BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032532
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis
thaliana GN=CBSX3 PE=1 SV=1
Length = 206
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/139 (79%), Positives = 125/139 (89%), Gaps = 1/139 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
MQG I+SF+S GN+VK +VLQ +R++NP ++P V SR ES ARMEE GFESTTISD+
Sbjct: 1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
+K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120
Query: 120 IVQGRSSKSTKVGDIMTEE 138
IVQGRSSKSTKVGDIMTEE
Sbjct: 121 IVQGRSSKSTKVGDIMTEE 139
>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0653 PE=4 SV=1
Length = 194
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
T + ++YD MT++N+GA+V+V E GI+TERD +++++ SK+ K D+
Sbjct: 21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDV 72
Query: 135 MTEEV 139
+ EEV
Sbjct: 73 LAEEV 77
>sp|O34682|YLBB_BACSU Uncharacterized protein YlbB OS=Bacillus subtilis (strain 168)
GN=ylbB PE=4 SV=2
Length = 148
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T I D++ A +CT D VY+A M NVGA+ VV + +++ GI+T+R
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53
Query: 114 DY-LRKIIVQGRSSKSTKVGDIMTEE 138
D LR I + + S K+ D MTE+
Sbjct: 54 DLVLRGIAI--KKPNSQKITDAMTEK 77
>sp|P54606|YHCV_BACSU CBS domain-containing protein YhcV OS=Bacillus subtilis (strain
168) GN=yhcV PE=4 SV=1
Length = 140
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
+ + T+ +A M QHNVGA+ VV EQ + G++T+RD + QGR + T V +
Sbjct: 15 VSPNQTIQEAASLMKQHNVGAIPVV---EQGVLKGMLTDRDIALRTTAQGRDGQ-TPVSE 70
Query: 134 IMTEEV 139
+M+ E+
Sbjct: 71 VMSTEL 76
>sp|P21879|IMDH_BACSU Inosine-5'-monophosphate dehydrogenase OS=Bacillus subtilis (strain
168) GN=guaB PE=1 SV=2
Length = 488
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
D +K +G + + T D V+DA M ++ + + +V E + + GIIT RD LR
Sbjct: 86 DKVKRSERGVITNPFFLTPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRD-LR 144
Query: 118 KIIVQGRSSKSTKVGDIMTEE 138
I S S K+ D+MT+E
Sbjct: 145 FI-----SDYSMKISDVMTKE 160
>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4
SV=2
Length = 196
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
+T + M +H +G++V+V E+ GIITERD + K++ QG++ DIM++
Sbjct: 21 ETAVEIAYKMREHGIGSVVIV--NEKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQ 78
Query: 138 EV 139
V
Sbjct: 79 PV 80
>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus
ambivalens PE=4 SV=1
Length = 164
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
T+ +A K M +HN+G+LVV+ Q V GIITERD ++
Sbjct: 21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDIVK 57
>sp|Q4L385|IMDH_STAHJ Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=guaB PE=3 SV=1
Length = 488
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T D++VY+A M ++ + + +V E + + GI+T RD LR I S K+
Sbjct: 100 FYLTPDESVYEAEALMGKYRISGVPIVSDKESRELVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 SDVMTKE 160
>sp|Q58629|Y1232_METJA Uncharacterized protein MJ1232 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1232 PE=4 SV=1
Length = 296
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
D+ +YDA+K M ++NVG LV+V + + GIIT D L+ I+ G+ ++
Sbjct: 246 DEKIYDALKIMNKNNVGRLVIVD--DNNKIVGIITRTDILK--IISGKFPEN 293
>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana
GN=CBSCBSPB1 PE=1 SV=1
Length = 543
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
T+Y+A K M V AL++ E + GI+T++D ++I Q + + T V +MT+
Sbjct: 71 TIYEACKRMASRRVDALLLTDSNEM--LCGILTDKDIATRVISQELNVEETPVSKVMTK 127
>sp|O67500|Y1546_AQUAE Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus
(strain VF5) GN=aq_1546 PE=3 SV=1
Length = 322
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
D ++ +A+ MT GA VV E+ + GIIT+ D LR+ + +G S ++T+ D+MT
Sbjct: 215 DTSMKEAIIEMTAKGFGATAVVN--EEGKLVGIITDGD-LRRFVNRGGSFENTRAKDVMT 271
Query: 137 E 137
+
Sbjct: 272 K 272
>sp|Q8NY70|IMDH_STAAW Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain MW2) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q6GC82|IMDH_STAAS Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain MSSA476) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q6GJQ7|IMDH_STAAR Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain MRSA252) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|P99106|IMDH_STAAN Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain N315) GN=guaB PE=1 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|P65169|IMDH_STAAM Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=guaB PE=1 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q5HIQ7|IMDH_STAAC Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain COL) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q2YVL6|IMDH_STAAB Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q2G0Y7|IMDH_STAA8 Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain NCTC 8325) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q2FJM6|IMDH_STAA3 Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain USA300) GN=guaB PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E +++ GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 VDVMTQE 160
>sp|Q49UU8|IMDH_STAS1 Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=guaB PE=3 SV=1
Length = 488
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++V++A M ++ + + +V E + GIIT RD LR I S K+
Sbjct: 100 FFLTPEESVFEAEALMGKYRISGVPIVNNKEDRQFVGIITNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 154 SDVMTKE 160
>sp|Q8CMQ7|IMDH_STAES Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=guaB PE=3 SV=1
Length = 488
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E + + GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNQEDRKLIGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT++
Sbjct: 154 SDVMTKD 160
>sp|Q5HRX2|IMDH_STAEQ Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=guaB PE=3
SV=1
Length = 488
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T +++VY+A M ++ + + +V E + + GI+T RD LR I S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNQEDRKLIGILTNRD-LRFI-----EDFSIKI 153
Query: 132 GDIMTEE 138
D+MT++
Sbjct: 154 SDVMTKD 160
>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana
GN=CBSCBSPB2 PE=2 SV=1
Length = 536
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
TV+DA + M V A+++ ++GI+T++D ++I +G + T V +MT
Sbjct: 78 TVFDACRRMAARRVDAVLLTD--SSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMT 133
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
D V+ A K M V + V++ G + + GI+T +D L +++ Q S + T V +MT
Sbjct: 241 DPVFVASKKMRDLRVNS-VIIAVGNK--IHGILTSKDILMRVVAQNLSPELTLVEKVMT 296
>sp|P15889|YR33_THEPE Uncharacterized 33.4 kDa protein in ribosomal RNA operon
OS=Thermofilum pendens PE=4 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 83 AVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
AV M +H +GALVV G+ + GI+TERD L ++
Sbjct: 243 AVSLMKKHGIGALVVTHDGKPR---GIVTERDVLTRL 276
>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana
GN=CBSCBSPB3 PE=1 SV=1
Length = 556
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
TV+DA + M V A ++ ++GI+T++D ++I +G T V +MT
Sbjct: 80 TVFDACRRMAARRVDACLLTD--SSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMT 135
>sp|Q0BWA1|PDRP_GRABC Putative pyruvate, phosphate dikinase regulatory protein
OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1) GN=GbCGDNIH1_0003 PE=3 SV=1
Length = 297
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 80 VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
V D V S+ QH++G + +PG Q + + DY R+I
Sbjct: 104 VLDPVLSLLQHHIGEQAIARPGRQ-----YVLDADYFRRI 138
>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana
GN=CBSCBSPB5 PE=2 SV=1
Length = 548
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
T+++A + M V AL++ + GI+T+RD K+I + + + T V +MT+
Sbjct: 79 TLFEACRRMAARRVDALLLTD--SNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTK 135
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
D+TV M ++ A +V+ + + GI+T +D L ++I Q ++T V +MT
Sbjct: 246 DETVLGVTMKMVEYQSSAAMVMV---ENKLVGILTSKDILMRVISQNLPQETTTVEKVMT 302
>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana
GN=CBSCBSPB4 PE=2 SV=2
Length = 548
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
T+++A + M V AL++ + GI+T+RD K+I + + + T V +MT+
Sbjct: 79 TLFEACRRMAARRVDALLLTD--SNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTK 135
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
D+TV M ++ A +V+ + + GI+T +D L ++I Q ++T V +MT
Sbjct: 246 DETVLGVTMKMVEYQSSAAMVMV---ENKLVGILTSKDILMRVISQNLPQETTTVEKVMT 302
>sp|Q0BS63|LPXB_GRABC Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1) GN=lpxB PE=3 SV=1
Length = 393
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 12 GNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFES 53
G+++ + ++ +R +NP S RF + RMEE GF+S
Sbjct: 15 GDVLGARLIHALRAINP------SIRFAGIGGPRMEECGFQS 50
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 30 LRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89
L P ++R + SS +H F +T S G G+ GS + C DTV + +S+
Sbjct: 572 LHPNETARGDEDSSVTPHQHSFTPSTPS-----AGDGSPGSGIECPKCDTVLGSSRSLGG 626
Query: 90 H 90
H
Sbjct: 627 H 627
>sp|Q92888|ARHG1_HUMAN Rho guanine nucleotide exchange factor 1 OS=Homo sapiens GN=ARHGEF1
PE=1 SV=2
Length = 912
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 470 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 508
>sp|O34994|CCPN_BACSU Transcriptional repressor CcpN OS=Bacillus subtilis (strain 168)
GN=ccpN PE=1 SV=1
Length = 212
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
+VYDA+ +M +VG L VV + G+++ +D LR I Q + S V IMT
Sbjct: 95 SVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQQELT-SVPVHIIMT 149
>sp|Q54JA3|SIBE_DICDI Integrin beta-like protein E OS=Dictyostelium discoideum GN=sibE PE=1
SV=1
Length = 1946
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-------SVSSARMEEHGFESTTI 56
+ Q+ S G I S ++LV+ ++PV SS SVS + +ST+
Sbjct: 959 SFQAVDSVGAISTSTCTLTVKLVHTNIKPVSSSTSPISVIPRGSVSLTLVSTDS-DSTSA 1017
Query: 57 SDILKAKGKGADGSWLWCTTDDTVYDAVKS 86
+K+ KGA G + C+T+D ++ ++
Sbjct: 1018 KFTIKSVNKGAKGDFYTCSTNDCTCNSTQT 1047
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,584,910
Number of Sequences: 539616
Number of extensions: 1563272
Number of successful extensions: 5135
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5097
Number of HSP's gapped (non-prelim): 63
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)