BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032537
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 111 bits (277), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 353 LRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVA 412
Query: 73 YFFDAAVKLTVKIKSETQ-GTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+S+T LK+F +Q+ + +VE +A FP G
Sbjct: 413 HFIHRGIELTLQIQSDTGVAATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPGL 470
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 108 bits (271), Expect = 8e-25, Method: Composition-based stats.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V F
Sbjct: 375 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 434
Query: 76 DAAVKLTVKIKSETQGTKLKDFVA-TTQSANFQSEIAKRCHDVEEYAKQFPTIGFEK 131
D V + +++KS+T KL+DF + + + +A VE++A+ FP GF++
Sbjct: 435 DEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 489
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 105 bits (262), Expect = 8e-24, Method: Composition-based stats.
Identities = 58/120 (48%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA
Sbjct: 357 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVA 416
Query: 73 YFFDAAVKLTVKIKSE--TQGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+S T+ T LK+F QS +A +VE +A F G
Sbjct: 417 HFIHRGIELTLQIQSHXATKAT-LKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGL 475
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 362 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
Query: 73 YFFDAAVKLTVKIKSET-QGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 422 HFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 349 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVA 408
Query: 73 YFFDAAVKLTVKIKSET-QGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 409 HFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 467
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 362 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
Query: 73 YFFDAAVKLTVKIKSET-QGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 422 HFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 362 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
Query: 73 YFFDAAVKLTVKIKSET-QGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 422 HFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEE 66
LF +G+ G E+ L+AV I NKN +P D V GIR+GTPA+T+RGF E
Sbjct: 313 LFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPE 372
Query: 67 DFAKVAYFFDAAV 79
+ VA D A+
Sbjct: 373 EMPLVAELIDRAL 385
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
G+ G E+ L++V I NKNT+P D V GIR+GTPA T+RGF E+ F +VA
Sbjct: 325 GLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVAKII 384
Query: 76 DAAVK 80
A+K
Sbjct: 385 SLALK 389
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVA 72
+DG E +L V I N+N VP D MV G+R+GTPAL +RGF + +F +VA
Sbjct: 349 LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVA 404
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKNTIPYDPESPGVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKV 71
F + G + L I ANKNTVPG++ S + G+R+GTPALT+RGF E++ V
Sbjct: 319 FLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEXEIV 378
Query: 72 AYF 74
+ +
Sbjct: 379 SNY 381
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G+ G++VE+ LE I NKN +P D + GIR+GTPA T+RGF +F +V
Sbjct: 330 KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVG 387
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL + QQ + G EKVL+ V I NK T+P D S V GIR+GT A+T+RGF
Sbjct: 312 LLLVDLRPQQ-LTGKTAEKVLDEVGITVNKATIPYDPESPFVTSGIRIGTAAVTTRGFGL 370
Query: 66 EDFAKVAYFFDAAVK 80
E+ ++A +K
Sbjct: 371 EEMDEIAAIIGLVLK 385
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEE 66
LF + + G + L +I NKN+VP D S V GIR+GTPA+T RGF E
Sbjct: 318 LFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEA 377
Query: 67 DFAKVA 72
+ ++A
Sbjct: 378 EAKELA 383
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEE 66
LF + + G + L +I NKN+VP D S V GIR+GTPA+T RGF E
Sbjct: 318 LFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEA 377
Query: 67 DFAKVA 72
+ ++A
Sbjct: 378 EAKELA 383
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEE 66
LF + + G + L +I NKN+VP D S V GIR+GTPA+T RGF E
Sbjct: 318 LFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEA 377
Query: 67 DFAKVA 72
+ ++A
Sbjct: 378 EAKELA 383
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+ + G + L +I NKN+VP D S V GIR+G+PA+T RGF E + ++A
Sbjct: 329 KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELA 386
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 95 KDFVATTQSANFQSEIAKRC--HDVEEYAKQFPTIGF 129
+ FVATT + N ++EI+ H +E+YAKQ P I
Sbjct: 75 QQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDL 111
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 10 AKMFHQQGI---DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSR----- 61
A +++Q GI +++++ E + NT+P D++ ++P G PAL +
Sbjct: 225 ASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPP--YTGNPALKNSTPDLV 282
Query: 62 ---GFVEEDFAKVAYFFD 76
GF+ D V+ +D
Sbjct: 283 DDGGFIPTDLNMVSIKYD 300
>pdb|3HGX|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase K42a Mutant In Complex With Salicylate
And Pyruvate
pdb|3HGX|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase K42a Mutant In Complex With Salicylate
And Pyruvate
Length = 101
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 20 GSRVEKVLEAVHIAANKNTVPGD--VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77
G R++ V A AA++ +P V+AM+P R FVE FA++ +++
Sbjct: 29 GRRMDYVKAASRFAASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWY-- 86
Query: 78 AVKLTVKIKSETQGT 92
+ +K +T+G
Sbjct: 87 -IAEQIKYWRQTRGA 100
>pdb|3KIZ|A Chain A, Crystal Structure Of Putative
Phosphoribosylformylglycinamidine Cyclo- Ligase
(Yp_676759.1) From Cytophaga Hutchinsonii Atcc 33406 At
1.50 A Resolution
pdb|3KIZ|B Chain B, Crystal Structure Of Putative
Phosphoribosylformylglycinamidine Cyclo- Ligase
(Yp_676759.1) From Cytophaga Hutchinsonii Atcc 33406 At
1.50 A Resolution
Length = 394
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 23 VEKVLEAVHIAANKNTVPGDVSAMVPGG 50
V+ +L + I NKN +PG+V A + G
Sbjct: 100 VDNILLSSTIGRNKNLIPGEVLAAIING 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,770,178
Number of Sequences: 62578
Number of extensions: 127294
Number of successful extensions: 338
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 30
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)