Query 032529
Match_columns 139
No_of_seqs 137 out of 1068
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0605 SodA Superoxide dismut 100.0 6.6E-61 1.4E-65 373.5 13.7 133 1-138 70-202 (204)
2 PLN02471 superoxide dismutase 100.0 1.1E-59 2.3E-64 373.7 15.6 139 1-139 93-231 (231)
3 PRK10543 superoxide dismutase; 100.0 5.4E-59 1.2E-63 361.2 14.3 128 2-135 65-192 (193)
4 PTZ00078 Superoxide dismutase 100.0 1.9E-57 4.1E-62 352.5 14.6 132 2-138 60-191 (193)
5 PLN02184 superoxide dismutase 100.0 5.1E-57 1.1E-61 354.5 14.7 129 3-138 79-208 (212)
6 PRK10925 superoxide dismutase; 100.0 1E-56 2.2E-61 351.5 14.5 130 2-138 73-206 (206)
7 PLN02622 iron superoxide dismu 100.0 1.2E-56 2.6E-61 361.4 14.8 131 2-137 116-247 (261)
8 KOG0876 Manganese superoxide d 100.0 4.5E-56 9.7E-61 350.3 12.5 135 1-138 93-230 (234)
9 PLN02685 iron superoxide dismu 100.0 4E-55 8.7E-60 357.5 14.8 132 2-138 114-261 (299)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 2.7E-50 5.8E-55 285.3 12.0 105 28-134 2-106 (106)
11 PF13348 Y_phosphatase3C: Tyro 66.6 6.4 0.00014 24.8 2.5 19 32-50 33-51 (68)
12 PF12826 HHH_2: Helix-hairpin- 50.6 13 0.00028 23.5 1.9 33 30-62 12-44 (64)
13 PF08025 Antimicrobial_3: Spid 46.4 25 0.00053 20.0 2.3 25 31-55 7-31 (37)
14 PF05416 Peptidase_C37: Southa 37.3 22 0.00047 31.6 1.7 21 58-82 377-397 (535)
15 PF01666 DX: DX module; Inter 34.2 47 0.001 22.1 2.6 24 60-83 15-38 (76)
16 PF12776 Myb_DNA-bind_3: Myb/S 33.5 1.2E+02 0.0026 19.7 4.7 41 32-75 36-86 (96)
17 PF09418 DUF2009: Protein of u 32.4 68 0.0015 28.4 4.0 32 31-62 381-414 (458)
18 KOG0394 Ras-related GTPase [Ge 28.0 36 0.00079 26.9 1.5 20 37-56 93-112 (210)
19 cd08351 ChaP_like ChaP, an enz 25.7 1.7E+02 0.0036 19.6 4.4 37 44-80 71-121 (123)
20 PF13185 GAF_2: GAF domain; PD 25.7 1.2E+02 0.0027 20.3 3.8 35 44-80 4-40 (148)
21 PF09907 DUF2136: Uncharacteri 25.2 1.8E+02 0.004 19.1 4.3 41 34-78 11-51 (76)
22 PF03789 ELK: ELK domain ; In 24.9 54 0.0012 16.8 1.3 20 33-52 2-22 (22)
23 PF09249 tRNA_NucTransf2: tRNA 24.1 86 0.0019 22.6 2.7 23 29-51 25-47 (114)
24 cd01935 Ntn_CGH_like Choloylgl 23.3 3.3E+02 0.0072 20.6 7.2 55 27-81 96-157 (229)
25 PF02868 Peptidase_M4_C: Therm 23.0 70 0.0015 24.0 2.2 58 5-62 85-148 (164)
26 COG2331 Uncharacterized protei 22.7 31 0.00067 23.3 0.2 24 46-71 42-65 (82)
27 PF08887 GAD-like: GAD-like do 22.4 2.3E+02 0.0049 20.0 4.6 53 12-71 5-59 (109)
28 PF15217 TSC21: TSC21 family 21.5 21 0.00045 27.2 -0.9 23 97-119 12-35 (180)
29 PLN02447 1,4-alpha-glucan-bran 20.8 2.8E+02 0.0062 26.2 6.1 52 32-83 85-136 (758)
30 PF12872 OST-HTH: OST-HTH/LOTU 20.8 71 0.0015 19.9 1.6 23 44-66 3-26 (74)
No 1
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-61 Score=373.55 Aligned_cols=133 Identities=43% Similarity=0.862 Sum_probs=125.4
Q ss_pred CccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEee
Q 032529 1 MVICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 1 ~~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t 80 (139)
|+||+|||+||+|||++|+|. ++++.|+|+|+++|+++|||+|+||++|+++|.++|||||+|||+|+. ++|.|++|
T Consensus 70 ~~nn~~gh~NH~~fw~~l~p~--~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~-~kL~i~~t 146 (204)
T COG0605 70 LFNNAGGHWNHSLFWENLSPG--GGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPD-GKLEIVST 146 (204)
T ss_pred HHhcchhhhhHHHHHhhcCCC--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECCC-CcEEEEec
Confidence 478999999999999999995 366789999999999999999999999999999999999999999986 69999999
Q ss_pred CCCCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032529 81 ANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138 (139)
Q Consensus 81 ~n~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 138 (139)
+||+.+.+.+ .+|||||||||||||+||||+|++||++||++|||++|++||++++
T Consensus 147 ~n~~~p~~~~--~~PiL~lDvWEHAYYldY~N~R~~Yv~afwnvVNW~~V~~r~~~a~ 202 (204)
T COG0605 147 YNQDTPLMWG--SVPLLGLDVWEHAYYLDYGNRRPDYVEAFWNVVNWDEVEERFEAAK 202 (204)
T ss_pred cCCCCcccCC--CCceEEecchHHHHHHHhccCcHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998776666 7999999999999999999999999999999999999999999875
No 2
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=1.1e-59 Score=373.66 Aligned_cols=139 Identities=83% Similarity=1.434 Sum_probs=126.8
Q ss_pred CccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEee
Q 032529 1 MVICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 1 ~~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t 80 (139)
+.||+|||+||+|||++|+|.+.+++.+|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+++|.|++|
T Consensus 93 ~~~n~gg~~NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~~~~~L~i~~t 172 (231)
T PLN02471 93 IKFNGGGHVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDKELKKLVVETT 172 (231)
T ss_pred hhhHHHHHHhHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeCCCCeEEEEee
Confidence 36899999999999999999754444457899999999999999999999999999999999999999987799999999
Q ss_pred CCCCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhhcCCHHHHHHHHHhhCC
Q 032529 81 ANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 139 (139)
Q Consensus 81 ~n~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~~ 139 (139)
+||+|++..+...+|||||||||||||+||||+|++||++||++|||++|++||+++|.
T Consensus 173 ~n~d~~~~~~~~~~PiL~iDvWEHAYylDY~n~R~~Yi~~~w~~inW~~v~~r~~~~~~ 231 (231)
T PLN02471 173 ANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYEKECN 231 (231)
T ss_pred cCCCCCcccCCCCceEEEeechhhHhHHHhccCHHHHHHHHHHccCHHHHHHHHHhhcC
Confidence 99998754432258999999999999999999999999999999999999999999873
No 3
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=5.4e-59 Score=361.18 Aligned_cols=128 Identities=34% Similarity=0.726 Sum_probs=118.5
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeC
Q 032529 2 VICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~ 81 (139)
++|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||.|+ +|+|.|++|+
T Consensus 65 fnna~g~~NH~lfw~~L~p---~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-~~~L~I~~t~ 140 (193)
T PRK10543 65 FNNAAQVWNHTFYWNCLAP---NAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-DGKLAIVSTS 140 (193)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCCEEEEecc
Confidence 4677789999999999999 44557899999999999999999999999999999999999999997 5899999999
Q ss_pred CCCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhhcCCHHHHHHHHH
Q 032529 82 NQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 135 (139)
Q Consensus 82 n~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~ 135 (139)
||++++..+ .+|||||||||||||+||+|+|++||++||++|||++|++||+
T Consensus 141 n~~~p~~~~--~~PlL~lDvWEHAYyldY~n~r~~Yv~~~w~~inW~~v~~r~~ 192 (193)
T PRK10543 141 NAGTPLTTD--ATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLA 192 (193)
T ss_pred CCCCCcCCC--CEeEEEEecchhhhHHHhccCHHHHHHHHHhccCHHHHHHHhc
Confidence 998655555 7999999999999999999999999999999999999999995
No 4
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=1.9e-57 Score=352.52 Aligned_cols=132 Identities=33% Similarity=0.649 Sum_probs=119.9
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeC
Q 032529 2 VICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~ 81 (139)
++|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||.+. +|+|.|++|+
T Consensus 60 ~n~a~g~~NH~lfw~~L~p---~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~-~~~L~i~~t~ 135 (193)
T PTZ00078 60 FNNAAQIWNHNFYWLSMGP---NGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKN-DGKLEIVQTH 135 (193)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCcEEEEecc
Confidence 5678899999999999999 45567999999999999999999999999999999999999999864 6899999999
Q ss_pred CCCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032529 82 NQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138 (139)
Q Consensus 82 n~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 138 (139)
|++++...+ ..+|||||||||||||+||||+|++||++||++|||++|++||++++
T Consensus 136 n~~~p~~~~-~~~PlL~lDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 191 (193)
T PTZ00078 136 DAGNPIKDN-TGKPLLTCDIWEHAYYIDYRNDRASYVNSWWNKVNWDFANKNLKKLM 191 (193)
T ss_pred CCCCCccCC-CCceEEEeccchhhhHHHHccCHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 997543322 16899999999999999999999999999999999999999999875
No 5
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=5.1e-57 Score=354.54 Aligned_cols=129 Identities=34% Similarity=0.667 Sum_probs=117.9
Q ss_pred cchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeCC
Q 032529 3 ICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN 82 (139)
Q Consensus 3 fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~n 82 (139)
+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+ ++|.|++|+|
T Consensus 79 nnagg~~NH~~fw~~L~p---~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~--~~L~i~~t~n 153 (212)
T PLN02184 79 NNAAQAWNHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN--EKLKVVKTPN 153 (212)
T ss_pred HhHHHHHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEeecC
Confidence 457889999999999999 45557999999999999999999999999999999999999999995 7899999999
Q ss_pred CCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhh-cCCHHHHHHHHHhhC
Q 032529 83 QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKEC 138 (139)
Q Consensus 83 ~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~-~inW~~v~~r~~~~~ 138 (139)
++.++..| .+|||||||||||||+||||+|++||++||+ +|||++|++||.++.
T Consensus 154 ~~~P~~~~--~~PlL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~ 208 (212)
T PLN02184 154 AVNPLVLG--SFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAK 208 (212)
T ss_pred CCCCccCC--CeeEEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHh
Confidence 96444456 7999999999999999999999999999996 899999999998763
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=1e-56 Score=351.47 Aligned_cols=130 Identities=41% Similarity=0.791 Sum_probs=117.2
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeC
Q 032529 2 VICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~ 81 (139)
++|+|||+||+|||++|+| + +.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ ++|.|++|+
T Consensus 73 ~nna~g~~NH~~fw~~L~P---~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~--~~L~i~~t~ 145 (206)
T PRK10925 73 RNNAGGHANHSLFWKGLKK---G--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG--DKLAVVSTA 145 (206)
T ss_pred HHHHHHHHHHHHHHhccCC---C--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEeC--CEEEEEecc
Confidence 4788999999999999998 3 26889999999999999999999999999999999999999984 799999999
Q ss_pred CCCccccC----CCCCceEEEecccchhhHHhhccChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032529 82 NQDPLVTK----APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138 (139)
Q Consensus 82 n~~p~~~~----g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 138 (139)
||+.+++. |...+|||||||||||||+||||+|++||++||++|||++|++||+++.
T Consensus 146 N~~~p~~~~~~~~~~~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~~inW~~v~~r~~~~~ 206 (206)
T PRK10925 146 NQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK 206 (206)
T ss_pred CCCCCccccccccCCCceeEEEechHHHhHHHHccCHHHHHHHHHhccCHHHHHHHHHhcC
Confidence 99744332 1124899999999999999999999999999999999999999998763
No 7
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=1.2e-56 Score=361.39 Aligned_cols=131 Identities=35% Similarity=0.652 Sum_probs=120.9
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeC
Q 032529 2 VICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 2 ~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~ 81 (139)
.+|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+|+|.|++|+
T Consensus 116 fnna~g~~NH~~Fw~~L~P---~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~~~g~L~I~~t~ 192 (261)
T PLN02622 116 FNNAAQVWNHDFFWESMQP---GGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREERRLEVVKTS 192 (261)
T ss_pred HHHHHhHHHHHHHHHccCC---CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEecC
Confidence 4568899999999999999 4555788999999999999999999999999999999999999999988999999999
Q ss_pred CCCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhh-cCCHHHHHHHHHhh
Q 032529 82 NQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKE 137 (139)
Q Consensus 82 n~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~-~inW~~v~~r~~~~ 137 (139)
||+.+...| .+|||||||||||||+||+|+|++||++||+ +|||++|++||.++
T Consensus 193 N~~~Pl~~~--~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v~~R~~~~ 247 (261)
T PLN02622 193 NAINPLVWD--DIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARA 247 (261)
T ss_pred CCCCCccCC--CEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHHHHHHHHh
Confidence 997544456 6999999999999999999999999999999 69999999999876
No 8
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-56 Score=350.29 Aligned_cols=135 Identities=53% Similarity=0.976 Sum_probs=123.3
Q ss_pred CccchHHHH-hHHHHhhccCCCCCCCCCCCchh-HHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEE
Q 032529 1 MVICHAGHV-NHSIFWKNLAPVHVRGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVE 78 (139)
Q Consensus 1 ~~fn~~g~~-NH~~fw~~L~p~~~~~~~~p~~~-L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~ 78 (139)
..||+|||+ ||+|||++|.| ++++.|.+. |+++|+++|||+|+|+++|++.+.++|||||+|||++++.++|.|+
T Consensus 93 ~~Fn~~~~~~Nh~fFw~~l~p---~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~ 169 (234)
T KOG0876|consen 93 PKFNGAGHIYNHSFFWENLAP---PGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFIL 169 (234)
T ss_pred hhcCCccccccchhhhhhccC---CCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEE
Confidence 379999996 99999999999 444556555 9999999999999999999999999999999999999987899999
Q ss_pred eeCCC-CccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032529 79 TTANQ-DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 138 (139)
Q Consensus 79 ~t~n~-~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 138 (139)
+|+|| ||+......++|||||||||||||+||+|+|++||++||++|||++|++||+++.
T Consensus 170 ~T~Na~~P~~~~t~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd~inW~~v~~R~~~~k 230 (234)
T KOG0876|consen 170 TTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWDVINWKVVSERFEAAK 230 (234)
T ss_pred ecCCCCCCeeccCCCccceEEEecchhHhHHHhccchHHHHHHHHHHhcHHHHHHHHHHhh
Confidence 99999 8987543348999999999999999999999999999999999999999999653
No 9
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=4e-55 Score=357.49 Aligned_cols=132 Identities=36% Similarity=0.693 Sum_probs=119.5
Q ss_pred ccchHHHHhHHHHhhccCCCCCCCCCCCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeC-----------
Q 032529 2 VICHAGHVNHSIFWKNLAPVHVRGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDT----------- 70 (139)
Q Consensus 2 ~fn~~g~~NH~~fw~~L~p~~~~~~~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~----------- 70 (139)
++|+|||+||+|||++|+| ++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+++
T Consensus 114 fNnaggh~NH~fFWe~L~P---~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np 190 (299)
T PLN02685 114 FNNAAQAWNHEFFWESMKP---GGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNP 190 (299)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccc
Confidence 3456789999999999999 45567999999999999999999999999999999999999999975
Q ss_pred ----CCCeeEEEeeCCCCccccCCCCCceEEEecccchhhHHhhccChHHHHHHHhh-cCCHHHHHHHHHhhC
Q 032529 71 ----EFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKEC 138 (139)
Q Consensus 71 ----~~~~L~i~~t~n~~p~~~~g~~~~PlL~iDvWEHAYyldY~n~r~~Yi~~~w~-~inW~~v~~r~~~~~ 138 (139)
.+++|.|++++||+.+...| .+|||||||||||||+||||+|++||++||+ +|||++|++||.++.
T Consensus 191 ~~~~~~~~L~i~~t~n~d~pl~~~--~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~vINW~~V~~R~~~a~ 261 (299)
T PLN02685 191 CPSEEDKKLVVVKSPNAVNPLVWD--YSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAK 261 (299)
T ss_pred cccccCCceeEEeccCCCCCccCC--CEeEEEEecchhhhHHHhccChHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 35789999999997554456 7999999999999999999999999999998 799999999998763
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=2.7e-50 Score=285.31 Aligned_cols=105 Identities=42% Similarity=0.835 Sum_probs=99.1
Q ss_pred CCchhHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeCCCCccccCCCCCceEEEecccchhhH
Q 032529 28 PPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 107 (139)
Q Consensus 28 ~p~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~n~~p~~~~g~~~~PlL~iDvWEHAYy 107 (139)
.|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+.+++|.|++++|++++...+ .+|||||||||||||
T Consensus 2 ~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~~~p~~~~--~~Pll~iD~weHaY~ 79 (106)
T PF02777_consen 2 KPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDPSDGKLSIISTPNHDTPIIWG--LIPLLCIDVWEHAYY 79 (106)
T ss_dssp S-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTTEEEEEEEETTTBGGGGT--EEEEEEEE-SGGGTH
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeeccccceeeeeeecccccccchh--hccchhhhhhHHHHH
Confidence 689999999999999999999999999999999999999999889999999999998665566 899999999999999
Q ss_pred HhhccChHHHHHHHhhcCCHHHHHHHH
Q 032529 108 LQYKNVKPDYLKNIWNVMNWKYASDVY 134 (139)
Q Consensus 108 ldY~n~r~~Yi~~~w~~inW~~v~~r~ 134 (139)
+||+++|++||++||++|||++|++||
T Consensus 80 ~dy~~~r~~Yv~~~~~~inW~~v~~r~ 106 (106)
T PF02777_consen 80 LDYGNKRADYVEAFWNVINWEVVEKRY 106 (106)
T ss_dssp HHHTTHHHHHHHHHGGGBBHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHcCHHHHHhhC
Confidence 999999999999999999999999998
No 11
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=66.58 E-value=6.4 Score=24.81 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.9
Q ss_pred hHHHHHHhhcCCHHHHHHH
Q 032529 32 SLGWAIDTHFGSLEALIQK 50 (139)
Q Consensus 32 ~L~~~I~~~FGS~~~fk~~ 50 (139)
...+.|++.|||+++|.++
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4678899999999999844
No 12
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=50.64 E-value=13 Score=23.47 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=21.5
Q ss_pred chhHHHHHHhhcCCHHHHHHHHHHhhhcCccCc
Q 032529 30 HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSG 62 (139)
Q Consensus 30 ~~~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsG 62 (139)
...-++.|.+.|||+|++++.=.+.-..+-|-|
T Consensus 12 G~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 12 GEKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp -HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred cHHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 456888999999999999876555545554544
No 13
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=46.44 E-value=25 Score=20.01 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.4
Q ss_pred hhHHHHHHhhcCCHHHHHHHHHHhh
Q 032529 31 SSLGWAIDTHFGSLEALIQKMSAEG 55 (139)
Q Consensus 31 ~~L~~~I~~~FGS~~~fk~~f~~~a 55 (139)
+.++..|.+-|-.+...+++|+++.
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~as 31 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEAS 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 5788999999999999999999876
No 14
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=37.34 E-value=22 Score=31.55 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.3
Q ss_pred CccCceEEEEEeCCCCeeEEEeeCC
Q 032529 58 LQGSGWVWLGLDTEFKRLVVETTAN 82 (139)
Q Consensus 58 ~~GsGW~wLv~~~~~~~L~i~~t~n 82 (139)
-|||||.+-|- ..|.|.+|+-
T Consensus 377 ~fGsGWGfWVS----~~lfITttHV 397 (535)
T PF05416_consen 377 KFGSGWGFWVS----PTLFITTTHV 397 (535)
T ss_dssp EETTEEEEESS----SSEEEEEGGG
T ss_pred ecCCceeeeec----ceEEEEeeee
Confidence 48999998773 4688888854
No 15
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=34.16 E-value=47 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred cCceEEEEEeCCCCeeEEEeeCCC
Q 032529 60 GSGWVWLGLDTEFKRLVVETTANQ 83 (139)
Q Consensus 60 GsGW~wLv~~~~~~~L~i~~t~n~ 83 (139)
=++|.|--.|+.+++|.|+...+-
T Consensus 15 p~~~~~~fCdp~t~ki~imG~~~~ 38 (76)
T PF01666_consen 15 PPNFSFAFCDPETGKIVIMGEENF 38 (76)
T ss_pred CCCcceEEECCcCCeEEEEeeecc
Confidence 468999999999999999987654
No 16
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=33.45 E-value=1.2e+02 Score=19.74 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=28.8
Q ss_pred hHHHHHHhhcCC----------HHHHHHHHHHhhhcCccCceEEEEEeCCCCee
Q 032529 32 SLGWAIDTHFGS----------LEALIQKMSAEGAALQGSGWVWLGLDTEFKRL 75 (139)
Q Consensus 32 ~L~~~I~~~FGS----------~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L 75 (139)
.+.+++++.+|. ++.+|+.+.....-.-.|| +.+|+.++.+
T Consensus 36 ~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~~sg---~gwd~~~~~i 86 (96)
T PF12776_consen 36 NIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRNHSG---FGWDPETGMI 86 (96)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHcCCC---ceEcCCCCeE
Confidence 577777777773 6777888877776566778 4558766544
No 17
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=32.41 E-value=68 Score=28.44 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=24.3
Q ss_pred hhHHHHHHhhcCCHHHHHHHHHHhh--hcCccCc
Q 032529 31 SSLGWAIDTHFGSLEALIQKMSAEG--AALQGSG 62 (139)
Q Consensus 31 ~~L~~~I~~~FGS~~~fk~~f~~~a--~~~~GsG 62 (139)
+.|.+-|+..|||++++|+....-. .+.-|||
T Consensus 381 ~~l~~yi~~~~g~~~~l~~~IL~DfFrh~FDGSG 414 (458)
T PF09418_consen 381 PHLRNYIESEFGSVEELKKTILQDFFRHAFDGSG 414 (458)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 4688999999999999998776654 1222777
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=28.02 E-value=36 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHhhcCCHHHHHHHHHHhhh
Q 032529 37 IDTHFGSLEALIQKMSAEGA 56 (139)
Q Consensus 37 I~~~FGS~~~fk~~f~~~a~ 56 (139)
+.++|+++++|+++|...|.
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred ChhhhccHHHHHHHHHHhcC
Confidence 34889999999999999996
No 19
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=25.70 E-value=1.7e+02 Score=19.61 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhcC--------------ccCceEEEEEeCCCCeeEEEee
Q 032529 44 LEALIQKMSAEGAAL--------------QGSGWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 44 ~~~fk~~f~~~a~~~--------------~GsGW~wLv~~~~~~~L~i~~t 80 (139)
++++.+.+.+....+ .+-|....+.||++..+.+++.
T Consensus 71 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 71 FDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 788888888887542 2346788889998777877765
No 20
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=25.69 E-value=1.2e+02 Score=20.28 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhcCccC--ceEEEEEeCCCCeeEEEee
Q 032529 44 LEALIQKMSAEGAALQGS--GWVWLGLDTEFKRLVVETT 80 (139)
Q Consensus 44 ~~~fk~~f~~~a~~~~Gs--GW~wLv~~~~~~~L~i~~t 80 (139)
++++.+...+.+..++|+ |+++|+ |+++ ++.....
T Consensus 4 ~~ell~~~~~~~~~~~~~~~~~i~l~-d~~~-~~~~~~~ 40 (148)
T PF13185_consen 4 LEELLQQILDALLELTGADAGAIYLY-DPDG-QLLPVAA 40 (148)
T ss_dssp HHHHHHHHHHHHHHHHS-SEEEEEEE-ETTS-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEE-ECCC-cEEEEEE
Confidence 455555555555555544 666677 8764 4444433
No 21
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=25.19 E-value=1.8e+02 Score=19.15 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=27.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEE
Q 032529 34 GWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVE 78 (139)
Q Consensus 34 ~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~ 78 (139)
...-.++|.+++++|+.|..+- ..|.+|+ |.|=.+.+.+++
T Consensus 11 ~~~~~a~w~~~~elk~~f~~ad--~v~~~~~--vFnI~GN~yRlI 51 (76)
T PF09907_consen 11 REVKKADWKNPAELKQQFPSAD--IVKNNRV--VFNIGGNKYRLI 51 (76)
T ss_pred HHHHHccCCCHHHHHHHCcchh--hhcCCEE--EEEcCCCcEEEE
Confidence 3445567999999999995543 5667866 555444454443
No 22
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=24.87 E-value=54 Score=16.84 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHHHhhcC-CHHHHHHHHH
Q 032529 33 LGWAIDTHFG-SLEALIQKMS 52 (139)
Q Consensus 33 L~~~I~~~FG-S~~~fk~~f~ 52 (139)
|+..+-+.|| .+..+|++|.
T Consensus 2 LK~~LlrkY~g~i~~Lr~Ef~ 22 (22)
T PF03789_consen 2 LKHQLLRKYSGYISSLRQEFS 22 (22)
T ss_pred HHHHHHHHHhHhHHHHHHHhC
Confidence 5666777775 4788888873
No 23
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=24.14 E-value=86 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.7
Q ss_pred CchhHHHHHHhhcCCHHHHHHHH
Q 032529 29 PHSSLGWAIDTHFGSLEALIQKM 51 (139)
Q Consensus 29 p~~~L~~~I~~~FGS~~~fk~~f 51 (139)
-+|.|.+.+--.||||+++.+..
T Consensus 25 FSGYL~ELLii~yGsF~~~l~~a 47 (114)
T PF09249_consen 25 FSGYLCELLIIHYGSFENVLEAA 47 (114)
T ss_dssp B-HHHHHHHHHHHSSHHHHHHHH
T ss_pred chHHHHHHHHHHHCCHHHHHHHH
Confidence 47899999999999999887543
No 24
>cd01935 Ntn_CGH_like Choloylglycine hydrolase (CGH)_like. This family of choloylglycine hydrolase-like proteins includes conjugated bile acid hydrolase (CBAH), penicillin V acylase (PVA), acid ceramidase (AC), and N-acylethanolamine-hydrolyzing acid amidase (NAAA) which cleave non-peptide carbon-nitrogen bonds in bile salt constituents. These enzymes have an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which they belong. This nucleophilic cysteine is exposed by post-translational prossessing of the precursor protein.
Probab=23.26 E-value=3.3e+02 Score=20.56 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=38.6
Q ss_pred CCCchhHHHHHHhhcCCHHHHHHHHHHhhh-------cCccCceEEEEEeCCCCeeEEEeeC
Q 032529 27 EPPHSSLGWAIDTHFGSLEALIQKMSAEGA-------ALQGSGWVWLGLDTEFKRLVVETTA 81 (139)
Q Consensus 27 ~~p~~~L~~~I~~~FGS~~~fk~~f~~~a~-------~~~GsGW~wLv~~~~~~~L~i~~t~ 81 (139)
..|...+...|-+.+.++|+-++.+.+... .-..+..=|++.|+.+..+.|..++
T Consensus 96 ~~~~~~~~r~vL~~~~tv~ea~~~l~~~~~~~~~~~~~~~~~~~h~~i~D~~G~~~viE~~~ 157 (229)
T cd01935 96 GLPAFELIRWVLENCDSVEEVKEALKKIPIVDFPIPLGGPAAPLHYILSDKSGDSAVIEPID 157 (229)
T ss_pred ccCHHHHHHHHHHHcCCHHHHHHHHHhCcccccccCCCCCCcCEEEEEEcCCCCEEEEEEEC
Confidence 345667888888999999999999998764 1115678899999863334443433
No 25
>PF02868 Peptidase_M4_C: Thermolysin metallopeptidase, alpha-helical domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR001570 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in the C-terminal of the peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1U4G_A 1EZM_A 3DBK_A 1LND_E 3T2I_E 3FOR_A 3FGD_A ....
Probab=22.99 E-value=70 Score=24.03 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred hHHHHhHHHHhhccCCC-CCCC-CCC-CchhHHHHHHhhcC---CHHHHHHHHHHhhhcCccCc
Q 032529 5 HAGHVNHSIFWKNLAPV-HVRG-GEP-PHSSLGWAIDTHFG---SLEALIQKMSAEGAALQGSG 62 (139)
Q Consensus 5 ~~g~~NH~~fw~~L~p~-~~~~-~~~-p~~~L~~~I~~~FG---S~~~fk~~f~~~a~~~~GsG 62 (139)
++|..||.||.-.-... ...+ +.+ .......+....+. +|..++....++|..++|.+
T Consensus 85 nSGI~N~aFYlla~~~~~~~~g~g~~ka~~I~y~A~~~~l~~~s~F~~~~~~~i~aA~~l~g~~ 148 (164)
T PF02868_consen 85 NSGIPNKAFYLLATGNGYTVGGIGWEKAAKIWYRALTNYLTPNSTFSDARRATIQAAKDLYGAN 148 (164)
T ss_dssp HTHHHHHHHHHHHHCTTEEECTCTHHHHHHHHHHHHHHTS-TT-BHHHHHHHHHHHHHHHC-TT
T ss_pred cccHHHHHHHHHHhccCcccCCccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 56889999887444300 0001 101 11234555555454 49999999999999988853
No 26
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.70 E-value=31 Score=23.34 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhcCccCceEEEEEeCC
Q 032529 46 ALIQKMSAEGAALQGSGWVWLGLDTE 71 (139)
Q Consensus 46 ~fk~~f~~~a~~~~GsGW~wLv~~~~ 71 (139)
.||+.|.+.+...-|||| -+-|.+
T Consensus 42 ~~kk~l~~vgi~fKGSGf--YvtDsR 65 (82)
T COG2331 42 RLKKLLNAVGIVFKGSGF--YVTDSR 65 (82)
T ss_pred HHHHhhccceEEEecceE--EEeccc
Confidence 789999999987669995 466654
No 27
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=22.39 E-value=2.3e+02 Score=19.98 Aligned_cols=53 Identities=25% Similarity=0.453 Sum_probs=37.1
Q ss_pred HHHhhccCCCCCCCCCCCchhHHHHHHhhc-C-CHHHHHHHHHHhhhcCccCceEEEEEeCC
Q 032529 12 SIFWKNLAPVHVRGGEPPHSSLGWAIDTHF-G-SLEALIQKMSAEGAALQGSGWVWLGLDTE 71 (139)
Q Consensus 12 ~~fw~~L~p~~~~~~~~p~~~L~~~I~~~F-G-S~~~fk~~f~~~a~~~~GsGW~wLv~~~~ 71 (139)
+.|.+.+.|+.. ....|... | +.| | -.+.+.+...+.+-+.++.|-.|+| ||+
T Consensus 5 e~fle~fg~~~~-~~~vp~~~----I-~kyk~~lP~~Ll~~W~~~G~g~~~dG~f~~v-nP~ 59 (109)
T PF08887_consen 5 EFFLEKFGPPID-RQEVPEES----I-EKYKGKLPDELLEYWKEYGFGGYGDGLFWLV-NPD 59 (109)
T ss_pred HHHHHHcCCCcC-CCcCCHHH----H-HHhcCCCcHHHHHHHHHcCCchhcCcEEEEE-CHH
Confidence 467888876432 22234333 3 334 3 3899999999999999999999987 664
No 28
>PF15217 TSC21: TSC21 family
Probab=21.50 E-value=21 Score=27.18 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEecccchhhHHhhc-cChHHHHH
Q 032529 97 LGIDVWEHAYYLQYK-NVKPDYLK 119 (139)
Q Consensus 97 L~iDvWEHAYyldY~-n~r~~Yi~ 119 (139)
+-+|++..+|+.||+ -+|.+|-+
T Consensus 12 VDldiYqSSyMvdykpygk~kysr 35 (180)
T PF15217_consen 12 VDLDIYQSSYMVDYKPYGKHKYSR 35 (180)
T ss_pred cchhhhhhhceeeccccccccccc
Confidence 468999999999999 78888753
No 29
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=20.80 E-value=2.8e+02 Score=26.18 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=39.7
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHhhhcCccCceEEEEEeCCCCeeEEEeeCCC
Q 032529 32 SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQ 83 (139)
Q Consensus 32 ~L~~~I~~~FGS~~~fk~~f~~~a~~~~GsGW~wLv~~~~~~~L~i~~t~n~ 83 (139)
..++.|++.-||+++|-+.-...+...-..|+.+-++-|...++.|+..-|.
T Consensus 85 ~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN~ 136 (758)
T PLN02447 85 RRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDFNN 136 (758)
T ss_pred HHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEecCC
Confidence 3567788888999999876666554444469999999998888998876553
No 30
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=20.75 E-value=71 Score=19.87 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhcCcc-CceEEE
Q 032529 44 LEALIQKMSAEGAALQG-SGWVWL 66 (139)
Q Consensus 44 ~~~fk~~f~~~a~~~~G-sGW~wL 66 (139)
.+.+++.+.+.-.+..+ .||++|
T Consensus 3 ~~~~~~~l~~ll~~~~~~~g~v~l 26 (74)
T PF12872_consen 3 LEELKKLLRELLESQKGEDGWVSL 26 (74)
T ss_dssp -HHHHHHHHHHHHHTCTTTSSEEH
T ss_pred HHHHHHHHHHHHHhCcCCCceEEH
Confidence 34445555444433334 355554
Done!