Query 032536
Match_columns 139
No_of_seqs 114 out of 1076
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02642 copper, zinc superoxi 100.0 4.2E-42 9.1E-47 258.9 16.2 127 1-132 1-127 (164)
2 PLN02386 superoxide dismutase 100.0 6.9E-42 1.5E-46 255.4 15.9 119 10-131 2-120 (152)
3 cd00305 Cu-Zn_Superoxide_Dismu 100.0 3.7E-38 8E-43 233.1 15.8 118 10-131 1-119 (144)
4 KOG0441 Cu2+/Zn2+ superoxide d 100.0 8.7E-37 1.9E-41 226.2 13.7 119 11-132 3-123 (154)
5 PRK15388 Cu/Zn superoxide dism 100.0 4.2E-36 9.2E-41 228.6 15.1 118 8-131 24-151 (177)
6 PF00080 Sod_Cu: Copper/zinc s 100.0 1.8E-35 3.9E-40 217.1 13.7 118 12-132 1-121 (142)
7 PRK10290 superoxide dismutase; 100.0 9.3E-35 2E-39 220.8 14.8 106 19-131 34-148 (173)
8 PLN02957 copper, zinc superoxi 100.0 1.8E-34 3.8E-39 228.7 14.8 111 10-132 81-191 (238)
9 COG2032 SodC Cu/Zn superoxide 100.0 3.5E-32 7.5E-37 206.3 13.5 117 11-131 30-154 (179)
10 KOG4656 Copper chaperone for s 100.0 3.2E-31 7E-36 204.8 6.3 109 12-131 84-192 (247)
11 PF07452 CHRD: CHRD domain; I 84.4 6.7 0.00015 27.1 6.9 39 21-60 19-58 (119)
12 smart00754 CHRD A domain in th 82.4 9.2 0.0002 26.6 7.0 36 21-56 19-54 (118)
13 PF07731 Cu-oxidase_2: Multico 51.3 18 0.00039 25.2 2.9 23 36-58 42-64 (138)
14 PF08896 DUF1842: Domain of un 45.2 73 0.0016 22.7 5.2 37 8-44 17-55 (114)
15 PF07495 Y_Y_Y: Y_Y_Y domain; 41.6 27 0.00059 21.1 2.3 19 39-57 30-48 (66)
16 PF15357 SEEK1: Psoriasis susc 31.1 24 0.00053 25.5 0.9 31 66-96 33-63 (149)
17 PF09912 DUF2141: Uncharacteri 28.9 59 0.0013 22.7 2.6 20 37-56 42-61 (112)
18 COG5637 Predicted integral mem 24.5 1E+02 0.0022 24.2 3.3 28 21-48 151-178 (217)
19 COG2132 SufI Putative multicop 22.6 79 0.0017 27.1 2.7 23 36-58 365-387 (451)
20 KOG1783 Small nuclear ribonucl 20.8 51 0.0011 21.9 0.9 14 119-132 11-24 (77)
No 1
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=4.2e-42 Score=258.95 Aligned_cols=127 Identities=55% Similarity=0.919 Sum_probs=117.6
Q ss_pred CCccccccceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCCCCCCCCCCccCCCCCCCC
Q 032536 1 METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGA 80 (139)
Q Consensus 1 ~~~~~~~~~~~Ava~l~~~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~~c~saGgHfnP~~~~hg~ 80 (139)
||.|. +..+|+|+|++.++++|+|+|+|..++.++|+++|+||+||+|+|||||+|||+++|+|||+||||.+..||.
T Consensus 1 ~~~~~--~~~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~ 78 (164)
T PLN02642 1 MEAPR--GNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP 78 (164)
T ss_pred CCccC--CCeeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCC
Confidence 55543 5578999999888899999999987667999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEee
Q 032536 81 PSDNERHTGDLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRLV 132 (139)
Q Consensus 81 p~~~~~h~GDLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~~ 132 (139)
|++..||+||||||+++++|++++++++++++|. +.++|+|||||||..
T Consensus 79 ~~~~~rH~GDLgNi~a~~~G~a~~~~~~~~i~L~---g~~~iiGRalVVHa~ 127 (164)
T PLN02642 79 PNEEERHAGDLGNILAGSDGVAEILIKDKHIPLS---GQYSILGRAVVVHAD 127 (164)
T ss_pred CCcCCCcccccCCEEECCCCeEEEEEEcCceecC---CCCCcCCcEEEEecc
Confidence 9999999999999999999999999999999997 468999999999963
No 2
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=6.9e-42 Score=255.43 Aligned_cols=119 Identities=53% Similarity=0.911 Sum_probs=113.4
Q ss_pred eeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032536 10 VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTG 89 (139)
Q Consensus 10 ~~Ava~l~~~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~~c~saGgHfnP~~~~hg~p~~~~~h~G 89 (139)
++|+|.|++...+.|+|+|+|.+++.+.|+++|+||+||+|+|||||+|||+++|+|||+||||.+.+|+.|++..||+|
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G 81 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG 81 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence 57999999987899999999987677999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEe
Q 032536 90 DLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRL 131 (139)
Q Consensus 90 DLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~ 131 (139)
|||||+++++|++++++++++++|. ++++|+|||||||.
T Consensus 82 DLgNi~~~~~G~a~~~~~~~~~~L~---g~~~i~GrslVIHa 120 (152)
T PLN02386 82 DLGNVTVGDDGTATFTIVDKQIPLT---GPNSIVGRAVVVHA 120 (152)
T ss_pred cccCEEECCCCeEEEEEECCceEeC---CCCccCCcEEEEEc
Confidence 9999999999999999999999997 56899999999996
No 3
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=3.7e-38 Score=233.10 Aligned_cols=118 Identities=48% Similarity=0.817 Sum_probs=110.7
Q ss_pred eeEEEEEcC-CCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 032536 10 VKAVALISG-ATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (139)
Q Consensus 10 ~~Ava~l~~-~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~~c~saGgHfnP~~~~hg~p~~~~~h~ 88 (139)
.+|+|.|++ ++++.|+|+|+|.++ .++|+++++|||||+|+|||||+|||+++|+|+|+||||.+..|+.|++..||+
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~ 79 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHA 79 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCC
Confidence 368999986 457999999999987 699999999999999999999999999999999999999999999999999999
Q ss_pred CccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEe
Q 032536 89 GDLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRL 131 (139)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~ 131 (139)
||||||+++++|++++++++++++|++ .++++|||||||.
T Consensus 80 GDLgni~~~~~G~~~~~~~~~~~~l~~---~~~iiGrsivVH~ 119 (144)
T cd00305 80 GDLGNIVADKDGVATVSVLDPLISLKG---GNSIIGRSLVVHA 119 (144)
T ss_pred CcCCCEEECCCCeEEEEEEeCcEEcCC---CCCcCCcEEEEec
Confidence 999999999999999999999999984 3799999999995
No 4
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-37 Score=226.20 Aligned_cols=119 Identities=45% Similarity=0.752 Sum_probs=112.1
Q ss_pred eEEEEEcCCC-CeEEEEEEEEc-CCCcEEEEEEEecCCCCeeeEEEeCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 032536 11 KAVALISGAT-SVKGSLHFVQG-PNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (139)
Q Consensus 11 ~Ava~l~~~~-~v~G~v~f~q~-~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~~c~saGgHfnP~~~~hg~p~~~~~h~ 88 (139)
+|+|+|+++. +|.|+|.|+|. +...+.|++.++||+||.|+||||||||.+++|+|||+||||.+.+||.|.++.||+
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~ 82 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHV 82 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccccc
Confidence 7899999865 79999999994 444899999999999999999999999999999999999999999999999999999
Q ss_pred CccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEee
Q 032536 89 GDLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRLV 132 (139)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~~ 132 (139)
||||||.++++|.+..++.|..++|+ .+++|+|||+|||.-
T Consensus 83 gdlGnv~~~~~G~~~~~~~d~~i~l~---g~~sivgrs~vvHa~ 123 (154)
T KOG0441|consen 83 GDLGNVDAKDDGVISRVFGDSVITLS---GPNSIVGRSVVVHAG 123 (154)
T ss_pred ccccccccCCCceEEEEEccceEEEe---eccccceeEEEEecc
Confidence 99999999999999999999999998 568999999999974
No 5
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=4.2e-36 Score=228.57 Aligned_cols=118 Identities=28% Similarity=0.482 Sum_probs=102.4
Q ss_pred cceeEEEEE-cCCCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCC----C----CCCCCCCccCCCC-C
Q 032536 8 ATVKAVALI-SGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN----G----CNSTGPHFNPLKK-D 77 (139)
Q Consensus 8 ~~~~Ava~l-~~~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~----~----c~saGgHfnP~~~-~ 77 (139)
.+..+...+ ++++++.|+|+|+|..++ ++|+++++|||||+|+|||||+|||+. + |.|||+||||++. .
T Consensus 24 ~~~~~~~~~~~~~g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~ 102 (177)
T PRK15388 24 LTVKMNDALSSGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGK 102 (177)
T ss_pred ccEEEEEeecCCCCceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCC
Confidence 344444433 357889999999999766 899999999999999999999999973 2 8999999999997 7
Q ss_pred CCCCCCCCCCCCccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEe
Q 032536 78 HGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRL 131 (139)
Q Consensus 78 hg~p~~~~~h~GDLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~ 131 (139)
|+.|++..+|+||||||+++++|++++.+++++++ ..++|+|||||||.
T Consensus 103 Hg~p~~~~~H~GDLpNi~a~~dG~a~~~~~~~~~~-----~~~~i~GralVIHa 151 (177)
T PRK15388 103 HLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLK-----SLSELKGHSLMIHK 151 (177)
T ss_pred CCCCCCCCCCcCcCcCEEECCCccEEEEEEeCCcc-----cCcccCCcEEEEEC
Confidence 99998888999999999999999999999998764 23699999999995
No 6
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=1.8e-35 Score=217.12 Aligned_cols=118 Identities=39% Similarity=0.627 Sum_probs=108.6
Q ss_pred EEEEEcC-CCCeEEEEEEEEcCCC-cEEEEEEEecCCCCeeeEEEeCCCCC-CCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 032536 12 AVALISG-ATSVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHALGDT-TNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (139)
Q Consensus 12 Ava~l~~-~~~v~G~v~f~q~~~g-~~~v~~~l~GL~~G~hg~HIHe~Gd~-s~~c~saGgHfnP~~~~hg~p~~~~~h~ 88 (139)
|+|+|++ +++|+|+|+|+|..++ .+.|+++++||++|.|+|||||+|+| +++|.++|+||||.+..|+.|+...|++
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 8999985 5789999999999844 59999999999999999999999999 7889999999999999999998888999
Q ss_pred CccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEee
Q 032536 89 GDLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRLV 132 (139)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~~ 132 (139)
|||++++++++|.++.+|+++.++|++ .++|+|||||||-.
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g---~~siiGRSiVIH~~ 121 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSG---PNSIIGRSIVIHSG 121 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSS---TTBHTTSEEEEESS
T ss_pred ccccccccccCCceEEEEEeeeEeccC---CccccCCEEEEEeC
Confidence 999999999999999999999999984 45999999999964
No 7
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=9.3e-35 Score=220.75 Aligned_cols=106 Identities=27% Similarity=0.517 Sum_probs=95.9
Q ss_pred CCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCC----CC----CCCCCCCccCCCC-CCCCCCCCCCCCC
Q 032536 19 ATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTT----NG----CNSTGPHFNPLKK-DHGAPSDNERHTG 89 (139)
Q Consensus 19 ~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s----~~----c~saGgHfnP~~~-~hg~p~~~~~h~G 89 (139)
.+++.|+++|+|..++ ++|+++++|||||+|+|||||+|||+ ++ |.|||+||||.+. .|+.|+. .+|+|
T Consensus 34 ~g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~G 111 (173)
T PRK10290 34 VGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHLG 111 (173)
T ss_pred CCceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCcC
Confidence 5789999999999766 99999999999999999999999997 33 8999999999998 7888875 68999
Q ss_pred ccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEe
Q 032536 90 DLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRL 131 (139)
Q Consensus 90 DLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~ 131 (139)
|||||+++++|++++++++++++. .++|+|||||||.
T Consensus 112 DL~ni~a~~dG~a~~~~~~~~~~~-----~~~i~GralVIH~ 148 (173)
T PRK10290 112 DLPALVVNNDGKATDPVIAPRLKS-----LDEVKDKALMVHV 148 (173)
T ss_pred cccCEEECCCeeEEEEEEeCCccC-----ccccCCcEEEEEC
Confidence 999999999999999999987653 3699999999996
No 8
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=1.8e-34 Score=228.74 Aligned_cols=111 Identities=31% Similarity=0.480 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032536 10 VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTG 89 (139)
Q Consensus 10 ~~Ava~l~~~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~~c~saGgHfnP~~~~hg~p~~~~~h~G 89 (139)
.+|+|.+++. .++|+|+|+|.+++.+.|+++|+|||||.|+|||||+|||+++|.|||+||||.+.+|+ .+|+|
T Consensus 81 ~~av~~~~g~-~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~G 154 (238)
T PLN02957 81 SAAVAEFKGP-DIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPLG 154 (238)
T ss_pred ceEEEEecCC-ceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCCC
Confidence 4689999875 59999999998766699999999999999999999999999999999999999999997 58999
Q ss_pred ccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEee
Q 032536 90 DLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRLV 132 (139)
Q Consensus 90 DLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~~ 132 (139)
|||||.++++|++++++.++.++| ++|+|||||||..
T Consensus 155 DLgni~~~~~G~a~~~~~~~~~~l------~~iiGrs~vih~~ 191 (238)
T PLN02957 155 DLGTLEADENGEATFSGTKEKLKV------WDLIGRSLAVYAT 191 (238)
T ss_pred ccCCEEeCCCceEEEEEECCCcCc------cccCCcEEEEEeC
Confidence 999999999999999999988866 4999999999963
No 9
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-32 Score=206.26 Aligned_cols=117 Identities=32% Similarity=0.516 Sum_probs=107.4
Q ss_pred eEEEEEc-CCCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCC------CCCCCCCCccCC-CCCCCCCC
Q 032536 11 KAVALIS-GATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN------GCNSTGPHFNPL-KKDHGAPS 82 (139)
Q Consensus 11 ~Ava~l~-~~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~------~c~saGgHfnP~-~~~hg~p~ 82 (139)
++.+.+. +.++..|+|++++...+ +.++..+.+|+||+|+|||||+|+|++ +|.||||||||. ..+|+.|+
T Consensus 30 ~~~~~~~~~~G~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~ 108 (179)
T COG2032 30 KANAVLVDGTGKDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPN 108 (179)
T ss_pred cceeeccCCCCceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCC
Confidence 5556665 46778999999999877 999999999999999999999999987 599999999999 67999999
Q ss_pred CCCCCCCccCceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEe
Q 032536 83 DNERHTGDLGNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRL 131 (139)
Q Consensus 83 ~~~~h~GDLgni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~ 131 (139)
++.+|+|||+||++++||.++..+++++++|. +..++.|||||||.
T Consensus 109 ~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~---~l~~v~G~alvIHa 154 (179)
T COG2032 109 ADGGHAGDLPNLFVNADGKATLPVLAPRLKLK---GLLEVKGRALVIHA 154 (179)
T ss_pred CCCCCcCcCcceEECCCCcEEEEEecccceec---cccccCCeEEEEEc
Confidence 99999999999999999999999999999996 56799999999996
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-31 Score=204.80 Aligned_cols=109 Identities=42% Similarity=0.717 Sum_probs=100.8
Q ss_pred EEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcc
Q 032536 12 AVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDL 91 (139)
Q Consensus 12 Ava~l~~~~~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe~Gd~s~~c~saGgHfnP~~~~hg~p~~~~~h~GDL 91 (139)
|++.+++...|.|.|||.|.....++|++++.||+||.|++|||||||.+++|+|+|.||||+..+||+|+. |||
T Consensus 84 t~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~-----gDL 158 (247)
T KOG4656|consen 84 TVAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNE-----GDL 158 (247)
T ss_pred HHHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCc-----ccc
Confidence 455666666899999999999888999999999999999999999999999999999999999999999865 999
Q ss_pred CceEECCCceEEEEEEeCeEEeeccCCCccccceEEEEEe
Q 032536 92 GNIVAGPDGVAEVSIADRMVNGLINKNFRSVHCRLYEIRL 131 (139)
Q Consensus 92 gni~~~~~G~~~~~~~d~~l~L~~~~~~~sIiGRSiVI~~ 131 (139)
||+.+|++|++.++..|..|+. |++||||+||.-
T Consensus 159 Gn~~ad~nGraf~s~~de~Lkv------wdlIGRsvVi~k 192 (247)
T KOG4656|consen 159 GNNRADKNGRAFFSAPDEKLKV------WDLIGRSVVISK 192 (247)
T ss_pred cccccccCCcEEEecccccccH------hhhhceeEEEec
Confidence 9999999999999999999976 499999999964
No 11
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=84.35 E-value=6.7 Score=27.11 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=31.6
Q ss_pred CeEEEEEEEEcCCC-cEEEEEEEecCCCCeeeEEEeCCCCC
Q 032536 21 SVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHALGDT 60 (139)
Q Consensus 21 ~v~G~v~f~q~~~g-~~~v~~~l~GL~~G~hg~HIHe~Gd~ 60 (139)
.-.|++.|+-..++ .+.+++.++||....-.+|||. +..
T Consensus 19 ~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~-~~~ 58 (119)
T PF07452_consen 19 SASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ-GAA 58 (119)
T ss_pred CCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc-CCC
Confidence 45789999888765 6889999999976679999998 443
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=82.39 E-value=9.2 Score=26.61 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=29.0
Q ss_pred CeEEEEEEEEcCCCcEEEEEEEecCCCCeeeEEEeC
Q 032536 21 SVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHA 56 (139)
Q Consensus 21 ~v~G~v~f~q~~~g~~~v~~~l~GL~~G~hg~HIHe 56 (139)
.-.|.+.|+-..+..+..++.++||..-.-+.|||+
T Consensus 19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 458999998876567888999999986433899998
No 13
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=51.32 E-value=18 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.6
Q ss_pred EEEEEEEecCCCCeeeEEEeCCC
Q 032536 36 THVKGKITGLKPGLHGFHIHALG 58 (139)
Q Consensus 36 ~~v~~~l~GL~~G~hg~HIHe~G 58 (139)
..+++.|.+.....|.||+|-+-
T Consensus 42 ~~v~~~l~N~~~~~Hp~HlHG~~ 64 (138)
T PF07731_consen 42 DVVEIVLQNNGSMPHPFHLHGHS 64 (138)
T ss_dssp SEEEEEEEECTTSSEEEEETTSE
T ss_pred CEEEEEEECCCCCccceEEEeeE
Confidence 36788888888889999999653
No 14
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=45.22 E-value=73 Score=22.69 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=25.9
Q ss_pred cceeEEEEEc--CCCCeEEEEEEEEcCCCcEEEEEEEec
Q 032536 8 ATVKAVALIS--GATSVKGSLHFVQGPNGVTHVKGKITG 44 (139)
Q Consensus 8 ~~~~Ava~l~--~~~~v~G~v~f~q~~~g~~~v~~~l~G 44 (139)
++.-..+.+. ++.+|+|.++++|...-.+.|..++.|
T Consensus 17 ap~L~L~L~V~~~~~~VsG~a~ItQat~ppl~~~s~v~G 55 (114)
T PF08896_consen 17 APVLTLDLLVNTPDKSVSGRARITQATNPPLNFHSDVWG 55 (114)
T ss_pred CcEEEEEEEEeCCCCEEEeEEEEEEecCCCcceEEEeEE
Confidence 3444444442 567899999999988666777777764
No 15
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=41.56 E-value=27 Score=21.13 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.3
Q ss_pred EEEEecCCCCeeeEEEeCC
Q 032536 39 KGKITGLKPGLHGFHIHAL 57 (139)
Q Consensus 39 ~~~l~GL~~G~hg~HIHe~ 57 (139)
.++++.||||.|-|.|...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 7788999999999998863
No 16
>PF15357 SEEK1: Psoriasis susceptibility 1 candidate 1
Probab=31.13 E-value=24 Score=25.45 Aligned_cols=31 Identities=32% Similarity=0.573 Sum_probs=24.5
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCccCceEE
Q 032536 66 STGPHFNPLKKDHGAPSDNERHTGDLGNIVA 96 (139)
Q Consensus 66 saGgHfnP~~~~hg~p~~~~~h~GDLgni~~ 96 (139)
..-+|.||....|-.|.+.-.|+|||-.+..
T Consensus 33 t~pph~npdrlch~e~anhfwhagdlq~~ts 63 (149)
T PF15357_consen 33 TRPPHINPDRLCHMEPANHFWHAGDLQTMTS 63 (149)
T ss_pred ccCCCCCcchhhcccccccccccchhhhhhh
Confidence 4458999998888878788899999965543
No 17
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=28.87 E-value=59 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.281 Sum_probs=17.2
Q ss_pred EEEEEEecCCCCeeeEEEeC
Q 032536 37 HVKGKITGLKPGLHGFHIHA 56 (139)
Q Consensus 37 ~v~~~l~GL~~G~hg~HIHe 56 (139)
.+++++.+||||.|++-+..
T Consensus 42 ~~~~~f~~lp~G~YAi~v~h 61 (112)
T PF09912_consen 42 TVTITFEDLPPGTYAIAVFH 61 (112)
T ss_pred cEEEEECCCCCccEEEEEEE
Confidence 57888999999999998873
No 18
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=24.46 E-value=1e+02 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=22.6
Q ss_pred CeEEEEEEEEcCCCcEEEEEEEecCCCC
Q 032536 21 SVKGSLHFVQGPNGVTHVKGKITGLKPG 48 (139)
Q Consensus 21 ~v~G~v~f~q~~~g~~~v~~~l~GL~~G 48 (139)
.-+|.|+|+..++..+.|.+.|+=-+||
T Consensus 151 ~NsG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 151 ENSGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred CCCccEEeeeCCCCceEEEEEEEecCCc
Confidence 3579999999997678899998865664
No 19
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.63 E-value=79 Score=27.09 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEEEEecCCCCeeeEEEeCCC
Q 032536 36 THVKGKITGLKPGLHGFHIHALG 58 (139)
Q Consensus 36 ~~v~~~l~GL~~G~hg~HIHe~G 58 (139)
....+++.+..++.|.||+|-..
T Consensus 365 ~~~~~~i~n~~~~~HP~HlHg~~ 387 (451)
T COG2132 365 TRERWVLTNDTPMPHPFHLHGHF 387 (451)
T ss_pred CEEEEEEECCCCCccCeEEcCce
Confidence 46788899999999999999654
No 20
>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]
Probab=20.84 E-value=51 Score=21.89 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=11.8
Q ss_pred CccccceEEEEEee
Q 032536 119 FRSVHCRLYEIRLV 132 (139)
Q Consensus 119 ~~sIiGRSiVI~~~ 132 (139)
...||||.|+|-|.
T Consensus 11 l~~iiGr~V~VKl~ 24 (77)
T KOG1783|consen 11 LKAIIGRTVVVKLN 24 (77)
T ss_pred HHHHhCCeEEEEec
Confidence 36899999999875
Done!