BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032531
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis
thaliana GN=EMB2731 PE=2 SV=1
Length = 208
Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 96/130 (73%), Positives = 112/130 (86%), Gaps = 1/130 (0%)
Query: 2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct: 7 GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66
Query: 62 NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
LEISLIMIEEHY AQGL IVGYFHANERFDD+EL +AKNIG+HI RYFPQ +LL+
Sbjct: 67 PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126
Query: 121 KSSKPYPRGK 130
K + +GK
Sbjct: 127 KKLEALSKGK 136
>sp|Q5U1W7|EMC9_RAT ER membrane protein complex subunit 9 OS=Rattus norvegicus GN=Emc9
PE=2 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY K+ LHA ++ AAVNG+LL + + + + D VPLFHSHL L
Sbjct: 1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
LE++L ++ + GL + GY+HAN DD +A I I +FP AVL++
Sbjct: 58 VMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPN-AVLIML 116
Query: 121 KSSK--PYPR 128
+ K +PR
Sbjct: 117 DNKKLVTWPR 126
>sp|Q9Y3B6|EMC9_HUMAN ER membrane protein complex subunit 9 OS=Homo sapiens GN=EMC9 PE=1
SV=3
Length = 208
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY+K+ LHA ++ AAVNG+ L +P++ + + D VPLFHSHL L
Sbjct: 1 MGEV--EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
LE++L ++ + GL + GY+HAN +D +A I I +FP AVL++
Sbjct: 58 VMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPD-AVLIML 116
Query: 121 KSSK--PYPR 128
+ K P PR
Sbjct: 117 DNQKLVPQPR 126
>sp|Q9DB76|EMC9_MOUSE ER membrane protein complex subunit 9 OS=Mus musculus GN=Emc9 PE=2
SV=1
Length = 206
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY K+ LHA ++ AAVNG+LL + + + + D VPLFHSHL L
Sbjct: 1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
LE++L ++ + GL + GY+HAN DD +A I I +FP+ AVL++
Sbjct: 58 VMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPR-AVLIML 116
Query: 121 KSSKPYPRGKT 131
+ K R +
Sbjct: 117 DNKKLVTRPRV 127
>sp|Q9W1Y1|EMC89_DROME ER membrane protein complex subunit 8/9 homolog OS=Drosophila
melanogaster GN=CG3501 PE=1 SV=1
Length = 203
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI 65
Y++S+ AY KL+ HA K+ AVNG+LL + + + VEI D++PLFH L + P E+
Sbjct: 4 YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKG-SQVEIVDAIPLFHQCLYVTPMAEV 62
Query: 66 SLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQ-CAVLLITK 121
+L++I+ H +GL I GY+ A E F D ++D A I + I F C V++ K
Sbjct: 63 ALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120
>sp|O70378|EMC8_MOUSE ER membrane protein complex subunit 8 OS=Mus musculus GN=Emc8 PE=1
SV=1
Length = 207
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQND------AVVEIADSVPLFHSHLGL 59
+L+ AY K+VLH K+ AVNG+L+ R P+ + + D +PLFH L L
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHGTLAL 64
Query: 60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
P LE++L +I+ I GY+ ANER D + +A+ + + I F A++++
Sbjct: 65 TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFGDAALIMV 124
Query: 120 TKS 122
+
Sbjct: 125 DNA 127
>sp|Q5FVL2|EMC8_RAT ER membrane protein complex subunit 8 OS=Rattus norvegicus GN=Emc8
PE=2 SV=1
Length = 207
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV------VEIADSVPLFHSHLGL 59
+L+ AY K+VLH K+ AVNG+L+ R P+ + D +PLFH L L
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHGTLAL 64
Query: 60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
P LE++L +I+ I GY+ ANER D + +A+ + + I F A++++
Sbjct: 65 TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDAALIMV 124
Query: 120 TKS 122
+
Sbjct: 125 DNA 127
>sp|Q55FM0|EMC89_DICDI ER membrane protein complex subunit 8/9 homolog OS=Dictyostelium
discoideum GN=DDB_G0268048 PE=3 SV=1
Length = 192
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 8 LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISL 67
++ A K LH+ KH ++VNG+LLG+ + + I D +PLFH+ LLP E+++
Sbjct: 7 ITTEALSKAHLHSFKHHASSVNGILLGKADKNS---ILITDIIPLFHTQ-TLLPMFEVAM 62
Query: 68 IMIEEHYSAQGLGIVGYFHANERF-DDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPY 126
I IE++ + +VGY+H+N+ ++LE + IAK I + + L+I+K
Sbjct: 63 IQIEKYCRDNNIDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNR 122
Query: 127 PRG 129
P G
Sbjct: 123 PSG 125
>sp|O43402|EMC8_HUMAN ER membrane protein complex subunit 8 OS=Homo sapiens GN=EMC8 PE=1
SV=1
Length = 210
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
+L+ AY K+VLH K+ AVNG+L+ + P+ + + D +PLFH
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64
Query: 57 LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
L L P LE++L +I+ I GY+ ANER D + +A+ + + I F A+
Sbjct: 65 LALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124
Query: 117 LLITKS 122
+++ +
Sbjct: 125 IMVDNT 130
>sp|Q32KL5|EMC8_BOVIN ER membrane protein complex subunit 8 OS=Bos taurus GN=EMC8 PE=2
SV=1
Length = 210
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
+L+ AY K+VLH K+ AV+G+L+ + P+ + + D +PLFH
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64
Query: 57 LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
L L P LE++L +I+ I GY+ ANER D + +A+ + + I F A+
Sbjct: 65 LALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124
Query: 117 LLITKS 122
+++ +
Sbjct: 125 IMVDNT 130
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 26 AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-ISLIMIEEHYSAQGLGIVGY 84
A V G+L GR S + D VVE+ + P GL ++ +S E +A+G ++G+
Sbjct: 598 AEVIGLLGGRYS-EADKVVEVCAAEPCNSLSTGLQCEMDPVSQTQASETLAARGYSVIGW 656
Query: 85 FHANERFDD----LELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPR 128
+H++ FD ++D+ AK YF + + I PY R
Sbjct: 657 YHSHPAFDPNPSIRDIDTQAK-----YQSYFSRGGAMFIGMIVSPYNR 699
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 10/141 (7%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ ++S A + L LHA A V G+L GR + ++++VVEI P GL +
Sbjct: 546 FQVKVSCEAMLVLDLHAHV-SMAEVIGLLGGRYT-ESESVVEICAVEPCNSLSTGLQCEM 603
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFDD----LELDSIAKNIGNHICRYFPQCAVLL 118
+ +S E +++G ++G++H++ FD ++D+ AK N+ R + ++
Sbjct: 604 DPVSQTQASEALASRGYSVIGWYHSHPAFDPNPSIRDIDTQAK-YQNYFSRGGAKFLGMI 662
Query: 119 ITKSSK--PYPRGKTGVLLCS 137
I+ ++ P+P+ + L+ S
Sbjct: 663 ISPYNRRNPHPQSQVACLIIS 683
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ +++ A + + LHA A V G+L GR S + D VVE+ + P GL +
Sbjct: 575 FQVKVASEALLIMDLHAHV-SMAEVIGLLGGRYS-EVDKVVEVCAAEPCNSLSTGLQCEM 632
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFDD----LELDSIAKNIGNHICRYFPQCAVLL 118
+ +S E + +G ++G++H++ FD ++D+ AK YF +
Sbjct: 633 DPVSQTQASETLAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAK-----YQSYFSRGGAKF 687
Query: 119 ITKSSKPYPR 128
I PY R
Sbjct: 688 IGMIVSPYNR 697
>sp|O04420|URIC_ARATH Uricase OS=Arabidopsis thaliana GN=At2g26230 PE=1 SV=2
Length = 309
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 84 YFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPR 128
Y A E D L ++ A IG H C ++PQ ++ KP+ R
Sbjct: 71 YVKAKECGDRLSVEEFAILIGKHFCSFYPQVFTAIVNIIEKPWER 115
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ +++ A + + LHA A V G+L GR S + D V+E+ + P GL +
Sbjct: 566 FQVKVAAEALLIMNLHAHV-SMAEVIGLLGGRYS-EADKVLEVCAAEPCNSLSTGLQCEM 623
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFDD----LELDSIAKNIGNHICRYFPQCAVLL 118
+ +S E + +G ++G++H++ FD ++D+ AK YF +
Sbjct: 624 DPVSQTQASETLALRGYSVIGWYHSHPAFDPNPSLRDIDTQAK-----YQSYFSRGGAKF 678
Query: 119 ITKSSKPYPR 128
I PY R
Sbjct: 679 IGMIVSPYNR 688
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 18 LHARKH--KTAAVNGVLL----GRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIE 71
L RK+ K A NG ++ G+ P D + I D + L + L + ++IE
Sbjct: 113 LEERKNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDL----DAGADYVIIE 168
Query: 72 EHYSAQGLGIVGYFHANERFDDLELDSIAKNIG-NHICRYFPQ 113
S +G+G+ F + + ELD +AKN+ N + PQ
Sbjct: 169 GRESGKGIGL---FDKEGKVKENELDVLAKNVDINKVIFEAPQ 208
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 32 LLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-ISLIMIEEHYSAQGLGIVGYFHANER 90
LLG + D V++I + P GL ++ +S E +GL +VG++H++
Sbjct: 541 LLGGTYEEEDKVLKICSAEPCNSLSTGLQCEMDPVSQTQASEVLGVKGLSVVGWYHSHPA 600
Query: 91 FD 92
FD
Sbjct: 601 FD 602
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEIS 66
++S A +K+V+HAR T V G++LG+V N +V A ++P+ + + +
Sbjct: 53 KISALALLKMVMHARSGGTLEVMGLMLGKVE-DNTMIVMDAFALPVEGTETRVNAQAQAY 111
Query: 67 LIMIEEHYSAQGLG----IVGYFHA 87
M +A+ +G VG++H+
Sbjct: 112 EYMTAYMEAAKEVGRMEHAVGWYHS 136
>sp|O19906|GLTB_CYACA Ferredoxin-dependent glutamate synthase OS=Cyanidium caldarium
GN=gltB PE=3 SV=1
Length = 1549
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 74 YSAQGLGIVGYFHANERF--DDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKT 131
Y A G + Y A ERF + S+ + +G+H C Y V+++ K+ + G T
Sbjct: 1399 YGATGGFLFAYGAAGERFAVRNSNAFSVLEGVGDHACEYMTGGRVVVLGKAGRNIAAGMT 1458
Query: 132 G 132
G
Sbjct: 1459 G 1459
>sp|Q9P370|BUD20_SCHPO Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bud20 PE=3 SV=1
Length = 124
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 88 NERFDDLELDSIAKNIGNHIC----RYFPQCAVLLITKSSKPYPR 128
+E+FD L +D +G H C RYF LL+ K K + R
Sbjct: 38 SEKFDKLPIDPDLPGLGQHYCIECARYFDSSQALLVHKKGKVHKR 82
>sp|Q6GIR7|53DR_STAAR Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0778 PE=3 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYD 85
>sp|P66841|53DR_STAAN Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain N315) GN=SA0680 PE=3 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYD 85
>sp|P66840|53DR_STAAM Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0725 PE=1 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYD 85
>sp|Q1XDB2|GLTB_PORYE Ferredoxin-dependent glutamate synthase OS=Porphyra yezoensis GN=gltB
PE=3 SV=1
Length = 1538
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 74 YSAQGLGIVGYFHANERF--DDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKT 131
Y A G + A ERF + +S+ + +G+H C Y ++++ K+ + G T
Sbjct: 1387 YGATGGYLFAQGQAGERFAVRNSLAESVVEGVGDHACEYMTGGVIVVLGKAGRNVGAGMT 1446
Query: 132 GVL 134
G L
Sbjct: 1447 GGL 1449
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-I 65
++ A + + +HA TA V G LLG V ++ +E+A + P G+ ++ +
Sbjct: 593 KIHATALVTIDMHAHI-STAEVIG-LLGGVFHRDPGALEVASAEPCNSLSTGMQCEMDPV 650
Query: 66 SLIMIEEHYSAQGLGIVGYFHANERF 91
S E S G +VG++H++ F
Sbjct: 651 SQTQASEALSQAGYSVVGWYHSHPTF 676
>sp|Q8NXN2|53DR_STAAW Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MW2) GN=MW0687 PE=3 SV=1
Length = 180
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYD 85
>sp|Q6GBA5|53DR_STAAS Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0690 PE=3 SV=1
Length = 180
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYD 85
>sp|Q5HHU8|53DR_STAAC Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain COL) GN=SACOL0785 PE=3 SV=1
Length = 180
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYD 85
>sp|P51375|GLTB_PORPU Ferredoxin-dependent glutamate synthase OS=Porphyra purpurea GN=gltB
PE=3 SV=1
Length = 1538
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 74 YSAQGLGIVGYFHANERF--DDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKT 131
Y A G + A ERF + S+ + +G+H C Y ++++ K+ + G T
Sbjct: 1387 YGATGGYLFAQGQAGERFAVRNSLAKSVVEGVGDHACEYMTGGTIVVLGKAGRNVGAGMT 1446
Query: 132 GVL 134
G L
Sbjct: 1447 GGL 1449
>sp|Q5V5N9|SYE_HALMA Glutamate--tRNA ligase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=gltX PE=3
SV=1
Length = 579
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 3 ELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVP 51
EL+ +++ A +L+A KH + A G ++G + +N E D +P
Sbjct: 4 ELRDRITEAAETNALLNAVKHDSEAQVGAIMGPLMGENPEFREYGDEIP 52
>sp|Q75E19|CSN5_ASHGO COP9 signalosome complex subunit 5 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RRI1
PE=3 SV=1
Length = 420
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 5 KYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADS--VPLFHSHLGLLPN 62
K LS A +K++ HA V G+LLG V D ++ + DS +P+ + +
Sbjct: 72 KAALSALACMKILRHAFDGGDMEVLGMLLGYV---QDEMIVVVDSYRLPVEGTETRVNAQ 128
Query: 63 LEISLIMIE--EHYSAQGLGIVGYFHANERFD------DLELDSIAKNIGNHICRYFPQC 114
+E ++ E +GL IVG++H++ + D E ++ +N + P
Sbjct: 129 MESYEYTVQYLETAVPEGLAIVGWYHSHPGYGCWLSGIDAETQTLNQNFQD------PYL 182
Query: 115 AVLLITKSSK 124
A+++ K SK
Sbjct: 183 AIVVDPKRSK 192
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 24 KTAAVNGVLLGRVSPQNDAV-VEIADSVPLFHSHLG 58
+T + NGVLLG S + DA+ +EI D LFH + G
Sbjct: 2930 RTTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNG 2965
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,449,946
Number of Sequences: 539616
Number of extensions: 1978862
Number of successful extensions: 3498
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 43
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)