Query 032535
Match_columns 139
No_of_seqs 169 out of 1075
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0544 FKBP-type peptidyl-pro 100.0 1.4E-32 3.1E-37 169.7 11.6 107 12-121 2-108 (108)
2 COG0545 FkpA FKBP-type peptidy 100.0 1.6E-32 3.5E-37 192.3 12.3 109 7-121 97-205 (205)
3 KOG0549 FKBP-type peptidyl-pro 100.0 1.5E-30 3.2E-35 179.1 14.1 116 9-126 66-181 (188)
4 PRK11570 peptidyl-prolyl cis-t 100.0 2.9E-28 6.2E-33 174.5 14.1 108 8-121 99-206 (206)
5 TIGR03516 ppisom_GldI peptidyl 100.0 1.2E-27 2.6E-32 167.7 14.6 113 7-122 65-177 (177)
6 PRK10902 FKBP-type peptidyl-pr 99.9 7E-26 1.5E-30 167.7 15.2 113 8-127 143-255 (269)
7 KOG0552 FKBP-type peptidyl-pro 99.9 1E-25 2.2E-30 161.3 12.2 110 7-121 116-226 (226)
8 PF00254 FKBP_C: FKBP-type pep 99.9 1.8E-23 3.8E-28 132.7 12.1 87 31-118 7-94 (94)
9 KOG0543 FKBP-type peptidyl-pro 99.9 2.2E-20 4.8E-25 142.6 14.5 119 10-135 83-204 (397)
10 PRK15095 FKBP-type peptidyl-pr 99.8 4.1E-20 8.9E-25 127.3 10.3 100 30-130 6-153 (156)
11 COG1047 SlpA FKBP-type peptidy 99.8 4.7E-18 1E-22 117.5 9.5 97 31-128 5-148 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.7 1.2E-17 2.7E-22 118.3 9.2 95 32-128 6-147 (196)
13 TIGR00115 tig trigger factor. 99.3 1.5E-11 3.2E-16 96.5 11.8 92 28-128 146-237 (408)
14 PRK01490 tig trigger factor; P 99.3 4.8E-11 1E-15 94.4 11.9 92 28-128 157-248 (435)
15 KOG0543 FKBP-type peptidyl-pro 99.3 7.6E-12 1.6E-16 96.2 6.6 83 19-119 1-83 (397)
16 COG0544 Tig FKBP-type peptidyl 99.2 2.4E-10 5.1E-15 90.4 10.1 92 29-129 158-249 (441)
17 KOG0545 Aryl-hydrocarbon recep 99.1 3.2E-11 6.9E-16 87.9 0.5 130 6-136 5-175 (329)
18 KOG0549 FKBP-type peptidyl-pro 98.0 6.1E-06 1.3E-10 57.6 3.2 56 62-121 1-56 (188)
19 PRK05892 nucleoside diphosphat 70.8 29 0.00063 23.9 6.6 23 70-92 122-144 (158)
20 PRK05753 nucleoside diphosphat 62.0 19 0.00042 24.1 4.3 24 69-92 91-114 (137)
21 PRK00226 greA transcription el 61.9 22 0.00048 24.2 4.7 25 69-93 122-146 (157)
22 TIGR01462 greA transcription e 60.2 21 0.00045 24.3 4.2 26 68-93 116-141 (151)
23 TIGR01461 greB transcription e 59.3 15 0.00033 25.2 3.5 25 69-93 119-143 (156)
24 PF01272 GreA_GreB: Transcript 59.2 12 0.00027 22.2 2.7 24 70-93 43-66 (77)
25 PHA02122 hypothetical protein 58.6 21 0.00046 20.2 3.3 20 31-52 40-59 (65)
26 PF09122 DUF1930: Domain of un 50.4 31 0.00068 20.0 3.2 22 71-92 35-56 (68)
27 PRK01885 greB transcription el 48.9 30 0.00064 23.8 3.5 24 70-93 122-145 (157)
28 COG0782 Uncharacterized conser 47.0 66 0.0014 21.9 5.0 23 69-91 115-137 (151)
29 PRK00809 hypothetical protein; 44.3 99 0.0021 20.9 5.5 25 69-93 24-48 (144)
30 COG0024 Map Methionine aminope 42.6 1.4E+02 0.0031 22.3 7.5 54 26-87 84-147 (255)
31 PF00639 Rotamase: PPIC-type P 34.7 48 0.001 20.2 2.6 26 64-89 57-82 (95)
32 PRK14720 transcript cleavage f 34.4 1.8E+02 0.0039 26.1 6.7 24 69-92 867-890 (906)
33 COG0425 SirA Predicted redox p 30.6 79 0.0017 19.0 3.0 25 72-96 21-45 (78)
34 TIGR02925 cis_trans_EpsD pepti 29.7 56 0.0012 23.4 2.7 21 66-86 189-209 (232)
35 PRK06342 transcription elongat 28.7 1.1E+02 0.0025 21.1 3.9 20 69-88 130-149 (160)
36 COG3901 NosR Regulator of nitr 26.3 1.3E+02 0.0029 24.2 4.2 124 2-135 205-337 (482)
37 cd03420 SirA_RHOD_Pry_redox Si 25.0 1.1E+02 0.0025 17.5 3.0 23 73-95 16-38 (69)
38 cd03422 YedF YedF is a bacteri 23.3 1.2E+02 0.0026 17.4 2.8 22 73-94 16-37 (69)
39 TIGR00495 crvDNA_42K 42K curve 20.7 4.4E+02 0.0095 21.0 6.8 52 28-87 100-165 (389)
40 TIGR03595 Obg_CgtA_exten Obg f 20.5 1E+02 0.0022 18.0 2.1 19 71-89 43-63 (69)
41 PRK12450 foldase protein PrsA; 20.1 82 0.0018 24.0 2.0 29 61-89 194-222 (309)
42 PF01206 TusA: Sulfurtransfera 20.0 1.5E+02 0.0033 16.7 2.8 24 73-96 17-40 (70)
No 1
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=169.68 Aligned_cols=107 Identities=43% Similarity=0.821 Sum_probs=100.7
Q ss_pred CEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEc
Q 032535 12 GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCK 91 (139)
Q Consensus 12 gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip 91 (139)
|+.+++|++|+|. ..|.. ||.|++||++.+. ||+.||||.+++.|+.|.+|.+++|.||++++..|.+|+++++.|+
T Consensus 2 Gv~~~~i~~Gdg~-tfpK~-Gqtvt~hYtg~L~-dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPGDGR-TFPKK-GQTVTVHYTGTLQ-DGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCCCCc-ccCCC-CCEEEEEEEeEec-CCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 6899999999984 45655 5999999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCeEEEEEEEEEEe
Q 032535 92 PEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (139)
Q Consensus 92 ~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~ 121 (139)
|++|||..|.+..||||++|+|+|+|+++.
T Consensus 79 pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 79 PDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred cccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 999999999999999999999999999873
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=192.34 Aligned_cols=109 Identities=42% Similarity=0.705 Sum_probs=101.1
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEE
Q 032535 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86 (139)
Q Consensus 7 ~~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~ 86 (139)
.+.++||+|++++.|+|.. |.. |+.|++||++++. ||++|||++.+++|+.|.++ .+|+||.++|.+|++|+++
T Consensus 97 ~~~~sgl~y~~~~~G~G~~--~~~-~~~V~vhY~G~l~-~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~ 170 (205)
T COG0545 97 KTLPSGLQYKVLKAGDGAA--PKK-GDTVTVHYTGTLI-DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKR 170 (205)
T ss_pred eECCCCcEEEEEeccCCCC--CCC-CCEEEEEEEEecC-CCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceE
Confidence 3578999999999999875 444 4999999999998 99999999999999999999 9999999999999999999
Q ss_pred EEEEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEe
Q 032535 87 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (139)
Q Consensus 87 ~~~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~ 121 (139)
+++|||++|||.+|.+..||||++|+|+|+|+++.
T Consensus 171 ~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 171 KLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred EEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 99999999999999777799999999999999873
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=179.10 Aligned_cols=116 Identities=36% Similarity=0.650 Sum_probs=106.6
Q ss_pred CCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEE
Q 032535 9 GDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKL 88 (139)
Q Consensus 9 ~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~ 88 (139)
..+.|+..++++- ..+...++.||.|++||++.+. ||++|||||..++|+.|++|.+++++||+.+|.+||+||++.+
T Consensus 66 ~~~~l~I~v~~~p-~~C~~kak~GD~l~~HY~g~le-DGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 66 PDEELQIGVLKKP-EECPEKAKKGDTLHVHYTGSLE-DGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred CCCceeEEEEECC-ccccccccCCCEEEEEEEEEec-CCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 4577999999983 3377777888999999999887 9999999999999999999999999999999999999999999
Q ss_pred EEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEecCCCC
Q 032535 89 TCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGS 126 (139)
Q Consensus 89 ~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~~~~~~ 126 (139)
+|||+++||++|.++.||++++|+|+|+|+++.+.+++
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~~~ 181 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGPPE 181 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCCCc
Confidence 99999999999988889999999999999999986544
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.96 E-value=2.9e-28 Score=174.50 Aligned_cols=108 Identities=35% Similarity=0.561 Sum_probs=100.1
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEE
Q 032535 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (139)
Q Consensus 8 ~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 87 (139)
++++||+|+|+++|+|.. |.. ||.|.+||++++. ||++|++++.++.|+.|.++ .+++||+++|.+|++|+++.
T Consensus 99 ~t~sGl~y~vi~~G~G~~--p~~-~d~V~v~Y~g~l~-dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~ 172 (206)
T PRK11570 99 STESGLQFRVLTQGEGAI--PAR-TDRVRVHYTGKLI-DGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWE 172 (206)
T ss_pred ECCCCcEEEEEeCCCCCC--CCC-CCEEEEEEEEEEC-CCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEE
Confidence 578999999999999964 554 4999999999997 99999999988899999997 79999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEe
Q 032535 88 LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (139)
Q Consensus 88 ~~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~ 121 (139)
|+|||++|||..+.++.|||+++|+|+|+|++|.
T Consensus 173 ~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 173 LTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred EEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 9999999999999877899999999999999973
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.96 E-value=1.2e-27 Score=167.71 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=102.4
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEE
Q 032535 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86 (139)
Q Consensus 7 ~~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~ 86 (139)
.++++|++|.+++++.|+..+|.. ||.|++||++++. ||++|++++.. .|+.|.+|.+++++||+++|.+|++|+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~~-gd~V~v~Y~~~~~-dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPEF-GDLVTFEYDIRAL-DGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCCC-CCEEEEEEEEEeC-CCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 467899999999887766556765 5999999999998 99999999864 59999999999999999999999999999
Q ss_pred EEEEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEec
Q 032535 87 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRP 122 (139)
Q Consensus 87 ~~~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~~ 122 (139)
+|+|||++|||..|.+..||||++|+|+|+|+++++
T Consensus 142 ~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 142 TFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 999999999999998788999999999999999853
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=7e-26 Score=167.68 Aligned_cols=113 Identities=35% Similarity=0.667 Sum_probs=101.7
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEE
Q 032535 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (139)
Q Consensus 8 ~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 87 (139)
+.++||+|+|+++|+|.. |.. ||.|+|||++++. ||++|++++.++.|+.|.++ .+++||+++|.+|++|+++.
T Consensus 143 ~t~sGl~y~Vi~~G~G~~--p~~-gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~ 216 (269)
T PRK10902 143 TTSTGLLYKVEKEGTGEA--PKD-SDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 216 (269)
T ss_pred ECCCccEEEEEeCCCCCC--CCC-CCEEEEEEEEEeC-CCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEE
Confidence 578999999999999963 544 5999999999987 99999999988889999986 79999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEecCCCCC
Q 032535 88 LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSS 127 (139)
Q Consensus 88 ~~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~~~~~~~ 127 (139)
|+||++++||..+.+ .|||+++|+|+|+|+++++.+...
T Consensus 217 l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~~~~ 255 (269)
T PRK10902 217 LVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAPKAD 255 (269)
T ss_pred EEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCcccc
Confidence 999999999999864 799999999999999998754443
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=161.33 Aligned_cols=110 Identities=35% Similarity=0.677 Sum_probs=100.3
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEE-EEeCCCcchHHHHHHHhcCCCCCE
Q 032535 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS-FELGKGSVIRAWDIALRSMKVGEV 85 (139)
Q Consensus 7 ~~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~-~~~g~~~~~~g~~~~l~~m~~Ge~ 85 (139)
.+..+||+|+.++-|+|+. |.. |+.|.+||.+++..+|++|++++.. .|+. |.+|.+.+|+||+.+|.+|++|.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~--a~~-G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGk 191 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPS--AKK-GKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGK 191 (226)
T ss_pred eecCCCcEEEEEEecCCCC--CCC-CCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCe
Confidence 5678999999999999874 443 5999999999998799999999864 7888 999999999999999999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEe
Q 032535 86 AKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (139)
Q Consensus 86 ~~~~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~ 121 (139)
++|+|||++|||.++.+ .||||++|+|+|+|+.+.
T Consensus 192 RrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 192 RRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred eEEEeCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 99999999999999875 899999999999999873
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.91 E-value=1.8e-23 Score=132.72 Aligned_cols=87 Identities=45% Similarity=0.835 Sum_probs=81.8
Q ss_pred CCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCC-CCCCCCCC
Q 032535 31 DLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-PPDVPPDA 109 (139)
Q Consensus 31 ~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~-~~~i~~~~ 109 (139)
.||.|++||++++. +|++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++|.||++++||..+. ...||+++
T Consensus 7 ~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~ 85 (94)
T PF00254_consen 7 EGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNS 85 (94)
T ss_dssp TTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTS
T ss_pred CCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCCCC
Confidence 45999999999998 99999999888899999999999999999999999999999999999999999886 44799999
Q ss_pred eEEEEEEEE
Q 032535 110 TLIFEVELV 118 (139)
Q Consensus 110 ~l~~~v~l~ 118 (139)
+|+|+|+|+
T Consensus 86 ~l~f~Iell 94 (94)
T PF00254_consen 86 TLVFEIELL 94 (94)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEC
Confidence 999999986
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-20 Score=142.64 Aligned_cols=119 Identities=47% Similarity=0.773 Sum_probs=100.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCC-CcchHHHHHHHhcCCCCCEEEE
Q 032535 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVGEVAKL 88 (139)
Q Consensus 10 ~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~-~~~~~g~~~~l~~m~~Ge~~~~ 88 (139)
|++|.++|+++|.|+..+|.++ ..|.+||.+++. ++ +|+++. ..+.|..|+ ..++.||+.||..|++||++.|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g-~~V~v~~~G~~~-~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKG-AVVKVHLEGELE-DG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCC-cEEEEEEEEEEC-Cc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 8999999999999976778875 999999999995 55 777742 458888888 4799999999999999999999
Q ss_pred EEcCCCccCC-CCCCCCCCCCCeEEEEEEEEEEe-cCCCCCcccccccc
Q 032535 89 TCKPEYAYGS-AGSPPDVPPDATLIFEVELVACR-PRKGSSLGSVSEER 135 (139)
Q Consensus 89 ~ip~~~ayg~-~g~~~~i~~~~~l~~~v~l~~v~-~~~~~~~~~~~~~~ 135 (139)
+|+|.++||. .+.++.|||+++|.|+|+|+++. ..+++| .+.++++
T Consensus 157 ~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~-~~~~~e~ 204 (397)
T KOG0543|consen 157 TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESW-KMFAEER 204 (397)
T ss_pred EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCccccc-ccchHHH
Confidence 9999999994 45677999999999999999999 445444 4555544
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=4.1e-20 Score=127.32 Aligned_cols=100 Identities=24% Similarity=0.405 Sum_probs=84.8
Q ss_pred CCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCC--------
Q 032535 30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-------- 101 (139)
Q Consensus 30 ~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~-------- 101 (139)
..|+.|++||++++. ||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||....
T Consensus 6 ~~~~~V~v~Y~~~~~-dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~~~v~~vp~ 84 (156)
T PRK15095 6 QSNSAVLVHFTLKLD-DGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSPDLIQYFSR 84 (156)
T ss_pred CCCCEEEEEEEEEeC-CCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHHEEEecH
Confidence 345899999999996 89999999877789999999999999999999999999999999999999998532
Q ss_pred ---CC-CCC------------------------------------CCCeEEEEEEEEEEecCCCCCccc
Q 032535 102 ---PP-DVP------------------------------------PDATLIFEVELVACRPRKGSSLGS 130 (139)
Q Consensus 102 ---~~-~i~------------------------------------~~~~l~~~v~l~~v~~~~~~~~~~ 130 (139)
+. ..+ ||.+|.|+|+|++++++.+....+
T Consensus 85 ~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i~~v~~at~ee~~~ 153 (156)
T PRK15095 85 RDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEAVHAD 153 (156)
T ss_pred HHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccCChhHhhc
Confidence 00 001 699999999999998776555433
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.7e-18 Score=117.46 Aligned_cols=97 Identities=33% Similarity=0.491 Sum_probs=83.7
Q ss_pred CCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCCCC-------
Q 032535 31 DLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP------- 103 (139)
Q Consensus 31 ~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~------- 103 (139)
.||.|++||++++. ||+++++|.....|+.|.+|.+++++||++||.+|.+|++..+.|||+.|||.+....
T Consensus 5 k~~~V~i~Y~~~~~-dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lvq~vp~~ 83 (174)
T COG1047 5 KGDVVSLHYTLKVE-DGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLVQRVPRD 83 (174)
T ss_pred CCCEEEEEEEEEec-CCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHeEEecHH
Confidence 35999999999997 7999999987568999999999999999999999999999999999999999854200
Q ss_pred ------------------C---CC-------------------CCCeEEEEEEEEEEecCCCCCc
Q 032535 104 ------------------D---VP-------------------PDATLIFEVELVACRPRKGSSL 128 (139)
Q Consensus 104 ------------------~---i~-------------------~~~~l~~~v~l~~v~~~~~~~~ 128 (139)
. +| ||++|.|+|+|+++++.+...+
T Consensus 84 ~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~a~~eei 148 (174)
T COG1047 84 EFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVREATEEEI 148 (174)
T ss_pred HhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEecChHHHH
Confidence 0 11 7999999999999998765443
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.74 E-value=1.2e-17 Score=118.26 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=82.1
Q ss_pred CCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCCCC--CC----
Q 032535 32 LPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP--DV---- 105 (139)
Q Consensus 32 gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~--~i---- 105 (139)
++.|+++|++++. +|++|++|+. ..|+.|.+|.++++|+|+++|.+|.+|++..|.|||+.|||.+.... .+
T Consensus 6 ~~vV~l~Y~l~~~-dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~ 83 (196)
T PRK10737 6 DLVVSLAYQVRTE-DGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDV 83 (196)
T ss_pred CCEEEEEEEEEeC-CCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHHEEEecHHH
Confidence 4899999999996 8999999975 48999999999999999999999999999999999999999864310 00
Q ss_pred -----------------------------------------CCCCeEEEEEEEEEEecCCCCCc
Q 032535 106 -----------------------------------------PPDATLIFEVELVACRPRKGSSL 128 (139)
Q Consensus 106 -----------------------------------------~~~~~l~~~v~l~~v~~~~~~~~ 128 (139)
-|+.+|.|+|+|++++++++..+
T Consensus 84 F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~at~eEi 147 (196)
T PRK10737 84 FMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEEL 147 (196)
T ss_pred CCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccCCHHHH
Confidence 06999999999999998765553
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.35 E-value=1.5e-11 Score=96.53 Aligned_cols=92 Identities=25% Similarity=0.402 Sum_probs=79.1
Q ss_pred CCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCCCCCCCC
Q 032535 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107 (139)
Q Consensus 28 ~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~~i~~ 107 (139)
+...||.|+++|+++. +|+.++++. ..++.|.+|.+.+++||+++|.||++|+++.|.+++...|+.... +
T Consensus 146 ~~~~gD~V~v~~~~~~--dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI--DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred ccCCCCEEEEEEEEEE--CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 4455799999999987 899988764 368999999999999999999999999999999999888876543 6
Q ss_pred CCeEEEEEEEEEEecCCCCCc
Q 032535 108 DATLIFEVELVACRPRKGSSL 128 (139)
Q Consensus 108 ~~~l~~~v~l~~v~~~~~~~~ 128 (139)
|.++.|.|+|.+|+....+.+
T Consensus 217 gk~~~f~v~i~~I~~~~~pel 237 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPEL 237 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCC
Confidence 789999999999998765544
No 14
>PRK01490 tig trigger factor; Provisional
Probab=99.29 E-value=4.8e-11 Score=94.41 Aligned_cols=92 Identities=26% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCCCCCCCC
Q 032535 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107 (139)
Q Consensus 28 ~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~~i~~ 107 (139)
|...||.|+++|.++. +|+.++++. ..++.|.+|.+.+++||+++|.||++|+++.|.+++...|+.... +
T Consensus 157 ~~~~gD~V~vd~~~~~--~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----a 227 (435)
T PRK01490 157 PAENGDRVTIDFVGSI--DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----A 227 (435)
T ss_pred cCCCCCEEEEEEEEEE--CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----C
Confidence 4566799999999998 888888754 367899999999999999999999999999999998888866443 6
Q ss_pred CCeEEEEEEEEEEecCCCCCc
Q 032535 108 DATLIFEVELVACRPRKGSSL 128 (139)
Q Consensus 108 ~~~l~~~v~l~~v~~~~~~~~ 128 (139)
|.++.|.|+|.+|+....+.+
T Consensus 228 gk~~~f~v~v~~V~~~~~pel 248 (435)
T PRK01490 228 GKEATFKVTVKEVKEKELPEL 248 (435)
T ss_pred CCeEEEEEEEEEeccCCCCCC
Confidence 789999999999998755443
No 15
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.6e-12 Score=96.17 Aligned_cols=83 Identities=46% Similarity=0.882 Sum_probs=74.2
Q ss_pred EcCCCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCC
Q 032535 19 RQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGS 98 (139)
Q Consensus 19 ~~G~g~~~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~ 98 (139)
++|+|. ..|.. |+.|.+||++++. ||+.|+||.+ +.|+.|.+|.++++.+|..++..|+. |.
T Consensus 1 ~eg~g~-~~p~~-g~~v~~hytg~l~-dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~ 62 (397)
T KOG0543|consen 1 KEGTGT-ETPMT-GDKVEVHYTGTLL-DGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GE 62 (397)
T ss_pred CCCCCc-cCCCC-CceeEEEEeEEec-CCeecccccC-CCceeeecCCCccccccccccccccc--------------cc
Confidence 478885 44665 5999999999998 9999999998 78999999999999999999999998 77
Q ss_pred CCCCCCCCCCCeEEEEEEEEE
Q 032535 99 AGSPPDVPPDATLIFEVELVA 119 (139)
Q Consensus 99 ~g~~~~i~~~~~l~~~v~l~~ 119 (139)
.+.++.||++++|.|+|+|++
T Consensus 63 ~~~pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 63 AGSPPKIPSNATLLFEVELLD 83 (397)
T ss_pred cCCCCCCCCCcceeeeecccC
Confidence 788889999999999999853
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.4e-10 Score=90.37 Aligned_cols=92 Identities=27% Similarity=0.418 Sum_probs=78.1
Q ss_pred CCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCCCCCCCCC
Q 032535 29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPD 108 (139)
Q Consensus 29 ~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~~i~~~ 108 (139)
...||.|+|+|.++. ||..|.... ...+.+.+|.++++|||+++|.||+.|++..|.+.....|..... +|
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AG 228 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CC
Confidence 345799999999988 899888854 356899999999999999999999999999998888888866543 67
Q ss_pred CeEEEEEEEEEEecCCCCCcc
Q 032535 109 ATLIFEVELVACRPRKGSSLG 129 (139)
Q Consensus 109 ~~l~~~v~l~~v~~~~~~~~~ 129 (139)
.+..|.|+|..|..+..+.++
T Consensus 229 K~a~F~V~vkeVk~~elpEld 249 (441)
T COG0544 229 KEATFKVKVKEVKKRELPELD 249 (441)
T ss_pred CceEEEEEEEEEeecCCCCCC
Confidence 789999999999987755543
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.2e-11 Score=87.90 Aligned_cols=130 Identities=23% Similarity=0.324 Sum_probs=97.4
Q ss_pred eccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEECC-CCcEEeccCCCCeeEEEEeCCCcchHHHHHHHhcCCCCC
Q 032535 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAE-TGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGE 84 (139)
Q Consensus 6 ~~~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~~-~g~~~~st~~~~~~~~~~~g~~~~~~g~~~~l~~m~~Ge 84 (139)
..+...||+++||..|+|.-..-. .|..|.+||.....+ .++++|+|...++|..+.+|...-++-|+..|..|+++|
T Consensus 5 a~l~~~gv~Kril~~G~g~l~e~~-dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 5 ALLNVEGVKKRILHGGTGELPEFI-DGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred hhccchhhhHhhccCCCccCcccc-CCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 345667999999999999755444 469999999988753 367999999889999999999888999999999999999
Q ss_pred EEEEEEcCCC--------------ccCCC--------------------CC---CCCCCCCCeEEEEEEEEEEecC---C
Q 032535 85 VAKLTCKPEY--------------AYGSA--------------------GS---PPDVPPDATLIFEVELVACRPR---K 124 (139)
Q Consensus 85 ~~~~~ip~~~--------------ayg~~--------------------g~---~~~i~~~~~l~~~v~l~~v~~~---~ 124 (139)
.+.|++.... +-|.. |. .......++|+|.++|+.|..+ .
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 9998765432 11211 00 0012346799999999999876 2
Q ss_pred CCCccccccccc
Q 032535 125 GSSLGSVSEERA 136 (139)
Q Consensus 125 ~~~~~~~~~~~~ 136 (139)
.+.|...++++.
T Consensus 164 ~e~WqlsddeKm 175 (329)
T KOG0545|consen 164 RETWQLSDDEKM 175 (329)
T ss_pred cccccCCchHhh
Confidence 334555566654
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.1e-06 Score=57.63 Aligned_cols=56 Identities=34% Similarity=0.472 Sum_probs=43.7
Q ss_pred EEeCCCcchHHHHHHHhcCCCCCEEEEEEcCCCccCCCCCCCCCCCCCeEEEEEEEEEEe
Q 032535 62 FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 121 (139)
Q Consensus 62 ~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~~i~~~~~l~~~v~l~~v~ 121 (139)
|++|.+.+++|++.+|.+|+.|+++.+++||+++||..+... -..++|.+.++.+-
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~~----~~~~~~~~~l~~~~ 56 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRGD----LNILVITILLVLLF 56 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccccc----ccceEEEeeeeehh
Confidence 357788999999999999999999999999999999554322 12456666666544
No 19
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=70.78 E-value=29 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.4
Q ss_pred hHHHHHHHhcCCCCCEEEEEEcC
Q 032535 70 IRAWDIALRSMKVGEVAKLTCKP 92 (139)
Q Consensus 70 ~~g~~~~l~~m~~Ge~~~~~ip~ 92 (139)
..-+-.||.|.++|+.+.+..|.
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcCC
Confidence 34688999999999999988665
No 20
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=61.96 E-value=19 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=19.8
Q ss_pred chHHHHHHHhcCCCCCEEEEEEcC
Q 032535 69 VIRAWDIALRSMKVGEVAKLTCKP 92 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~~ip~ 92 (139)
+..-+-.||.|.++|+.+.+..|.
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCC
Confidence 445688999999999999988553
No 21
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=61.90 E-value=22 Score=24.25 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=20.5
Q ss_pred chHHHHHHHhcCCCCCEEEEEEcCC
Q 032535 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~~ip~~ 93 (139)
...-+-.||.|.++|+.+.+.+|..
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCCC
Confidence 3456779999999999999987653
No 22
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=60.15 E-value=21 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.2
Q ss_pred cchHHHHHHHhcCCCCCEEEEEEcCC
Q 032535 68 SVIRAWDIALRSMKVGEVAKLTCKPE 93 (139)
Q Consensus 68 ~~~~g~~~~l~~m~~Ge~~~~~ip~~ 93 (139)
++...+-.||.|.++|+.+.+.+|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 34456889999999999999987653
No 23
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=59.31 E-value=15 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.4
Q ss_pred chHHHHHHHhcCCCCCEEEEEEcCC
Q 032535 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~~ip~~ 93 (139)
...-+-.||.|.++|+.+.+.+|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 3456889999999999999987653
No 24
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=59.19 E-value=12 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=18.2
Q ss_pred hHHHHHHHhcCCCCCEEEEEEcCC
Q 032535 70 IRAWDIALRSMKVGEVAKLTCKPE 93 (139)
Q Consensus 70 ~~g~~~~l~~m~~Ge~~~~~ip~~ 93 (139)
..-|-.||.|.++|+.+.+.+|..
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETTB
T ss_pred cCHHHHHhcCCCCCCEEEEEeCCc
Confidence 346789999999999999998653
No 25
>PHA02122 hypothetical protein
Probab=58.63 E-value=21 Score=20.21 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.4
Q ss_pred CCCEEEEEEEEEECCCCcEEec
Q 032535 31 DLPLVDVHYEGSLAETGEVFDT 52 (139)
Q Consensus 31 ~gd~V~v~y~~~~~~~g~~~~s 52 (139)
.||.|.++|.... +|+.|-.
T Consensus 40 ~gd~v~vn~e~~~--ng~l~i~ 59 (65)
T PHA02122 40 DGDEVIVNFELVV--NGKLIIN 59 (65)
T ss_pred CCCEEEEEEEEEE--CCEEEEe
Confidence 4689999999998 8887754
No 26
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=50.40 E-value=31 Score=20.04 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCCCEEEEEEcC
Q 032535 71 RAWDIALRSMKVGEVAKLTCKP 92 (139)
Q Consensus 71 ~g~~~~l~~m~~Ge~~~~~ip~ 92 (139)
+.+..|+..|+.||++.++..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 4688999999999999988654
No 27
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=48.89 E-value=30 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.1
Q ss_pred hHHHHHHHhcCCCCCEEEEEEcCC
Q 032535 70 IRAWDIALRSMKVGEVAKLTCKPE 93 (139)
Q Consensus 70 ~~g~~~~l~~m~~Ge~~~~~ip~~ 93 (139)
..-+-.||.|.++|+.+.+.+|..
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCC
Confidence 456789999999999999987653
No 28
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=47.01 E-value=66 Score=21.94 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.2
Q ss_pred chHHHHHHHhcCCCCCEEEEEEc
Q 032535 69 VIRAWDIALRSMKVGEVAKLTCK 91 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~~ip 91 (139)
...-+-.||.|.++|+.+.+..|
T Consensus 115 ~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 115 VDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred ccCHHHHHHhCCCCCCEEEEecC
Confidence 34467799999999999998866
No 29
>PRK00809 hypothetical protein; Provisional
Probab=44.27 E-value=99 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.9
Q ss_pred chHHHHHHHhcCCCCCEEEEEEcCC
Q 032535 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~~ip~~ 93 (139)
+..+=...|..|++||.+.|+.+..
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc
Confidence 3445567788899999999998875
No 30
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=42.63 E-value=1.4e+02 Score=22.33 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCCCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCCc------ch----HHHHHHHhcCCCCCEEE
Q 032535 26 LSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VI----RAWDIALRSMKVGEVAK 87 (139)
Q Consensus 26 ~~~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~------~~----~g~~~~l~~m~~Ge~~~ 87 (139)
.+..+.||.|.+++.+.. ||-.-|+ ..+|.+|... ++ ..|+.++..+++|-+..
T Consensus 84 ~~vlk~GDiv~IDvg~~~--dG~~~Ds------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~ 147 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHI--DGYIGDT------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLG 147 (255)
T ss_pred CcccCCCCEEEEEEEEEE--CCeeeeE------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 346677899999999998 7876665 3567777321 32 45777888888887543
No 31
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=34.71 E-value=48 Score=20.23 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.7
Q ss_pred eCCCcchHHHHHHHhcCCCCCEEEEE
Q 032535 64 LGKGSVIRAWDIALRSMKVGEVAKLT 89 (139)
Q Consensus 64 ~g~~~~~~g~~~~l~~m~~Ge~~~~~ 89 (139)
+..+.+.+.|..+|..|++|+....+
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 34448999999999999999998654
No 32
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=34.44 E-value=1.8e+02 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.0
Q ss_pred chHHHHHHHhcCCCCCEEEEEEcC
Q 032535 69 VIRAWDIALRSMKVGEVAKLTCKP 92 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~~ip~ 92 (139)
....+-.||.|-++|+.+.+.+|.
T Consensus 867 ~~SPLGkALLGkkvGD~V~v~~P~ 890 (906)
T PRK14720 867 YQSPLGKSLLGKKEGDSLEFVIND 890 (906)
T ss_pred CCCHHHHHHcCCCCCCEEEEEECC
Confidence 345678999999999999998764
No 33
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=30.59 E-value=79 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCCCEEEEEEcCCCcc
Q 032535 72 AWDIALRSMKVGEVAKLTCKPEYAY 96 (139)
Q Consensus 72 g~~~~l~~m~~Ge~~~~~ip~~~ay 96 (139)
-..++|..|+.|+...+......+.
T Consensus 21 ~~kk~l~~m~~Ge~LeV~~ddp~~~ 45 (78)
T COG0425 21 ETKKALAKLKPGEILEVIADDPAAK 45 (78)
T ss_pred HHHHHHHcCCCCCEEEEEecCcchH
Confidence 3678999999999999998766544
No 34
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=29.71 E-value=56 Score=23.43 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=18.5
Q ss_pred CCcchHHHHHHHhcCCCCCEE
Q 032535 66 KGSVIRAWDIALRSMKVGEVA 86 (139)
Q Consensus 66 ~~~~~~g~~~~l~~m~~Ge~~ 86 (139)
.+++++.|.+++..|++|+..
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is 209 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL 209 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE
Confidence 447889999999999999975
No 35
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.71 E-value=1.1e+02 Score=21.05 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.0
Q ss_pred chHHHHHHHhcCCCCCEEEE
Q 032535 69 VIRAWDIALRSMKVGEVAKL 88 (139)
Q Consensus 69 ~~~g~~~~l~~m~~Ge~~~~ 88 (139)
+..-+-.||.|.++|+.+.+
T Consensus 130 ~~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 130 YVSPVARALMGKAVGDVVSV 149 (160)
T ss_pred ccCHHHHHHcCCCCCCEEEE
Confidence 34568899999999999986
No 36
>COG3901 NosR Regulator of nitric oxide reductase transcription [Transcription]
Probab=26.31 E-value=1.3e+02 Score=24.15 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCceeccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEC----CCCcEEeccCCCCeeEEE-EeCCCcc-hHHHHH
Q 032535 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLA----ETGEVFDTTHEDNTVFSF-ELGKGSV-IRAWDI 75 (139)
Q Consensus 2 ~~~~~~~~~~gl~~~il~~G~g~~~~~~~~gd~V~v~y~~~~~----~~g~~~~st~~~~~~~~~-~~g~~~~-~~g~~~ 75 (139)
.+|.++.+++.++.--|..|.-... ..|. +=.+-.. .-++.|-+-|.. |+.. .+|..-+ -.++++
T Consensus 205 asW~~Lvg~GsvrrL~lt~gevt~a---fr~a----~~e~~~e~e~a~~~epFIeLy~a--~ln~P~iG~SLLG~s~y~~ 275 (482)
T COG3901 205 ASWATLVGDGSVRRLLLTVGEVTDA---FRGA----PEEAALEPETAHPDEPFIELYFA--PLNVPDIGRSLLGDSAYED 275 (482)
T ss_pred ccHHHHhcCCceeEEEEeccchhhh---hhcC----chhhcCCCCcCCCCCccceeeec--cCCcchhhhhhhchhHHHH
Confidence 4799999999999999987754311 0000 0000000 011222221110 1000 1221111 146888
Q ss_pred HHhcCCCCCEEEEEEcCCCccCCCCCC---CCCCCCCeEEEEEEEEEEecCCCCCcccccccc
Q 032535 76 ALRSMKVGEVAKLTCKPEYAYGSAGSP---PDVPPDATLIFEVELVACRPRKGSSLGSVSEER 135 (139)
Q Consensus 76 ~l~~m~~Ge~~~~~ip~~~ayg~~g~~---~~i~~~~~l~~~v~l~~v~~~~~~~~~~~~~~~ 135 (139)
....+|+||.+.+.+ -+-+|.-+|+. ..|----.|.-+-+.+.++..+-+.+.+++.+.
T Consensus 276 l~a~LkPge~Ai~V~-gdGaySFKGSGyVRGGIfDRiql~Qdg~~~~FRD~dy~rl~~l~AdG 337 (482)
T COG3901 276 LRARLKPGEHAIVVA-GDGAYSFKGSGYVRGGIFDRIQLKQDGQGFRFRDSDYTRLYDLAADG 337 (482)
T ss_pred HHhhcCCCceEEEEE-cccceeeccCceeecccceeeeeeecCcceeEeccccchhhhhhhcC
Confidence 899999999999888 55556555431 122111123333333445554444444444443
No 37
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=25.03 E-value=1.1e+02 Score=17.49 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCCEEEEEEcCCCc
Q 032535 73 WDIALRSMKVGEVAKLTCKPEYA 95 (139)
Q Consensus 73 ~~~~l~~m~~Ge~~~~~ip~~~a 95 (139)
..++|..|+.|+...+.+....+
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a 38 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGF 38 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccH
Confidence 67899999999999988765443
No 38
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.34 E-value=1.2e+02 Score=17.43 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=18.2
Q ss_pred HHHHHhcCCCCCEEEEEEcCCC
Q 032535 73 WDIALRSMKVGEVAKLTCKPEY 94 (139)
Q Consensus 73 ~~~~l~~m~~Ge~~~~~ip~~~ 94 (139)
..++|..|..|+...+.+.-..
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~ 37 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQ 37 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCch
Confidence 5689999999999999876543
No 39
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=20.70 E-value=4.4e+02 Score=20.95 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEEEEEECCCCcEEeccCCCCeeEEEEeCCC----------cc----hHHHHHHHhcCCCCCEEE
Q 032535 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG----------SV----IRAWDIALRSMKVGEVAK 87 (139)
Q Consensus 28 ~~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~----------~~----~~g~~~~l~~m~~Ge~~~ 87 (139)
..+.||.|.+++-+.. ||-..+.+ .+|.+|.. .+ ..+++.++..|++|-+..
T Consensus 100 ~Lk~GDvVkIDlG~~i--dGY~aD~a------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~ 165 (389)
T TIGR00495 100 ILKEGDVVKIDLGCHI--DGFIALVA------HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNT 165 (389)
T ss_pred CcCCCCEEEEEEEEEE--CCEEEEEE------EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 4566799999999888 77665543 45666631 12 245667888888887543
No 40
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.51 E-value=1e+02 Score=17.98 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=14.4
Q ss_pred HHHHHHHh--cCCCCCEEEEE
Q 032535 71 RAWDIALR--SMKVGEVAKLT 89 (139)
Q Consensus 71 ~g~~~~l~--~m~~Ge~~~~~ 89 (139)
-|++++|. |.+.|+.+.|.
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 43 LGVEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred CCHHHHHHHcCCCCCCEEEEc
Confidence 36888886 66889988764
No 41
>PRK12450 foldase protein PrsA; Reviewed
Probab=20.06 E-value=82 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=22.7
Q ss_pred EEEeCCCcchHHHHHHHhcCCCCCEEEEE
Q 032535 61 SFELGKGSVIRAWDIALRSMKVGEVAKLT 89 (139)
Q Consensus 61 ~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ 89 (139)
.|.-+...+++.|.+|+..|++|+...++
T Consensus 194 ~f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 194 TFDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred cccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 34444557999999999999999986544
No 42
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=20.05 E-value=1.5e+02 Score=16.70 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHhcCCCCCEEEEEEcCCCcc
Q 032535 73 WDIALRSMKVGEVAKLTCKPEYAY 96 (139)
Q Consensus 73 ~~~~l~~m~~Ge~~~~~ip~~~ay 96 (139)
+.++|..|..|+...+.+....+.
T Consensus 17 ~~~~l~~l~~G~~l~v~~d~~~~~ 40 (70)
T PF01206_consen 17 AKKALKELPPGEVLEVLVDDPAAV 40 (70)
T ss_dssp HHHHHHTSGTT-EEEEEESSTTHH
T ss_pred HHHHHHhcCCCCEEEEEECCccHH
Confidence 668899999999999998766543
Done!