Query 032531
Match_columns 139
No_of_seqs 108 out of 146
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o95_A 26S proteasome non-ATPa 99.8 3.8E-19 1.3E-23 137.0 10.6 110 6-123 10-129 (187)
2 4e0q_A COP9 signalosome comple 99.2 1.8E-10 6.3E-15 86.2 12.0 112 4-123 6-125 (141)
3 4b4t_V 26S proteasome regulato 99.1 5.2E-10 1.8E-14 92.9 11.6 112 6-123 27-145 (306)
4 2znr_A AMSH-like protease; met 98.6 2E-07 6.9E-12 71.9 9.9 111 6-123 11-125 (178)
5 3rzv_A STAM-binding protein; u 98.2 5.9E-06 2E-10 65.8 9.7 109 6-123 44-158 (211)
6 4b4t_U RPN8, 26S proteasome re 98.2 2.2E-05 7.5E-10 65.7 13.0 110 6-123 8-127 (338)
7 2kks_A Uncharacterized protein 98.2 2.2E-05 7.4E-10 57.9 10.4 104 6-121 2-110 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.1 1.5E-05 5.2E-10 59.1 9.4 104 6-120 1-111 (153)
9 1oi0_A AF2198, hypothetical pr 97.8 0.00019 6.6E-09 51.4 10.1 98 2-120 1-98 (124)
10 3bvp_A INT, TP901-1 integrase; 29.6 1.4E+02 0.0046 20.4 7.1 48 63-110 23-70 (138)
11 3ct6_A PTS-dependent dihydroxy 25.8 79 0.0027 22.3 4.0 45 71-121 23-67 (131)
12 2x0j_A Malate dehydrogenase; o 25.4 48 0.0016 26.6 3.0 23 99-121 97-119 (294)
13 3u95_A Glycoside hydrolase, fa 25.3 49 0.0017 28.3 3.2 24 98-121 137-160 (477)
14 1u8x_X Maltose-6'-phosphate gl 25.0 52 0.0018 28.2 3.3 24 98-121 149-172 (472)
15 1s6y_A 6-phospho-beta-glucosid 24.4 52 0.0018 27.9 3.2 24 98-121 130-153 (450)
16 2fz5_A Flavodoxin; alpha/beta 22.9 1.6E+02 0.0056 19.1 5.6 52 49-109 53-106 (137)
17 1obb_A Maltase, alpha-glucosid 21.8 62 0.0021 27.9 3.2 24 98-121 130-153 (480)
18 3fef_A Putative glucosidase LP 21.5 66 0.0023 27.5 3.3 24 98-121 124-147 (450)
19 2l4w_A Uncharacterized protein 20.1 41 0.0014 24.2 1.5 54 49-102 27-88 (120)
No 1
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.79 E-value=3.8e-19 Score=137.01 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=93.8
Q ss_pred eEEeHHHHHHHHhhhhcCC----CCeeeEEEeeecCCCCCceeEEEeceeccccccCchh---HH--HHHHHHHHHHhhh
Q 032531 6 YELSQNAYIKLVLHARKHK----TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP---NL--EISLIMIEEHYSA 76 (139)
Q Consensus 6 v~is~~AY~K~iLHAaKyP----~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP---ml--EvAL~~id~~~~~ 76 (139)
|+|++.++.||+.|+.|+| ...|+|+|||+..+ +.+.|+||+||.|......| ++ |....++|.+.+.
T Consensus 10 V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~---~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 10 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQK---KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESS---SEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred EEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcC---CEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 8999999999999999984 68999999998764 48999999999998766554 44 8888999998876
Q ss_pred C-CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531 77 Q-GLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS 123 (139)
Q Consensus 77 ~-~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k 123 (139)
+ ++.||||||+++..++. ...|.+.+++.++++++|++|+.+
T Consensus 87 ~~~~~iVGWY~s~~~~s~~-----d~~i~~~~~~~~~~~v~Livd~~~ 129 (187)
T 2o95_A 87 NARERIVGWYHTGPKLHKN-----DIAINELMKRYCPNSVLVIIDVKP 129 (187)
T ss_dssp SSSCEEEEEEECCSSCCTT-----HHHHHHHHTTTCTTCEEEEECCCT
T ss_pred CCCCCEEEEEcCCCcCCcc-----cHHHHHHHHhcCCCCEEEEECCCC
Confidence 6 89999999999877543 234788888999999999999977
No 2
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.21 E-value=1.8e-10 Score=86.17 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=83.8
Q ss_pred ceeEEeHHHHHHHHhhhhcC-----CCCeeeEEEeeecCCCCCceeEEEeceeccccccC--chhHHHHHHHHHHHHhhh
Q 032531 4 LKYELSQNAYIKLVLHARKH-----KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG--LLPNLEISLIMIEEHYSA 76 (139)
Q Consensus 4 M~v~is~~AY~K~iLHAaKy-----P~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~--LsPmlEvAL~~id~~~~~ 76 (139)
..|.|++.+..||+=|+.+- ....|.|+|||...+ ..++|+||.|+-|.... ...-.|-...+.+.+-+-
T Consensus 6 ~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~---~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v 82 (141)
T 4e0q_A 6 VTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKG---RNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQV 82 (141)
T ss_dssp EEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEET---TEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC---CEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHh
Confidence 34899999999999999874 235799999998754 48999999999986321 233346666777776654
Q ss_pred -CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531 77 -QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS 123 (139)
Q Consensus 77 -~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k 123 (139)
.+..|||||+.... +++....|-+.+.+.++++++|++|..+
T Consensus 83 ~~~e~iVGWY~s~~~-----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~ 125 (141)
T 4e0q_A 83 FSDLDFIGWYTTGDN-----PTADDIKIQRQIAAINECPIMLQLNPLS 125 (141)
T ss_dssp STTCEEEEEEEEEC------------CHHHHHHHTTCCCEEEEESCSC
T ss_pred CCCccEEEEEeCCCC-----CCcchHHHHHHHHHHCCCCEEEEECCCc
Confidence 56999999998653 4444457888888999999999999887
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.2e-10 Score=92.90 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=85.1
Q ss_pred eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccC-----chhHHHHHHHHHHHHhhh--CC
Q 032531 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG-----LLPNLEISLIMIEEHYSA--QG 78 (139)
Q Consensus 6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~-----LsPmlEvAL~~id~~~~~--~~ 78 (139)
|.||+.|..||+.||-.-....|.|+|||+..++ ..+.|+||+|+=|.... ..+..+. .+ ....++ .+
T Consensus 27 V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~--~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~--~m-~~~~~~v~~~ 101 (306)
T 4b4t_V 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDD--YTVNVVDVFAMPQSGTGVSVEAVDDVFQA--KM-MDMLKQTGRD 101 (306)
T ss_dssp EEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETT--TEEEEEEEECCCCEESSSCEECCCHHHHH--HH-HHHHHHHSCC
T ss_pred EEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCC--eEEEEEEEEeCCcCCCCCchhcCCHHHHH--HH-HHHHHHhCCC
Confidence 8999999999999998877789999999975444 47999999999665332 2332221 12 223333 45
Q ss_pred ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531 79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS 123 (139)
Q Consensus 79 l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k 123 (139)
..+|||||....+. .-|+.+-.......+...+.++.|++|..+
T Consensus 102 ~~vVGWYhShP~~~-~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~ 145 (306)
T 4b4t_V 102 QMVVGWYHSHPGFG-CWLSSVDVNTQKSFEQLNSRAVAVVVDPIQ 145 (306)
T ss_dssp CCCSEEEEECCSSS-CCCCHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred cceeeEEecCCCCC-CcCCHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 88999999987666 557888777777778889999999999877
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.63 E-value=2e-07 Score=71.90 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=81.5
Q ss_pred eEEeHHHHHHHHhhhhc-CCC-CeeeEEEeeecCCCCCceeEEEeceecccccc--CchhHHHHHHHHHHHHhhhCCceE
Q 032531 6 YELSQNAYIKLVLHARK-HKT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHL--GLLPNLEISLIMIEEHYSAQGLGI 81 (139)
Q Consensus 6 v~is~~AY~K~iLHAaK-yP~-~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~--~LsPmlEvAL~~id~~~~~~~l~I 81 (139)
|.|+...+.||+-||-. +|. ..|.|+|+|+..++ ...|++++|+=-... ....+-+. .+ -.+....|+.+
T Consensus 11 v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~---~~~V~~v~~~pq~~t~~~~~~~~~~--e~-~~~~~~~~l~~ 84 (178)
T 2znr_A 11 VVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN---EFTITHVIVPKQSAGPDYCDMENVE--EL-FNVQDQHDLLT 84 (178)
T ss_dssp EEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT---EEEEEEEEECCEEEETTEEEECCHH--HH-HHHHHHHTCEE
T ss_pred EEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC---CeEEEEEEeCCcCCCCCeeccCCHH--HH-HHHHHhCCCEE
Confidence 89999999999999986 575 78999999987543 678899987632111 11000011 11 12356789999
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531 82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS 123 (139)
Q Consensus 82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k 123 (139)
|||||...... ..||+.-.....+.+...+.++.|++|-.+
T Consensus 85 vGwyHSHP~~~-~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~ 125 (178)
T 2znr_A 85 LGWIHTHPTQT-AFLSSVDLHTHCSYQLMLPEAIAIVCSPKH 125 (178)
T ss_dssp EEEEEECSSSC-SCCCHHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred EEEEeCCCCCC-CCCCHHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence 99999976544 678988888888888889999999998765
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.25 E-value=5.9e-06 Score=65.76 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=80.7
Q ss_pred eEEeHHHHHHHHhhhhcC-CC-CeeeEEEeeecCCCCCceeEEEeceeccccccC----chhHHHHHHHHHHHHhhhCCc
Q 032531 6 YELSQNAYIKLVLHARKH-KT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG----LLPNLEISLIMIEEHYSAQGL 79 (139)
Q Consensus 6 v~is~~AY~K~iLHAaKy-P~-~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~----LsPmlEvAL~~id~~~~~~~l 79 (139)
|.|+...+-|++-||-.. |. ..|.|+|+|+..+ +...|++++.+.-.... +....| +. .|....++
T Consensus 44 v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~---~~~~I~~v~~ppq~gt~~~v~~~~~~e----~~-~~~~~~~l 115 (211)
T 3rzv_A 44 VVVPGRLCPQFLQLASANTARGVATCGILCGKLMR---NEFTITHVLIPKQSAGSDYCNTENEEE----LF-LIQDQQGL 115 (211)
T ss_dssp EEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET---TEEEEEEEEECCEEECSSCEEECCHHH----HH-HHHHHHTC
T ss_pred EEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC---CCEEEEEEEeCCccCCCCceeccChHH----HH-HHHhhCCC
Confidence 889999999999999884 53 7889999998754 36888998854322111 111111 11 23345899
Q ss_pred eEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531 80 GIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS 123 (139)
Q Consensus 80 ~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k 123 (139)
.+|||||...... ..|++.-.....+++...+..+.|++|-.+
T Consensus 116 ~~vGWyHSHP~~~-~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~ 158 (211)
T 3rzv_A 116 ITLGWIHTHPTQT-AFLSSVDLHTHCSYQMMLPESVAIVCSPKF 158 (211)
T ss_dssp EEEEEEEECTTSC-SCCCHHHHHHHHHHHHHCTTCEEEEEETTT
T ss_pred EEEEEEeCCCCCC-CCCCHHHHHHHHHHHhcCCCeEEEEEcCCC
Confidence 9999999865333 679999999999999999999999998765
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.2e-05 Score=65.65 Aligned_cols=110 Identities=14% Similarity=0.213 Sum_probs=76.8
Q ss_pred eEEeHHHHHHHHhhhhc-C--CCCeeeEEEeeecCCCCCceeEEEeceeccccccCchh-----HHHHHHHHHHHHhh-h
Q 032531 6 YELSQNAYIKLVLHARK-H--KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP-----NLEISLIMIEEHYS-A 76 (139)
Q Consensus 6 v~is~~AY~K~iLHAaK-y--P~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP-----mlEvAL~~id~~~~-~ 76 (139)
|.|.+.+..+|+=|..+ . -...|.|.|||...+ ..|+|+||.|+-|....-.+ =.+-.-.+.+.+-+ .
T Consensus 8 V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~---~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 8 VTIAPLVLLSALDHYERTQTKENKRCVGVILGDANS---STIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp EEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECS---SEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred EEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcC---CEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 89999999999999765 2 235799999998654 48999999999875432111 01223333343333 2
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCC-CceEEEEeCCC
Q 032531 77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFP-QCAVLLITKSS 123 (139)
Q Consensus 77 ~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~-~a~ll~vDn~k 123 (139)
.+..|||||+... .+++....|-+-+.+.++ +++++++|.+.
T Consensus 85 ~~e~iVGWY~tg~-----~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~ 127 (338)
T 4b4t_U 85 AKEKLIGWYHSGP-----KLRASDLKINELFKKYTQNNPLLLIVDVKQ 127 (338)
T ss_dssp CSCEEEEEEECCS-----SCCSTHHHHHHHHGGGCCSCCCEEEECSCC
T ss_pred ccCCEEEEEecCC-----CCCccHHHHHHHHHhccCCCcEEEEecCCC
Confidence 6699999999753 345556678888888774 67888887655
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.15 E-value=2.2e-05 Score=57.88 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=71.7
Q ss_pred eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceecccc-----ccCchhHHHHHHHHHHHHhhhCCce
Q 032531 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-----HLGLLPNLEISLIMIEEHYSAQGLG 80 (139)
Q Consensus 6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~-----~~~LsPmlEvAL~~id~~~~~~~l~ 80 (139)
+.|+..++.+|+-||.+-.-..++|+|+|+..++ ...|+|.+|+=-. ...+.|- .+..+..++++.|+.
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~---~~~v~~~~p~~n~~~~~~~f~~dp~---~~~~~~~~~~~~g~~ 75 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGD---DRWVERVYPLNNLDQSPEHFSMDPR---EQLTAVKDMRKNGWV 75 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETT---EEEEEEEECCCCCSCCSSSCCCCHH---HHHHHHHHHHHHTCE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCC---CcEEEEEEECCCcCCCCceEEECHH---HHHHHHHHHHHCCCE
Confidence 6899999999999999844479999999986543 5788999998411 1233443 233444566778999
Q ss_pred EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeC
Q 032531 81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
+||+||...... ..||..-.+.+ ..++.+.+++..
T Consensus 76 ivG~~HSHP~~~-~~PS~~D~~~~-----~~~~~~~lIvs~ 110 (146)
T 2kks_A 76 MLGNFHSHPATP-ARPSAEDKRLA-----FDPSLSYLIISL 110 (146)
T ss_dssp EEEEEEEESSSC-SSCCHHHHTTC-----CSSSCEEEEEEC
T ss_pred EEEEEeCCCcCC-CCCCHHHHHhh-----hcCCCeEEEEEc
Confidence 999999986543 55776554432 235666665543
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.14 E-value=1.5e-05 Score=59.14 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=71.0
Q ss_pred eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceecccc-------ccCchhHHHHHHHHHHHHhhhCC
Q 032531 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-------HLGLLPNLEISLIMIEEHYSAQG 78 (139)
Q Consensus 6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~-------~~~LsPmlEvAL~~id~~~~~~~ 78 (139)
+.|+..++.||+-||.+---..++|+|+|+...+ ..+.|+|.+|+-=. ...+.|.- +..++.+.++.|
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~--~~~~v~~~~p~~n~~~~~~~~~f~~dp~~---~~~~~~~~~~~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDD--GDNRVAALHRATNRRSEQRTRRYELTADD---YRAADAAAQEQG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTT--SCEEEEEEEESSCCCCCCCSCCSSCCCCS---HHHHHHHHHHHT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccC--CCeEEEEEEECCCCCCCCCCcEEEECHHH---HHHHHHHHHHCC
Confidence 3688999999999999853479999999986522 36889999999532 12234432 334455667789
Q ss_pred ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEe
Q 032531 79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120 (139)
Q Consensus 79 l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vD 120 (139)
+.|||+||...... ..||..-.+-+ ..++.+.+++.
T Consensus 76 ~~ivG~yHSHP~~~-~~PS~~D~~~~-----~~~~~~~lIvs 111 (153)
T 2kcq_A 76 LDVVGVYHSHPDHP-ARPSATDLEEA-----TFPGFTYVIVS 111 (153)
T ss_dssp CEEEEEEEECSSSS-SSCCHHHHHTC-----CCTTSEEEEEE
T ss_pred CeEEEEEeCCCCCC-CCCCHHHHHhh-----hcCCCeEEEEE
Confidence 99999999987543 56776654322 23566555553
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.83 E-value=0.00019 Score=51.38 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=63.4
Q ss_pred CcceeEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceE
Q 032531 2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGI 81 (139)
Q Consensus 2 ~~M~v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~I 81 (139)
|+| +.|+..++.+|+-||.+---..++|+|+|+. -.|+|.+|+= .. .-.|-.+.- ......|+.+
T Consensus 1 ~~~-v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~-------~~v~~~~~~p-~~-~~~~~~~f~-----~~~~~~~~~i 65 (124)
T 1oi0_A 1 GSS-MKISRGLLKTILEAAKSAHPDEFIALLSGSK-------DVMDELIFLP-FV-SGSVSAVIH-----LDMLPIGMKV 65 (124)
T ss_dssp CCS-CEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------TEECEEEECC-CC-C------------------CCCEE
T ss_pred CCE-EEEcHHHHHHHHHHHHhcCCCeeEEEEeccc-------CEEEEEEECC-CC-CCCcCceee-----eeeccCCCEE
Confidence 456 8899999999999997654469999999963 1678888876 42 222211111 1234588999
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEe
Q 032531 82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120 (139)
Q Consensus 82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vD 120 (139)
||+||...... ..||..-.+-+. .++...+++.
T Consensus 66 vG~~HSHP~~~-~~PS~~D~~~~~-----~~~~~~lIvs 98 (124)
T 1oi0_A 66 FGTVHSHPSPS-CRPSEEDLSLFT-----RFGKYHIIVC 98 (124)
T ss_dssp EEEEEEESSSC-CSCCHHHHHHHH-----HSCSEEEEEE
T ss_pred EEEEEECcCCC-CccCHHHHHhhh-----cCCCEEEEEE
Confidence 99999986533 667776655544 2566666664
No 10
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=29.55 E-value=1.4e+02 Score=20.43 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhh
Q 032531 63 LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRY 110 (139)
Q Consensus 63 lEvAL~~id~~~~~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~ 110 (139)
+|-=...+..||+++|+.+++.|.-........--|--.++-+.+.+.
T Consensus 23 l~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g 70 (138)
T 3bvp_A 23 IDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENK 70 (138)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhC
Confidence 344455678999999999999997532111111125555666666554
No 11
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=25.76 E-value=79 Score=22.34 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=31.2
Q ss_pred HHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeC
Q 032531 71 EEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 71 d~~~~~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
+..+.+.++..+|.+ .|.+++...++|.+.|.+...+.++++.|=
T Consensus 23 ~~i~g~~~i~~~~~~------~~~~~~~~~~~i~~ai~~~~~dgVlvltDL 67 (131)
T 3ct6_A 23 REVAKNISLTAIGGL------ENGEIGTSFDRVMNAIEENEADNLLTFFDL 67 (131)
T ss_dssp HTTCSSSCEEEEESC------TTSCSSCCHHHHHHHHHHSSCSEEEEEESS
T ss_pred HHhcCccCEEEEEcC------CCCCHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 333444455566544 346677788999999988666789998874
No 12
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=25.36 E-value=48 Score=26.65 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCCceEEEEeC
Q 032531 99 IAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 99 ~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
+.+.++++|.++.|+++++++-|
T Consensus 97 I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 97 IIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp HHHHHHHHHHTTSTTCEEEECSS
T ss_pred HHHHHHHHHHhcCCceEEEEecC
Confidence 56789999999999999999866
No 13
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=25.30 E-value=49 Score=28.31 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEeC
Q 032531 98 SIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 98 ~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
|+...|++.|.+.+|+|.+|.+-|
T Consensus 137 ~v~~~i~~~i~~~~P~A~~in~tN 160 (477)
T 3u95_A 137 KLALEIAEKMKKMAPKAYLMQTAN 160 (477)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECSS
T ss_pred HHHHHHHHHHHhhCCCeEEEEecC
Confidence 466899999999999999998765
No 14
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=24.96 E-value=52 Score=28.25 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEEeC
Q 032531 98 SIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 98 ~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
|+...|++.|.+.+|+|.+|.+-|
T Consensus 149 ~i~~~i~~~i~~~~P~A~ii~~TN 172 (472)
T 1u8x_X 149 GGVLEILDYMEKYSPDAWMLNYSN 172 (472)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCS
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCC
Confidence 568899999999999999998765
No 15
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=24.36 E-value=52 Score=27.94 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEeC
Q 032531 98 SIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 98 ~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
|+...|++.|.+.+|+|.+|.+-|
T Consensus 130 ~i~~~i~~~i~~~~P~a~ii~~tN 153 (450)
T 1s6y_A 130 PVILDIIRDMEELCPDAWLINFTN 153 (450)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECSS
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCC
Confidence 678899999999999999998765
No 16
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.92 E-value=1.6e+02 Score=19.11 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=23.1
Q ss_pred ceeccccccCchhH--HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHh
Q 032531 49 SVPLFHSHLGLLPN--LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICR 109 (139)
Q Consensus 49 aVPLfH~~~~LsPm--lEvAL~~id~~~~~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~ 109 (139)
+.|.+.. ..+|. +.-.+..+....+.+...++|-|-. ........+.+.+.+
T Consensus 53 g~p~y~~--~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~-------~~~~~~~~l~~~l~~ 106 (137)
T 2fz5_A 53 GCPAMGS--EELEDSVVEPFFTDLAPKLKGKKVGLFGSYGW-------GSGEWMDAWKQRTED 106 (137)
T ss_dssp ECCCBTT--TBCCHHHHHHHHHHHGGGCSSCEEEEEEEESS-------CCSHHHHHHHHHHHH
T ss_pred EccccCC--CCCCHHHHHHHHHHhhhhcCCCEEEEEEecCC-------CCchHHHHHHHHHHH
Confidence 3566644 34454 5555544432222233445555421 123455555555543
No 17
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=21.81 E-value=62 Score=27.90 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEEeC
Q 032531 98 SIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 98 ~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
++.+.|+++|.+.+|+|.+|.+-|
T Consensus 130 ~i~~~i~~~i~~~~P~A~ii~~TN 153 (480)
T 1obb_A 130 KYFVDIARKIEKLSPKAWYLQAAN 153 (480)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECSS
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCC
Confidence 789999999999999999988765
No 18
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=21.49 E-value=66 Score=27.49 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEEeC
Q 032531 98 SIAKNIGNHICRYFPQCAVLLITK 121 (139)
Q Consensus 98 ~~a~kIa~kI~~~~~~a~ll~vDn 121 (139)
++...|+++|.+.+|+|.+|.+-|
T Consensus 124 ~i~~~i~~~i~~~~p~a~~i~~tN 147 (450)
T 3fef_A 124 PIFAEIARAIRDYAPESWVINYTN 147 (450)
T ss_dssp HHHHHHHHHHHHHCTTSEEEECCS
T ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Confidence 678999999999999999999866
No 19
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=20.06 E-value=41 Score=24.25 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=33.6
Q ss_pred ceecccccc-CchhHHHHHHHHHHHHhhhCCceEEE-------EEEeCCCCCCCCCCHHHHH
Q 032531 49 SVPLFHSHL-GLLPNLEISLIMIEEHYSAQGLGIVG-------YFHANERFDDLELDSIAKN 102 (139)
Q Consensus 49 aVPLfH~~~-~LsPmlEvAL~~id~~~~~~~l~IvG-------yY~Ane~~~d~~~~~~a~k 102 (139)
=|||.|.+. ..+||=-.==.+.|.|+++.++.+.= .|-+-+.++..++......
T Consensus 27 EIPL~~~yvYq~~~~D~TlK~mLeRWa~ds~m~l~Y~~~~DyTLy~~vs~I~tt~~~qA~~E 88 (120)
T 2l4w_A 27 EIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATE 88 (120)
T ss_dssp CCCSCCCCCBCCCTTTCBHHHHHHHHHHHTTCEEEECCSSCCBCCSTTTTCCBSCHHHHHHH
T ss_pred eeecccceeEEEeecchHHHHHHHHHHhhcCCceeecCccceeeehhhhhhhhhhHHHHHHH
Confidence 379999865 24666555556779999999988751 2333445555555544333
Done!