BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032537
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria
pringlei PE=2 SV=1
Length = 517
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/124 (87%), Positives = 113/124 (91%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY
Sbjct: 394 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYL 453
Query: 75 FDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETM 134
FD AVKL VKIK E QGTKLKDFVA QS+ FQSEI+K HDVEEYAKQFPTIGFEKETM
Sbjct: 454 FDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETM 513
Query: 135 KYKS 138
KYK+
Sbjct: 514 KYKN 517
>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria
pringlei PE=2 SV=1
Length = 517
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/124 (84%), Positives = 112/124 (90%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+GIDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF
Sbjct: 394 NKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 453
Query: 75 FDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETM 134
FD AVKL VKIK E +GTKLKDFV +S+ QSEI+K HDVEEYAKQFPTIGFEKETM
Sbjct: 454 FDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETM 513
Query: 135 KYKS 138
KYK+
Sbjct: 514 KYKN 517
>sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum
PE=2 SV=1
Length = 518
Score = 215 bits (548), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 115/125 (92%), Gaps = 1/125 (0%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA F
Sbjct: 394 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADF 453
Query: 75 FDAAVKLTVKIKSETQGTKLKDFVATTQ-SANFQSEIAKRCHDVEEYAKQFPTIGFEKET 133
FDAAVK+ VK+K+ETQGTKLKDFVAT + SA +SEIAK HDVEEYAKQFPTIGFEKET
Sbjct: 454 FDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKET 513
Query: 134 MKYKS 138
MKYK+
Sbjct: 514 MKYKN 518
>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis
thaliana GN=SHM1 PE=1 SV=1
Length = 517
Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/124 (80%), Positives = 113/124 (91%), Gaps = 1/124 (0%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+GIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +F
Sbjct: 394 KGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYF 453
Query: 76 DAAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRCHDVEEYAKQFPTIGFEKETM 134
D AV + +K+KSE QGTKLKDFV+ +S++ QSEIAK H+VEE+AKQFPTIGFEKETM
Sbjct: 454 DKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETM 513
Query: 135 KYKS 138
KYK+
Sbjct: 514 KYKN 517
>sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum
PE=1 SV=1
Length = 518
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 110/123 (89%), Gaps = 1/123 (0%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+GIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +
Sbjct: 394 NKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEY 453
Query: 75 FDAAVKLTVKIKSETQGTKLKDFVATTQSANF-QSEIAKRCHDVEEYAKQFPTIGFEKET 133
FDAAV L +K+K+E++GTKLKDFV Q++++ QSEI+K HDVEE+AKQFPTIGFEK T
Sbjct: 454 FDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKAT 513
Query: 134 MKY 136
MKY
Sbjct: 514 MKY 516
>sp|Q3SZ20|GLYM_BOVIN Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus
GN=SHMT2 PE=2 SV=1
Length = 504
Score = 115 bits (288), Expect = 8e-26, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV F
Sbjct: 389 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFI 448
Query: 76 DAAVKLTVKIKSETQGTKLKDFVA-TTQSANFQSEIAKRCHDVEEYAKQFPTIGFE 130
D V + +++KS+T TKL+DF + + ++A VE++A+ FP GF+
Sbjct: 449 DEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502
>sp|Q60V73|GLYC_CAEBR Serine hydroxymethyltransferase OS=Caenorhabditis briggsae
GN=mel-32 PE=3 SV=3
Length = 511
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
G++G+R E +L+ HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV F
Sbjct: 396 GVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIH 455
Query: 77 AAVKLTVKIKSETQGTKLKDFVA-TTQSANFQSEIAKRCHDVEEYAKQFPTIG 128
V++ K +E G LKDF A T + F+ E+A+ VEE++ +F G
Sbjct: 456 EGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507
>sp|Q7S5N8|GLYM_NEUCR Putative serine hydroxymethyltransferase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU05805 PE=3 SV=1
Length = 527
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 11/121 (9%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
QGIDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDFA+VA
Sbjct: 400 QGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADII 459
Query: 76 DAAVKLTVKIK-----------SETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQF 124
D AV + V+I +E ++K F+ + EI + +VE + +
Sbjct: 460 DRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTY 519
Query: 125 P 125
P
Sbjct: 520 P 520
>sp|P34896|GLYC_HUMAN Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1
PE=1 SV=1
Length = 483
Score = 110 bits (275), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 363 LRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVA 422
Query: 73 YFFDAAVKLTVKIKSETQGTK--LKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+S+T G + LK+F +Q+ + +VE +A FP G
Sbjct: 423 HFIHRGIELTLQIQSDT-GVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPGL 480
>sp|P50432|GLYC_CAEEL Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32
PE=1 SV=2
Length = 507
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
G++G+R E VL+ HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV F
Sbjct: 392 GVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIH 451
Query: 77 AAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRCHDVEEYAKQFPTIGFE 130
V++ K +E G LKDF + T++ F+ ++A VEE++ +F G E
Sbjct: 452 EGVQIAKKYNAEA-GKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNE 505
>sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens
GN=SHMT2 PE=1 SV=3
Length = 504
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V F
Sbjct: 389 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 448
Query: 76 DAAVKLTVKIKSETQGTKLKDFVA-TTQSANFQSEIAKRCHDVEEYAKQFPTIGFEK 131
D V + +++KS+T KL+DF + + + +A VE++A+ FP GF++
Sbjct: 449 DEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503
>sp|Q5RFK5|GLYC_PONAB Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1
PE=2 SV=1
Length = 483
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 363 LRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVA 422
Query: 73 YFFDAAVKLTVKIKSETQGTK--LKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+S+T G + LK+F +Q + VE +A FP G
Sbjct: 423 HFIHRGIELTLQIQSDT-GVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPGL 480
>sp|O13425|GLYM_CANAX Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans
GN=SHM1 PE=3 SV=1
Length = 493
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+ IDG+RVE VLE +IAANKNTVPGDVSA+ P G+R+GTPA+T+RGF E+F KVA
Sbjct: 375 LRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVA 434
Query: 73 YFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCH-DVEEYAKQFPTIG 128
F D AV + +++K++ QG K+ +A+ + +S+ K+ +V + ++P G
Sbjct: 435 EFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491
>sp|Q6FQ44|GLYM_CANGA Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SHM1 PE=3 SV=1
Length = 485
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%), Gaps = 9/118 (7%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF KVA + D
Sbjct: 369 GIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYID 428
Query: 77 AAVKLTVKIKSETQG------TKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG 128
AVKL++ +KS+ +KL F Q + + K +V + FP G
Sbjct: 429 NAVKLSIALKSQESADAKDVRSKLNSF---KQLCDQSEPVQKLAEEVSSWVGTFPVPG 483
>sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1
PE=1 SV=3
Length = 478
Score = 105 bits (262), Expect = 8e-23, Method: Composition-based stats.
Identities = 58/120 (48%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA
Sbjct: 357 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVA 416
Query: 73 YFFDAAVKLTVKIKSE--TQGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+S T+ T LK+F QS +A +VE +A F G
Sbjct: 417 HFIHRGIELTLQIQSHMATKAT-LKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGL 475
>sp|P35623|GLYC_SHEEP Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1
PE=1 SV=3
Length = 484
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA
Sbjct: 363 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVA 422
Query: 73 YFFDAAVKLTVKIKSETQGTK--LKDFVATTQSA-NFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+ + G K LK+F+ A Q + +VE +A FP G
Sbjct: 423 HFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPGL 481
>sp|Q5E9P9|GLYC_BOVIN Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1
PE=2 SV=3
Length = 484
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA
Sbjct: 363 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVA 422
Query: 73 YFFDAAVKLTVKIKSETQGTK--LKDFVATTQSA-NFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LT++I+ + G K LK+F+ A +A +VE +A FP G
Sbjct: 423 HFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPGL 481
>sp|P14519|GLYM_RABIT Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus
cuniculus GN=SHMT2 PE=1 SV=2
Length = 504
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V F
Sbjct: 389 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 448
Query: 76 DAAVKLTVKIKSETQGTKLKDF----VATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
D V + +++K +T KL+DF + +++ +++ +R V+++A+ FP GF
Sbjct: 449 DEGVNIGLEVKRKT--AKLQDFKSFLLKDPETSQHLADLRRR---VQQFARAFPMPGF 501
>sp|Q758F0|GLYM_ASHGO Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SHM1 PE=3 SV=1
Length = 497
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 81/118 (68%), Gaps = 9/118 (7%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
GIDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF +F +VA + +
Sbjct: 381 GIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYIN 440
Query: 77 AAVKLTVKIKSETQGTKLKDFVATTQSANFQS------EIAKRCHDVEEYAKQFPTIG 128
AVKL + +KS+ + KD A T+ A+F+S ++ K ++V ++ Q+P G
Sbjct: 441 EAVKLAIGLKSQ-EPVDAKD--AKTRLAHFKSFCAESEQVTKLANEVADWVAQYPVPG 495
>sp|Q10104|GLYM_SCHPO Serine hydroxymethyltransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=shm2 PE=3 SV=2
Length = 488
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G+DG+RVE++LE V+I+ANKNTVPGD SA++P G+R+GTPA T+RGF E+DF +V
Sbjct: 373 KGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELI 432
Query: 76 DAAVKLTVKIKSET--QG-TKLKDFVATTQSANFQSEIAKRCHDVEEYAKQF 124
D V LT KI +G +K +DF A + SEIAK +V +A +F
Sbjct: 433 DEVVSLTKKINEAALKEGKSKFRDFKAYVGDGSKFSEIAKLKKEVITWAGKF 484
>sp|P07511|GLYC_RABIT Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus
GN=SHMT1 PE=1 SV=2
Length = 484
Score = 103 bits (257), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 363 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVA 422
Query: 73 YFFDAAVKLTVKIKSET-QGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
+F ++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 423 HFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 481
>sp|Q75BQ6|GLYC_ASHGO Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SHM2 PE=3 SV=2
Length = 469
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 82/125 (65%), Gaps = 7/125 (5%)
Query: 3 SWMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRG 62
S M+L+ + ++G+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG
Sbjct: 347 SHMVLVSLR---EKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRG 403
Query: 63 FVEEDFAKVAYFFDAAVKLTVKIKSET--QGTKLKDFVATTQSANFQSEIAKRCHDVEEY 120
EEDFA++ + + AV++ I+ + +LKDF A + EIA+ ++ +
Sbjct: 404 MGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEDGT--DEIAQLAQEIYSW 461
Query: 121 AKQFP 125
+++P
Sbjct: 462 TEEYP 466
>sp|P37292|GLYM_YEAST Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SHM1 PE=1
SV=2
Length = 490
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77
+DG+RVE +L A++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+F++VA + D+
Sbjct: 375 VDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDS 434
Query: 78 AVKLTVKIKSETQGTKLKDFVATTQ---SANFQSEIAKRCHDVEEYAKQFPTIG 128
AVKL +K+ TKL + N SE+A ++ ++ Q+P G
Sbjct: 435 AVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488
>sp|P34898|GLYC_NEUCR Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=for PE=3 SV=2
Length = 480
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
G+DG+RVE +LE ++I NKN VPGD SA+ PGG+R+GTPA+TSRGF E DF KVA F D
Sbjct: 359 GVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVD 418
Query: 77 AAVKLTVKIKSET--QGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFP 125
AVKL +I++ + K KDF A +++ I + ++ ++ FP
Sbjct: 419 EAVKLCKEIQASLPKEANKQKDFKAKIATSDI-PRINELKQEIAAWSNTFP 468
>sp|Q6CLQ5|GLYM_KLULA Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SHM1 PE=3 SV=1
Length = 498
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 81/118 (68%), Gaps = 9/118 (7%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF ++FA+VA + D
Sbjct: 382 GIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYID 441
Query: 77 AAVKLTVKIKSETQGTKLKDFVATTQSANFQ------SEIAKRCHDVEEYAKQFPTIG 128
AVKL + IKS+ + KD A ++ A+F+ ++ + +V ++ +FP G
Sbjct: 442 RAVKLAIGIKSQ-ESPDAKD--ARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496
>sp|O13972|GLYD_SCHPO Probable serine hydroxymethyltransferase, cytosolic
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC24C9.12c PE=3 SV=1
Length = 467
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Query: 3 SWMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRG 62
S M+L+ K +G+DG+R E+VLE ++I NKNTVP D SA P GIR+GTPA+T+RG
Sbjct: 341 SHMVLVDVK---SKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRG 397
Query: 63 FVEEDFAKVAYFFDAAVKLTVKIKSET--QGTKLKDFVATTQSANFQSEIAKRCHDVEEY 120
F E+DF +V + D A+ ++ E KLKDF A E+ + +V E+
Sbjct: 398 FKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEW 457
Query: 121 AKQFP 125
A FP
Sbjct: 458 ASSFP 462
>sp|Q6FUP6|GLYC_CANGA Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SHM2 PE=3 SV=1
Length = 469
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 3 SWMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRG 62
S M+L+ ++G+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG
Sbjct: 347 SHMVLV---SLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRG 403
Query: 63 FVEEDFAKVAYFFDAAVKLTVKIKSET--QGTKLKDFVATTQSANFQSEIAKRCHDVEEY 120
EEDF ++ + D AVK + +S + KLKDF A ++A ++ ++
Sbjct: 404 MGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVDE--IADQLAPLKKEIYDW 461
Query: 121 AKQFP 125
++P
Sbjct: 462 TAEYP 466
>sp|O13426|GLYC_CANAL Serine hydroxymethyltransferase, cytosolic OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SHM2 PE=1 SV=4
Length = 470
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 9/126 (7%)
Query: 3 SWMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRG 62
S M+L+ K + IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG
Sbjct: 348 SHMVLVSLK---DKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRG 404
Query: 63 FVEEDFAKVAYFFDAAVKLTVKIKSET--QGTKLKDFVATTQSANFQSEIAKRCHD-VEE 119
EEDF K+ + D AV +++S+ KLKDF + + SE K D + +
Sbjct: 405 LGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDF---KNAVSGDSEKLKAVRDEIYQ 461
Query: 120 YAKQFP 125
+A FP
Sbjct: 462 WAGSFP 467
>sp|Q54EW1|GLYC2_DICDI Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum
GN=shmt2 PE=3 SV=1
Length = 481
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
QGI GS++EK + HI NKN V GD +A+ PGG+R+G PALTSRG E+DF KV
Sbjct: 368 LRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVV 427
Query: 73 YFFDAAVKLTVKIKSETQGTKLKDF 97
F D VK+++ I+S+ G K+ DF
Sbjct: 428 DFLDRVVKISLDIQSKV-GKKMPDF 451
>sp|P37291|GLYC_YEAST Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SHM2 PE=1
SV=2
Length = 469
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 3 SWMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRG 62
S M+L+ ++G+DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG
Sbjct: 347 SHMVLV---SLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRG 403
Query: 63 FVEEDFAKVAYFFDAAVKLTVKIKSET--QGTKLKDFVATTQSANFQSEIAKRCHDVEEY 120
EEDF ++ + + AV+ +++ +LKDF A + K+ ++ ++
Sbjct: 404 MGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGSDVLNTWKK--EIYDW 461
Query: 121 AKQFP 125
A ++P
Sbjct: 462 AGEYP 466
>sp|Q54Z26|GLYC1_DICDI Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum
GN=shmt1 PE=1 SV=1
Length = 457
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77
+ G++ EK + +I NKN V GD +A+ PGGIR+G+ ALTSRG E DF K+A F D
Sbjct: 350 LTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDR 409
Query: 78 AVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129
V ++++I+ G KL DFV N E+ +VEE++ +F G
Sbjct: 410 IVSISLEIQGRV-GKKLVDFVVEI---NKSKELLDLRKEVEEFSSKFTLPGI 457
>sp|Q98QM2|GLYA_MYCPU Serine hydroxymethyltransferase OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=glyA PE=3 SV=1
Length = 413
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVE 65
LL +F GI G + E +L ++I NKNT+P D S MV GIR+GTPA+T+RGF E
Sbjct: 313 LLIVNVFDSYGITGKKAENILGKINITVNKNTIPFDTNSPMVTSGIRLGTPAMTTRGFKE 372
Query: 66 EDFAKVAYFFDAAVK 80
+F +A A+K
Sbjct: 373 NEFILIARIMVKALK 387
>sp|C4ZH69|GLYA_EUBR3 Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC
33656 / VPI 0990) GN=glyA PE=3 SV=1
Length = 413
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 17 GIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA 72
G+ G +EK+L+A HI ANKNT+P D V GIR+GTPA TSRG E+DF KVA
Sbjct: 325 GLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381
>sp|A7GGI2|GLYA_CLOBL Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1
Length = 413
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|A5I526|GLYA_CLOBH Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3
SV=1
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|A7FWM6|GLYA_CLOB1 Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=glyA PE=3 SV=1
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|C1FTF1|GLYA_CLOBJ Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=glyA PE=3 SV=1
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|B1KXQ5|GLYA_CLOBM Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=glyA PE=3 SV=1
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|C3L181|GLYA_CLOB6 Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
657 / Type Ba4) GN=glyA PE=3 SV=1
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|B1IJJ8|GLYA_CLOBK Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Okra / Type B1) GN=glyA PE=3 SV=1
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G EK+L++V I NKNT+P + +S + GIR+GTPA+T+RGF EE+ K+AY
Sbjct: 321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAY 380
Query: 74 FFDAAVK 80
F + +++
Sbjct: 381 FMNYSIE 387
>sp|B2A3H6|GLYA_NATTJ Serine hydroxymethyltransferase OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA
PE=3 SV=1
Length = 412
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKV 71
++G+ G + E+VL+ VHI NKN VP D V G+R+GTPA+T+RGF E++ +V
Sbjct: 317 LQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEV 376
Query: 72 AYFFDAAV 79
A D +
Sbjct: 377 AQLLDKVI 384
>sp|A5N7P5|GLYA_CLOK5 Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1
Length = 411
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G +E++L+ V+I NKN +P D + V GIR+GTPA+T+RGF EE+ KVAY
Sbjct: 321 NKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAY 380
Query: 74 FFDAAVK 80
F + AV+
Sbjct: 381 FINKAVE 387
>sp|B9E156|GLYA_CLOK1 Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain
NBRC 12016) GN=glyA PE=3 SV=1
Length = 411
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G +E++L+ V+I NKN +P D + V GIR+GTPA+T+RGF EE+ KVAY
Sbjct: 321 NKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAY 380
Query: 74 FFDAAVK 80
F + AV+
Sbjct: 381 FINKAVE 387
>sp|B1V975|GLYA_PHYAS Serine hydroxymethyltransferase OS=Phytoplasma australiense GN=glyA
PE=3 SV=1
Length = 413
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 20 GSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78
G ++ +LE V+I NKNT+P D M GIR+GTPA+T++GF E DF K+A D A
Sbjct: 329 GEKIANILEKVNIIVNKNTIPFDQEKPMFTSGIRLGTPAMTTKGFQEADFIKLADLIDQA 388
Query: 79 VK 80
+K
Sbjct: 389 IK 390
>sp|Q97GV1|GLYA_CLOAB Serine hydroxymethyltransferase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=glyA PE=3 SV=1
Length = 411
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73
+ I G E +L++V I ANKNT+P + S + GIRMGTP++T+RGF EE+ KVAY
Sbjct: 321 NKNITGKDAEHLLDSVGITANKNTIPFEKKSPFITSGIRMGTPSVTTRGFKEEEMKKVAY 380
Query: 74 FFDAAVK 80
F + ++
Sbjct: 381 FINYVIE 387
>sp|A4XL61|GLYA_CALS8 Serine hydroxymethyltransferase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA
PE=3 SV=1
Length = 417
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKV 71
+GI G EK L++++I NKN +P D S MV GIR+GTPA+T+RGF EED +V
Sbjct: 322 LRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEV 381
Query: 72 A 72
A
Sbjct: 382 A 382
>sp|Q6KHH3|GLYA_MYCMO Serine hydroxymethyltransferase OS=Mycoplasma mobile (strain ATCC
43663 / 163K / NCTC 11711) GN=glyA PE=3 SV=1
Length = 418
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
I G +++ +++I ANKN++P D + + G+RMGTPA+T+RGF E +F K+A
Sbjct: 323 ISGKEASELMHSINITANKNSIPNDTLGPKISSGVRMGTPAMTTRGFKEVEFKKLARI-- 380
Query: 77 AAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPT 126
+ + +A + S+N +S K ++V E K FPT
Sbjct: 381 -----------------IIELLANSTSSNLESLKLKLKNEVLELTKAFPT 413
>sp|A7HJ69|GLYA_FERNB Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain
ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1
Length = 422
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 19/110 (17%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
+ G E L HI NKNT+P + S V GIR+GTPALT+RG EE ++A D
Sbjct: 324 VTGKAAETALGYCHITVNKNTIPNETRSPFVASGIRLGTPALTTRGMKEEQMEEIA---D 380
Query: 77 AAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHD-VEEYAKQFP 125
V + +K E N E+AKR D V E KQFP
Sbjct: 381 LIVTVLKNVKDE--------------EGNVDEEVAKRVSDRVIELCKQFP 416
>sp|Q4AAB2|GLYA_MYCHJ Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain
J / ATCC 25934 / NCTC 10110) GN=glyA PE=3 SV=1
Length = 418
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
++G + + +LE+V+I NKNT+P D +S V G+R+GTPA+TSRGF E++F+++A D
Sbjct: 324 LNGKQAQILLESVNIITNKNTIPNDTLSPFVTSGLRLGTPAMTSRGFKEQEFSQMAEIID 383
Query: 77 AAVK 80
++
Sbjct: 384 FVLR 387
>sp|Q601P7|GLYA_MYCH2 Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain
232) GN=glyA PE=3 SV=1
Length = 418
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 18 IDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76
++G + + +LE+V+I NKNT+P D +S V G+R+GTPA+TSRGF E++F+++A D
Sbjct: 324 LNGKQAQILLESVNIITNKNTIPNDTLSPFVTSGLRLGTPAMTSRGFKEQEFSQMAEIID 383
Query: 77 AAVK 80
++
Sbjct: 384 FVLR 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,972,855
Number of Sequences: 539616
Number of extensions: 1644513
Number of successful extensions: 6386
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 5009
Number of HSP's gapped (non-prelim): 842
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)