|+-.||..|
T Consensus 17 ~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~-~-------------~~kRKtI~~~Dl~~A 82 (140)
T 2byk_A 17 ETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEF-G-------------QRPGEALKYEHLSQV 82 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-------------TCCSCEECHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------------hcCCcccCHHHHHHH
Confidence 4567777777777754110 012344678999999999999999999983 1 234559999999999
Q ss_pred HHH
Q 032526 111 LRE 113 (139)
Q Consensus 111 L~E 113 (139)
+..
T Consensus 83 V~~ 85 (140)
T 2byk_A 83 VNK 85 (140)
T ss_dssp HHT
T ss_pred Hhc
Confidence 984
No 20
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=91.39 E-value=0.46 Score=33.27 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=48.2
Q ss_pred cCCCCCCHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHH
Q 032526 30 GYTPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLS 108 (139)
Q Consensus 30 dY~P~IPD~Vt~yyL~~aGf~-~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~ 108 (139)
.+...+|-+-+..+|+..+-- ---.-..-+++-|++-|+.+|+..|+.+++- .+|-+|+-+||.
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~---------------~krktI~~~di~ 71 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQS---------------RNAKTMTTSHLK 71 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHT---------------C---CBCHHHHH
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCeecHHHHH
Confidence 356788999999999976542 1122334589999999999999999998741 224588889998
Q ss_pred HHHHH
Q 032526 109 KALRE 113 (139)
Q Consensus 109 ~AL~E 113 (139)
.|+..
T Consensus 72 ~av~~ 76 (98)
T 1jfi_A 72 QCIEL 76 (98)
T ss_dssp TTCC-
T ss_pred HHHhc
Confidence 88764
No 21
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.83 Score=33.83 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=46.2
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHHhCccc
Q 032526 45 AKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNV 118 (139)
Q Consensus 45 ~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~EyGInv 118 (139)
.++|..---.-+.--+.-+-..|+.+|+.||..|++- -+|-|.|.+|+.-||+..|..+
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaeh---------------A~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEH---------------AKRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCCCBCHHHHHHHHHHTTCGG
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCcCcHHHHHHHHHhCCCcC
Confidence 4678775333477777888899999999999999863 1133899999999999999743
No 22
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.62 E-value=1.1 Score=30.95 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=42.9
Q ss_pred ccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHH
Q 032526 29 MGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLS 108 (139)
Q Consensus 29 ddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~ 108 (139)
++..|+||..++.-+|+. .|+-...||..=---+..+++-=.+..|..-+ ....+ -+...+|+.|||.
T Consensus 3 ~~~~~~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA----~~~a~-------~e~~~~le~~~LE 70 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARA----ARQAQ-------AEDLEKVDIEHVE 70 (81)
T ss_dssp ----CCCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HTTCSEECHHHHH
T ss_pred CccCCCCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------hCCCCeecHHHHH
Confidence 567999999999999999 99977666644333334455444444444422 11111 1223489999999
Q ss_pred HHHH
Q 032526 109 KALR 112 (139)
Q Consensus 109 ~AL~ 112 (139)
..+.
T Consensus 71 ki~p 74 (81)
T 3b0b_C 71 KVLP 74 (81)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 23
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=83.53 E-value=1.3 Score=30.49 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032526 41 EHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQ 83 (139)
Q Consensus 41 ~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~ 83 (139)
..+..+.|+....+-|.++||+|+|-=+-.+...--..++.|.
T Consensus 13 ~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~ 55 (75)
T 1h3o_A 13 LEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKN 55 (75)
T ss_dssp HHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999988888876655555554
No 24
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=82.08 E-value=5.2 Score=27.79 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 31 YTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
-.|+||.+++.-+|. ..|+-...||..=---+..+++-=.+.+|..-+-.. .. .. ...+|+.|||...
T Consensus 9 ~~~~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~----a~------~e-~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQ----AQ------AE-DALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHH----HH------HT-TCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH----HH------hc-CCCcccHHHHHHH
Confidence 479999999999999 999877666644444444444444444444422111 00 01 1236999999987
Q ss_pred HH
Q 032526 111 LR 112 (139)
Q Consensus 111 L~ 112 (139)
|-
T Consensus 77 ~p 78 (84)
T 4dra_E 77 LP 78 (84)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 25
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=77.14 E-value=2.2 Score=30.24 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHH
Q 032526 34 TIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKA 110 (139)
Q Consensus 34 ~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~A 110 (139)
.||-+.+.-+|. -.|.-.+-||.+=---+.+|++---+.+|.--|.-+..+... ....+...+|++|||..-
T Consensus 1 ~ip~~llaRIL~-~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~----~~~~~~d~~LeveDLEki 72 (88)
T 3v9r_B 1 MLSKEALIKILS-QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDING----ERGDKSPLELSHQDLERI 72 (88)
T ss_dssp CCCSHHHHHHHT-TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccCCCCCeeehHHHHHH
Confidence 389999999999 889988888754444444444444444443322111111111 112344478999999864
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=76.02 E-value=5.1 Score=28.86 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHH
Q 032526 53 DVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 112 (139)
Q Consensus 53 D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~ 112 (139)
-|+++.-|+=.+.+|+.+|+.||..|++-. +|-|+++||+..|++
T Consensus 41 s~~~i~aL~E~~~~~~~~ia~Da~~fA~HA---------------gRkTI~~eDV~La~R 85 (107)
T 3b0b_B 41 SKQTVAAISEITFRQCENFARDLEMFARHA---------------KRSTITSEDVKLLAR 85 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSEECHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcCcCCHHHHHHHHH
Confidence 455666777778899999999999999631 234899999988765
No 27
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=72.87 E-value=6.1 Score=25.19 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHH
Q 032526 38 ELVEHYLAKSGFQCPDVRLIRLVAVATQKF----VAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 113 (139)
Q Consensus 38 ~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKF----isDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~E 113 (139)
++...||.+-.+. +|..+..|.. .|.-| |..++.+|.-++ +|. .+..+|++||..||.+
T Consensus 10 ~Il~~~l~~~~~~-~~~dl~~la~-~t~G~SGADi~~l~~eA~~~a-~~~--------------~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 10 DILKIHSRKMNLT-RGINLRKIAE-LMPGASGAEVKGVCTEAGMYA-LRE--------------RRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHTTSEEC-TTCCHHHHHH-TCTTCCHHHHHHHHHHHHHHH-HHT--------------TCSEECHHHHHHHHHH
T ss_pred HHHHHHhcCCCCC-CccCHHHHHH-HcCCCCHHHHHHHHHHHHHHH-HHh--------------CCCCCCHHHHHHHHHH
Confidence 3556666654442 4555655544 44555 566677776655 321 2357999999999986
No 28
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.05 E-value=1.8 Score=29.93 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.4
Q ss_pred hcccCCCCCCHHHHHHHHHhCCCC
Q 032526 27 SLMGYTPTIPDELVEHYLAKSGFQ 50 (139)
Q Consensus 27 ~LddY~P~IPD~Vt~yyL~~aGf~ 50 (139)
.|..=-|.|||.|+..+|.+++-+
T Consensus 16 eLkQrFPEvPd~VVsqc~~qN~~N 39 (75)
T 2dae_A 16 DLRQKFPEVPEVVVSRCMLQNNNN 39 (75)
T ss_dssp HHHHHSSSSCHHHHHHHHTTTTSC
T ss_pred HHHHhcccCcHHHHHHHHHHhccC
Confidence 344445999999999999999865
No 29
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=69.78 E-value=11 Score=30.87 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=54.3
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKD 97 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd 97 (139)
...|++.+. . +|+ -.+.++|..---.-+.--+.-+...|+..|+.||..|++-.
T Consensus 156 ~~vLrD~i~-i-----~~~-----RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA--------------- 209 (235)
T 2l5a_A 156 TSVLRDIID-I-----SDE-----EDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA--------------- 209 (235)
T ss_dssp HHHHHHHHH-H-----TCC-----TTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHhhc-c-----cHH-----HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 456777764 1 233 57888999864444777888889999999999999998531
Q ss_pred cceeeeHHHHHHHHHHhC
Q 032526 98 KRLILTMEDLSKALREYG 115 (139)
Q Consensus 98 ~k~vLTmEDL~~AL~EyG 115 (139)
+|-|.|.+|+.-||+..|
T Consensus 210 ~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 210 KRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TCCSCCHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHhcC
Confidence 123678999999999876
No 30
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=62.96 E-value=21 Score=24.83 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHH
Q 032526 44 LAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 112 (139)
Q Consensus 44 L~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~ 112 (139)
+.+.|++.+ |.++-.|+=.+-+++.+|+.|+-.|++- -+|-|.++||+..+++
T Consensus 26 ~~~~g~~vs-~~~i~aL~e~~~~~~~~ia~Dl~~fA~H---------------AgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 26 LSSEDIKYT-PRFINSLLELAYLQLGEMGSDLQAFARH---------------AGRGVVNKSDLMLYLR 78 (90)
T ss_dssp SCSSCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHHTT
T ss_pred HHhcCceeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCccCHHHHHHHHH
Confidence 555677655 4555555566778889999999999863 1245899999987754
No 31
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=62.61 E-value=7.1 Score=28.56 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHH
Q 032526 47 SGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 112 (139)
Q Consensus 47 aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~ 112 (139)
.|+..+ |.++-.|+=++-+|+.+|+.|+-.|++- -+|-|.++||+..+++
T Consensus 44 r~~~vS-~~ai~aL~El~~~~~~~ia~Dl~~fAkH---------------AgRkTI~~eDV~La~R 93 (113)
T 4dra_A 44 KEMQFS-KQTIAAISELTFRQCENFAKDLEMFARH---------------AKRTTINTEDVKLLAR 93 (113)
T ss_dssp HTCCBC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHHTT
T ss_pred cCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCccCHHHHHHHHH
Confidence 355554 4555555666677888999999999863 1245888999887754
No 32
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=51.67 E-value=33 Score=25.90 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHH
Q 032526 44 LAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 112 (139)
Q Consensus 44 L~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~ 112 (139)
....|+..+..-| -.|+=++-+|+.+|+.|+-.|++- -+|-|.++||+..+++
T Consensus 33 ~~~~~~~vS~~ai-~aL~El~~~~~e~ia~DLe~FAkH---------------AGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 33 AEDKGVLFSKQTV-AAISEITFRQAENFARDLEMFARH---------------AKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHTCEECHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHHHT
T ss_pred HHhcCCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCccCHHHHHHHHH
Confidence 3344666554444 445555677778999999999863 1245788888877654
No 33
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=47.94 E-value=6 Score=26.81 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.7
Q ss_pred cccceeeeHHHHHHHHHHhCcccCC
Q 032526 96 KDKRLILTMEDLSKALREYGVNVKH 120 (139)
Q Consensus 96 kd~k~vLTmEDL~~AL~EyGInv~r 120 (139)
-+++-.|+=+.|...|++.||+|.|
T Consensus 32 Ed~~kPlSD~~I~~~L~~~Gi~IaR 56 (76)
T 2ahq_A 32 EDKRKPYSDQEIANILKEKGFKVAR 56 (76)
T ss_dssp CCSSSCCCHHHHHHHHTTTSSCCCH
T ss_pred cCCCCCCCHHHHHHHHHHcCCCccH
Confidence 4456689999999999999999976
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.45 E-value=81 Score=24.35 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHH
Q 032526 40 VEHYLAKSGFQCPDVRLIRLVAVAT---QKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 113 (139)
Q Consensus 40 t~yyL~~aGf~~~D~Rv~RLiSLAa---QKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~E 113 (139)
..+++.+.|+..++.-+..|+.++. =..+-.++..|..++. ...+..+|.+|+..|+..
T Consensus 268 l~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~---------------~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 268 LRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCR---------------KRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---------------HTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHH
Confidence 3445556677766666655555554 2333344444443332 112347899999999886
No 35
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=43.63 E-value=50 Score=21.59 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHHh
Q 032526 39 LVEHYLAKSGFQCPDVRLIRLVAVATQKF----VAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREY 114 (139)
Q Consensus 39 Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKF----isDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~Ey 114 (139)
+...+|.+-.+. +|..+..|.. .|.-| |..++.+|.-++ +|. .+..+|++|+..||..-
T Consensus 9 Il~~~~~~~~~~-~dvdl~~lA~-~t~G~SGADl~~l~~eAa~~a-~r~--------------~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 9 IFRIHSKSMSVE-RGIRWELISR-LCPNSTGAELRSVCTEAGMFA-IRA--------------RRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHTTSCBC-SCCCHHHHHH-TCSSCCHHHHHHHHHHHHHHH-HHH--------------SCSSBCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-CccCHHHHHH-HcCCCcHHHHHHHHHHHHHHH-HHh--------------ccccCCHHHHHHHHHHH
Confidence 445555554443 4555555443 34445 555666665554 331 12359999999999975
Q ss_pred Cccc
Q 032526 115 GVNV 118 (139)
Q Consensus 115 GInv 118 (139)
-..+
T Consensus 72 ~~~~ 75 (88)
T 3vlf_B 72 ISGY 75 (88)
T ss_dssp TC--
T ss_pred hcCc
Confidence 4444
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.34 E-value=65 Score=27.49 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=17.9
Q ss_pred cceeeeHHHHHHHHHHh---CcccCCCCcc
Q 032526 98 KRLILTMEDLSKALREY---GVNVKHQEYF 124 (139)
Q Consensus 98 ~k~vLTmEDL~~AL~Ey---GInv~rP~Yy 124 (139)
.+..+|++|+..|+..- ...+.+=+||
T Consensus 398 ~~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 398 NRYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp TCSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred CCCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 34579999999999752 3334444555
No 37
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.83 E-value=5 Score=24.06 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=21.2
Q ss_pred eeeHHHHHHHHHHhCcccCCCCcccc
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFAD 126 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~d 126 (139)
.+|.+||...|.+.|.+|..+--|+|
T Consensus 19 ~~t~~el~~~l~~~~~~vs~~Tv~R~ 44 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSRD 44 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcCHHHHHHH
Confidence 68999999999999999887655443
No 38
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=38.67 E-value=55 Score=25.10 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHhCCCCCC---ChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeH
Q 032526 32 TPTIPDELVEHYLAKSGFQCP---DVRL----IRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTM 104 (139)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~~~---D~Rv----~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTm 104 (139)
.-+||-.-......+.+-+.. |.|+ .-.|--|++-|+-++..||.-++. . -+|+||+.
T Consensus 75 eLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAi-H--------------AkRVTIm~ 139 (156)
T 3r45_A 75 HLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL-H--------------AGRVTLFP 139 (156)
T ss_dssp CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HTCSEECH
T ss_pred ccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------cCcccccH
Confidence 357898888888888775543 4443 455666899999999999999873 2 24689999
Q ss_pred HHHHHHHHHhCc
Q 032526 105 EDLSKALREYGV 116 (139)
Q Consensus 105 EDL~~AL~EyGI 116 (139)
+|+.-|..=.|+
T Consensus 140 kDIqLArrIrg~ 151 (156)
T 3r45_A 140 KDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHccc
Confidence 999999875554
No 39
>4art_A Structural protein ORF273; viral protein, archaeal virus, extremophiles, bicaudavirus, hyper-thermostability; HET: SO4; 2.15A {Acidianus two-tailed virus} PDB: 4ats_A
Probab=38.63 E-value=14 Score=29.94 Aligned_cols=31 Identities=35% Similarity=0.635 Sum_probs=25.2
Q ss_pred hHHHHHHHhcccCCCCCCHHHHHHHHHhCCCC
Q 032526 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQ 50 (139)
Q Consensus 19 ~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~ 50 (139)
..+.|||-.++-=-|.|.| +..+||.++||.
T Consensus 97 rdfdeflfdidyglpsisd-ilkfylekagfr 127 (279)
T 4art_A 97 RDFDEFLFDIDYGLPSISD-ILKFYLEKAGFR 127 (279)
T ss_dssp SCHHHHHHHHHHCCCCHHH-HHHHHHHHTTCE
T ss_pred cchhhhheecccCCccHHH-HHHHHHHhccce
Confidence 4688999877666788877 568999999994
No 40
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=37.43 E-value=40 Score=25.25 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=31.6
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHH
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSL 62 (139)
..-|..||..|- .|+||.++.+.+++-......+.|+..+-.+
T Consensus 93 a~lLK~flreLP--ePLl~~~l~~~~~~~~~~~~~~~~~~~l~~l 135 (214)
T 3byi_A 93 TGALKMFFRELP--EPLFPYSFFEQFVEAIKKQDNNTRIEAVKSL 135 (214)
T ss_dssp HHHHHHHHHHSS--SCSSCHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456788998887 4999999999999887765555555544433
No 41
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=35.97 E-value=58 Score=21.40 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.4
Q ss_pred ceeeeHHHHHHHHHHh
Q 032526 99 RLILTMEDLSKALREY 114 (139)
Q Consensus 99 k~vLTmEDL~~AL~Ey 114 (139)
+..+|++|+..||...
T Consensus 66 ~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 66 RVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CSEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3589999999999864
No 42
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=35.50 E-value=14 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.2
Q ss_pred cceeeeHHHHHHHHHHhCcc
Q 032526 98 KRLILTMEDLSKALREYGVN 117 (139)
Q Consensus 98 ~k~vLTmEDL~~AL~EyGIn 117 (139)
+|.-+|.+||..+|++.||.
T Consensus 31 ~k~rit~~dL~~~LR~~gi~ 50 (153)
T 3c6f_A 31 KKNKIDINQLQSMLRQAGSF 50 (153)
T ss_dssp HHTTCCHHHHHHHHHHTTCC
T ss_pred hHcCCCHHHHHHHHHHcCCC
Confidence 57889999999999999994
No 43
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=35.44 E-value=19 Score=26.37 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=11.7
Q ss_pred cceeeeHHHHHHHHHHh
Q 032526 98 KRLILTMEDLSKALREY 114 (139)
Q Consensus 98 ~k~vLTmEDL~~AL~Ey 114 (139)
.+..+|++|+..|+.+.
T Consensus 233 ~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 233 GHTSVHTLNFEYAVERV 249 (262)
T ss_dssp ----CCBCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 34579999999999875
No 44
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=33.55 E-value=22 Score=26.46 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=17.9
Q ss_pred eeeeHHHHHHHHHHhCcccCC
Q 032526 100 LILTMEDLSKALREYGVNVKH 120 (139)
Q Consensus 100 ~vLTmEDL~~AL~EyGInv~r 120 (139)
-..|.++|...|++.||+|..
T Consensus 18 ~~~tq~eL~~~L~~~G~~Vtq 38 (149)
T 1b4a_A 18 DIETQDELVDRLREAGFNVTQ 38 (149)
T ss_dssp CCCSHHHHHHHHHHTTCCCCH
T ss_pred CCccHHHHHHHHHHcCCCcCH
Confidence 467899999999999999863
No 45
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=33.39 E-value=39 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=33.2
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 63 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLA 63 (139)
..-|..||..|- .|+||.++.+.+++-+.....+.|+..+-.+.
T Consensus 98 a~lLK~flReLP--ePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll 141 (231)
T 1f7c_A 98 TSALKTYLRMLP--GPLMMYQFQRSFIKAAKLENQESRVSEIHSLV 141 (231)
T ss_dssp HHHHHHHHHTSS--SCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 346788888887 49999999999998877666666666555443
No 46
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=33.17 E-value=99 Score=23.18 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHhCCCCC---CChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHH
Q 032526 33 PTIPDELVEHYLAKSGFQC---PDVR----LIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTME 105 (139)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~~---~D~R----v~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmE 105 (139)
-+||-.-......+.+-+. .|.| -.-.|--|++-|+-++..||.-++. . -+|+||+.+
T Consensus 60 LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAi-H--------------AkRVTIm~k 124 (140)
T 3nqu_A 60 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL-H--------------AGRVTLFPK 124 (140)
T ss_dssp CCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------TTCSEECHH
T ss_pred cccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------cCcccccHH
Confidence 4566555555555444221 2332 2345566888899999999988763 2 247899999
Q ss_pred HHHHHHHHhCc
Q 032526 106 DLSKALREYGV 116 (139)
Q Consensus 106 DL~~AL~EyGI 116 (139)
|+.-|..=.|+
T Consensus 125 DiqLArrirg~ 135 (140)
T 3nqu_A 125 DVQLARRIRGL 135 (140)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhccc
Confidence 99999987776
No 47
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.81 E-value=47 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=35.2
Q ss_pred CCchHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHH
Q 032526 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLV 60 (139)
Q Consensus 16 ~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLi 60 (139)
..+..+....+++.+--|-||.+++.+=|++.| +-+.-+-|++
T Consensus 8 ~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienIL 50 (58)
T 2ejs_A 8 ASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR--SVEITTDNIL 50 (58)
T ss_dssp CCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC--SHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHH
Confidence 356778888889999999999999999999999 5555555554
No 48
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=32.73 E-value=27 Score=21.89 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=16.6
Q ss_pred eeeHHHHHHHHHHhCccc
Q 032526 101 ILTMEDLSKALREYGVNV 118 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv 118 (139)
.||+.+|-..|+.+|+.+
T Consensus 7 kltV~eLK~~Lk~RGL~~ 24 (51)
T 1h1j_S 7 SLTVVQLKDLLTKRNLSV 24 (51)
T ss_dssp GCCHHHHHHHHHHTTCCC
T ss_pred HCcHHHHHHHHHHcCCCC
Confidence 589999999999999987
No 49
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=32.30 E-value=57 Score=20.84 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=13.2
Q ss_pred eeeeHHHHHHHHHHh
Q 032526 100 LILTMEDLSKALREY 114 (139)
Q Consensus 100 ~vLTmEDL~~AL~Ey 114 (139)
..+|++|+..||.+.
T Consensus 54 ~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 54 YVILQSDLEEAYATQ 68 (82)
T ss_dssp SEECHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHH
Confidence 479999999999975
No 50
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=32.22 E-value=96 Score=20.85 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHHhCc
Q 032526 60 VAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGV 116 (139)
Q Consensus 60 iSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~EyGI 116 (139)
+--|++-|+-.+..||.-++. .-+|.|++-+|+.-|..-.|.
T Consensus 34 LQea~Eaylv~lfeda~l~A~---------------HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 34 LQEASEAYLVALFEDTNLCAI---------------HAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HcCCccCcHhhHHHHHHHhCc
Confidence 445788888888888888763 123689999999999988775
No 51
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.92 E-value=50 Score=21.61 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=34.7
Q ss_pred CCCchHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHH
Q 032526 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLV 60 (139)
Q Consensus 15 ~~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLi 60 (139)
+..+.++....+++.+--|-||.+++.+=|++.| +-+.-+-|++
T Consensus 7 ~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienIL 50 (61)
T 2ekf_A 7 GSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTG--CVDLTITNLL 50 (61)
T ss_dssp CCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC--CHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHH
Confidence 3346678888888888999999999999999999 5555555554
No 52
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=29.90 E-value=35 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=32.5
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHH
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSL 62 (139)
..-|..||..|- .|+||.++.+.+++-+.....+.|+..+-.+
T Consensus 81 a~lLK~flreLp--~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~l 123 (201)
T 3msx_B 81 ASVLKDFLRNIP--GSIFSSDLYDHWVSVMDQGNDEEKINTVQRL 123 (201)
T ss_dssp HHHHHHHHHTST--TTTTTGGGHHHHHHGGGSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCCCHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 455778888887 4999999999999988766666666555444
No 53
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=29.33 E-value=53 Score=20.79 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 032526 35 IPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATD 74 (139)
Q Consensus 35 IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~D 74 (139)
|-.+=+...|..+|.+..+.|+..+++...-|=|.|++..
T Consensus 17 ~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 17 INEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56 (58)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHc
Confidence 3355678899999999999999999988877777777654
No 54
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=29.04 E-value=34 Score=19.45 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032526 59 LVAVATQKFVAEVAT 73 (139)
Q Consensus 59 LiSLAaQKFisDIa~ 73 (139)
|=.+|||+||.-+.+
T Consensus 14 l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 14 LDSRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHHHhc
Confidence 457899999988764
No 55
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=29.03 E-value=78 Score=24.41 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=32.5
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHH
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSL 62 (139)
..-|..||..|- .|+||.++-+.+++-......+.++..+-.+
T Consensus 125 a~lLK~fLReLP--ePLl~~~l~~~~~~~~~~~~~~~~~~~l~~l 167 (246)
T 3fk2_A 125 AGAMKSFFSELP--DPLVPYNMQIDLVEAHKINDREQKLHALKEV 167 (246)
T ss_dssp HHHHHHHHHHSS--SCSSCHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CccCCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 345788888886 5999999999999988776666666555443
No 56
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=28.73 E-value=47 Score=23.59 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=30.2
Q ss_pred CCCchHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCC
Q 032526 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQC 51 (139)
Q Consensus 15 ~~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~ 51 (139)
.-+...+++.+..=.+....+|++|.+|+.+...+..
T Consensus 126 ~ISST~IR~~l~~G~~~~~~vP~~V~~yi~~~~ly~~ 162 (169)
T 1o6b_A 126 FLSSSIVKEVARYDGSVSEFVPPEVELALQQKFRQGG 162 (169)
T ss_dssp TCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHHHSCS
T ss_pred cCcHHHHHHHHHcCCChhHHCCHHHHHHHHHhhCcCC
Confidence 4568889999987778888999999999888765544
No 57
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=28.60 E-value=33 Score=21.83 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=17.2
Q ss_pred eeeeHHHHHHHHHHhCccc
Q 032526 100 LILTMEDLSKALREYGVNV 118 (139)
Q Consensus 100 ~vLTmEDL~~AL~EyGInv 118 (139)
..||+.+|...|+.+|+.+
T Consensus 11 ~klkV~eLK~~L~~rGL~~ 29 (55)
T 2do1_A 11 HKLKLAELKQECLARGLET 29 (55)
T ss_dssp TTSCHHHHHHHHHHHTCCC
T ss_pred HHCcHHHHHHHHHHcCCCC
Confidence 3689999999999999987
No 58
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=28.08 E-value=1.4e+02 Score=22.41 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCCchHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 032526 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDAL 76 (139)
Q Consensus 15 ~~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~DA~ 76 (139)
..+++.+-+|-..|-.-...|+|+..+- |..+||. |..|.-|+.+++..=+.--++.++
T Consensus 134 ~~~erA~l~~a~~lt~~~~~v~d~~~~~-l~~agfs--d~eivel~~~ia~~~~~n~~n~~~ 192 (207)
T 3lvy_A 134 DPKLDTLAKFTIAVINTKGRVGDEAFAD-FLEVGYT--PENALDVVLGVSLASLCNYANNMA 192 (207)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHH-HHHTTCC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778787776334699999887 5678986 999999999998876666666544
No 59
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=28.00 E-value=48 Score=18.58 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 032526 60 VAVATQKFVAEVAT 73 (139)
Q Consensus 60 iSLAaQKFisDIa~ 73 (139)
=.+++||||..+.+
T Consensus 15 ~~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 15 KQMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 35799999988764
No 60
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=27.89 E-value=1e+02 Score=20.97 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHHHHHHHHHhCc
Q 032526 58 RLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGV 116 (139)
Q Consensus 58 RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmEDL~~AL~EyGI 116 (139)
-.+--|++-|+-++..||.-++. . -+|+|+..+|+.-|..=+|.
T Consensus 34 ~aLQea~E~ylv~Lfeda~lcAi-H--------------AkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 34 LALQEAAEAFLVHLFEDAYLLTL-H--------------AGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-H--------------TTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H--------------cCCccCcHHHHHHHHHHccc
Confidence 34455778888888888887763 2 24789999999999887775
No 61
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=27.88 E-value=35 Score=26.06 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=33.1
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 63 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLA 63 (139)
..-|..||..|- .|+||.++.+.++.-+.....+.|+..+-.+.
T Consensus 92 a~lLK~fLReLP--ePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll 135 (228)
T 3kuq_A 92 ADMLKQYFRDLP--EPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI 135 (228)
T ss_dssp HHHHHHHHHHSS--SCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345778888886 49999999999998777666777776655443
No 62
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=27.75 E-value=32 Score=24.03 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.2
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccc
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFA 125 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~ 125 (139)
.|+-+++..+|.+++.-|+||=-..
T Consensus 79 ~ls~~~~~~lm~~~p~LikRPIv~~ 103 (121)
T 3rdw_A 79 GLTQDQLLQAMADNPKLIERPIVVT 103 (121)
T ss_dssp TCCHHHHHHHHHHCGGGBCCCEEEE
T ss_pred cCCHHHHHHHHHhCccceeCCEEEE
Confidence 5899999999999999999996544
No 63
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=27.52 E-value=36 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.6
Q ss_pred ceeeeHHHHHHHHHHhCccc
Q 032526 99 RLILTMEDLSKALREYGVNV 118 (139)
Q Consensus 99 k~vLTmEDL~~AL~EyGInv 118 (139)
-..||+.||-..|+.+|+.+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~ 29 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDT 29 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCC
T ss_pred HHHCcHHHHHHHHHHcCCCC
Confidence 34699999999999999976
No 64
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=26.84 E-value=33 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.3
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccc
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFA 125 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~ 125 (139)
.|+-+++..+|.+++.-|+||=-..
T Consensus 78 ~ls~~~~~~lm~~~p~LikRPIv~~ 102 (119)
T 3f0i_A 78 QLSDDALFAAMAEHPKLIERPIVVC 102 (119)
T ss_dssp TCCHHHHHHHHHHCGGGBCSCEEEE
T ss_pred cCCHHHHHHHHHhChhheeCCEEEE
Confidence 6899999999999999999996544
No 65
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=25.97 E-value=2.5e+02 Score=22.30 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 032526 39 LVEHYLAKSGFQCPDVRLIRLVAVATQKF----VAEVATDALQQCK 80 (139)
Q Consensus 39 Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKF----isDIa~DA~q~~k 80 (139)
+..++|.+.+...+|.-+..|. -.+.-| |..++..|...+-
T Consensus 225 il~~~l~~~~~~~~~~~l~~la-~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 225 MFEINVGDTPSVLTKEDYRTLG-AMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp HHHHHHTTSCBCCCHHHHHHHH-HHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 4566676676655555554443 344443 5566777776663
No 66
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=25.77 E-value=36 Score=23.55 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=22.7
Q ss_pred eeeHHHHHHHHHHhCcccCCCCcccc
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFAD 126 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~d 126 (139)
.|+-+++..+|.+++.=|+||=-..+
T Consensus 73 ~ls~~~~~~~m~~~p~LikRPiv~~~ 98 (120)
T 3l78_A 73 ELSVSELINLISKNPSLLRRPIIMDN 98 (120)
T ss_dssp GCCHHHHHHHHHHCGGGBCSCEEECS
T ss_pred cCCHHHHHHHHHhCccceeccEEEEC
Confidence 57999999999999999999966544
No 67
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.58 E-value=56 Score=18.63 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 032526 59 LVAVATQKFVAEVAT 73 (139)
Q Consensus 59 LiSLAaQKFisDIa~ 73 (139)
|=.+|+|+||.-+.+
T Consensus 14 l~~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 14 MDKIHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 457899999998865
No 68
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=25.53 E-value=36 Score=23.70 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccccC
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFADN 127 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~d~ 127 (139)
.|+-+++..+|.+++.=|+||=-..+.
T Consensus 78 ~ls~~~~~~lm~~~p~LikRPIv~~~~ 104 (120)
T 3fz4_A 78 QLSLDEAANLLASDGMLIKRPLLVKEG 104 (120)
T ss_dssp GCCHHHHHHHHHHCGGGBCSCEEEETT
T ss_pred cCCHHHHHHHHHhChheEeccEEEECC
Confidence 689999999999999999999665443
No 69
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=25.29 E-value=37 Score=23.05 Aligned_cols=27 Identities=7% Similarity=-0.140 Sum_probs=23.1
Q ss_pred eeeeHHHHHHHHHHhCcccCCCCcccc
Q 032526 100 LILTMEDLSKALREYGVNVKHQEYFAD 126 (139)
Q Consensus 100 ~vLTmEDL~~AL~EyGInv~rP~Yy~d 126 (139)
..|+-+++..+|.+++.-++||=-..+
T Consensus 71 ~~~~~~~~~~~l~~~p~likrPiv~~~ 97 (114)
T 1rw1_A 71 ADLDEAKAIELMLAQPSMIKRPVLELG 97 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCEEECS
T ss_pred ccCCHHHHHHHHHhChhheeCcEEEEC
Confidence 368999999999999999999965443
No 70
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=25.21 E-value=35 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=31.4
Q ss_pred chHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHH
Q 032526 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (139)
Q Consensus 18 d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSL 62 (139)
..-|..||..|- .|+||.++.+.+++-+.....+.|+..+-.+
T Consensus 83 a~lLK~flreLp--ePLl~~~~~~~~~~~~~~~~~~~~~~~l~~l 125 (202)
T 2osa_A 83 TGALKLYFRDLP--IPLITYDAYPKFIESAKIMDPDEQLETLHEA 125 (202)
T ss_dssp HHHHHHHHHTCS--SCSSCTTTHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CccCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456778888887 5999999999998877666556666555443
No 71
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.49 E-value=2e+02 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=14.8
Q ss_pred ceeeeHHHHHHHHHHhCc
Q 032526 99 RLILTMEDLSKALREYGV 116 (139)
Q Consensus 99 k~vLTmEDL~~AL~EyGI 116 (139)
...+|++|+..||.+..-
T Consensus 319 ~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 319 VRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp CCCBCHHHHHHHHHHHGG
T ss_pred cCCcCHHHHHHHHHhcCC
Confidence 457999999999998643
No 72
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=24.30 E-value=46 Score=24.82 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=30.9
Q ss_pred hHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHH
Q 032526 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (139)
Q Consensus 19 ~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSL 62 (139)
.-|..||..|- .|+||.++.+.+++-+.....+.|+..+-.+
T Consensus 85 ~lLK~flreLP--ePLi~~~l~~~~~~~~~~~~~~~~~~~l~~l 126 (209)
T 2ee4_A 85 GALKAFFADLP--DPLIPYSLHPELLEAAKIPDKTERLHALKEI 126 (209)
T ss_dssp HHHHHHHHHSS--SCSSCTTTHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CccCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45678888886 5999999999999887766555666555443
No 73
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=23.96 E-value=28 Score=21.57 Aligned_cols=17 Identities=6% Similarity=0.448 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCcccCC
Q 032526 104 MEDLSKALREYGVNVKH 120 (139)
Q Consensus 104 mEDL~~AL~EyGInv~r 120 (139)
+.++..+|+++|+||..
T Consensus 19 L~~I~~~la~~~inI~~ 35 (88)
T 2ko1_A 19 TNQITGVISKFDTNIRT 35 (88)
T ss_dssp HHHHHHHHTTSSSCEEE
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 68999999999999953
No 74
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=23.33 E-value=43 Score=22.94 Aligned_cols=26 Identities=8% Similarity=-0.125 Sum_probs=22.6
Q ss_pred eeeeHHHHHHHHHHhCcccCCCCccc
Q 032526 100 LILTMEDLSKALREYGVNVKHQEYFA 125 (139)
Q Consensus 100 ~vLTmEDL~~AL~EyGInv~rP~Yy~ 125 (139)
..|+-+++..+|.+++.-++||=-..
T Consensus 76 ~~~~~~~~~~~l~~~p~likrPiv~~ 101 (120)
T 2kok_A 76 SNVDAASARELMLAQPSMVKRPVLER 101 (120)
T ss_dssp HSCCHHHHHHHHHHCGGGBCSSEEEE
T ss_pred ccCCHHHHHHHHHhCcccEECCEEEE
Confidence 36899999999999999999996544
No 75
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=23.13 E-value=76 Score=20.02 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.4
Q ss_pred ceeeeHHHHHHHHHHhC
Q 032526 99 RLILTMEDLSKALREYG 115 (139)
Q Consensus 99 k~vLTmEDL~~AL~EyG 115 (139)
+..+|++|+..||.+.-
T Consensus 56 ~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CSSBCHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHHHc
Confidence 46899999999999763
No 76
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=22.85 E-value=74 Score=21.02 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=36.1
Q ss_pred HHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 032526 24 FLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVAT 73 (139)
Q Consensus 24 fL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAaQKFisDIa~ 73 (139)
+|..++.-. .|-.+=+...|..+|.+..+.|+..+++-..-|=|.|++.
T Consensus 9 Lll~~~g~~-~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa 57 (70)
T 2lbf_B 9 LLAALGGNS-SPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIA 57 (70)
T ss_dssp HHHHHHTCS-SCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHT
T ss_pred HHHHhCCCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHH
Confidence 344444441 2234556789999999999999999999888888877764
No 77
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=22.67 E-value=47 Score=22.60 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.9
Q ss_pred ceeeeHHHHHHHHHHhCccc
Q 032526 99 RLILTMEDLSKALREYGVNV 118 (139)
Q Consensus 99 k~vLTmEDL~~AL~EyGInv 118 (139)
-..||+.||-..|+.+|+.+
T Consensus 26 l~klkVaeLK~eLk~RGL~~ 45 (75)
T 2kvu_A 26 LDDMKVAELKQELKLRSLPV 45 (75)
T ss_dssp TTTSCHHHHHHHHHHTTCCC
T ss_pred HHHCcHHHHHHHHHHcCCCC
Confidence 34699999999999999988
No 78
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=22.58 E-value=51 Score=19.22 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032526 59 LVAVATQKFVAEVAT 73 (139)
Q Consensus 59 LiSLAaQKFisDIa~ 73 (139)
|=.+|+|+||.-+.+
T Consensus 14 l~~~aak~fl~wL~~ 28 (33)
T 2l63_A 14 LDNLAARDFINWLIQ 28 (33)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 457899999988764
No 79
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=22.21 E-value=44 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCcccCCCCc
Q 032526 104 MEDLSKALREYGVNVKHQEY 123 (139)
Q Consensus 104 mEDL~~AL~EyGInv~rP~Y 123 (139)
+.+++..|+++|+||..=.-
T Consensus 19 la~vt~~la~~~~NI~~i~~ 38 (91)
T 1zpv_A 19 VAGVSGKIAELGLNIDDISQ 38 (91)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEe
Confidence 57899999999999964333
No 80
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=22.09 E-value=97 Score=19.79 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.6
Q ss_pred eHHHHHHHHHHhCcccC
Q 032526 103 TMEDLSKALREYGVNVK 119 (139)
Q Consensus 103 TmEDL~~AL~EyGInv~ 119 (139)
.+|++...|.+.||.|-
T Consensus 44 ~id~i~~~L~~~gI~Vv 60 (72)
T 2k6x_A 44 LIERIHEELEKHGINIV 60 (72)
T ss_dssp HHHHHHHHHHHTCCCCB
T ss_pred HHHHHHHHHHHCCCccc
Confidence 57888899999999983
No 81
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=21.93 E-value=46 Score=23.89 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=22.8
Q ss_pred eeeHHHHHHHHHHhCcccCCCCcccc
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFAD 126 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~d 126 (139)
.|+-+++..+|.+++.-|+||=-..+
T Consensus 75 ~ls~~~~~~lm~~~P~LikRPiv~~~ 100 (141)
T 1s3c_A 75 KFTDDQLIDFMLQHPILINRPIVVTP 100 (141)
T ss_dssp CCCHHHHHHHHHHSGGGBCSCEEEET
T ss_pred cCCHHHHHHHHHhCccceEccEEEEC
Confidence 68999999999999999999965443
No 82
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.36 E-value=1.5e+02 Score=25.31 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.4
Q ss_pred cceeeeHHHHHHHHHH
Q 032526 98 KRLILTMEDLSKALRE 113 (139)
Q Consensus 98 ~k~vLTmEDL~~AL~E 113 (139)
++..+|++|+..||.+
T Consensus 373 ~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 373 RRIHVTQEDFELAVGK 388 (405)
T ss_dssp TCSBCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 3567999999999985
No 83
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=21.29 E-value=43 Score=22.96 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=15.1
Q ss_pred eeeHHHHHHHHHHhCc
Q 032526 101 ILTMEDLSKALREYGV 116 (139)
Q Consensus 101 vLTmEDL~~AL~EyGI 116 (139)
.+|.++|...|.++||
T Consensus 99 ~~~~~~le~~L~~~g~ 114 (118)
T 3evi_A 99 NLKLEELEWKLAEVGA 114 (118)
T ss_dssp SCCHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHcCC
Confidence 6899999999999998
No 84
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=21.16 E-value=35 Score=23.79 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=23.3
Q ss_pred eeeeHHHHHHHHHHhCcccCCCCcccc
Q 032526 100 LILTMEDLSKALREYGVNVKHQEYFAD 126 (139)
Q Consensus 100 ~vLTmEDL~~AL~EyGInv~rP~Yy~d 126 (139)
-.|+-+++..+|.+++.=|+||=-..+
T Consensus 78 ~~ls~~~~~~lm~~~p~LikRPiv~~~ 104 (120)
T 3gkx_A 78 PTMTEEEQIALLATNGKLVKRPLVVTE 104 (120)
T ss_dssp GGSCHHHHHHHHTTCGGGBCSCEEECS
T ss_pred ccCCHHHHHHHHHhChhheECcEEEEC
Confidence 468999999999999999999965543
No 85
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.05 E-value=90 Score=20.42 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCchHHHHHHHhcccCCCCCCHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 032526 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVAT 64 (139)
Q Consensus 16 ~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~RLiSLAa 64 (139)
....++.+-+.+|.+-=|.|-.+|+.+-|.++|=+- |.-|..|+.+..
T Consensus 13 ~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~v-d~aId~LL~ms~ 60 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAV-DATIDQLLQMNL 60 (67)
T ss_dssp CCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCH-HHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCH-HHHHHHHHhcCC
Confidence 344555666666666689999999999999988543 677888887754
No 86
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=20.76 E-value=2.4e+02 Score=20.82 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHhCCCC-CCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeeHHH
Q 032526 32 TPTIPDELVEHYLAKSGFQ-CPDVRL----IRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMED 106 (139)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~-~~D~Rv----~RLiSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~k~vLTmED 106 (139)
.-+||-.-......+.--+ ..|.|+ .-.|--|++-|+-.+..||.-++. . -+|+||..+|
T Consensus 60 ~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~-H--------------AkRvTi~~kD 124 (136)
T 1tzy_C 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI-H--------------AKRVTIMPKD 124 (136)
T ss_dssp SCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------TTCSEECHHH
T ss_pred hhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------cCCccCcHHh
Confidence 3467765555544443100 014333 223455888888899888888763 2 2368999999
Q ss_pred HHHHHHHhCcc
Q 032526 107 LSKALREYGVN 117 (139)
Q Consensus 107 L~~AL~EyGIn 117 (139)
+.-|..-.|..
T Consensus 125 iqLa~rirg~~ 135 (136)
T 1tzy_C 125 IQLARRIRGER 135 (136)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhCcC
Confidence 99999888753
No 87
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=20.74 E-value=1.1e+02 Score=21.92 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=27.0
Q ss_pred CCCchHHHHHHHhcccCCCCCCHHHHHHHHHh
Q 032526 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAK 46 (139)
Q Consensus 15 ~~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~ 46 (139)
.-+...+++.+..=++....+|++|.+|+.++
T Consensus 153 ~iSST~IR~~l~~g~~~~~lvP~~V~~yI~~~ 184 (189)
T 2qtr_A 153 AVSSSLLRERYKEKKTCKYLLPEKVQVYIERN 184 (189)
T ss_dssp CCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHT
T ss_pred ccCHHHHHHHHHcCCCchhcCCHHHHHHHHHc
Confidence 56788999999877788889999999987654
No 88
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=20.56 E-value=1.2e+02 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=26.9
Q ss_pred CCchHHHHHHHhcccCCCCCCHHHHHHHHHhC
Q 032526 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKS 47 (139)
Q Consensus 16 ~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~a 47 (139)
-+...+++.+..=.+....+|++|.+|+.++.
T Consensus 137 iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~ 168 (173)
T 1vlh_A 137 ISSSLVKEVALYGGDVTEWVPPEVARALNEKL 168 (173)
T ss_dssp CCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHT
T ss_pred eeHHHHHHHHHcCCChhHcCCHHHHHHHHHHH
Confidence 56788999887767888999999999988764
No 89
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=20.41 E-value=61 Score=18.72 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 032526 59 LVAVATQKFVAEVAT 73 (139)
Q Consensus 59 LiSLAaQKFisDIa~ 73 (139)
|=..|||+||.-+.+
T Consensus 6 Le~~aakdFv~WL~n 20 (31)
T 3c5t_B 6 MEEEAVRLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 557899999987765
No 90
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=20.24 E-value=77 Score=18.95 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 032526 59 LVAVATQKFVAEVAT 73 (139)
Q Consensus 59 LiSLAaQKFisDIa~ 73 (139)
|=.+|+|+||..+.+
T Consensus 14 l~~~~ak~fl~~l~~ 28 (39)
T 2d2p_A 14 RKQMAVKKYLAAVLG 28 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 346899999999996
No 91
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=20.22 E-value=47 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=19.8
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccccC
Q 032526 101 ILTMEDLSKALREYGVNVKHQEYFADN 127 (139)
Q Consensus 101 vLTmEDL~~AL~EyGInv~rP~Yy~d~ 127 (139)
-++.++-...|++.|+.+..-..|.+.
T Consensus 15 G~~~~~A~~~L~~~Gl~~~~~~~~~~~ 41 (71)
T 3ouv_A 15 GQTVDVAQKNMNVYGFTKFSQASVDSP 41 (71)
T ss_dssp TCBHHHHHHHHHHTTCCCEEEEEECCS
T ss_pred CCCHHHHHHHHHHCCCeEEEEEEeCCC
Confidence 468899999999999987653333333
No 92
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=20.10 E-value=66 Score=22.27 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=25.9
Q ss_pred CCCchHHHHHHHhcccCCCCCCHHHHHHHHHh
Q 032526 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAK 46 (139)
Q Consensus 15 ~~~d~~L~efL~~LddY~P~IPD~Vt~yyL~~ 46 (139)
.-+...+++.+..=++..-.+|++|.+|+.++
T Consensus 125 ~iSST~IR~~i~~g~~~~~~vP~~V~~yI~~~ 156 (158)
T 1qjc_A 125 FISSSLVKEVARHQGDVTHFLPENVHQALMAK 156 (158)
T ss_dssp TCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCChhHhCCHHHHHHHHHh
Confidence 46778889988766677788999999998765
Done!