BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032529
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 70 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 126
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 127 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 185
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 186 NWENVTERY 194
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 70 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 126
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 127 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 185
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 186 NWENVTERY 194
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAY+LQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAY+LQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVW+HAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWDHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + N DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNNDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVW HAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWAHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 138 bits (348), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + N DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNADPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 138 bits (348), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSG+ W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGFGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 88/131 (67%), Gaps = 5/131 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NLA GGEP + L AI + FGSL+ L +++SA A+QGSGW W
Sbjct: 70 GGHINHSIFWTNLAK---DGGEPS-AELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + K L V T ANQDPL LVPL GIDVWEHAYYLQYKNV+PDY+ IW +
Sbjct: 126 LGYCPKGKILKVATCANQDPL-EATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIA 184
Query: 126 NWKYASDVYQK 136
NWK S+ + K
Sbjct: 185 NWKNVSERFAK 195
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDV EHAYYLQYKNV+PDYLK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVAEHAYYLQYKNVRPDYLKAIWNVI 184
Query: 126 NWKYASDVY 134
NW+ ++ Y
Sbjct: 185 NWENVTERY 193
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NLA GGEP L I FGSL+ L +++S A+QGSGW W
Sbjct: 70 GGHINHSIFWTNLAK---DGGEPS-KELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + K L + T ANQDPL +VPL GIDVWEHAYYLQYKNV+PDY+ IW +
Sbjct: 126 LGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIA 181
Query: 126 NWKYASDVY 134
NWK S+ +
Sbjct: 182 NWKNISERF 190
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 4/127 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHA LQ KNV+PD LK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAXXLQXKNVRPDXLKAIWNVI 184
Query: 126 NWKYASD 132
NW+ ++
Sbjct: 185 NWENVTE 191
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 4/127 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHSIFW NL+P GG P L AI FGS + +K++A +QGSGW W
Sbjct: 69 GGHINHSIFWTNLSP---NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
LG + E L + NQDPL L+PLLGIDVWEHA LQ KNV+PD LK IWNV+
Sbjct: 126 LGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAXXLQXKNVRPDXLKAIWNVI 184
Query: 126 NWKYASD 132
NW+ ++
Sbjct: 185 NWENVTE 191
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSS--LGWAIDTHFGSLEALIQKMSAEGAALQGSGW 63
GH NHS+FWKNLAPV GG+ P +S LG I +GS+ LI +++ A +QGSGW
Sbjct: 75 GGHTNHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLIDITNSKLAGIQGSGW 134
Query: 64 VWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
++ + + L V TTANQD + AP LVP++ ID WEHAYYLQY+NVK DY K IW
Sbjct: 135 AFIVKNKQNGGALDVVTTANQDTI--SAPHLVPIIAIDAWEHAYYLQYQNVKLDYFKAIW 192
Query: 123 NVMNWKYASDVY 134
NV+NW A Y
Sbjct: 193 NVINWAEAESRY 204
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 83/130 (63%), Gaps = 4/130 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
G NH +FW+NLAP GGEPP +L AID FGSL+ LI+ + + A +QGSGW +
Sbjct: 84 GGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAF 143
Query: 66 LGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
+ + + +L V T NQD T LVPL+ ID WEHAYYLQY+N K DY K IWNV
Sbjct: 144 IVKNLSNGGKLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNKKADYFKAIWNV 200
Query: 125 MNWKYASDVY 134
+NWK AS +
Sbjct: 201 VNWKEASRRF 210
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 83/130 (63%), Gaps = 4/130 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
G NH +FW+NLAP GGEPP +L AID FGSL+ LI+ + + A +QGSGW +
Sbjct: 84 GGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAF 143
Query: 66 LGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
+ + + +L V T NQD T LVPL+ ID WEHAYYLQY+N K DY K IWNV
Sbjct: 144 IVKNLSNGGKLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNKKADYFKAIWNV 200
Query: 125 MNWKYASDVY 134
+NWK AS +
Sbjct: 201 VNWKEASRRF 210
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 77/130 (59%), Gaps = 4/130 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
G NH +FW+NLAP GGEPP +L AID FGSL+ LI + A +QGSGW +
Sbjct: 76 GGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSGWAF 135
Query: 66 LGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
+ + + L V T NQD T LVPL+ ID WEHAYYLQY+N DY IWNV
Sbjct: 136 IVXNLSNGGXLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNXXADYFXAIWNV 192
Query: 125 MNWKYASDVY 134
+NW AS +
Sbjct: 193 VNWXEASRRF 202
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 6/131 (4%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NHS+FW+ L P G + P L AID FG +AL +K++ GSGW W
Sbjct: 78 GGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAW 134
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L D F +L V +T NQD V + P++GIDVWEHAYYL+Y+N + DYL+ IWNV+
Sbjct: 135 LVKDP-FGKLHVLSTPNQDNPVMEG--FTPIVGIDVWEHAYYLKYQNRRADYLQAIWNVL 191
Query: 126 NWKYASDVYQK 136
NW A + ++K
Sbjct: 192 NWDVAEEFFKK 202
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
G NH +FW+NLAP GGEPP +L AID FGSL+ LI + A +QGSGW +
Sbjct: 76 GGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSGWAF 135
Query: 66 LGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
+ + + L V T NQD T LVPL+ ID WEHAYYLQY+N DY IWNV
Sbjct: 136 IVXNLSNGGXLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNXXADYFXAIWNV 192
Query: 125 MNWKYAS 131
+NW AS
Sbjct: 193 VNWXEAS 199
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 7/131 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH NH+ FW L+P GG P L AI+ FGS +A ++ + GA GSGW W
Sbjct: 87 GGHANHTFFWTILSP---NGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAW 143
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L ++ L V +T NQD +T+ T P++G+DVWEHAYYL Y+N +PDY+ WNV+
Sbjct: 144 LVVNN--GELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVV 199
Query: 126 NWKYASDVYQK 136
+W A YQ+
Sbjct: 200 DWNAAEKRYQE 210
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALQGSGWV 64
GH+NHS+FWKNLAP GG+ + L AI+ +GS + + +QGSGW
Sbjct: 83 GGHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWG 142
Query: 65 WLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
WL D +L + TT +QDP+ AP + G+D+WEHAYYLQY N K Y K IWNV
Sbjct: 143 WLVTDGPKGKLDITTTHDQDPVTGAAP----VFGVDMWEHAYYLQYLNDKASYAKGIWNV 198
Query: 125 MNWKYASDVY 134
+NW A + Y
Sbjct: 199 INWAEAENRY 208
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEP--PHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGW 63
AGHVNHS+FWKN+AP +G P P LG AID FGS + + + +A +QGSGW
Sbjct: 70 AGHVNHSVFWKNMAP---KGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGW 126
Query: 64 VWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L D KR+ ++ +Q+ L + +PLL +D+WEHA+YLQYKNVK DY+K+ W
Sbjct: 127 ASLVWDPLGKRINTLQFYDHQNNLPAGS---IPLLQLDMWEHAFYLQYKNVKGDYVKSWW 183
Query: 123 NVMNW 127
NV+NW
Sbjct: 184 NVVNW 188
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 82/138 (59%), Gaps = 12/138 (8%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
AGHVNH+I+WKNL+P GG+ P L AI FGS + + A +QGSGW
Sbjct: 71 AGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAA 127
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
LG DT +L++ +Q T P +VPLL +D+WEHA+YLQYKNVK D+ K WNV
Sbjct: 128 LGWDTLGNKLLIFQVYDQQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNV 184
Query: 125 MNW-----KYASDVYQKE 137
+NW +YA+ Q +
Sbjct: 185 VNWADVQSRYAAATSQTK 202
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 108 bits (270), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 12/138 (8%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
AGHVNH+I+WKNL+P GG+ P L AI FGS + + A +QGSGW
Sbjct: 71 AGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAA 127
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
LG DT +L++ ++ T P +VPLL +D+WEHA+YLQYKNVK D+ K WNV
Sbjct: 128 LGWDTLGNKLLIFQVYDEQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNV 184
Query: 125 MNW-----KYASDVYQKE 137
+NW +YA+ Q +
Sbjct: 185 VNWADVQSRYAAATSQTK 202
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 12/138 (8%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
AGHVNH+I+WKNL+P GG+ P L AI FGS + + A +QGSGW
Sbjct: 71 AGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAA 127
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAP-TLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
LG DT +L++ + T P +VPLL +D+WEHA+YLQYKNVK D+ K WNV
Sbjct: 128 LGWDTLGNKLLIFQVYDHQ---TNFPLAIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNV 184
Query: 125 MNW-----KYASDVYQKE 137
+NW +YA+ Q +
Sbjct: 185 VNWADVQSRYAAATSQTK 202
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 12/138 (8%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
AGHVNH+I+WKNL+P GG+ P L AI FGS + + A +QGSGW
Sbjct: 71 AGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAA 127
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
LG DT +L++ + T P +VPLL +D+WEHA+YLQYKNVK D+ K WNV
Sbjct: 128 LGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNV 184
Query: 125 MNW-----KYASDVYQKE 137
+NW +YA+ Q +
Sbjct: 185 VNWADVQSRYAAATSQTK 202
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH NHS+FWK L + G L AI+ FGS++ + A+ GSGW WL
Sbjct: 77 GHANHSLFWKGL-----KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWL 131
Query: 67 GLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L + +L V +TANQD PL+ +A + P++G+DVWEHAYYL+++N +PDY+K W
Sbjct: 132 VLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW 189
Query: 123 NVMNWKYAS 131
NV+NW A+
Sbjct: 190 NVVNWDEAA 198
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH NHS+FWK L + G L AI+ FGS++ + A+ GSGW WL
Sbjct: 77 GHANHSLFWKGL-----KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWL 131
Query: 67 GLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L + +L V +TANQD PL+ +A + P++G+DVWEHAYYL+++N +PDY+K W
Sbjct: 132 VLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW 189
Query: 123 NVMNWKYAS 131
NV+NW A+
Sbjct: 190 NVVNWDEAA 198
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH NHS+FWK L + G L AI+ FGS++ + A+ GSGW WL
Sbjct: 77 GHANHSLFWKGL-----KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWL 131
Query: 67 GLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L + +L V +TANQD PL+ +A + P++G+DVWEHAYYL+++N +PDY+K W
Sbjct: 132 VLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW 189
Query: 123 NVMNWKYAS 131
NV+NW A+
Sbjct: 190 NVVNWDEAA 198
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 12/138 (8%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
AGHVNH+I+WKNL+P GG+ P L AI FGS + + A +QG GW
Sbjct: 71 AGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGCGWAA 127
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
LG DT +L++ + T P +VPLL +D+WEHA+YLQYKNVK D+ K WNV
Sbjct: 128 LGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNV 184
Query: 125 MNW-----KYASDVYQKE 137
+NW +YA+ Q +
Sbjct: 185 VNWADVQSRYAAATSQTK 202
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 7 GHVNHSIFWKNLAPVHVR-GGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH NHS+FW+ + + G P L AI++ FGS +A QK GSGW W
Sbjct: 78 GHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAW 137
Query: 66 LGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNI 121
L + +L V +TANQD PL+ +A V P+LG+DVWEHAYYL Y+N +PDYL
Sbjct: 138 LVVKD--GKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAF 195
Query: 122 WNVMNWKYASDVY 134
WNV+NW S Y
Sbjct: 196 WNVVNWDEVSKRY 208
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVR-GGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWV 64
GH NHS+FW+ + + G P L AI++ FGS +A QK GSGW
Sbjct: 76 GGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWA 135
Query: 65 WLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKN 120
WL + +L V +TANQD PL+ +A V P+LG+DVWEHAYYL Y+N +PDYL
Sbjct: 136 WLVVKD--GKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAA 193
Query: 121 IWNVMNWKYASDVY 134
WNV+NW S Y
Sbjct: 194 FWNVVNWDEVSKRY 207
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVR-GGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWV 64
GH NHS+FW+ + + G P L AI++ FGS +A QK GSGW
Sbjct: 96 GGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWA 155
Query: 65 WLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKN 120
WL + +L V +TANQD PL+ +A V P+LG+DVWEHAYYL Y+N +PDYL
Sbjct: 156 WLVVKD--GKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAA 213
Query: 121 IWNVMNWKYASDVY 134
WNV+NW S Y
Sbjct: 214 FWNVVNWDEVSKRY 227
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH NHS+FWK L + G L AI+ FGS++ + A+ GSGW WL
Sbjct: 77 GHANHSLFWKGL-----KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWL 131
Query: 67 GLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L + +L V +TANQD PL+ +A + P++G+DVWEHAY+L+++N +PDY+K W
Sbjct: 132 VLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYFLKFQNRRPDYIKEFW 189
Query: 123 NVMNWKYAS 131
NV+NW A+
Sbjct: 190 NVVNWDEAA 198
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
A H NHS FWK L+P GG+P +L AI FGS++ + G GSGW W
Sbjct: 103 AQHFNHSFFWKCLSP----GGKPMPKTLENAIAKQFGSVDDFMVSFQQAGVNNFGSGWTW 158
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L +D + K L++++T+N +T L P+ DVWEHAYY ++N + DYLK +W ++
Sbjct: 159 LCVDPQTKELLIDSTSNAGCPLTSG--LRPIFTADVWEHAYYKDFENRRADYLKELWQIV 216
Query: 126 NWKYASDVYQK 136
+W++ +Y++
Sbjct: 217 DWEFVCHMYER 227
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH NH +FW L+P GG P +L I++ FGS + ++ +A A GSGW W
Sbjct: 77 GGHANHKLFWTLLSP---NGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAW 133
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L ++ +L + +T NQD +++ T P+LG+DVWEHAYYL Y+N +PDY+ WNV+
Sbjct: 134 LVVNN--GKLEITSTPNQDSPLSEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVV 189
Query: 126 NWKYASDVYQKE 137
NW + +Y +
Sbjct: 190 NWDEVARLYSER 201
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH NHS+FWK L + G L AI+ FGS++ + A+ GSGW WL
Sbjct: 77 GHANHSLFWKGL-----KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWL 131
Query: 67 GLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L + +L V +TAN D PL+ +A + P++G+DVWEHAYYL+++N +PDY+K W
Sbjct: 132 VLKGD--KLAVVSTANHDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW 189
Query: 123 NVMNWKYAS 131
NV+NW A+
Sbjct: 190 NVVNWDEAA 198
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH+NH+IFW+ ++P GG P + I+ FGS E ++ + G GSGWVW
Sbjct: 112 GGHLNHTIFWQIMSP---DGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVW 168
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L + + + VV T +P++ + P++G DVWEHAYYL+Y+N +P+YL N WNV+
Sbjct: 169 LVRNPQGQLQVVSTPNQDNPIMEGS---YPIMGNDVWEHAYYLRYQNRRPEYLNNWWNVV 225
Query: 126 NW 127
NW
Sbjct: 226 NW 227
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH NHS+FWK L + G L AI+ FGS++ + A+ GSGW WL
Sbjct: 77 GHANHSLFWKGL-----KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWL 131
Query: 67 GLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
L + +L V +TAN D PL+ +A + P++G+DVWEHAYYL+++N +PDY+K W
Sbjct: 132 VLKGD--KLAVVSTANLDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW 189
Query: 123 NVMNWKYAS 131
NV+NW A+
Sbjct: 190 NVVNWDEAA 198
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 2 VICHAGH-VNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQG 60
+ +AG +NH++++ P +GG P LG AID FGS E ++ + G L G
Sbjct: 64 IFNNAGQTLNHNLYFTQFRPG--KGG-APKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFG 120
Query: 61 SGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN 120
SGWVWL D K L +E N V K L PLLG DVWEHAYYL Y+N + D+LK+
Sbjct: 121 SGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKD 177
Query: 121 IWNVMNWKYASDVY 134
+W++++W Y
Sbjct: 178 LWSIVDWDIVESRY 191
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 7/129 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH HS+FW+ ++P RGG P+ + ID +F + + L ++S + GSG+ W
Sbjct: 87 GGHYCHSLFWEVMSP---RGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGW 143
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L LD E L V +T NQD + + +PLL IDVWEHAYYL+Y+N +P+++ N W+ +
Sbjct: 144 LVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTV 199
Query: 126 NWKYASDVY 134
NW ++ Y
Sbjct: 200 NWDRVNEKY 208
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 9 VNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGL 68
NH+ +W++++P GG P L AI FGS ++ + GSGW WL
Sbjct: 74 FNHNFYWESMSP---NGGGEPSGKLAEAIRASFGSFAKFKEEFTNAAVGHFGSGWAWLVQ 130
Query: 69 DTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 128
DT K+L V T + +T+A L P+L DVWEHAYY+ YKN +P Y++ WNV+NW
Sbjct: 131 DTTTKKLKVFQTHDAGCPLTEA-DLKPILTCDVWEHAYYIDYKNDRPAYVQTFWNVVNWD 189
Query: 129 YASDVYQK 136
+A + + +
Sbjct: 190 HAENQFTR 197
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 2 VICHAGH-VNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQG 60
+ +AG +NH++++ P +GG P LG AID FGS E ++ + G L G
Sbjct: 64 IFNNAGQTLNHNLYFTQFRPG--KGG-APKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFG 120
Query: 61 SGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN 120
SGWVWL D K L +E N V K L PLL DVWEHAYYL Y+N + D+LK+
Sbjct: 121 SGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLTFDVWEHAYYLTYQNRRADHLKD 177
Query: 121 IWNVMNWKYASDVY 134
+W++++W Y
Sbjct: 178 LWSIVDWDIVESRY 191
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
G NH F+ + P P SL AID FGS E Q+ + GSGW W
Sbjct: 80 GGAYNHKFFFDIMTPEKTI----PSESLKEAIDRDFGSFEKFKQEFQKSALDVFGSGWAW 135
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L + T+ +L + TT NQD V+K L P++G+DVWEHAYYL+Y+N + +Y+ N +NV+
Sbjct: 136 L-VATKDGKLSIMTTPNQDSPVSK--NLTPIIGLDVWEHAYYLKYQNRRNEYIDNWFNVV 192
Query: 126 NWKYASDVYQ 135
NW A + Y+
Sbjct: 193 NWNGALENYK 202
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
GH NHS+FWK ++P GG P + I+ +GS E ++ +A A GSGW W
Sbjct: 77 GGHANHSLFWKLMSP---NGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWAW 133
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L ++ + ++ T +PL+ P+LG+DVWEHAYYL+Y+N +PDY+ WNV+
Sbjct: 134 LVVNNG-EIEIMSTPIQDNPLMEGKK---PILGLDVWEHAYYLKYQNKRPDYISAFWNVV 189
Query: 126 NWKYASDVYQK 136
NW + Y +
Sbjct: 190 NWDEVAAQYSQ 200
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
G+V H FW N+ P GGEP L I+ FGS E ++ S + +GSGW
Sbjct: 76 GGYVLHLFFWGNMGPADECGGEPS-GKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAV 134
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L RL + + V P LL +DVWEHAYY+ Y+NV+PDY++ WN++
Sbjct: 135 LTYCQRTDRLFIMQVEKHN--VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWNIV 192
Query: 126 NWKYASDVYQ 135
NWK ++
Sbjct: 193 NWKEVEKRFE 202
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ F+ NLAP GG P + I FGS E + SA GSGWVWL D
Sbjct: 104 NHTFFFNNLAP---NGGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVWLIAD 160
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
+ K +V+ +P+ + PL+ IDVWEHAYY+ Y+N + Y+KN WN++NW +
Sbjct: 161 -DGKLKIVQGHDAGNPI---RESKTPLMNIDVWEHAYYIDYRNARAQYVKNYWNLVNWDF 216
Query: 130 ASD 132
+D
Sbjct: 217 VND 219
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
A H NH+ +++ + P G+ S A+ FGS+E G GSGW W
Sbjct: 113 AQHFNHTFYFRCITP----NGKAMPKSFESAVTAQFGSVEQFKDAFVQAGVNNFGSGWTW 168
Query: 66 LGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
L +D K +LV++ T+N +TK L P+L +DVWEHAYY ++N +PDYLK IW+V
Sbjct: 169 LCVDPSNKNQLVIDNTSNAGCPLTKG--LRPVLAVDVWEHAYYKDFENRRPDYLKEIWSV 226
Query: 125 MNWKYASDVYQK 136
++W++ + ++ +
Sbjct: 227 IDWEFVAKMHAQ 238
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 2 VICHAGHV-NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQG 60
V +A HV NH+ +W LAP GGEP + AI FGS + + G
Sbjct: 63 VFNNAAHVWNHTFYWNCLAPN--AGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFG 119
Query: 61 SGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN 120
SGW WL +++ K +V T+ PL T A PLL +DVWEHAYY+ Y+N +P YL++
Sbjct: 120 SGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEH 176
Query: 121 IWNVMNWKYAS 131
W ++NW++ +
Sbjct: 177 FWALVNWEFVA 187
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W +L+P GG P ++ AI+ +GS +A + ++ + GS W WL
Sbjct: 72 NHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKL 128
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
+ +V T+ PL T P+L +D+WEHAYY+ Y+NV+PDYLK W+++NW++
Sbjct: 129 ADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEF 186
Query: 130 AS 131
A+
Sbjct: 187 AN 188
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W L P S L A+ FGS+E ++ S A GSGW WL +
Sbjct: 76 NHTFYWNCLTPNKTEAS----SQLKAALIETFGSVENFKEQFSKAAIATFGSGWAWLVKN 131
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
TE K +V T+ PL PLL DVWEHAYY+ Y+N +P Y++ +W+++NW++
Sbjct: 132 TEGKLEIVTTSNAGCPLTENKK---PLLTFDVWEHAYYIDYRNARPKYVEALWDIVNWQF 188
Query: 130 ASDVY 134
S+ +
Sbjct: 189 VSEQF 193
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 2 VICHAGHV-NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQG 60
V +A V NH+ +W LAP GGEP + AI FGS + + G
Sbjct: 63 VFNNAAQVWNHTFYWNCLAPN--AGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFG 119
Query: 61 SGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN 120
SGW WL +++ K +V T+ PL T A PLL +DVWEHAYY+ Y+N +P YL++
Sbjct: 120 SGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEH 176
Query: 121 IWNVMNWKYAS 131
W ++NW++ +
Sbjct: 177 FWALVNWEFVA 187
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W LAP GGEP + AI FGS + + GSGW WL +
Sbjct: 72 NHTFYWNCLAPN--AGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKN 128
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
++ K +V T+ PL T A PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++
Sbjct: 129 SDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEF 185
Query: 130 AS 131
+
Sbjct: 186 VA 187
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 6 AGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVW 65
A H NH+ +W ++P GG P L AID FGSLE + GSGW W
Sbjct: 69 AQHWNHTFYWHCMSP---DGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAW 125
Query: 66 LGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 125
L D K V+ T ++P+ PL+ DVWEHAYY+ +N +P Y+ N W V+
Sbjct: 126 LVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVV 182
Query: 126 NWKYASDVYQKE 137
NW + ++ E
Sbjct: 183 NWDFVMKNFKSE 194
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NHS +W ++ P G PH + I FGS + S GSGW WL L+
Sbjct: 73 NHSFYWDSMGP---NCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWGWLVLN 129
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
K ++++T +P+ K T +P+L D+WEHAYY+ Y+N +P Y+K WN++NW +
Sbjct: 130 NNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRPSYVKAWWNLVNWNF 187
Query: 130 ASDVYQK 136
A++ +K
Sbjct: 188 ANENLKK 194
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W+++ P GG P + I+ FGS ++ + GSGW WL D
Sbjct: 74 NHTFYWESMXP---NGGGEPTGKVADEINASFGSFAKFKEEFTNVAVGHFGSGWAWLVKD 130
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 128
T +L V T + +T+ P L PLL DVWEHAYY+ YKN + Y++ WNV+NWK
Sbjct: 131 TNSGKLKVYQTHDAGCPLTE-PNLKPLLTCDVWEHAYYVDYKNDRAAYVQTFWNVVNWK 188
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W ++ P GGEP H + I FGS ++ S GSGW WL L+
Sbjct: 73 NHTFYWDSMGPD--CGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN 129
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
K ++++T +P+ K T +P+L D+WEHAYY+ Y+N + Y+K WN++NW +
Sbjct: 130 NNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNF 187
Query: 130 ASDVYQK 136
A++ +K
Sbjct: 188 ANENLKK 194
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W ++ P GGEP H + I FGS ++ S GSGW WL L+
Sbjct: 72 NHTFYWDSMGPD--CGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN 128
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
K ++++T +P+ K T +P+L D+WEHAYY+ Y+N + Y+K WN++NW +
Sbjct: 129 NNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNF 186
Query: 130 ASDVYQK 136
A++ +K
Sbjct: 187 ANENLKK 193
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 2 VICHAGHV-NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQG 60
+ +A V NH+ FW +L P GG P + I++ FGS + + A G
Sbjct: 69 IFNNAAQVWNHTFFWNSLKP---GGGGVPTGDVAARINSAFGSYDEFKAQFKNAAATQFG 125
Query: 61 SGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK 119
SGW WL L E L V TAN ++PLV VPLL IDVWEHAYYL Y+N +PD++
Sbjct: 126 SGWAWLVL--EAGTLKVTKTANAENPLVHGQ---VPLLTIDVWEHAYYLDYQNRRPDFID 180
Query: 120 NIWN-VMNWKYAS 131
N N ++NW + +
Sbjct: 181 NFLNQLVNWDFVA 193
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NHS +W ++ P G PH + I FGS + S GSGW WL L+
Sbjct: 81 NHSFYWDSMGP---NCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGWGWLALN 137
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
K ++++T +P+ K T +P+L DVWEHAYY+ Y+N + Y+K WN++NW +
Sbjct: 138 KNNKLVILQTHDAGNPI--KENTGIPILTCDVWEHAYYIDYRNDRLSYVKAWWNLVNWNF 195
Query: 130 ASD 132
A++
Sbjct: 196 ANE 198
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 5 HAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWV 64
+AGH+ H+IFW N+AP GG P + I+ FG E SA ++G GW
Sbjct: 73 YAGHIMHTIFWPNMAPPGKGGGTP-GGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWG 131
Query: 65 WLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
L D + L + + L+T LVP+L IDVWEHAYYLQYKN + Y++N WNV
Sbjct: 132 VLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNV 189
Query: 125 MNW 127
+NW
Sbjct: 190 VNW 192
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W L+P G P +L AI+ FGS + ++ + GSGW WL
Sbjct: 72 NHTFYWNCLSP---NAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 128
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
+ + T PL PLL DVWEHAYY+ Y+N++P Y++ WN++NW +
Sbjct: 129 ADGSLALASTIGAGCPLTIGD---TPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAF 185
Query: 130 ASDVYQ 135
++ ++
Sbjct: 186 VAEQFE 191
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH +W+++ P GG P L I+ FGS+E + G GSGWVWL D
Sbjct: 100 NHDFYWQSMKP---NGGGNPPEKLREMIEHSFGSVEGFNNAFTTSGLGQFGSGWVWLVYD 156
Query: 70 TEFKRLVVETTANQD-PLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNW 127
+ K L V +TAN D PL+T+ +PL +DVWEHAYYL Y N++ Y+ + +++NW
Sbjct: 157 EDAKALKVVSTANADSPLLTQGQ--LPLATMDVWEHAYYLDYLNLRKKYIDVFLEHLLNW 214
Query: 128 KY 129
+
Sbjct: 215 DF 216
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH +W L+P L A++ FGSLE + L GSGW W +
Sbjct: 72 NHDFYWDCLSP----KATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN 127
Query: 70 TEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 128
+ +++ +++T+ Q P+ K VPLL +DVWEHAYY+ +KN +P YL+ + +NW
Sbjct: 128 LDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWH 184
Query: 129 YASDVYQ 135
+ S Y+
Sbjct: 185 FVSQCYE 191
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W L+P G P +L AI+ FGS + ++ + GSGW WL +
Sbjct: 73 NHTFYWNCLSP---DAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWAWL-VK 128
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
+ + T PL + PLL DVWEHAYY+ Y+N++P Y++ WN++NW +
Sbjct: 129 ADGSLALCSTIGAGAPLTSGD---TPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAF 185
Query: 130 ASD 132
++
Sbjct: 186 VAE 188
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD 69
NH+ +W LAP G P ++ AID FGS E K + GS W WL +
Sbjct: 73 NHTFYWNCLAP---NAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWLVKN 129
Query: 70 TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 129
+ +V T+ PL + T PLL +D+WEHAYY+ ++NV+PDY+ W+++NW +
Sbjct: 130 ADGSLAIVNTSNAATPLTDEGVT--PLLTVDLWEHAYYIDFRNVRPDYMGAFWSLVNWSF 187
Query: 130 ASDVYQK 136
+ K
Sbjct: 188 VEENLAK 194
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 2 VICHAGHV-NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQG 60
V AG + NH+++W ++ P G P L I +G+++ + + + AL G
Sbjct: 143 VFNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLK-LIRARWGNVDEMKENFMRKATALFG 201
Query: 61 SGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN 120
SGW+WL DT +RL + T + +++ +PL DVWEHAYYL Y++ + YL
Sbjct: 202 SGWIWLVWDTRERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYYLDYQHDRAAYLTR 261
Query: 121 IWNVMNWKYA 130
W+++NW++A
Sbjct: 262 WWSLINWEFA 271
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH H+I+W N+AP G P +L ID +GS + Q S +L GSGW L
Sbjct: 80 GHKLHAIYWNNMAPAGKGG-GKPGGALADLIDKQYGSFDRFKQVFSESANSLPGSGWTVL 138
Query: 67 GLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMN 126
D E L + T N + L +L +D +EHAYYLQYKN + DYL WNV+N
Sbjct: 139 YYDNESGNLQIMTVENH--FMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVN 196
Query: 127 WKYASDVYQK 136
W A QK
Sbjct: 197 WDDAEKRLQK 206
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH+ HSIFW N+AP GG+P + I+ FGS E ++ S ++G GW L
Sbjct: 86 GHILHSIFWPNMAPPGKGGGKPG-GKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAIL 144
Query: 67 GLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMN 126
+ ++L++ + + A LL +DVWEHAYYLQYKN + Y+ N WNV+N
Sbjct: 145 VYEPLEEQLLILQIEKHN--LMHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVN 202
Query: 127 WKYASDVYQK 136
W QK
Sbjct: 203 WDDVERRLQK 212
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH H+++W+N+AP +GG P +L I+ +GS + Q + +L G+GW L
Sbjct: 80 GHKLHALYWENMAP-SGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVL 138
Query: 67 GLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMN 126
DTE L + T N + +L +D +EHAYYLQYKN + DY+ WNV+N
Sbjct: 139 YYDTESGNLQIMTFENH--FQNHIAEIPIILILDEFEHAYYLQYKNKRADYVNAWWNVVN 196
Query: 127 WKYASDVYQK 136
W A QK
Sbjct: 197 WDAAEKKLQK 206
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH H+++W+N+AP +GG P +L I+ +GS + Q + +L G+GW L
Sbjct: 80 GHKLHALYWENMAP-SGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVL 138
Query: 67 GLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMN 126
DTE L + T N + +L +D +EHAYYLQYKN + DY+ WNV+N
Sbjct: 139 YYDTESGNLQIMTFENH--FQNHIAEIPIILILDEFEHAYYLQYKNKRADYVNAWWNVVN 196
Query: 127 WKYASDVYQK 136
W A QK
Sbjct: 197 WDAAEKKLQK 206
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 7 GHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWL 66
GH+ HSIFW N AP G P + I+ FGS E ++ S ++G GW L
Sbjct: 86 GHILHSIFWPNXAPPGKGG-GKPGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAIL 144
Query: 67 GLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMN 126
+ ++L++ + + A LL +DVWEHAYYLQYKN + Y+ N WNV+N
Sbjct: 145 VYEPLEEQLLILQIEKHN--LXHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVN 202
Query: 127 WKYASDVYQK 136
W QK
Sbjct: 203 WDDVERRLQK 212
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 5 HAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWV 64
+ GH+ H+++W N+AP GG P + AI+ FGS + + ++G GW
Sbjct: 86 YGGHILHTLYWLNMAPKGKGGGTPGGAIGD-AINKFFGSFDKFKKLFGDAAKNVEGVGWA 144
Query: 65 WLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNV 124
L D L + + +VT L+PLL +DV+EHAYY+ Y+N + Y+ + W++
Sbjct: 145 ILAYDPVTGDLRILQVEKHNNVVT--TNLIPLLAVDVFEHAYYIDYRNDRAKYVDSWWDL 202
Query: 125 MNWKYASDVYQK 136
+NW YQK
Sbjct: 203 INWDDVEARYQK 214
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 5 HAGHVNHSIFWKNLAPVHVRGGE-PPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGW 63
+ G V H +++ L P GG+ P +L I+ G L+A ++ A AA+ GW
Sbjct: 75 YMGVVLHELYFGMLTP----GGKGEPSEALKKKIEEDIGGLDACTNELKA--AAMAFRGW 128
Query: 64 VWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN 123
LGLD RLVV + V L+PL+ ID +EHAYY+ YKN +P Y+ +
Sbjct: 129 AILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFK 186
Query: 124 VMNWKYASDVYQK 136
+NW ++ ++K
Sbjct: 187 NINWDVVNERFEK 199
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 10 NHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLG-- 67
NH FW+ + P L I+ FGS E + + A A GSGW WL
Sbjct: 94 NHDFFWECMKPGGGGKPSGELLEL---IERDFGSFEKFLDEFKAAAATQFGSGWAWLAYK 150
Query: 68 ---LDTEFKRLVVETTANQDPLVTKAPTLV---------PLLGIDVWEHAYYLQYKNVKP 115
LD E + +V K+P V PLL IDVWEHAYYL ++N +P
Sbjct: 151 ASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRP 210
Query: 116 DYL 118
DY+
Sbjct: 211 DYI 213
>pdb|4AE7|A Chain A, Crystal Structure Of Human Them5
Length = 220
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 40 HFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLV 76
H GSL A++ + ++ A L G G L L+ FK L+
Sbjct: 131 HGGSLAAMMDETFSKTAFLAGEGLFTLSLNIRFKNLI 167
>pdb|3R1M|A Chain A, Strucure Of Bifunctional Fructose 1,6-Bisphosphate
AldolasePHOSPHATASE (ALDOLASE FORM)
Length = 385
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 29 PHSSLGWAIDTHFGSLEALIQKMSAEGAALQG-SGWVWLGLDTEFKRLVVETTANQDPLV 87
PH GW +H+G L + Q+ A+ G + LG + + RLV T DP
Sbjct: 258 PHLVPGWMRGSHYGPLMPVSQR-DAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAF 316
Query: 88 TKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138
+ L ++ + H ++ ++ ++P ++ + + D ++KE
Sbjct: 317 DETRRLANIVADYMRRHGPFMPHR-LEPTEMEYTTLPLILEKLKDRFKKES 366
>pdb|1UMG|A Chain A, Crystal Strucure Of Fructose-1,6-Bisphosphatase
Length = 362
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 29 PHSSLGWAIDTHFGSLEALIQKMSAEGAALQG-SGWVWLGLDTEFKRLVVETTANQDPLV 87
PH GW +H+G L + Q+ A+ G + LG + + RLV T DP
Sbjct: 256 PHLVPGWMRGSHYGPLMPVSQR-DAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAF 314
Query: 88 TKAPTLVPLLGIDVWEHAYYLQYK 111
+ L ++ + H ++ ++
Sbjct: 315 DETRRLANIVADYMRRHGPFMPHR 338
>pdb|3SGI|A Chain A, Crystal Structure Of Dna Ligase A Brct Domain Deleted
Mutant Of Mycobacterium Tuberculosis
Length = 615
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 14 FWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSG 62
W+ L + +R P + A+ T FGSL+A+ + + AA++G G
Sbjct: 525 LWRVLVALSIRHVGPTAAR---ALATEFGSLDAIAAASTDQLAAVEGVG 570
>pdb|4DD8|A Chain A, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|B Chain B, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|C Chain C, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|D Chain D, Adam-8 Metalloproteinase Domain With Bound Batimastat
Length = 208
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 63 WVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW 122
+ LG + + V+E + D L K V L+G+++W +V PD +
Sbjct: 18 FQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRF---HVSPDPSVTLE 74
Query: 123 NVMNWK 128
N++ W+
Sbjct: 75 NLLTWQ 80
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 21 VHVRGGEPPHSSLGWAID--THFGSLEALIQ 49
+ V+ P HS L WA++ T+FG L + Q
Sbjct: 91 IFVQSHVPEHSQLSWALNCYTYFGELSRMTQ 121
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 68 LDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN 120
LD E +L+V+ + +QD + T V +L + + A L K + P + N
Sbjct: 96 LDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIAN 148
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 101 VWEHAYYLQYK----------NVKPDYLKNIWNVMNWKYASDVYQKEC 138
+WE+ YL YK NV PD L N+ N+ A V K C
Sbjct: 397 LWENIVYLDYKSLYPSIIITHNVSPDTL-NLEGCKNYDIAPQVGHKFC 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,683,444
Number of Sequences: 62578
Number of extensions: 183524
Number of successful extensions: 726
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 106
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)