Query 032537
Match_columns 138
No_of_seqs 120 out of 1025
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2467 Glycine/serine hydroxy 100.0 1.1E-37 2.3E-42 261.9 12.4 126 5-130 350-476 (477)
2 PLN02271 serine hydroxymethylt 100.0 3.1E-34 6.6E-39 252.2 12.3 122 5-130 464-585 (586)
3 COG0112 GlyA Glycine/serine hy 100.0 5.4E-34 1.2E-38 240.6 11.7 100 5-128 313-413 (413)
4 PLN03226 serine hydroxymethylt 100.0 1.1E-28 2.3E-33 213.7 13.4 132 6-138 344-475 (475)
5 PF00464 SHMT: Serine hydroxym 99.9 7.3E-25 1.6E-29 186.8 6.9 71 5-75 329-399 (399)
6 PRK13580 serine hydroxymethylt 99.9 1.4E-21 3.1E-26 170.3 10.8 118 5-128 368-486 (493)
7 PTZ00094 serine hydroxymethylt 99.8 6.4E-18 1.4E-22 144.7 12.9 119 6-128 333-451 (452)
8 PRK13034 serine hydroxymethylt 99.6 3.1E-15 6.6E-20 127.3 12.4 101 5-127 315-416 (416)
9 PRK00011 glyA serine hydroxyme 99.3 7.1E-11 1.5E-15 99.2 12.0 102 6-129 313-415 (416)
10 cd00378 SHMT Serine-glycine hy 98.9 2.5E-08 5.5E-13 83.0 10.5 76 6-81 309-385 (402)
11 cd00617 Tnase_like Tryptophana 97.5 0.00034 7.4E-09 60.6 7.3 75 5-82 319-409 (431)
12 PRK13238 tnaA tryptophanase/L- 97.0 0.0029 6.3E-08 55.1 7.9 73 6-81 345-433 (460)
13 TIGR01979 sufS cysteine desulf 86.6 1.2 2.7E-05 36.9 4.7 69 6-80 329-400 (403)
14 PRK06225 aspartate aminotransf 85.8 5.7 0.00012 32.9 8.3 65 8-80 311-375 (380)
15 PRK00950 histidinol-phosphate 85.7 5.1 0.00011 32.7 7.8 61 7-79 300-360 (361)
16 cd00616 AHBA_syn 3-amino-5-hyd 85.1 3.5 7.6E-05 33.2 6.5 66 6-75 267-351 (352)
17 PLN02721 threonine aldolase 80.0 8.7 0.00019 30.9 7.0 62 6-80 289-351 (353)
18 PRK02731 histidinol-phosphate 79.8 11 0.00025 30.8 7.7 62 6-80 304-365 (367)
19 cd06451 AGAT_like Alanine-glyo 79.4 9.4 0.0002 31.0 7.1 56 15-79 299-355 (356)
20 PRK13520 L-tyrosine decarboxyl 78.5 8.3 0.00018 31.3 6.5 58 6-79 312-369 (371)
21 TIGR01437 selA_rel uncharacter 78.1 9 0.0002 32.0 6.7 61 6-78 300-362 (363)
22 PRK05387 histidinol-phosphate 73.4 20 0.00044 29.0 7.5 59 7-79 293-351 (353)
23 PRK06108 aspartate aminotransf 72.8 18 0.00039 29.6 7.1 61 8-79 318-380 (382)
24 PRK07908 hypothetical protein; 72.1 16 0.00034 29.8 6.6 59 7-80 287-346 (349)
25 PRK10874 cysteine sulfinate de 71.5 14 0.0003 30.8 6.2 68 7-80 327-397 (401)
26 PRK03321 putative aminotransfe 69.1 24 0.00051 28.7 7.0 54 8-80 297-350 (352)
27 PRK09440 avtA valine--pyruvate 67.9 34 0.00073 28.6 7.8 69 6-80 338-410 (416)
28 COG1168 MalY Bifunctional PLP- 67.2 11 0.00024 32.7 4.8 63 5-72 318-381 (388)
29 PRK08361 aspartate aminotransf 67.1 32 0.00069 28.6 7.5 62 8-79 325-388 (391)
30 PRK08153 histidinol-phosphate 65.6 43 0.00094 27.7 8.0 63 6-80 302-364 (369)
31 PLN03227 serine palmitoyltrans 64.2 25 0.00055 29.7 6.4 72 6-81 301-382 (392)
32 PF02575 YbaB_DNA_bd: YbaB/Ebf 64.2 21 0.00045 23.9 4.9 53 52-127 41-93 (93)
33 PRK07683 aminotransferase A; V 62.2 54 0.0012 27.3 8.0 64 8-80 318-382 (387)
34 cd00609 AAT_like Aspartate ami 62.2 29 0.00062 27.3 6.1 60 6-75 289-348 (350)
35 TIGR01141 hisC histidinol-phos 62.1 33 0.00072 27.7 6.6 53 7-74 291-344 (346)
36 TIGR01885 Orn_aminotrans ornit 62.0 25 0.00054 29.5 5.9 49 18-79 352-400 (401)
37 COG1163 DRG Predicted GTPase [ 61.4 18 0.0004 31.1 5.0 61 8-71 145-207 (365)
38 PRK00153 hypothetical protein; 61.1 27 0.00059 24.3 5.1 43 64-129 61-103 (104)
39 TIGR03301 PhnW-AepZ 2-aminoeth 60.8 39 0.00084 27.0 6.7 60 9-78 294-354 (355)
40 PRK14622 hypothetical protein; 60.3 30 0.00065 24.4 5.2 45 63-130 58-102 (103)
41 PLN03026 histidinol-phosphate 59.2 55 0.0012 27.3 7.6 58 7-77 321-378 (380)
42 cd06454 KBL_like KBL_like; thi 59.1 39 0.00084 27.0 6.4 55 17-77 293-347 (349)
43 KOG1486 GTP-binding protein DR 58.4 9.7 0.00021 32.1 2.8 50 8-58 144-194 (364)
44 PLN00175 aminotransferase fami 58.2 52 0.0011 27.9 7.3 64 6-79 342-411 (413)
45 PRK10637 cysG siroheme synthas 58.2 41 0.00089 29.3 6.8 73 6-79 73-147 (457)
46 PRK05958 8-amino-7-oxononanoat 58.1 31 0.00068 28.0 5.8 66 6-78 319-384 (385)
47 PRK04870 histidinol-phosphate 57.7 51 0.0011 26.9 7.0 56 8-77 299-354 (356)
48 PRK15481 transcriptional regul 57.6 57 0.0012 27.6 7.4 64 7-80 367-430 (431)
49 PRK07179 hypothetical protein; 57.6 41 0.00088 28.2 6.5 68 6-80 330-397 (407)
50 PRK02610 histidinol-phosphate 57.2 57 0.0012 27.0 7.2 54 8-79 316-369 (374)
51 TIGR01977 am_tr_V_EF2568 cyste 57.1 24 0.00052 28.7 4.9 65 6-76 304-374 (376)
52 PRK13479 2-aminoethylphosphona 56.3 39 0.00085 27.6 6.1 54 17-80 309-362 (368)
53 PRK14807 histidinol-phosphate 54.6 67 0.0014 26.3 7.2 55 9-78 295-349 (351)
54 TIGR03392 FeS_syn_CsdA cystein 54.5 35 0.00075 28.3 5.5 69 6-80 323-394 (398)
55 TIGR01814 kynureninase kynuren 54.5 42 0.00091 28.1 6.1 58 6-79 347-405 (406)
56 PRK13392 5-aminolevulinate syn 53.9 42 0.00092 28.1 6.0 68 6-80 328-396 (410)
57 PRK08056 threonine-phosphate d 52.8 68 0.0015 26.3 7.0 60 8-80 295-354 (356)
58 TIGR01821 5aminolev_synth 5-am 52.8 35 0.00077 28.4 5.4 68 6-80 327-395 (402)
59 TIGR02326 transamin_PhnW 2-ami 52.0 87 0.0019 25.5 7.5 52 18-79 309-360 (363)
60 PRK06423 phosphoribosylformylg 51.8 46 0.00099 21.7 4.7 53 5-73 1-57 (73)
61 PRK10534 L-threonine aldolase; 50.8 59 0.0013 26.1 6.2 58 5-79 274-331 (333)
62 PRK06207 aspartate aminotransf 50.4 87 0.0019 26.3 7.4 62 8-79 337-400 (405)
63 PRK14625 hypothetical protein; 50.3 55 0.0012 23.4 5.3 45 63-130 59-105 (109)
64 PF01276 OKR_DC_1: Orn/Lys/Arg 50.0 16 0.00035 31.9 3.0 25 14-38 377-401 (417)
65 PRK07777 aminotransferase; Val 49.6 82 0.0018 26.0 7.0 66 6-77 315-382 (387)
66 PRK09064 5-aminolevulinate syn 49.6 44 0.00094 27.9 5.4 68 6-80 328-396 (407)
67 PRK08175 aminotransferase; Val 49.0 1.2E+02 0.0025 25.3 7.9 63 8-79 322-387 (395)
68 PRK08636 aspartate aminotransf 48.9 1.1E+02 0.0024 25.5 7.8 63 8-80 333-399 (403)
69 PRK03158 histidinol-phosphate 48.8 85 0.0018 25.5 6.9 56 8-78 303-358 (359)
70 TIGR01366 serC_3 phosphoserine 48.0 82 0.0018 26.3 6.8 60 11-80 300-359 (361)
71 PRK00854 rocD ornithine--oxo-a 47.9 85 0.0018 26.1 6.9 61 6-79 339-399 (401)
72 PRK11658 UDP-4-amino-4-deoxy-L 47.9 48 0.0011 27.7 5.5 71 9-79 295-377 (379)
73 COG4566 TtrR Response regulato 47.7 60 0.0013 25.9 5.5 32 8-39 51-82 (202)
74 PRK07682 hypothetical protein; 47.3 1.3E+02 0.0029 24.6 7.9 63 8-79 311-374 (378)
75 TIGR03402 FeS_nifS cysteine de 47.1 65 0.0014 26.5 6.0 60 17-80 298-371 (379)
76 PRK09105 putative aminotransfe 46.6 1.1E+02 0.0025 25.3 7.5 56 8-79 313-368 (370)
77 PRK04781 histidinol-phosphate 46.4 1.1E+02 0.0024 25.3 7.3 55 9-78 306-360 (364)
78 PF08085 Entericidin: Enterici 46.3 15 0.00032 18.9 1.3 18 59-77 2-19 (21)
79 PRK04366 glycine dehydrogenase 46.2 1.1E+02 0.0023 26.8 7.5 66 7-80 379-447 (481)
80 PRK05839 hypothetical protein; 45.4 1.2E+02 0.0026 25.1 7.4 62 8-79 311-372 (374)
81 PRK02936 argD acetylornithine 45.4 89 0.0019 25.6 6.6 58 6-79 320-377 (377)
82 PRK06348 aspartate aminotransf 45.2 1.3E+02 0.0029 24.8 7.7 44 8-55 320-365 (384)
83 TIGR01976 am_tr_V_VC1184 cyste 44.9 65 0.0014 26.5 5.7 62 4-73 326-395 (397)
84 PRK04260 acetylornithine amino 44.6 83 0.0018 25.9 6.3 56 7-78 319-374 (375)
85 COG0718 Uncharacterized protei 44.4 75 0.0016 22.7 5.2 42 64-129 63-104 (105)
86 PF04343 DUF488: Protein of un 43.4 32 0.0007 24.2 3.2 25 9-33 16-46 (122)
87 TIGR00707 argD acetylornithine 43.3 93 0.002 25.3 6.4 55 8-78 324-378 (379)
88 CHL00137 rps13 ribosomal prote 42.8 1.3E+02 0.0027 21.9 6.3 40 16-77 23-62 (122)
89 TIGR00858 bioF 8-amino-7-oxono 42.6 62 0.0014 25.8 5.2 61 7-74 298-358 (360)
90 PTZ00125 ornithine aminotransf 42.5 1.2E+02 0.0027 25.0 7.0 51 17-80 344-394 (400)
91 PRK05937 8-amino-7-oxononanoat 41.7 65 0.0014 26.7 5.2 54 17-80 296-349 (370)
92 PRK05957 aspartate aminotransf 41.6 1.5E+02 0.0032 24.6 7.4 63 7-79 319-383 (389)
93 TIGR03403 nifS_epsilon cystein 41.6 91 0.002 25.6 6.1 68 7-80 293-374 (382)
94 COG4273 Uncharacterized conser 41.2 1.1E+02 0.0024 22.9 5.7 55 17-81 75-129 (135)
95 TIGR03588 PseC UDP-4-keto-6-de 41.0 1E+02 0.0022 25.5 6.3 68 7-78 295-379 (380)
96 PF13844 Glyco_transf_41: Glyc 40.6 41 0.00089 29.9 4.1 53 52-126 398-450 (468)
97 PRK07392 threonine-phosphate d 40.4 1.3E+02 0.0029 24.5 6.9 58 8-79 298-357 (360)
98 PF12307 DUF3631: Protein of u 40.2 44 0.00095 26.2 3.7 41 14-70 139-179 (184)
99 PRK13393 5-aminolevulinate syn 39.8 79 0.0017 26.5 5.5 55 20-80 340-395 (406)
100 PLN02955 8-amino-7-oxononanoat 39.5 1.1E+02 0.0025 27.2 6.6 69 6-81 393-461 (476)
101 PRK05664 threonine-phosphate d 39.5 1.4E+02 0.0031 24.2 6.9 46 19-78 280-325 (330)
102 PRK05289 UDP-N-acetylglucosami 39.3 74 0.0016 25.5 5.1 48 31-80 171-221 (262)
103 TIGR03542 DAPAT_plant LL-diami 38.4 1.8E+02 0.0038 24.3 7.4 63 5-78 337-401 (402)
104 PLN02376 1-aminocyclopropane-1 38.3 1.5E+02 0.0033 26.0 7.3 65 7-80 365-437 (496)
105 TIGR03812 tyr_de_CO2_Arch tyro 38.2 1E+02 0.0022 25.0 5.8 55 6-76 317-371 (373)
106 PRK09331 Sep-tRNA:Cys-tRNA syn 38.0 1.1E+02 0.0025 25.4 6.2 51 17-80 330-380 (387)
107 TIGR02539 SepCysS Sep-tRNA:Cys 37.9 1.1E+02 0.0025 25.2 6.1 61 5-79 298-366 (370)
108 COG1448 TyrB Aspartate/tyrosin 37.7 65 0.0014 28.2 4.7 44 17-78 352-395 (396)
109 PRK09257 aromatic amino acid a 37.5 66 0.0014 26.8 4.7 44 18-79 353-396 (396)
110 PRK07865 N-succinyldiaminopime 37.3 1.5E+02 0.0032 24.2 6.7 56 8-75 307-362 (364)
111 cd06452 SepCysS Sep-tRNA:Cys-t 36.9 1.3E+02 0.0029 24.5 6.4 47 19-78 313-359 (361)
112 PRK07590 L,L-diaminopimelate a 36.6 1.6E+02 0.0035 24.6 6.9 62 6-78 345-408 (409)
113 PRK05562 precorrin-2 dehydroge 36.5 1.6E+02 0.0035 23.5 6.6 59 21-79 100-160 (223)
114 PRK14624 hypothetical protein; 35.8 1.1E+02 0.0023 22.2 4.9 44 63-129 63-106 (115)
115 PLN02822 serine palmitoyltrans 35.7 1.1E+02 0.0025 26.7 6.0 55 22-80 422-476 (481)
116 PLN02855 Bifunctional selenocy 35.4 47 0.001 28.0 3.5 69 6-80 345-417 (424)
117 PRK11706 TDP-4-oxo-6-deoxy-D-g 35.3 1.7E+02 0.0036 24.3 6.8 35 5-40 288-322 (375)
118 COG0099 RpsM Ribosomal protein 35.3 99 0.0021 22.7 4.7 40 16-77 23-62 (121)
119 TIGR01470 cysG_Nterm siroheme 35.0 1.5E+02 0.0033 22.9 6.1 59 21-79 84-144 (205)
120 PRK07309 aromatic amino acid a 34.7 2.4E+02 0.0052 23.4 7.6 60 10-79 324-386 (391)
121 PRK07337 aminotransferase; Val 33.7 2.4E+02 0.0052 23.3 7.4 63 6-78 317-386 (388)
122 PRK03244 argD acetylornithine 33.4 1.8E+02 0.004 24.0 6.7 59 7-80 335-393 (398)
123 PRK06959 putative threonine-ph 33.3 2.2E+02 0.0047 23.3 7.1 55 9-81 279-333 (339)
124 PRK06836 aspartate aminotransf 33.1 1.9E+02 0.0041 24.0 6.8 52 18-80 339-390 (394)
125 PRK04635 histidinol-phosphate 31.8 2.2E+02 0.0048 23.2 6.9 52 8-75 298-349 (354)
126 PRK05764 aspartate aminotransf 31.7 2.9E+02 0.0063 22.6 7.8 62 8-80 324-390 (393)
127 cd06453 SufS_like Cysteine des 31.6 1.1E+02 0.0023 24.9 5.0 63 6-74 307-372 (373)
128 PRK08960 hypothetical protein; 31.6 2.4E+02 0.0052 23.3 7.1 61 8-78 321-384 (387)
129 PRK14809 histidinol-phosphate 31.4 2.4E+02 0.0051 23.0 7.0 56 8-79 300-355 (357)
130 PRK03317 histidinol-phosphate 31.3 2.8E+02 0.0061 22.6 7.4 47 19-80 317-363 (368)
131 PRK04073 rocD ornithine--oxo-a 31.1 2.4E+02 0.0053 23.4 7.1 57 7-79 339-395 (396)
132 PRK15029 arginine decarboxylas 31.0 91 0.002 29.5 4.8 55 9-76 536-599 (755)
133 PF02873 MurB_C: UDP-N-acetyle 30.8 1.3E+02 0.0029 21.1 4.7 46 19-80 36-90 (105)
134 PRK02948 cysteine desulfurase; 30.4 1.2E+02 0.0026 24.8 5.1 61 16-80 299-373 (381)
135 PRK05166 histidinol-phosphate 30.1 2.9E+02 0.0063 22.6 7.4 55 9-78 314-368 (371)
136 TIGR02379 ECA_wecE TDP-4-keto- 30.0 2.2E+02 0.0048 23.9 6.7 71 4-79 288-375 (376)
137 PRK10076 pyruvate formate lyas 29.8 34 0.00075 26.9 1.7 60 8-78 92-157 (213)
138 PRK07681 aspartate aminotransf 29.6 3E+02 0.0066 22.8 7.4 61 6-77 322-384 (399)
139 COG1167 ARO8 Transcriptional r 29.6 3.6E+02 0.0077 23.4 8.1 66 9-80 389-454 (459)
140 PRK01688 histidinol-phosphate 28.9 2.3E+02 0.0049 23.2 6.5 53 7-74 297-349 (351)
141 cd00610 OAT_like Acetyl ornith 28.7 1.9E+02 0.0041 23.8 6.0 60 6-78 346-412 (413)
142 PRK06718 precorrin-2 dehydroge 28.7 2E+02 0.0043 22.2 5.8 71 7-79 72-144 (202)
143 PRK06939 2-amino-3-ketobutyrat 28.3 1.9E+02 0.004 23.6 5.9 57 18-80 336-392 (397)
144 PRK09265 aminotransferase AlaT 28.2 3.1E+02 0.0066 22.8 7.2 63 8-80 333-400 (404)
145 PRK00451 glycine dehydrogenase 28.0 2.5E+02 0.0054 23.7 6.7 63 7-78 383-445 (447)
146 PRK13360 omega amino acid--pyr 27.8 1.9E+02 0.004 25.1 6.0 46 21-80 394-439 (442)
147 PRK09082 methionine aminotrans 27.5 2.7E+02 0.0058 23.0 6.7 50 6-56 319-370 (386)
148 COG3825 Uncharacterized protei 27.5 41 0.0009 28.9 1.8 42 37-78 136-178 (393)
149 PF02192 PI3K_p85B: PI3-kinase 27.1 80 0.0017 21.2 2.9 22 108-129 10-31 (78)
150 PRK01533 histidinol-phosphate 27.1 2.7E+02 0.0059 23.1 6.7 53 8-81 303-355 (366)
151 PRK06425 histidinol-phosphate 27.0 2.9E+02 0.0063 22.3 6.7 58 8-79 274-331 (332)
152 TIGR03537 DapC succinyldiamino 26.9 3.1E+02 0.0068 22.2 7.0 58 6-73 288-345 (350)
153 PRK09221 beta alanine--pyruvat 26.7 1.5E+02 0.0033 25.6 5.2 46 21-80 397-442 (445)
154 TIGR03576 pyridox_MJ0158 pyrid 26.6 2.2E+02 0.0047 23.7 6.0 59 8-76 282-342 (346)
155 PRK07550 hypothetical protein; 26.2 3.7E+02 0.008 22.1 7.3 62 7-76 320-382 (386)
156 PRK09295 bifunctional cysteine 26.0 1.2E+02 0.0026 25.3 4.4 68 6-79 332-402 (406)
157 TIGR00103 DNA_YbaB_EbfC DNA-bi 25.8 1.6E+02 0.0035 20.5 4.3 17 66-82 64-80 (102)
158 PF08236 SRI: SRI (Set2 Rpb1 i 25.8 1.6E+02 0.0034 19.9 4.2 18 63-80 28-45 (88)
159 PRK02627 acetylornithine amino 25.3 3.4E+02 0.0073 22.2 6.9 57 8-80 337-393 (396)
160 PRK15400 lysine decarboxylase 25.0 1.7E+02 0.0038 27.5 5.5 47 16-75 507-553 (714)
161 cd06450 DOPA_deC_like DOPA dec 24.9 1.4E+02 0.003 23.8 4.5 63 6-77 278-344 (345)
162 PRK06855 aminotransferase; Val 24.8 3.8E+02 0.0083 22.7 7.3 50 21-80 378-428 (433)
163 PF04695 Pex14_N: Peroxisomal 24.5 34 0.00074 25.0 0.7 22 13-34 30-51 (136)
164 PRK15399 lysine decarboxylase 24.4 1.8E+02 0.004 27.3 5.6 48 15-75 506-553 (713)
165 PRK08912 hypothetical protein; 24.2 3.9E+02 0.0086 21.9 7.1 67 6-79 315-384 (387)
166 PRK04053 rps13p 30S ribosomal 24.0 1.6E+02 0.0035 22.1 4.3 40 16-77 31-70 (149)
167 PLN02450 1-aminocyclopropane-1 23.7 2.6E+02 0.0056 24.3 6.1 63 8-80 359-429 (468)
168 PRK07986 adenosylmethionine--8 23.7 3.6E+02 0.0078 23.2 7.0 60 6-80 363-422 (428)
169 PRK06173 adenosylmethionine--8 23.6 3.8E+02 0.0082 23.1 7.1 61 5-80 364-424 (429)
170 PRK08363 alanine aminotransfer 23.6 4.2E+02 0.0092 21.9 7.6 50 20-79 342-392 (398)
171 PF04298 Zn_peptidase_2: Putat 23.5 1.1E+02 0.0024 24.6 3.5 48 15-63 34-87 (222)
172 COG1890 RPS1A Ribosomal protei 23.3 2E+02 0.0043 23.2 4.9 66 48-126 115-181 (214)
173 cd00613 GDC-P Glycine cleavage 23.3 1.5E+02 0.0032 24.3 4.4 58 6-73 338-396 (398)
174 PLN02607 1-aminocyclopropane-1 23.3 3.2E+02 0.0069 23.6 6.6 64 8-80 366-436 (447)
175 PF06180 CbiK: Cobalt chelatas 23.2 82 0.0018 25.8 2.8 61 6-79 73-135 (262)
176 cd01896 DRG The developmentall 22.8 1.1E+02 0.0024 23.9 3.4 59 9-71 83-144 (233)
177 PRK10081 entericidin B membran 22.3 98 0.0021 19.1 2.3 22 58-80 23-44 (48)
178 COG0520 csdA Selenocysteine ly 22.3 1.7E+02 0.0037 25.2 4.7 60 16-79 341-403 (405)
179 COG2171 DapD Tetrahydrodipicol 22.0 58 0.0013 27.1 1.7 61 3-64 59-122 (271)
180 cd03821 GT1_Bme6_like This fam 21.8 3.2E+02 0.0069 20.8 5.8 50 18-68 270-319 (375)
181 TIGR03540 DapC_direct LL-diami 21.8 4.5E+02 0.0097 21.5 7.3 46 6-56 320-367 (383)
182 PRK07505 hypothetical protein; 21.5 2.9E+02 0.0062 23.0 5.8 55 20-80 344-398 (402)
183 cd03351 LbH_UDP-GlcNAc_AT UDP- 21.2 2E+02 0.0044 22.7 4.7 26 56-81 194-219 (254)
184 PRK09276 LL-diaminopimelate am 20.9 3.8E+02 0.0082 22.0 6.4 44 8-56 324-369 (385)
185 PF14258 DUF4350: Domain of un 20.9 2.1E+02 0.0045 17.7 3.9 54 20-77 7-62 (70)
186 PRK08637 hypothetical protein; 20.8 2.1E+02 0.0045 23.7 4.8 57 8-80 328-385 (388)
187 PF11690 DUF3287: Protein of u 20.5 3.4E+02 0.0073 19.5 5.6 35 45-81 16-50 (109)
188 PRK03080 phosphoserine aminotr 20.3 3.6E+02 0.0079 22.4 6.2 64 7-80 307-372 (378)
189 PRK14810 formamidopyrimidine-D 20.3 2.5E+02 0.0054 22.8 5.1 46 16-83 168-213 (272)
No 1
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=261.93 Aligned_cols=126 Identities=56% Similarity=0.811 Sum_probs=116.9
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVK 84 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~ 84 (138)
-+||||||||+.|++|..+|++||.|+|++|||++|+|.|++.|+||||||||||+|||.|+||++||++|+++++++.+
T Consensus 350 DnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~i~~~ 429 (477)
T KOG2467|consen 350 DNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVKIALE 429 (477)
T ss_pred cceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHhhhhcccc-HHHHHHHHHHHHHHHhhCCCCCcc
Q 032537 85 IKSETQGTKLKDFVATTQSANF-QSEIAKRCHDVEEYAKQFPTIGFE 130 (138)
Q Consensus 85 ~~~~~~g~~~~df~~~~~~~~~-~~~~~~ir~~V~~l~~~fp~~~~~ 130 (138)
++.+.++++++||++.+.+++. .++++++|++|++|+.+||+|+++
T Consensus 430 ~~~~~~~~~lkdf~~~~~~~~~~~~~v~~Lr~~Ve~fa~~fp~pg~~ 476 (477)
T KOG2467|consen 430 IQKEAGGKKLKDFKKFLSENKVMSEEVAELRKRVEEFAGQFPMPGFE 476 (477)
T ss_pred HHhhcccchHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9887666999999988876531 247889999999999999999874
No 2
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=3.1e-34 Score=252.18 Aligned_cols=122 Identities=36% Similarity=0.589 Sum_probs=111.7
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVK 84 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~ 84 (138)
-|||||||++++|++|..+|++|++|||++|||+||+|.+++.|||||||||+||+|||+|+||++||+||++++++.++
T Consensus 464 dnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~~~~~ 543 (586)
T PLN02271 464 DNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQIASA 543 (586)
T ss_pred CcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred hhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCcc
Q 032537 85 IKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFE 130 (138)
Q Consensus 85 ~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~~ 130 (138)
++.+ .++++++|++.+.+ ...++++|++|.+|+++||+|++|
T Consensus 544 ~~~~-~~~~~~~~~~~~~~---~~~i~~l~~~V~~~~~~fp~p~~~ 585 (586)
T PLN02271 544 VQRE-HGKLQKEFLKGLQN---NKDIVELRNRVEAFASQFAMPGFD 585 (586)
T ss_pred hhhh-cchhhhhhhhccCC---HHHHHHHHHHHHHHHHhCCCCCCC
Confidence 7655 47788898876654 356889999999999999999865
No 3
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-34 Score=240.62 Aligned_cols=100 Identities=32% Similarity=0.489 Sum_probs=93.1
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 83 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~ 83 (138)
-|||||||+++.|++|++++..|+++||++|||+||+|+ +|++||||||||||+|||||+|+||++||+||.++|...
T Consensus 313 dnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~- 391 (413)
T COG0112 313 DNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGL- 391 (413)
T ss_pred cceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhcc-
Confidence 379999999999999999999999999999999999997 899999999999999999999999999999999999742
Q ss_pred hhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCC
Q 032537 84 KIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG 128 (138)
Q Consensus 84 ~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~ 128 (138)
...++++|++|.+||++||+|.
T Consensus 392 -----------------------~~~~~~vk~~V~~l~~~fp~y~ 413 (413)
T COG0112 392 -----------------------KDVPAEVKEEVAELCRRFPLYK 413 (413)
T ss_pred -----------------------chhHHHHHHHHHHHHHhCCCCC
Confidence 1246789999999999999984
No 4
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.96 E-value=1.1e-28 Score=213.74 Aligned_cols=132 Identities=53% Similarity=0.839 Sum_probs=116.3
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 85 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~~ 85 (138)
+|+++||+++.|++|.++++.|+++||.+|||.||+|.+++.|+|||+||+++|+||++|+||++||++|.++|+.....
T Consensus 344 ~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~~~~ 423 (475)
T PLN03226 344 NHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKI 423 (475)
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999976655
Q ss_pred hhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCccccccccCC
Q 032537 86 KSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKYKS 138 (138)
Q Consensus 86 ~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~~~~~~~~~~ 138 (138)
+++ .++++++|...+..+.+...++++|++|.+||++||+|+++...|||++
T Consensus 424 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~~~~~~~~~~ 475 (475)
T PLN03226 424 QKE-HGKKLKDFKKGLESNDFSKDIEALRAEVEEFATSFPMPGFDKESMKYKE 475 (475)
T ss_pred hhh-cccchhhhhhhccccccHHHHHHHHHHHHHHHHhCCCCCCCccccccCC
Confidence 544 4677888865443211125688999999999999999999999999985
No 5
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.91 E-value=7.3e-25 Score=186.79 Aligned_cols=71 Identities=46% Similarity=0.688 Sum_probs=62.4
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
-|||||||++++|++|.+++++|++|||+||||+||+|.+++.+|||||||+++|+|||+|+||++||+||
T Consensus 329 d~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 329 DNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999997
No 6
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.86 E-value=1.4e-21 Score=170.31 Aligned_cols=118 Identities=25% Similarity=0.327 Sum_probs=98.3
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 83 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~ 83 (138)
-||+|+||+++.+++|..+++.|+++||.||+|++|+++ +++.+|||||||+++|+||++++||++|+++|.+++....
T Consensus 368 dshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~~ 447 (493)
T PRK13580 368 DNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNTT 447 (493)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhhh
Confidence 489999999999999999999999999999999999998 7899999999999999999999999999999999997532
Q ss_pred hhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCC
Q 032537 84 KIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG 128 (138)
Q Consensus 84 ~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~ 128 (138)
..+.. .|+++++ +...+ ...++++|++|.+|+.+||+|.
T Consensus 448 ~~~~~-~~~~~~~--~~~~~---~~~~~~~~~~v~~~~~~~p~~~ 486 (493)
T PRK13580 448 PGTTA-EGAPSKA--KYELD---EGVAQEVRARVAELLARFPLYP 486 (493)
T ss_pred hcccc-ccccccc--cccCC---HHHHHHHHHHHHHHHHhCCCCC
Confidence 11111 2444544 21212 3567899999999999999953
No 7
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.76 E-value=6.4e-18 Score=144.75 Aligned_cols=119 Identities=48% Similarity=0.720 Sum_probs=101.9
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 85 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~~ 85 (138)
+|+++|++...|++|..+...|++.||.|+++.+|+++.+..+++||+|++.+||||++++||+.++++|.+++......
T Consensus 333 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~~ 412 (452)
T PTZ00094 333 NHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEI 412 (452)
T ss_pred CceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 68999999989999999999999999999999999998778889999999999999999999999999999999876555
Q ss_pred hhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCC
Q 032537 86 KSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG 128 (138)
Q Consensus 86 ~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~ 128 (138)
.+++ +++..+|.+...+ ...++++|++|.+||.+||+|+
T Consensus 413 ~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~ 451 (452)
T PTZ00094 413 QKQV-GKKLVDFKKALEK---NPELQKLRQEVVEFASQFPFPG 451 (452)
T ss_pred hhhc-ccchhhhhhhccc---HHHHHHHHHHHHHHHHhCCCCC
Confidence 4443 4444455433322 3568899999999999999997
No 8
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.63 E-value=3.1e-15 Score=127.29 Aligned_cols=101 Identities=34% Similarity=0.514 Sum_probs=90.5
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 83 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~ 83 (138)
-||+++|++...+.++..+.+.|++.||.|+++.+|+|. .|+++++||+|+.++|+||++++|++.+++.|.+++...
T Consensus 315 ~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~- 393 (416)
T PRK13034 315 DNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDL- 393 (416)
T ss_pred CCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcC-
Confidence 489999999988999999999999999999999999985 788899999999999999999999999999999998621
Q ss_pred hhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCC
Q 032537 84 KIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTI 127 (138)
Q Consensus 84 ~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~ 127 (138)
+ + ...++.+|++|.+|+++||+|
T Consensus 394 --~----------------~---~~~~~~~~~~~~~~~~~~~~~ 416 (416)
T PRK13034 394 --G----------------N---AALEQRVRKEVKALCSRFPIY 416 (416)
T ss_pred --C----------------C---HHHHHHHHHHHHHHHHhCCCC
Confidence 1 1 234689999999999999986
No 9
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.26 E-value=7.1e-11 Score=99.19 Aligned_cols=102 Identities=33% Similarity=0.551 Sum_probs=86.9
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVK 84 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~ 84 (138)
+|++++++.+.+++..++.+.|.+.||.++....|.+. +++.+.++|+|+.++|+||++++|+..|++.|.+++...
T Consensus 313 ~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~~-- 390 (416)
T PRK00011 313 NHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDNP-- 390 (416)
T ss_pred CeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhcc--
Confidence 59999999777778899999999999999988888875 677788999999999999999999999999998887521
Q ss_pred hhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCc
Q 032537 85 IKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129 (138)
Q Consensus 85 ~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~ 129 (138)
. + ...+.++|++|.+|+++||.|.|
T Consensus 391 -~----------------~---~~~~~~~~~~~~~~~~~~~~~~~ 415 (416)
T PRK00011 391 -D----------------D---EAVIEEVKEEVKELCKRFPLYKY 415 (416)
T ss_pred -C----------------c---chhHHHHHHHHHHHHHhCCCCCC
Confidence 0 0 13568999999999999997654
No 10
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.85 E-value=2.5e-08 Score=83.03 Aligned_cols=76 Identities=43% Similarity=0.639 Sum_probs=67.6
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCC-CCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~-~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
+|++++++.+.+.++..+.+.|++.||.++....|+... +..+.+||||+..+|++|+.++|+..+++.|.++++.
T Consensus 309 ~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 309 NHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred CeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 799999998778889999999999999999887888752 4556799999999999999999999999999998863
No 11
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=97.50 E-value=0.00034 Score=60.63 Aligned_cols=75 Identities=11% Similarity=-0.041 Sum_probs=57.7
Q ss_pred ceeEEEEeccCCC-------CCHH-HHHHHHhhcCceeccccC---CCCCCC-----CCCCceeecChhhhhcCCCHHHH
Q 032537 5 MILLFAKMFHQQG-------IDGS-RVEKVLEAVHIAANKNTV---PGDVSA-----MVPGGIRMGTPALTSRGFVEEDF 68 (138)
Q Consensus 5 ~tHlvlvDlr~~g-------l~G~-~ae~~Le~~gI~vNkn~i---P~d~~~-----~~~sGiRlGT~alTtRG~~e~dm 68 (138)
-+|.|++|++.+. .++. -+..+|++.||.+..... |.|+.. -...++||++| +|+++.++|
T Consensus 319 Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p---rr~~t~~~~ 395 (431)
T cd00617 319 GGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP---RRVYTQDHM 395 (431)
T ss_pred cceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---ccccCHHHH
Confidence 3799999987541 2343 355899999999876544 666521 13579999999 999999999
Q ss_pred HHHHHHHHHHHHhh
Q 032537 69 AKVAYFFDAAVKLT 82 (138)
Q Consensus 69 ~~IA~lI~~~l~~~ 82 (138)
..||+.|.++++..
T Consensus 396 ~~~~~~~~~~~~~~ 409 (431)
T cd00617 396 DYVAAAVIALYERR 409 (431)
T ss_pred HHHHHHHHHHHhhH
Confidence 99999999988753
No 12
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.02 E-value=0.0029 Score=55.10 Aligned_cols=73 Identities=11% Similarity=-0.014 Sum_probs=58.0
Q ss_pred eeEEEEeccCC-------CC-CHHHHHHHHhhcCceecccc---CCCCCC-----CCCCCceeecChhhhhcCCCHHHHH
Q 032537 6 ILLFAKMFHQQ-------GI-DGSRVEKVLEAVHIAANKNT---VPGDVS-----AMVPGGIRMGTPALTSRGFVEEDFA 69 (138)
Q Consensus 6 tHlvlvDlr~~-------gl-~G~~ae~~Le~~gI~vNkn~---iP~d~~-----~~~~sGiRlGT~alTtRG~~e~dm~ 69 (138)
+|.|++|++.+ +. +..-+..+|+++||.+.... .|.|+. +....++||+.| +|+++.++|+
T Consensus 345 g~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~---rr~~~~~~~~ 421 (460)
T PRK13238 345 GHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIP---RRVYTQSHMD 421 (460)
T ss_pred ceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecc---cccCCHHHHH
Confidence 69999999764 23 46688999999999997655 566542 123579999999 9999999999
Q ss_pred HHHHHHHHHHHh
Q 032537 70 KVAYFFDAAVKL 81 (138)
Q Consensus 70 ~IA~lI~~~l~~ 81 (138)
.+|+.|..+.+.
T Consensus 422 ~~~~~l~~~~~~ 433 (460)
T PRK13238 422 YVAEALKAVKEN 433 (460)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 13
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=86.56 E-value=1.2 Score=36.93 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=47.0
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceecccc---CCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~---iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.+.+. ++++.++.+.|++.||.+..-. -|.-.....++.|||+....| +++|++.+.+.|.+++.
T Consensus 329 ~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~----t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 329 GGIISFNVE--GVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYN----TEEDIDALVEALKKVRK 400 (403)
T ss_pred CceEEEEeC--CcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCC----CHHHHHHHHHHHHHHHH
Confidence 567777764 5678899999999999986421 110000112467999877666 66899999988876653
No 14
>PRK06225 aspartate aminotransferase; Provisional
Probab=85.84 E-value=5.7 Score=32.86 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=46.8
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++++...++++.+....|.+.||.+-... +......++.+|++.. ..++|+.+..+.|.+++.
T Consensus 311 ~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~--~~~~~~~~~~iR~s~~------~~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 311 MMVIDISEAGIDPEDLVEYLLERKIFVRQGT--YTSKRFGDRYIRVSFS------IPREQVEVFCEEFPDVVE 375 (380)
T ss_pred EEEEEcccccCCHHHHHHHHHHCCEEEcCCc--ccCcCCCCceEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 6788887777899999999999999875321 1111223568999942 267999999988877774
No 15
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=85.68 E-value=5.1 Score=32.69 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=42.3
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
..+++++ .+++..+..+.|.+.||.+..... + ....+..|||+.. .++|++.+.+.|.+++
T Consensus 300 ~~i~~~~--~~~~~~~~~~~l~~~gv~v~~~~~-f--~~~~~~~lRis~~-------~~~~~~~l~~~L~~il 360 (361)
T PRK00950 300 NFVLVDV--TPMTAKEFCEELLKRGVIVRDCTS-F--RGLGDYYIRVSIG-------TFEENERFLEILKEIV 360 (361)
T ss_pred eEEEEEC--CCCCHHHHHHHHHHCCEEEeeCCc-c--CCCCCCeEEEECC-------CHHHHHHHHHHHHHHh
Confidence 3567887 356888888888889998864221 1 1122467999965 5678888888877655
No 16
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=85.13 E-value=3.5 Score=33.24 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=47.8
Q ss_pred eeEEEEeccCC-CCCHHHHHHHHhhcCceeccccCCCCCC-CC----------CC-------CceeecChhhhhcCCCHH
Q 032537 6 ILLFAKMFHQQ-GIDGSRVEKVLEAVHIAANKNTVPGDVS-AM----------VP-------GGIRMGTPALTSRGFVEE 66 (138)
Q Consensus 6 tHlvlvDlr~~-gl~G~~ae~~Le~~gI~vNkn~iP~d~~-~~----------~~-------sGiRlGT~alTtRG~~e~ 66 (138)
.+++.+.+... +.+..++.+.|.+.||.++....|.... ++ .| +.|||.... .++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~----~~t~~ 342 (352)
T cd00616 267 YHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHP----SLTEE 342 (352)
T ss_pred eEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCC----CCCHH
Confidence 36677776532 6789999999999999998877775431 11 12 578887655 67799
Q ss_pred HHHHHHHHH
Q 032537 67 DFAKVAYFF 75 (138)
Q Consensus 67 dm~~IA~lI 75 (138)
||+.|++.|
T Consensus 343 di~~i~~~l 351 (352)
T cd00616 343 EIDRVIEAL 351 (352)
T ss_pred HHHHHHHHh
Confidence 999998765
No 17
>PLN02721 threonine aldolase
Probab=80.03 E-value=8.7 Score=30.94 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=45.7
Q ss_pred eeEEEEeccC-CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQ-QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~-~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++++++.. .+.++....+.|.+.||.+.. + .+.+|||.... ..+++||+++.+.+.+++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~----~-----~~~~lR~~~~~----~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 289 TNIVYFDITDGSRITAEKLCKSLEEHGVLLMP----G-----NSSRIRVVTHH----QISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred ceEEEEEccCCccccHHHHHHHHHhCCcEEec----C-----CCceEEEEecC----cCCHHHHHHHHHHHHHHhh
Confidence 5677888754 235788899999999999872 2 24589998542 3568999999998877663
No 18
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=79.78 E-value=11 Score=30.75 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=43.3
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+..+++++ +.+.+..++...|.+.||.|....-++ .+..|||+.. ..+|+..+.+.+.+++.
T Consensus 304 g~~~~i~~-~~~~~~~~~~~~L~~~gI~v~~~~~~~-----~~~~iRis~~-------~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 304 GNFILVDF-DDGKDAAEAYQALLKRGVIVRPVAGYG-----LPNALRITIG-------TEEENRRFLAALKEFLA 365 (367)
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHCCEEEEeCCCCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHHh
Confidence 45678887 345688888888989999986432111 2467999963 46788888877766653
No 19
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=79.41 E-value=9.4 Score=30.98 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHhhc-CceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 15 QQGIDGSRVEKVLEAV-HIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 15 ~~gl~G~~ae~~Le~~-gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
+.++++..+.+.|.+. ||.+..-. .+..+..||++.... .+++|++.+.+.+.+++
T Consensus 299 ~~~~~~~~~~~~L~~~~gI~~~~g~-----~~~~~~~iRis~~~~----~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 299 PEGVDGDEVVRRLMKRYNIEIAGGL-----GPTAGKVFRIGHMGE----ATREDVLGVLSALEEAL 355 (356)
T ss_pred CCCCCHHHHHHHHHHhCCEEEeccc-----ccccCCEEEEecCCC----CCHHHHHHHHHHHHHHh
Confidence 3467888888888887 99986321 122345899998766 56789999988887765
No 20
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=78.47 E-value=8.3 Score=31.34 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=42.4
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
+++|.+++. ++.++.+.|.+.||.+.... .++.|||+.... .+++|+..+.+.+.+++
T Consensus 312 ~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~----~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 312 LNIVAFDDP----NPDEVREKLRERGWRVSVTR--------CPEALRIVCMPH----VTREHIENFLEDLKEVK 369 (371)
T ss_pred ceEEEEecC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECC----CCHHHHHHHHHHHHHHh
Confidence 457777754 57788888888899987431 135799997664 46799999888877655
No 21
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=78.09 E-value=9 Score=32.00 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=43.2
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcC--ceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVH--IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~g--I~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
...|.+|.+..|+++.++.+.|.+.| |.+-.- +.+ .+.+||.... +.++|++.+++.+.++
T Consensus 300 ~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~--~~~-----~~~~~l~~~~-----~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 300 RAEIRFDESELGMTAADVVQALRQGEPAIYTRGY--KAN-----EGIIEIDPRS-----VTGGQLDIIVERIREI 362 (363)
T ss_pred eEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeee--eec-----CCeEEEEeec-----CCHHHHHHHHHHHHHh
Confidence 34567777778999999999998766 655331 111 3467777653 7799999999877654
No 22
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=73.37 E-value=20 Score=29.04 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=40.1
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
..+++++. +.+..++.+.|.+.||.+. ++.. +...+.+||+.. .+++++.+.+.|.+++
T Consensus 293 ~~~~~~~~--~~~~~~~~~~l~~~gi~v~----~~~~-~~~~~~iRis~~-------~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 293 NFVFARHP--SHDAAELAAKLRERGIIVR----HFNK-PRIDQFLRITIG-------TDEEMEALVDALKEIL 351 (353)
T ss_pred cEEEEECC--CCCHHHHHHHHHHCCEEEE----ECCC-CCCCCeEEEEeC-------CHHHHHHHHHHHHHHh
Confidence 45566654 5678888888999999985 2322 123467999863 4578887777776654
No 23
>PRK06108 aspartate aminotransferase; Provisional
Probab=72.81 E-value=18 Score=29.63 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=38.1
Q ss_pred EEEEeccCCCCCHHHHHH-HHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEK-VLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~-~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.+ ..+..+..+ +|++.||.+- |+.. .+..++.|||+... .++++.+..+.|.+++
T Consensus 318 ~~~~~l~~-~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~~~~~Ris~~~------~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 318 YAFFRIPG-VTDSLALAKRLVDEAGLGLA----PGTAFGPGGEGFLRWCFAR------DPARLDEAVERLRRFL 380 (382)
T ss_pred EEEEeCCC-CCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHH
Confidence 34667654 235555555 4588999883 4432 22235689997553 6788887777776655
No 24
>PRK07908 hypothetical protein; Provisional
Probab=72.12 E-value=16 Score=29.84 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=41.7
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
..+++++.. +..+...|++.||.+. |++. ....+..|||+.. .++|++.+.+-|.+++.
T Consensus 287 ~~~~~~~~~----~~~~~~~l~~~gI~v~----~g~~f~~~~~~~vRis~~-------~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 287 PFVLVRVPD----AELLRKRLRERGIAVR----RGDTFPGLDPDYLRLAVR-------PRAEVPVLVQALAEILK 346 (349)
T ss_pred eEEEEECCc----HHHHHHHHHhCCEEEE----ECCCCCCCCCCeEEEEeC-------CCccHHHHHHHHHHHHh
Confidence 345666642 6788889999999986 4433 2223578999972 57899888888877653
No 25
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=71.49 E-value=14 Score=30.77 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=46.1
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC---CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV---SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~---~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.++.+++. ++++.++...|.+.||.+..-..+..+ ....+++|||+....+ +++|++.+.+.|.+++.
T Consensus 327 ~i~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n----t~edid~ll~al~~~~~ 397 (401)
T PRK10874 327 SLLAFDFA--GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN----TQSDVDALVNAVDRALE 397 (401)
T ss_pred cEEEEEEC--CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccC----CHHHHHHHHHHHHHHHH
Confidence 45555543 577888989999999998753322210 0012468999988765 67899998888877664
No 26
>PRK03321 putative aminotransferase; Provisional
Probab=69.11 E-value=24 Score=28.73 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=39.5
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++++. .+..+..+.|.+.||.+. |++ ..+|||+. ..+++++.+.+.+.+++.
T Consensus 297 ~i~i~l~---~~~~~~~~~l~~~gI~v~----~~~-----~~~iRi~~-------~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 297 FVWLPLG---ERTADFAAAAAEAGVVVR----PFA-----GEGVRVTI-------GAPEENDAFLRAARAWRA 350 (352)
T ss_pred EEEEeCC---CCHHHHHHHHHHCCEEEE----ccC-----CCcEEEee-------CCHHHHHHHHHHHHHHhc
Confidence 4677763 256778888999999985 332 34799995 367899998888877653
No 27
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=67.95 E-value=34 Score=28.64 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=44.5
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccC--CCCCCC--CCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTV--PGDVSA--MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~i--P~d~~~--~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+-.+++++...+++..+..+.|.+.||.+..-.. |+.... ...+.+||+... .++++++..+.|.+++.
T Consensus 338 g~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~------~~~~l~~~i~~l~~~~~ 410 (416)
T PRK09440 338 AIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ------DDEEIEKGIAILAEEVE 410 (416)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC------CHHHHHHHHHHHHHHHH
Confidence 3456788876566778888889999998874221 111100 012579999641 47888887777777664
No 28
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=67.21 E-value=11 Score=32.73 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=41.3
Q ss_pred ceeEEEEeccCCCCCH-HHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHH
Q 032537 5 MILLFAKMFHQQGIDG-SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G-~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA 72 (138)
-|-|+++|+|+.|++. .-.+-.|+++++.+|.=..=|... .+-+|+- .-|.|-.-++-++.|+
T Consensus 318 gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g---~gf~RlN--~acpr~~L~eal~ri~ 381 (388)
T COG1168 318 GTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEG---SGFVRLN--FACPRAILEEALERLK 381 (388)
T ss_pred CceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCC---CceEEEe--cCCCHHHHHHHHHHHH
Confidence 3779999999999996 777888999999998432222221 3446764 2244544455554444
No 29
>PRK08361 aspartate aminotransferase; Provisional
Probab=67.12 E-value=32 Score=28.57 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=38.5
Q ss_pred EEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++...+++..+....| ++.||.+. |+.. ....++.+||+.. ..++++.+-.+.|.+++
T Consensus 325 ~~~~~l~~~~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~------~~~~~l~~al~~l~~~l 388 (391)
T PRK08361 325 YVFANIDETGMSSEDFAEWLLEKARVVVI----PGTAFGKAGEGYIRISYA------TSKEKLIEAMERMEKAL 388 (391)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCEEEc----CchhhCCCCCCEEEEEec------CCHHHHHHHHHHHHHHH
Confidence 46678876677777777665 57899876 4332 2222467999854 24556655555555444
No 30
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=65.59 E-value=43 Score=27.70 Aligned_cols=63 Identities=21% Similarity=0.146 Sum_probs=42.8
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+..+++++...+....+..+.|.+.||.+. .|+.. ..+..+||+.. .++|+..+.+.+.+++.
T Consensus 302 ~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~---~p~~~--~~~~~iRis~~-------~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 302 TNFVAIDCGRDGAFARAVLDGLIARDIFVR---MPGVA--PLDRCIRVSCG-------PDEELDLFAEALPEALE 364 (369)
T ss_pred CcEEEEECCCCcccHHHHHHHHHHCCeEEe---eCCCC--CCCCeEEEecC-------CHHHHHHHHHHHHHHHH
Confidence 346777875434456677777778899983 24432 12458999965 47899988888877764
No 31
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=64.20 E-value=25 Score=29.68 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=45.2
Q ss_pred eeEEEEeccCCCC--------CHHHHHHHHhhcCceeccccC-CCCCCCCC-CCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGI--------DGSRVEKVLEAVHIAANKNTV-PGDVSAMV-PGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 6 tHlvlvDlr~~gl--------~G~~ae~~Le~~gI~vNkn~i-P~d~~~~~-~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
++++-|++.+... -+.++.+.|.+.||.++.... |.-.-++. +.-||+ .++.+.+++|+.++.+.+
T Consensus 301 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~----~~~~~~t~eei~~~~~~l 376 (392)
T PLN03227 301 SPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRV----VANASHTREDIDKLLTVL 376 (392)
T ss_pred CCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEE----EecCCCCHHHHHHHHHHH
Confidence 5566676643211 124667777788998864211 10001111 356788 467899999999999999
Q ss_pred HHHHHh
Q 032537 76 DAAVKL 81 (138)
Q Consensus 76 ~~~l~~ 81 (138)
.+++..
T Consensus 377 ~~~~~~ 382 (392)
T PLN03227 377 GEAVEA 382 (392)
T ss_pred HHHHHH
Confidence 998853
No 32
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=64.16 E-value=21 Score=23.93 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=35.3
Q ss_pred eecChhhhhcCCCHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCC
Q 032537 52 RMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTI 127 (138)
Q Consensus 52 RlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~ 127 (138)
++=...+.-+.+.+.|-..++++|..++..+.. ..-+..++.+..++..|++|
T Consensus 41 ~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~-----------------------~a~~~~~~~~~~~~g~~~~P 93 (93)
T PF02575_consen 41 EVVDIEIDPSALRPLDPEELEDLIVEAVNDAQK-----------------------KAREKAQEEMAELTGGLGLP 93 (93)
T ss_dssp -EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTT-S-
T ss_pred eEEEEEEehHhhccCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCC
Confidence 555556666777778999999999999976421 22356777888899888887
No 33
>PRK07683 aminotransferase A; Validated
Probab=62.24 E-value=54 Score=27.26 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=40.1
Q ss_pred EEEEeccCCCCCHHHHH-HHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae-~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++.+...+++..+.. ..|++.||.+-.... + .+..+..+||+.. ..++++++-.+.|.+++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~-f--~~~~~~~~Ri~~~------~~~~~~~~al~~l~~~l~ 382 (387)
T PRK07683 318 YLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSA-F--SEYGEGYVRLSYA------YSIETLKEGLDRLEAFLQ 382 (387)
T ss_pred EEEEecccCCCCHHHHHHHHHHhCCEEEcCchh-h--CCCCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 45666665566665554 567999998763221 1 1222568999874 257777777777766653
No 34
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=62.22 E-value=29 Score=27.33 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=41.1
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
+.++++.+... .+.....+.|.+.||.++...-+.. ..++.|||+-... .+|+..+.+.|
T Consensus 289 g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~---~~~~~iRi~~~~~------~~~i~~~~~al 348 (350)
T cd00609 289 GFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGE---GGEGFVRLSFATP------EEELEEALERL 348 (350)
T ss_pred cEEEEEecCCC-ChHHHHHHHHHhCCEEEeccccccc---CCCCeEEEEeeCC------HHHHHHHHHHh
Confidence 45666776542 4778899999999999875443332 2356899996554 67887776554
No 35
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=62.14 E-value=33 Score=27.68 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=36.0
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~l 74 (138)
..+++++.. ++.++.+.|.+.||.+. |+.. ... ++.|||+.. .++|+..+.+.
T Consensus 291 ~~~~~~~~~---~~~~~~~~L~~~gI~v~----~g~~f~~~-~~~iRls~~-------~~~~i~~~~~~ 344 (346)
T TIGR01141 291 NFVLIRFPR---DADALFEALLEKGIIVR----DLNSYPGL-PNCLRITVG-------TREENDRFLAA 344 (346)
T ss_pred CEEEEecCC---CHHHHHHHHHHCCeEEE----eCCCcCCC-CCeEEEecC-------CHHHHHHHHHH
Confidence 466777763 77888889999999986 3332 111 578999943 46777665543
No 36
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=61.98 E-value=25 Score=29.45 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 18 l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.++.+....|.+.||.+.. . .+..|||.++ ..++++|+.++.+.|.+++
T Consensus 352 ~~~~~l~~~l~~~Gv~v~~----~-----~~~~lRi~p~----l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 352 RTAWDLCLKLKEKGLLAKP----T-----HGNIIRLAPP----LVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred hHHHHHHHHHHhCCEEEEe----c-----CCCEEEEeCC----ccCCHHHHHHHHHHHHHHh
Confidence 4567777888888999852 1 2357999986 4578899999988887765
No 37
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=61.40 E-value=18 Score=31.12 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=38.6
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC--CCCCCCceeecChhhhhcCCCHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV--SAMVPGGIRMGTPALTSRGFVEEDFAKV 71 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~--~~~~~sGiRlGT~alTtRG~~e~dm~~I 71 (138)
++++|+....---...++-|+.+||.+|+- |.+- ..-..+||||..+.- .-++++++.+.|
T Consensus 145 iiVld~~~~~~~~~~i~~ELe~~GIrlnk~--~p~V~I~kk~~gGI~i~~t~~-l~~~d~~~ir~i 207 (365)
T COG1163 145 IIVLDVFEDPHHRDIIERELEDVGIRLNKR--PPDVTIKKKESGGIRINGTGP-LTHLDEDTVRAI 207 (365)
T ss_pred EEEEecCCChhHHHHHHHHHHhcCeEecCC--CCceEEEEeccCCEEEecccc-cccCCHHHHHHH
Confidence 455665542211347889999999999864 4442 234468999976543 225666666554
No 38
>PRK00153 hypothetical protein; Validated
Probab=61.12 E-value=27 Score=24.33 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCc
Q 032537 64 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129 (138)
Q Consensus 64 ~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~ 129 (138)
.++|-+.+.++|..+++.+.+ ..-+..+++...++..+++|++
T Consensus 61 ~~~d~e~LedlI~~A~n~A~~-----------------------~~~~~~~e~m~~~~gg~~~pgl 103 (104)
T PRK00153 61 DPEDVEMLEDLILAAFNDALR-----------------------KAEETMKEKMGKLTGGLLPPGF 103 (104)
T ss_pred CCcCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCCC
Confidence 457888999999999975421 1224566778888888988875
No 39
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=60.80 E-value=39 Score=27.03 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=39.8
Q ss_pred EEEeccC-CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 9 FAKMFHQ-QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 9 vlvDlr~-~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+.+.+.. ...+..++.+.|.+.||.+..- ... ....|||+.... .+++|++...+.|.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~----~~~--~~~~iRis~~~~----~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 294 VSFLYPDDPDFDFDDFYQELKERGFVIYPG----KLT--LADTFRIGTIGE----IDAADIERLLEAIKDA 354 (355)
T ss_pred EEEECCCCCcchHHHHHHHHHHCCEEEECC----ccc--cccEEEEecCCC----CCHHHHHHHHHHHHhh
Confidence 4455532 1256678889999999998632 211 125799987553 4578999888887664
No 40
>PRK14622 hypothetical protein; Provisional
Probab=60.30 E-value=30 Score=24.42 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCcc
Q 032537 63 FVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFE 130 (138)
Q Consensus 63 ~~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~~ 130 (138)
+.++|.+.+-++|..|++-+.+ ..-+...++...++..+|+|++.
T Consensus 58 l~~ed~e~LeDLI~aA~N~A~~-----------------------k~~~~~~~~m~~~tgg~~lPG~~ 102 (103)
T PRK14622 58 VDPNDKAMLEDLVTAAVNAAVE-----------------------KARTAADESMSKATGGIKIPGIA 102 (103)
T ss_pred cCcccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCCCC
Confidence 4678999999999999975421 11234567888899999999863
No 41
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=59.18 E-value=55 Score=27.26 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=38.7
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
..+++++.+ +++..+....|.+.||.+. |+.. +..++.|||+.. .++|+..+.+.+.+
T Consensus 321 ~f~~~~~~~-~~~~~~~~~~l~~~gI~v~----~~~~-~~~~~~lRis~~-------~~~~~~~l~~al~~ 378 (380)
T PLN03026 321 NFILCRVTS-GRDAKKLKEDLAKMGVMVR----HYNS-KELKGYIRVSVG-------KPEHTDALMEALKQ 378 (380)
T ss_pred eEEEEECCC-CCCHHHHHHHHHHCCeEEE----ECCC-CCCCCEEEEecC-------CHHHHHHHHHHHHH
Confidence 456777543 5677888888889999985 3322 122457999855 46788777766543
No 42
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=59.11 E-value=39 Score=27.03 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
+.+..++...|.+.||.+.....+ ..+.....|||+... -..++|++++.+.|.+
T Consensus 293 ~~~~~~~~~~L~~~gI~~~~~~~~--~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 293 PAKAVAFSDALLERGIYVQAIRYP--TVPRGTARLRISLSA----AHTKEDIDRLLEALKE 347 (349)
T ss_pred hHHHHHHHHHHHhCCceEEEecCC--ccCCCCCeEEEEEeC----CCCHHHHHHHHHHHHH
Confidence 345677777777779998764222 111123579999643 3567899888877754
No 43
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=58.41 E-value=9.7 Score=32.07 Aligned_cols=50 Identities=30% Similarity=0.270 Sum_probs=34.7
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhh
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPAL 58 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~al 58 (138)
|+++|.++...--...|+-||++||.+||-. |.=. .+-..+||.+++...
T Consensus 144 lMvLDatk~e~qr~~le~ELe~vGiRLNk~~-Pniy~k~kk~gGi~f~~T~~ 194 (364)
T KOG1486|consen 144 LMVLDATKSEDQREILEKELEAVGIRLNKRK-PNIYFKKKKTGGISFNTTVP 194 (364)
T ss_pred EEEecCCcchhHHHHHHHHHHHhceeccCCC-CCeEEEeeccCCeEEeeeec
Confidence 5667766655455678999999999999852 2222 334578999986544
No 44
>PLN00175 aminotransferase family protein; Provisional
Probab=58.21 E-value=52 Score=27.88 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=41.0
Q ss_pred eeEEEEeccCCCC-CH-HHHHHHHhhcCceeccccCCCCC----CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGI-DG-SRVEKVLEAVHIAANKNTVPGDV----SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl-~G-~~ae~~Le~~gI~vNkn~iP~d~----~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
++.+++++.+.++ +. .-++.+|++.||.+. |+.. .......|||+.. ..++++++..+.|.+++
T Consensus 342 ~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~F~~~~~~~~~~iRls~~------~~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 342 TYFVMVDHTPFGFENDIAFCEYLIEEVGVAAI----PPSVFYLNPEDGKNLVRFAFC------KDEETLRAAVERMKTKL 411 (413)
T ss_pred eEEEEEeccccCCCCHHHHHHHHHHhCCEEEe----CchHhCCCCCCCCCEEEEEEc------CCHHHHHHHHHHHHHHH
Confidence 4568888766565 44 445556688999975 4432 1112357999964 24788887777776655
No 45
>PRK10637 cysG siroheme synthase; Provisional
Probab=58.19 E-value=41 Score=29.30 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=52.5
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeec--ChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlG--T~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.|||++-.-...+ ..++.+.|.+.||.||-..-|...+...|+=+|-| +.+++|-|-.+.=-+.|-+-|.+.+
T Consensus 73 ~~lv~~at~d~~~-n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ie~~~ 147 (457)
T PRK10637 73 CWLAIAATDDDAV-NQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLL 147 (457)
T ss_pred CEEEEECCCCHHH-hHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 3667666444443 34566778888999998888866655567766766 5678899999888887777777666
No 46
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=58.05 E-value=31 Score=27.96 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=41.9
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
++++.+.+.. +.+..++.+.|.+.||.+..-..|.. +...+.|||+.+.. ..++|+..+.+.|.++
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~--~~~~~~lRis~~~~----~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 319 SAIQPLIVGD-NERALALAAALQEQGFWVGAIRPPTV--PAGTSRLRITLTAA----HTEADIDRLLEALAEA 384 (385)
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHCCceEecccCCCC--CCCCceEEEEecCC----CCHHHHHHHHHHHHhc
Confidence 3456666532 24566778888889999975322211 11235799986542 4688998888877654
No 47
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=57.65 E-value=51 Score=26.88 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=36.5
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
.+++++. ++.++.+.|.+.||.|..... + .+..++.|||+.. .++++..+.+-|.+
T Consensus 299 ~~~~~~~----~~~~~~~~l~~~gI~v~~~~~-f--~~~~~~~iRis~~-------~~~~~~~l~~al~~ 354 (356)
T PRK04870 299 FILVRVP----DAAAVFDGLKTRGVLVKNLSG-M--HPLLANCLRVTVG-------TPEENAQFLAALKA 354 (356)
T ss_pred EEEEECC----CHHHHHHHHHHCCEEEEECCC-C--CCCCCCeEEEeCC-------CHHHHHHHHHHHHH
Confidence 4566653 578888999999999864221 1 1223468999965 46777666655544
No 48
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=57.64 E-value=57 Score=27.55 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=41.5
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
-.+++++.. +..+....|.+.||.+..-..-+... ..++|||+... ..++++++..+.|.++++
T Consensus 367 ~f~~~~l~~---~~~~~~~~l~~~gV~v~pg~~f~~~~--~~~~iRis~~~-----~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 367 LNLWLPLDT---DSQATALTLAKSGWLVREGEAFGVSA--PSHGLRITLST-----LNDAEINRLAADLHQALN 430 (431)
T ss_pred EEEEEECCC---CHHHHHHHHHHCCcEEecCCccccCC--CCCeEEEEcCC-----CChHHHHHHHHHHHHHhc
Confidence 356778753 45677777888999987422111111 13579998543 347899998888888763
No 49
>PRK07179 hypothetical protein; Provisional
Probab=57.59 E-value=41 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=43.8
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.+.+.. ..++..+.+.|.+.||.+..-.-|..+ ...+.|||..+.. .+++|+.++.+.+.+++.
T Consensus 330 ~~i~~l~~~~-~~~~~~~~~~L~~~GI~~~~~~~p~~~--~~~~~lRis~~~~----~t~edi~~~~~~l~~~~~ 397 (407)
T PRK07179 330 SQIIALETGS-ERNTEVLRDALEERNVFGAVFCAPATP--KNRNLIRLSLNAD----LTASDLDRVLEVCREARD 397 (407)
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHCCceEeeecCCCCC--CCCceEEEEECCC----CCHHHHHHHHHHHHHHHH
Confidence 3556665421 124567777888899986533333322 2246799987664 467999999888877764
No 50
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=57.15 E-value=57 Score=27.00 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=36.8
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.. +++..++...|.+.||.+.. . +++|||+... ++++++..+.|.+++
T Consensus 316 f~~~~l~~-~~~~~~~~~~l~~~gi~v~~----~------~~~lRls~~~-------~~~~~~~l~~l~~~l 369 (374)
T PRK02610 316 FLYLRLSQ-DAALAALHQALKAQGTLVRH----T------GGGLRITIGT-------PEENQRTLERLQAAL 369 (374)
T ss_pred EEEEeCCC-CCCHHHHHHHHHHCCEEEEe----C------CCeEEEeCCC-------HHHHHHHHHHHHHHH
Confidence 46677753 56788888889999999852 1 3579998542 356666666555554
No 51
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=57.06 E-value=24 Score=28.74 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=42.5
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhc-CceeccccC--C--CCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAV-HIAANKNTV--P--GDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~-gI~vNkn~i--P--~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~ 76 (138)
++++.+.+ .++++.++.+.|.+. ||.+..... + .+. ++...+.|||+.... .+++|++.+.+.|.
T Consensus 304 ~~~v~~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~----~t~~dv~~~~~~l~ 374 (376)
T TIGR01977 304 VGVVSFTV--EGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYF----NTEEEIEKLLEALS 374 (376)
T ss_pred CCeEEEEE--CCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCC----CCHHHHHHHHHHHh
Confidence 34555555 367899999999887 999875321 0 000 122356899997654 56788888877664
No 52
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=56.28 E-value=39 Score=27.57 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.++.+.|.+.||.+..- .. ...+.+|||+.. ...++|+..+.+.|.+++.
T Consensus 309 ~~~~~~l~~~L~~~gi~v~~g----~~--~~~~~iRis~~~----~~t~edi~~~l~~L~~~l~ 362 (368)
T PRK13479 309 AYDFKEFYERLKEQGFVIYPG----KL--TQVDTFRIGCIG----DVDAADIRRLVAAIAEALY 362 (368)
T ss_pred CcCHHHHHHHHHHCCEEEecC----CC--CCCCEEEEecCC----CCCHHHHHHHHHHHHHHHH
Confidence 467888888999999998532 11 113579999754 2468999999998888775
No 53
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=54.59 E-value=67 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=35.2
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+++++. +..++.+.|.+.||.|. |+......+.++||+.. .+++++.+-+-|.++
T Consensus 295 ~~i~~~----~~~~~~~~l~~~gV~v~----~~~~~~~~~~~iRis~~-------~~~~~~~l~~~l~~~ 349 (351)
T PRK14807 295 ILVKFK----DADYVYQGLLERGILVR----DFSKVEGLEGALRITVS-------SCEANDYLINGLKEL 349 (351)
T ss_pred EEEEcC----CHHHHHHHHHHCCEEEE----ECCCCCCCCCeEEEEcC-------CHHHHHHHHHHHHHh
Confidence 456664 46778888888999985 33321123568999965 356676666655543
No 54
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=54.46 E-value=35 Score=28.32 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=45.1
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC---CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV---SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~---~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.+.+. ++++.++.+.|.+.||.+..-.-.... ....+++||++....| +++|+..+.+.|.+++.
T Consensus 323 ~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~----t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 323 SSLLAFDFA--GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYN----TQQDVDALVDAVGAALE 394 (398)
T ss_pred CcEEEEEeC--CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccC----CHHHHHHHHHHHHHHHH
Confidence 445555543 678889999999999998743211100 0011367999977654 46899988888877664
No 55
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=54.45 E-value=42 Score=28.11 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=40.1
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecC-hhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT-PALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT-~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.++|.+.+. +++.++.+.|.+.||.+... .++.|||+. +-.| +++|+..+.+.|.+++
T Consensus 347 ~~~v~~~~~---~~~~~~~~~L~~~gi~v~~~---------~~~~iRiS~~~~~n----t~~did~l~~~l~~~~ 405 (406)
T TIGR01814 347 GCQLSLTHP---VPGKAVFQALIKRGVIGDKR---------EPSVIRVAPVPLYN----TFVDVYDAVNVLEEIL 405 (406)
T ss_pred CCeEEEEec---CCHHHHHHHHHHCCEEEecc---------CCCeEEEechhccC----CHHHHHHHHHHHHHHh
Confidence 345666543 47888999999999987421 135799996 4454 4588888887776654
No 56
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=53.87 E-value=42 Score=28.09 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=42.4
Q ss_pred eeEEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.+.+. .+.+..++.+.| ++.||.+....-|.-+ ...+.|||..++..+ ++|+..+.+.|.++++
T Consensus 328 ~~~~~i~~~-~~~~~~~~~~~L~~~~GI~v~~~~~p~~~--~~~~~lRis~~~~~t----~edid~l~~aL~~~~~ 396 (410)
T PRK13392 328 SHIVPVMVG-DPTLCKAISDRLMSEHGIYIQPINYPTVP--RGTERLRITPTPLHD----DEDIDALVAALVAIWD 396 (410)
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHHhCCEEEeeeCCCCCC--CCCceEEEEECCCCC----HHHHHHHHHHHHHHHH
Confidence 455656542 111344555555 6889999865444321 123579999776544 6899988888877664
No 57
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=52.84 E-value=68 Score=26.27 Aligned_cols=60 Identities=5% Similarity=-0.003 Sum_probs=39.0
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++++.. ++.+..+.|.+.||.+..-... ....+..|||+.. .+++++.+-+.+.++++
T Consensus 295 ~~~~~~~~---~~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 295 YLFLRCER---PDIDLQRALLTQRILIRSCANY---PGLDSRYYRVAIR-------SAAENERLLAALRNVLT 354 (356)
T ss_pred EEEEEcCC---ChHHHHHHHHHCCeEEEECCCC---CCCCCCEEEEEEc-------CHHHHHHHHHHHHHHHc
Confidence 35666542 4567777777899988743211 1122457999963 56899888888877654
No 58
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=52.76 E-value=35 Score=28.41 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=41.7
Q ss_pred eeEEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.+.+.. .-...++.+.| ++.||.+.....|.-+ ...+.|||..++. .+++|+.++.+.+.+++.
T Consensus 327 ~~i~~i~~~~-~~~a~~~~~~L~~~~Gi~v~~~~~p~~~--~g~~~lRis~~~~----~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 327 SHIVPVIIGD-AALCKKVSDLLLNKHGIYVQPINYPTVP--RGTERLRITPTPA----HTDKMIDDLVEALLLVWD 395 (402)
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHhcCCEEEEeECCCCCC--CCCceEEEEeCCC----CCHHHHHHHHHHHHHHHH
Confidence 5566665421 11234555555 5679998865444322 1235799997765 457899888888777664
No 59
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=51.95 E-value=87 Score=25.52 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=37.6
Q ss_pred CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 18 l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
++...+.+.|.+.||.+..-..+ .+.+||||...- .+++|++...+.|.++|
T Consensus 309 ~~~~~v~~~L~~~gi~v~~g~~~------~~~~iRi~~~~~----~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 309 YRFADFYQRLKEQGFVIYPGKVS------QVDCFRIGNIGE----VDAADITRLLTAIGKAM 360 (363)
T ss_pred CCHHHHHHHHHHCCEEEECCcCC------CCCEEEEecCCC----CCHHHHHHHHHHHHHHh
Confidence 67778888888889998632211 246899997542 35789999988887776
No 60
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=51.78 E-value=46 Score=21.66 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=34.0
Q ss_pred ceeEEEEeccCCCC---CHHHHHHHHhhcCce-eccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHH
Q 032537 5 MILLFAKMFHQQGI---DGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73 (138)
Q Consensus 5 ~tHlvlvDlr~~gl---~G~~ae~~Le~~gI~-vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~ 73 (138)
|.|.|-|-+++ |+ -|..+.+.|...|+. ++ .+|.|- .++..|.++++.+.+|+
T Consensus 1 m~~~v~V~~k~-gv~Dp~G~ti~~~l~~lg~~~v~--------------~Vr~~k-~~~l~~~~~~~~~~i~~ 57 (73)
T PRK06423 1 MKFKVEVTYKP-GVEDPEALTILKNLNILGYNGIK--------------GVSISK-VYYFDADSYNEVDEIAG 57 (73)
T ss_pred CeEEEEEEECC-CCcChHHHHHHHHHHHcCCCCcc--------------eEEEEE-EEEEecCCHHHHHHHHH
Confidence 57788888776 55 567777777776643 22 367763 34446677777766664
No 61
>PRK10534 L-threonine aldolase; Provisional
Probab=50.79 E-value=59 Score=26.11 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.7
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.++.+++++.. .+..++.+.|.+.||.+. |+. .+||... .| .++++++++.+.|.+.+
T Consensus 274 ~~nfv~~~~~~--~~~~~~~~~l~~~gi~v~----~~~-------~~rl~~~---~r-~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 274 DTNMLFVRVGE--EQAAALGEYMRERNVLIN----ASP-------IVRLVTH---LD-VSREQLAEVVAHWRAFL 331 (333)
T ss_pred CceEEEEECCc--hhHHHHHHHHHHcCeeec----CCc-------eEEEEEE---eC-CCHHHHHHHHHHHHHHh
Confidence 47888998753 246788899999999984 221 4788653 23 46888888887776543
No 62
>PRK06207 aspartate aminotransferase; Provisional
Probab=50.44 E-value=87 Score=26.33 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred EEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.+.+++..+....| ++.||.+- |+.. .+..+..+||+... .++++++--+.|.+++
T Consensus 337 fl~~~l~~~~~~~~~~~~~l~~~~gV~v~----pG~~F~~~~~~~~Ris~~~------~~~~l~~al~rl~~~l 400 (405)
T PRK06207 337 YLFPRLPRLAVSLHDFVKILRLQAGVIVT----PGTEFSPHTADSIRLNFSQ------DHAAAVAAAERIAQLI 400 (405)
T ss_pred EEEEeCcccCCCHHHHHHHHHHhcCEEEe----CchHhCCCCCCeEEEEecC------CHHHHHHHHHHHHHHH
Confidence 66788876567777777766 58999875 5443 22235679999652 3566655555554444
No 63
>PRK14625 hypothetical protein; Provisional
Probab=50.29 E-value=55 Score=23.44 Aligned_cols=45 Identities=20% Similarity=0.042 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCC--CCCcc
Q 032537 63 FVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFP--TIGFE 130 (138)
Q Consensus 63 ~~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp--~~~~~ 130 (138)
+.++|-+.+-++|..|++-+.. ..-+...++...++..+| +|++.
T Consensus 59 l~~eD~e~LeDLI~aA~NdA~~-----------------------k~~~~~~~~m~~~tgg~~~~lPG~~ 105 (109)
T PRK14625 59 VQPGEGEVIADLIVAAHADAKK-----------------------KLDAKQAQLMQEAAGPMAGLMGGLP 105 (109)
T ss_pred cCCccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3678899999999998875421 112345677888999999 88764
No 64
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=49.98 E-value=16 Score=31.92 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=18.5
Q ss_pred cCCCCCHHHHHHHHhhcCceecccc
Q 032537 14 HQQGIDGSRVEKVLEAVHIAANKNT 38 (138)
Q Consensus 14 r~~gl~G~~ae~~Le~~gI~vNkn~ 38 (138)
+..|++|..+++.|.+.||.+++..
T Consensus 377 ~~~Gi~g~~~~~~L~~~~I~~Ek~d 401 (417)
T PF01276_consen 377 SELGIPGYIVEKYLREHGIQVEKTD 401 (417)
T ss_dssp -SS---HHHHHHHHHHTTEE-SEEE
T ss_pred cccCCCHHHHHHHHHHcCCEEEecc
Confidence 7889999999999999999999864
No 65
>PRK07777 aminotransferase; Validated
Probab=49.64 E-value=82 Score=26.02 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=37.1
Q ss_pred eeEEEEeccCCC-CCHHHHHHHH-hhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQG-IDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 6 tHlvlvDlr~~g-l~G~~ae~~L-e~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
++.+++++++.+ .++.+..+.| ++.||.|..-..=+...+...+.+||+-. ..++++++--+.|.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~------~~~~~l~~~l~~l~~ 382 (387)
T PRK07777 315 TYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC------KRDDTLDEAIRRLRA 382 (387)
T ss_pred ceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 455667776433 3667766666 68999887321101111122457999864 236666665555544
No 66
>PRK09064 5-aminolevulinate synthase; Validated
Probab=49.60 E-value=44 Score=27.87 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=42.4
Q ss_pred eeEEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.+.+.. .....++.+.| ++.||.|....-|.-+ ...+.|||..++. .+++|+..+.+.|.+++.
T Consensus 328 ~~iv~i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~~--~~~~~lRis~~~~----~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 328 SHIVPVMVGD-PEKCKKASDMLLEEHGIYVQPINYPTVP--RGTERLRITPTPF----HTDEMIDHLVEALVEVWA 396 (407)
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCCC--CCCceEEEEeCCC----CCHHHHHHHHHHHHHHHH
Confidence 4566666532 12344555555 6779999865444221 1235699985543 466999999998888774
No 67
>PRK08175 aminotransferase; Validated
Probab=48.98 E-value=1.2e+02 Score=25.28 Aligned_cols=63 Identities=6% Similarity=-0.003 Sum_probs=36.8
Q ss_pred EEEEeccCC--CCCHHHHH-HHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQ--GIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~--gl~G~~ae-~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++... .++..++. +.|++.||.|..-... ++..+..|||+.. -.++.|.+.-+.|.+++
T Consensus 322 ~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f---~~~~~~~lRis~~------~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 322 YVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGF---GDYGDTHVRFALI------ENRDRIRQAIRGIKAMF 387 (395)
T ss_pred EEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhh---CcCCCCeEEEEeC------CCHHHHHHHHHHHHHHH
Confidence 567777542 23455555 4667899998743221 1222457999752 24567666666665555
No 68
>PRK08636 aspartate aminotransferase; Provisional
Probab=48.88 E-value=1.1e+02 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=38.8
Q ss_pred EEEEeccCC--CCCHHHH-HHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQ--GIDGSRV-EKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~--gl~G~~a-e~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++++.+. +++..+. +..|++.||.+. |+.. .....+.|||+.. ..++++++..+.|.+++.
T Consensus 333 ~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~----pg~~f~~~~~~~iRi~~~------~~~~~l~~~~~rl~~~l~ 399 (403)
T PRK08636 333 FVWAKIPEPARHLGSLEFSKQLLTEAKVAVS----PGIGFGEYGDEYVRIALI------ENENRIRQAARNIKKFLK 399 (403)
T ss_pred EEEEECCCccCCCCHHHHHHHHHHhCCEEEe----cchhhCcCCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 567787542 3344555 456778999876 4432 2222467999863 246777777777766664
No 69
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=48.84 E-value=85 Score=25.54 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=37.1
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
.+++++. .+..+..+.|.+.||.+.. ++.- ..++.|||+.. .++|+..+.+.|.++
T Consensus 303 ~i~~~~~---~~~~~~~~~l~~~gv~v~~----g~~f-~~~~~iRi~~~-------~~~~~~~l~~al~~~ 358 (359)
T PRK03158 303 FIFVDTG---RDANELFEALLKKGYIVRS----GAAL-GFPTGVRITIG-------LKEQNDKIIELLKEL 358 (359)
T ss_pred EEEEECC---CCHHHHHHHHHHCCeEEee----CCCC-CCCCeEEEecC-------CHHHHHHHHHHHHHh
Confidence 4566663 4677777888788999874 3320 12467999843 678888887766553
No 70
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=47.99 E-value=82 Score=26.26 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=43.1
Q ss_pred EeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 11 KMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 11 vDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+-+ +.|++..++...|++.||.+-.. ... +...-+|||.... .+++|++.+.+.|.++++
T Consensus 300 v~~-~~g~~~~~v~~~L~~~gI~i~~~---~~~--l~~~~vRis~~~~----~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 300 IDF-VDDIDAATVAKILRANGIVDTEP---YRK--LGRNQLRVAMFPA----IDPDDVEALTECVDWVVE 359 (361)
T ss_pred EEC-CCccCHHHHHHHHHHCCCeeccC---ccc--cCCCcEEEEcCCC----CCHHHHHHHHHHHHHHHh
Confidence 445 46899999999999999997432 111 2234599998775 457899988888887664
No 71
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=47.94 E-value=85 Score=26.06 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=40.7
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++.+++.+.+.+..+..+.|.+.||.+.. ...+.|||..+.. .+++|+.+..+.+.+++
T Consensus 339 g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~---------~~~~~lR~~p~~~----~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 339 GLMLAVELEPEAGGARQYCEALKERGLLAKD---------THDHTIRLAPPLV----ITREQVDWALEQIAKVL 399 (401)
T ss_pred ceEEEEEEecCchhHHHHHHHHHHCCeEEec---------CCCCEEEEeCCcc----cCHHHHHHHHHHHHHHh
Confidence 4556666544333566777777778999842 1135799986543 56789988888887765
No 72
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=47.93 E-value=48 Score=27.70 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=42.0
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCC---------CCCceeecChhhh---hcCCCHHHHHHHHHHHH
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAM---------VPGGIRMGTPALT---SRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~---------~~sGiRlGT~alT---tRG~~e~dm~~IA~lI~ 76 (138)
|.++....|++..++.+.|.+.||-+..-..|--..|. .|..-++.--.++ --+++++|+..|++.|.
T Consensus 295 ~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~ 374 (379)
T PRK11658 295 IRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQ 374 (379)
T ss_pred EEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 34443335778899999999999987644334322111 1122222222233 35678888888888777
Q ss_pred HHH
Q 032537 77 AAV 79 (138)
Q Consensus 77 ~~l 79 (138)
+++
T Consensus 375 ~~~ 377 (379)
T PRK11658 375 QIA 377 (379)
T ss_pred HHH
Confidence 654
No 73
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=47.70 E-value=60 Score=25.86 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=26.7
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccC
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTV 39 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~i 39 (138)
-+++|+|=.|++|.+.++.|.+.||..--..+
T Consensus 51 clllDvrMPg~sGlelq~~L~~~~~~~PVIfi 82 (202)
T COG4566 51 CLLLDVRMPGMSGLELQDRLAERGIRLPVIFL 82 (202)
T ss_pred eEEEecCCCCCchHHHHHHHHhcCCCCCEEEE
Confidence 37899999999999999999999988544433
No 74
>PRK07682 hypothetical protein; Validated
Probab=47.28 E-value=1.3e+02 Score=24.60 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=37.7
Q ss_pred EEEEeccCCCCCHHHHHHH-HhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~-Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.+.+++..+.... |++.||.+..-.. + .+..++.|||+.. ..++++++--+.|.+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~-f--~~~~~~~iRis~~------~~~~~l~~~l~~l~~~l 374 (378)
T PRK07682 311 YAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSV-F--GESGEGFIRCSYA------TSLEQLQEAMKRMKRFV 374 (378)
T ss_pred EEEEeccCCCCCHHHHHHHHHHhCCEEEcCchh-h--CcCCCCeEEEEeC------CCHHHHHHHHHHHHHHH
Confidence 4556666656777666655 5688998864211 2 1112468999854 13566666666665555
No 75
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=47.09 E-value=65 Score=26.45 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHhhcCceeccc---cCCCCC-----------CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKN---TVPGDV-----------SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn---~iP~d~-----------~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++.++...|++.||.+..- ..+.-. ....++.||++..-.||+ +|+..+.+.|.+++.
T Consensus 298 ~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~----~di~~~~~~l~~~~~ 371 (379)
T TIGR03402 298 YIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTE----EDIDYVLEVLPPIIA 371 (379)
T ss_pred CCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCH----HHHHHHHHHHHHHHH
Confidence 578899999999999998731 111100 011247899998887765 788888888777663
No 76
>PRK09105 putative aminotransferase; Provisional
Probab=46.60 E-value=1.1e+02 Score=25.31 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=36.1
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++. .++.++.+.|.+.||.+... .+ ..++.+||+.. .+++++.+.+.+.+++
T Consensus 313 f~~~~~~---~~~~~l~~~L~~~gI~v~~~-~~-----~~~~~~Ris~~-------~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 313 CFMVDVK---RPAKAVADAMAKQGVFIGRS-WP-----IWPNWVRVTVG-------SEEEMAAFRSAFAKVM 368 (370)
T ss_pred EEEEeCC---CCHHHHHHHHHHCCcEEecC-CC-----CCCCeEEEEcC-------CHHHHHHHHHHHHHHh
Confidence 3456663 46777777777779998322 11 12468999965 3678887777666544
No 77
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=46.37 E-value=1.1e+02 Score=25.28 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=37.5
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+++++. +..++.+.|.+.||.|.. ++..+..++.+||+.. .+++|..+.+.+.+.
T Consensus 306 ~~~~~~----~~~~~~~~l~~~gI~v~~----~~~~~~~~~~~Ris~~-------~~~~~~~l~~al~~~ 360 (364)
T PRK04781 306 LLVRFD----DAEAAFQALLAAGVVVRD----QRAAPRLSDALRITLG-------TPEQNDRVLAALQRT 360 (364)
T ss_pred EEEEcC----CHHHHHHHHHHCCeEEee----CCCCCCCCCeEEEeCC-------CHHHHHHHHHHHHHH
Confidence 466764 467888899999999874 3221112457999974 478888887766543
No 78
>PF08085 Entericidin: Entericidin EcnA/B family; InterPro: IPR012556 This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing [].; GO: 0009636 response to toxin, 0016020 membrane
Probab=46.34 E-value=15 Score=18.91 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=12.7
Q ss_pred hhcCCCHHHHHHHHHHHHH
Q 032537 59 TSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 59 TtRG~~e~dm~~IA~lI~~ 77 (138)
|.||++ +|+...++-|.+
T Consensus 2 Tv~G~G-~Di~~~G~ai~~ 19 (21)
T PF08085_consen 2 TVRGVG-KDIQSAGEAIER 19 (21)
T ss_pred ccchhh-HhHHHHHHHHhc
Confidence 678887 677777766644
No 79
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=46.22 E-value=1.1e+02 Score=26.75 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=47.2
Q ss_pred eEEEEecc---CCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFH---QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 7 HlvlvDlr---~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
|.+++++. ..|++..++.+.|.+.||.+.....|.- ..+.+|+...+.||+ +|+..+.+.+.++..
T Consensus 379 ~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~----~~~~l~is~~e~~t~----edid~l~~~l~~i~~ 447 (481)
T PRK04366 379 HEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLI----VPEALMIEPTETESK----ETLDAFIAAMKQIAE 447 (481)
T ss_pred EEEEEECccccccCCCHHHHHHHHHHCCccCCccccccc----cCCeEEEcccCCCCH----HHHHHHHHHHHHHHH
Confidence 77888853 3366778899999999998764333322 134689988776654 788888888777664
No 80
>PRK05839 hypothetical protein; Provisional
Probab=45.43 E-value=1.2e+02 Score=25.10 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=35.8
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.+ +..-+++.+++.||.|..-... ..+...++.+||+.. ..++++.+..+.|.+++
T Consensus 311 fi~~~~~~---~~~~~~~l~~~~gi~v~pg~~f-~~~~~~~~~iRis~~------~~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 311 YVWLPVDN---DEEFTKKLYQNEGIKVLPGSFL-GRNGIGKGYVRIALV------YDTPKLEKALEIIKTYL 372 (374)
T ss_pred EEEEeCCC---hHHHHHHHHHHCCEEEeCchhh-CCCCCCCCeEEEEec------CCHHHHHHHHHHHHHHh
Confidence 45677642 2344444446799998632221 111123578999973 24777777776666655
No 81
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=45.37 E-value=89 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=39.5
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++.+++.. +...+...|.+.||.+- |.. .+.|||..+.. .+++++.+..+.|.++|
T Consensus 320 g~~~~i~~~~---~~~~~~~~l~~~gv~v~----~~g-----~~~lRi~p~~~----~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 320 GLMIGIECTE---EVAPVIEQLREEGLLVL----SAG-----PNVIRLLPPLV----VTKEELDQAVYLLKKVL 377 (377)
T ss_pred ceEEEEEecc---hHHHHHHHHHHCCeEEe----cCC-----CCEEEEECCcc----cCHHHHHHHHHHHHHhC
Confidence 3567777653 25677788889999874 222 24699986543 55788888888776653
No 82
>PRK06348 aspartate aminotransferase; Provisional
Probab=45.21 E-value=1.3e+02 Score=24.81 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEEEeccCCCCCHHHHHHH-HhhcCceeccccCCCCC-CCCCCCceeecC
Q 032537 8 LFAKMFHQQGIDGSRVEKV-LEAVHIAANKNTVPGDV-SAMVPGGIRMGT 55 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~-Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT 55 (138)
.+++++...+++..+.... +++.||.+. |+.. .....+.|||+.
T Consensus 320 ~~~~~~~~~~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~ 365 (384)
T PRK06348 320 YAFINIKKTGLSSVEFCEKLLKEAHVLVI----PGKAFGESGEGYIRLAC 365 (384)
T ss_pred EEEEecccCCCCHHHHHHHHHHhCCEEEc----CchhhccCCCCeEEEEe
Confidence 4567776556777665554 578999876 4332 222246899996
No 83
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=44.93 E-value=65 Score=26.49 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=40.9
Q ss_pred cceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCC--------CCCCCCCCCceeecChhhhhcCCCHHHHHHHHH
Q 032537 4 WMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVP--------GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73 (138)
Q Consensus 4 ~~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP--------~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~ 73 (138)
+.++++.+.+. +.++.+..+.|++.||.|...... +-+ ...+.|||+....+ +++|+..+.+
T Consensus 326 ~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~--~~~~~iRis~~~~~----t~~di~~l~~ 395 (397)
T TIGR01976 326 ARVPTVSFTVH--GLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLN--DEGGVVRVGLAHYN----TAEEVDRLLE 395 (397)
T ss_pred CCCceEEEEeC--CcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCC--CCCCeEEEEeeccC----CHHHHHHHHH
Confidence 34667776653 567888999999999999854221 111 11356999987765 4677766654
No 84
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=44.61 E-value=83 Score=25.95 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=38.4
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
-++.+++. .+..+..+.|.+.||.+. |.. .+.|||..+.. +.++|+++..+.|.++
T Consensus 319 ~~~~~~~~---~~~~~~~~~l~~~Gi~v~----~~~-----~~~lR~~~~~~----~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 319 YMIGIETT---ADLSQLVEAARDKGLIVL----TAG-----TNVIRLLPPLT----LTKEEIEQGIAILSEV 374 (375)
T ss_pred eEEEEEec---CcHHHHHHHHHhCCCEEe----cCC-----CCEEEEcCCCc----cCHHHHHHHHHHHHHh
Confidence 34556652 256778888889999884 222 36799997654 4478888887777654
No 85
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.40 E-value=75 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCc
Q 032537 64 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129 (138)
Q Consensus 64 ~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~ 129 (138)
.++|.+.+-++|..|++-+.+ ..-+..+++..+++..+| |++
T Consensus 63 dpeD~E~LeDLi~aA~ndA~~-----------------------kv~e~~~e~m~~~t~gm~-PG~ 104 (105)
T COG0718 63 DPEDKEMLEDLILAAFNDAKK-----------------------KVEETRKEKMGALTGGMP-PGF 104 (105)
T ss_pred CcccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhhccCC-CCC
Confidence 378999999999998875321 122445778888999887 653
No 86
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=43.43 E-value=32 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.6
Q ss_pred EEEecc--CC----CCCHHHHHHHHhhcCce
Q 032537 9 FAKMFH--QQ----GIDGSRVEKVLEAVHIA 33 (138)
Q Consensus 9 vlvDlr--~~----gl~G~~ae~~Le~~gI~ 33 (138)
+|||+| |. |++...++..|+++||.
T Consensus 16 ~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~ 46 (122)
T PF04343_consen 16 VLVDVRLWPRSRKPGFNKEDLASFLEEAGIE 46 (122)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHCCce
Confidence 789965 45 88999999999999998
No 87
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=43.33 E-value=93 Score=25.34 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=36.7
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
++.+++.+ +..++.+.|.+.||.+.. .. ++.|||..+... +++++.+.-+.|.++
T Consensus 324 ~~~~~~~~---~~~~~~~~l~~~Gv~v~~----~~-----~~~lRi~~~~~~----t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 324 MLGIELEA---PCKDIVKKALEKGLLVNC----AG-----PKVLRFLPPLII----TKEEIDEAVSALEEA 378 (379)
T ss_pred EEEEEecC---cHHHHHHHHHHCCcEEee----CC-----CCEEEEECCCcC----CHHHHHHHHHHHHHh
Confidence 45555543 357888889999999873 21 357999854432 367888877777654
No 88
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=42.76 E-value=1.3e+02 Score=21.90 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
+||.-..|..+|+.+||..| .|+|. ++++++..|.++|.+
T Consensus 23 ~GIG~~~A~~ic~~lgi~~~---------------~~~~~-------Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 23 YGIGLTSAKEILEKANIDPD---------------IRTKD-------LTDEQISALREIIEE 62 (122)
T ss_pred ccccHHHHHHHHHHcCcCcC---------------cCccc-------CCHHHHHHHHHHHHH
Confidence 58889999999999998844 45653 889999999999865
No 89
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=42.62 E-value=62 Score=25.82 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=38.7
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~l 74 (138)
.++++++.. +.++.+..+.|.+.||.+.....|+.. .....|||+....+ +++|++.+.+.
T Consensus 298 ~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~~--~~~~~iRis~~~~~----~~~~i~~~l~~ 358 (360)
T TIGR00858 298 PIVPVIIGD-NASALALAEELQQQGIFVGAIRPPTVP--AGTSRLRLTLSAAH----TPGDIDRLAEA 358 (360)
T ss_pred CEEEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCCCC--CCCceEEEEEcCCC----CHHHHHHHHHh
Confidence 366677542 345778888889999999854333321 11346999977543 35777766654
No 90
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=42.48 E-value=1.2e+02 Score=24.99 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+.+...+...|.+.||.+. |.. ...|||+.+. .+.++|+.+..+.|.+++.
T Consensus 344 ~~~~~~~~~~l~~~Gv~v~----~~~-----~~~lRi~~~~----~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 344 GVNAWDLCLKLKENGLLAK----PTH-----DNIIRFAPPL----VITKEQLDQALEIIKKVLK 394 (400)
T ss_pred chHHHHHHHHHHHCCeEEe----ecC-----CCEEEEECCc----cCCHHHHHHHHHHHHHHHH
Confidence 3455666677778899985 322 3579999763 3578999999988888775
No 91
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=41.71 E-value=65 Score=26.66 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+..+..+.+.|++.||.+..-..|. .+.||+.....+ +++|++.+.+.|.+++.
T Consensus 296 ~~~~~~~~~~L~~~gi~v~~~~~~~------~~~iRis~~~~~----t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 296 GISEQELYSKLVETGIRVGVVCFPT------GPFLRVNLHAFN----TEDEVDILVSVLATYLE 349 (370)
T ss_pred ChhHHHHHHHHHHCCeeEEeeCCCC------CCEEEEEcCCCC----CHHHHHHHHHHHHHHHH
Confidence 4467888899999999887433231 236999876665 56899999999888775
No 92
>PRK05957 aspartate aminotransferase; Provisional
Probab=41.62 E-value=1.5e+02 Score=24.64 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=37.5
Q ss_pred eEEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
-.+++++. .+++..+..+.| ++.||.+- |++. .+...+.+||+...+ .+++|++-.+.|.+++
T Consensus 319 ~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRis~~~~-----~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 319 FYCFLKVN-TDLNDFELVKQLIREYRVAVI----PGTTFGMKNGCYLRIAYGAL-----QKATAKEGIERLVQGL 383 (389)
T ss_pred EEEEEeCC-CCCChHHHHHHHHHHCCEEEc----cchhhCCCCCCEEEEEEecC-----CHHHHHHHHHHHHHHH
Confidence 34667764 467777776665 57899876 4432 221234799996543 3556655555555444
No 93
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=41.62 E-value=91 Score=25.64 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=43.4
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccc--cCCCCC------------CCCCCCceeecChhhhhcCCCHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKN--TVPGDV------------SAMVPGGIRMGTPALTSRGFVEEDFAKVA 72 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn--~iP~d~------------~~~~~sGiRlGT~alTtRG~~e~dm~~IA 72 (138)
+.+++.+. |+++..+...|++.||.+..- +-++.. .+...+.||++..-.| +++|...+.
T Consensus 293 ~~~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~----t~~did~~~ 366 (382)
T TIGR03403 293 NTILISIK--GVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFT----TEEEIDYTI 366 (382)
T ss_pred CEEEEEeC--CCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCC----CHHHHHHHH
Confidence 35555543 678888888899999999841 111111 0111356999987765 457888888
Q ss_pred HHHHHHHH
Q 032537 73 YFFDAAVK 80 (138)
Q Consensus 73 ~lI~~~l~ 80 (138)
+.|.+++.
T Consensus 367 ~~l~~~~~ 374 (382)
T TIGR03403 367 EVFKKAVQ 374 (382)
T ss_pred HHHHHHHH
Confidence 77766553
No 94
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=41.24 E-value=1.1e+02 Score=22.87 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
|.+-.=|.+.|+.+|+.++...+-.|- ||+= =-.+-++++|+++|+..|.+++..
T Consensus 75 GCp~~Catk~l~~AGv~~D~~l~itdl------GikK----~~~~D~~~edv~kv~~~i~e~l~~ 129 (135)
T COG4273 75 GCPLRCATKCLAEAGVQADVHLTITDL------GIKK----TYPSDCKDEDVEKVARTIKEALTI 129 (135)
T ss_pred CChHHHHHHHHHHhccceeEEEEehhc------cccc----CCCCCCCHHHHHHHHHHHHHHhhh
Confidence 556677889999999999876555553 2221 124678999999999999999975
No 95
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=41.00 E-value=1e+02 Score=25.50 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=40.4
Q ss_pred eEEEEeccC-CCCCHHHHHHHHhhcCceeccccCCCCCCCCC---------C-------CceeecChhhhhcCCCHHHHH
Q 032537 7 LLFAKMFHQ-QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMV---------P-------GGIRMGTPALTSRGFVEEDFA 69 (138)
Q Consensus 7 HlvlvDlr~-~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~---------~-------sGiRlGT~alTtRG~~e~dm~ 69 (138)
|++.+-+.. .|++..++.+.|.+.||.+.....|....|.. | ..|+|.. --+++++||+
T Consensus 295 ~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~----~~~l~~~dv~ 370 (380)
T TIGR03588 295 HLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPL----HPALTLEQQQ 370 (380)
T ss_pred EEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCC----CCCCCHHHHH
Confidence 444444332 56789999999999999987655453221111 1 2233332 1246678888
Q ss_pred HHHHHHHHH
Q 032537 70 KVAYFFDAA 78 (138)
Q Consensus 70 ~IA~lI~~~ 78 (138)
.|.+.|.++
T Consensus 371 ~i~~~l~~~ 379 (380)
T TIGR03588 371 RVVETLRKV 379 (380)
T ss_pred HHHHHHHHh
Confidence 887777654
No 96
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=40.64 E-value=41 Score=29.93 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=28.9
Q ss_pred eecChhhhhcCCCHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCC
Q 032537 52 RMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPT 126 (138)
Q Consensus 52 RlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~ 126 (138)
|.|..-+..-|+.|-=.....+++..|+..+. + .+.++++|+++.+-..+-|+
T Consensus 398 R~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~--------------------D--~~~l~~lR~~Lr~~~~~SpL 450 (468)
T PF13844_consen 398 RVGASILRALGLPELIADSEEEYVEIAVRLAT--------------------D--PERLRALRAKLRDRRSKSPL 450 (468)
T ss_dssp SHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHcCCchhcCCCHHHHHHHHHHHhC--------------------C--HHHHHHHHHHHHHHHhhCCC
Confidence 66666666666654333333444444444321 1 34678888888877666666
No 97
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=40.44 E-value=1.3e+02 Score=24.52 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=34.5
Q ss_pred EEEEeccCCCCCHHHH-HHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRV-EKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~a-e~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.. +..+. +..|++.||.+. |++. ....++.|||+... ++++..+.+-+.+++
T Consensus 298 fl~~~~~~---~~~~l~~~ll~~~gv~v~----pg~~f~~~~~~~iRi~~~~-------~~~~~~l~~al~~~~ 357 (360)
T PRK07392 298 FLLVQSQG---SALQLQEKLLQQHRILIR----DCLSFPELGDRYFRVAVRT-------EAENQRLLEALAAIL 357 (360)
T ss_pred EEEEEcCC---CHHHHHHHHHhhCCEEEE----eCCCCCCCCCCEEEEEeCC-------HHHHHHHHHHHHHHh
Confidence 45567642 34444 455788999987 4443 22234689998543 356666666665544
No 98
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=40.17 E-value=44 Score=26.16 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=33.3
Q ss_pred cCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHH
Q 032537 14 HQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAK 70 (138)
Q Consensus 14 r~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~ 70 (138)
+..+|+..+..+.|...||. ++-||+| .-+.||+.-+||..
T Consensus 139 ~g~~Lt~r~La~~L~~ygI~--------------s~~ir~~--~~~~KGY~r~~f~D 179 (184)
T PF12307_consen 139 RGKPLTPRQLAKLLKEYGIR--------------SKNIRFG--GSQAKGYRREDFAD 179 (184)
T ss_pred CCCCCCHHHHHHHHHHCCCC--------------CCceeeC--CCCCCceeHHHHHH
Confidence 36789999999999999997 3458884 44689999988864
No 99
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=39.83 E-value=79 Score=26.47 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=36.7
Q ss_pred HHHHHHHHh-hcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 20 GSRVEKVLE-AVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 20 G~~ae~~Le-~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
..++.+.|. +.||.+....-|.-+ ...+.|||..+... +++|+..+.+.|.+++.
T Consensus 340 ~~~l~~~L~~~~Gi~v~~~~~p~~p--~g~~~iRis~~~~~----t~edid~l~~~l~~~~~ 395 (406)
T PRK13393 340 CKQISDELLDRYGIYVQPINYPTVP--RGTERLRITPSPLH----TDADIEHLVQALSEIWA 395 (406)
T ss_pred HHHHHHHHHHhCCEEEEeECCCCCC--CCCceEEEEECCCC----CHHHHHHHHHHHHHHHH
Confidence 345555554 579999875444322 12356999876654 46899999988888764
No 100
>PLN02955 8-amino-7-oxononanoate synthase
Probab=39.48 E-value=1.1e+02 Score=27.21 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=49.6
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
+|.+.|-+.... ....+.+.|.+.||.|+--.-|.-+ ...++|||...+ +-+++|+..+.+.|.++...
T Consensus 393 sPI~pI~ig~~~-~a~~~~~~L~~~Gi~v~~i~yPtVP--~g~~rLRi~lsA----~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 393 SPIISLVVGNQE-KALKASRYLLKSGFHVMAIRPPTVP--PNSCRLRVTLSA----AHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred CCEEEEEeCCHH-HHHHHHHHHHHCCCEEEEECCCCCC--CCCceEEEeeCC----CCCHHHHHHHHHHHHHHHhh
Confidence 677777654322 5667788899999999876665553 224579998544 67789999999988877653
No 101
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=39.47 E-value=1.4e+02 Score=24.19 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=32.8
Q ss_pred CHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 19 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 19 ~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+..++.+.|.+.||.|. ++. .+..|||+..+ .++++..+.+.+.+.
T Consensus 280 ~~~~~~~~l~~~gi~v~----~f~----~~~~iRis~~~------~~~~~~~l~~al~~~ 325 (330)
T PRK05664 280 DAAALHEFLARRGILTR----LFE----QPASLRFGLPA------DEADWARLDQALLAY 325 (330)
T ss_pred CHHHHHHHHHHCCeEEE----ECC----CCCeEEEECCC------CHHHHHHHHHHHHHH
Confidence 67888899999999995 232 23589999664 367787777665443
No 102
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=39.25 E-value=74 Score=25.52 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=30.5
Q ss_pred CceeccccCCCCC---CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 31 HIAANKNTVPGDV---SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 31 gI~vNkn~iP~d~---~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
|-.|.++..|+.. +|... +.++..-+.++||.++++..|++.....+.
T Consensus 171 gs~V~~di~~~~~~~G~pa~~--~~~n~~g~~~~~~~~~~~~~i~~a~~~~~~ 221 (262)
T PRK05289 171 MSGVSQDVPPYVLAEGNPARL--RGLNLVGLKRRGFSREEIHALRRAYKLLYR 221 (262)
T ss_pred ecceeccCCCCeEEecccCeE--eccchhhhhhCCCCHHHHHHHHHHHHHHHH
Confidence 3455666555443 22222 224555678999999999999887766664
No 103
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=38.35 E-value=1.8e+02 Score=24.29 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=37.8
Q ss_pred ceeEEEEeccCCCCCHHH-HHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 5 MILLFAKMFHQQGIDGSR-VEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~-ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
.+-.+++++.. +++..+ ++..|++.||.+. |++. .......|||+.. ..+++|++-.+.|.++
T Consensus 337 ~~~f~~v~l~~-~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRis~~------~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 337 HAPYLWVKTPE-GISSWDFFDFLLYQYHVVGT----PGSGFGPSGEGFVRFSAF------GKRENIVEACERIKEA 401 (402)
T ss_pred ceeEEEEECCC-CCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEec------CCHHHHHHHHHHHHhh
Confidence 34467888754 566655 5556778999986 3332 2212467999932 1567776666655543
No 104
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=38.31 E-value=1.5e+02 Score=26.04 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=37.8
Q ss_pred eEEEEeccCCCCC-------HHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGID-------GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 7 HlvlvDlr~~gl~-------G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
=.+++|+++.--+ -.-++.+++++||.+. ||.. .+..++.+||+-.. +.++++++--+.|.++
T Consensus 365 ~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~----pGs~F~~~~~g~~Ri~fa~-----~~~~~l~~al~rl~~~ 435 (496)
T PLN02376 365 LFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVS----PGSSFRCTEPGWFRICFAN-----MDDDTLHVALGRIQDF 435 (496)
T ss_pred EEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEe----CccccCCCCCCEEEEEeeC-----CCHHHHHHHHHHHHHH
Confidence 3578888642111 1234456677899876 5443 22346789998654 3456666655556555
Q ss_pred HH
Q 032537 79 VK 80 (138)
Q Consensus 79 l~ 80 (138)
+.
T Consensus 436 l~ 437 (496)
T PLN02376 436 VS 437 (496)
T ss_pred HH
Confidence 54
No 105
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=38.22 E-value=1e+02 Score=24.98 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=37.4
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~ 76 (138)
++.|.+.+. +..++.+.|.+.||.+.... .+..||++.... .+++|+..+.+.|.
T Consensus 317 ~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~----~t~edid~l~~~L~ 371 (373)
T TIGR03812 317 LNIVAFEVD----DPEEVRKKLRDRGWYVSVTR--------CPKALRIVVMPH----VTREHIEEFLEDLK 371 (373)
T ss_pred ceEEEEEeC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECC----CCHHHHHHHHHHHh
Confidence 456666543 34678888888899986431 135799987654 56788888776654
No 106
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=38.01 E-value=1.1e+02 Score=25.40 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+.+|.++.+.|.+.||.. ++.+. ..=+|+++ .|.+++|+..+.+.+.+++.
T Consensus 330 ~~~~~~~~~~L~~~gI~~----~~~~~----~~i~ri~~-----~g~t~~di~~l~~aL~~i~~ 380 (387)
T PRK09331 330 KRRGFFLYEELKKRGIHG----IKPGA----TKEFKLST-----YGLTWEQVEYVADAFKEIAE 380 (387)
T ss_pred cccchhHHHHHHHcCceE----EccCC----ceEEEEEe-----ccCCHHHHHHHHHHHHHHHH
Confidence 446778999999999962 22221 12367776 56778999888887776653
No 107
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=37.90 E-value=1.1e+02 Score=25.19 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=40.3
Q ss_pred ceeEEEEeccCC-------CCCHHHHHHHHhhcCce-eccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHH
Q 032537 5 MILLFAKMFHQQ-------GIDGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 5 ~tHlvlvDlr~~-------gl~G~~ae~~Le~~gI~-vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~ 76 (138)
.++.+++++... .-.+..+.+.|.+.||. +. |+. +.-|||... |..++|++.+.+.|.
T Consensus 298 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir----~~~-----~~~iRis~~-----~~t~e~i~~l~~~L~ 363 (370)
T TIGR02539 298 EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR----SGQ-----TKYFKLSVY-----GLTKEQVEYVVDSFE 363 (370)
T ss_pred cCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc----CCc-----ceEEEEEec-----CCCHHHHHHHHHHHH
Confidence 477888886421 11345678888888996 22 211 246899851 458899999998887
Q ss_pred HHH
Q 032537 77 AAV 79 (138)
Q Consensus 77 ~~l 79 (138)
+++
T Consensus 364 ~~~ 366 (370)
T TIGR02539 364 EIV 366 (370)
T ss_pred HHH
Confidence 665
No 108
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=37.65 E-value=65 Score=28.18 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 17 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 17 gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
|++-.++.+..++-||.+- .|| ||+...+| +..+..||+-|..+
T Consensus 352 Gls~~QV~rLree~~IY~v------------~sG-Ri~vaGl~-----~~ni~~va~ai~~v 395 (396)
T COG1448 352 GLSPEQVDRLREEFGIYLV------------ASG-RINVAGLN-----TSNIDYVAKAIAAV 395 (396)
T ss_pred CCCHHHHHHHHHhccEEEe------------cCC-eeeeccCC-----hhhHHHHHHHHHhh
Confidence 8999999999999999976 357 99977554 55677888777654
No 109
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=37.45 E-value=66 Score=26.77 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 18 l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
++...+++.+++.||.+.. +| ||+-.+ +.++++.+.++.|++++
T Consensus 353 l~~~~~~~l~~~~~V~~~p------------~~-ri~~~~-----~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 353 LTPEQVDRLREEFGVYAVG------------SG-RINVAG-----LNESNIDYVAEAIAAVL 396 (396)
T ss_pred CCHHHHHHHHHcCCEEEcC------------CC-eEEEee-----CCHHHHHHHHHHHHhhC
Confidence 4667889999999998752 34 888643 56788888888887653
No 110
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=37.30 E-value=1.5e+02 Score=24.25 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=34.6
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
.+++++ +.+..+..+.|.+.||.+..-. .+. +..+..|||+... .+++|++..+.|
T Consensus 307 ~~~~~~---~~~~~~~~~~l~~~gv~v~pg~-~f~--~~~~~~iRi~~~~------~~~~~~~~~~~l 362 (364)
T PRK07865 307 YLWATR---GEDCWDTVAWLAERGILVAPGD-FYG--PAGAQHVRVALTA------TDERIAAAVERL 362 (364)
T ss_pred EEEEeC---CCCHHHHHHHHHHCCEEEeCcc-ccC--cCCCCEEEEEecC------CHHHHHHHHHHh
Confidence 345554 2355677788899999986422 122 2235689999643 367887766544
No 111
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=36.90 E-value=1.3e+02 Score=24.47 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=31.8
Q ss_pred CHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 19 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 19 ~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+|.++.+.|.+.||.+. +.+. ..-+|+++ +|.+++|+..+.+.|.++
T Consensus 313 ~~~~~~~~L~~~gI~~~----~~~~----~~~~ri~~-----~g~~~e~~~~l~~al~~~ 359 (361)
T cd06452 313 RGYFLYSELKKRGIHGI----KPGL----TRYFKLST-----YGLTWEQVEYVVDAFKEI 359 (361)
T ss_pred cchhHHHHHHHcCceEE----cCCC----ceEEEEEe-----cCCCHHHHHHHHHHHHHH
Confidence 45678888888899852 1111 23577765 667889999888776544
No 112
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=36.64 E-value=1.6e+02 Score=24.60 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=37.1
Q ss_pred eeEEEEeccCCCCCHHH-HHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSR-VEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~-ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+..+++++.+ +++..+ ++..+++.||.+. |+.. .+.....|||+. . ..+++|++-.+.|.++
T Consensus 345 ~~f~wi~~~~-~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~-~-----~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 345 APYIWVKTPD-GMSSWDFFDKLLQEANVVGT----PGSGFGPSGEGYFRLSA-F-----GSRENVLEAMERIKKA 408 (409)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHHHCCEEEe----ChhHhCCCCCCEEEEEc-c-----CCHHHHHHHHHHHHhh
Confidence 4467888764 466555 4456678899875 3332 111235799983 2 2467776666655543
No 113
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=36.53 E-value=1.6e+02 Score=23.49 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCceeccccCCCCCCCCCCCceeec--ChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 21 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 21 ~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlG--T~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.++...+.+.|+.||-..-|...+...|+=+|-| +.+++|=|-.|.=-+.|-+-|.+.+
T Consensus 100 ~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l 160 (223)
T PRK05562 100 NKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFL 160 (223)
T ss_pred HHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 5566677788999997666655444455544444 2356777888877777777776666
No 114
>PRK14624 hypothetical protein; Provisional
Probab=35.78 E-value=1.1e+02 Score=22.18 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHhhCCCCCc
Q 032537 63 FVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 129 (138)
Q Consensus 63 ~~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~~fp~~~~ 129 (138)
+.++|-+.+-++|..|++-+.+ ..-+...++...++..+|+|++
T Consensus 63 ld~eD~E~LeDLI~aAvNdA~~-----------------------k~~e~~~e~m~~~tgGm~lPGl 106 (115)
T PRK14624 63 FDADDNKMLEDLVMAATNDALK-----------------------KAKEATAYEFQNASGGLDFSEI 106 (115)
T ss_pred cCcccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCch
Confidence 3678899999999998875421 1123456778889999999874
No 115
>PLN02822 serine palmitoyltransferase
Probab=35.69 E-value=1.1e+02 Score=26.67 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 22 ~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
-+.++|++.||.+.....|.-.....+.+|||... -+.+++|+.+..+.|.+++.
T Consensus 422 ~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is----~~~t~edI~~~~~~l~~~~~ 476 (481)
T PLN02822 422 IADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVS----AGHTESDILKASESLKRVAA 476 (481)
T ss_pred HHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEEC----CCCCHHHHHHHHHHHHHHHH
Confidence 34555668899998654443322222457998733 35688999999999888774
No 116
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=35.39 E-value=47 Score=27.96 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=45.0
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhc-Cceecccc---CCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAV-HIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~-gI~vNkn~---iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+.++.+.+. ++++.++.+.|.+. ||.+..-. -|.-.....+..||++....|| ++|++.+++.|.+++.
T Consensus 345 ~~~v~~~~~--~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt----~~di~~l~~~l~~~~~ 417 (424)
T PLN02855 345 AALCAFNVE--GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT----KEEVDAFIHALKDTIA 417 (424)
T ss_pred ccEEEEEEC--CcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC----HHHHHHHHHHHHHHHH
Confidence 345666543 67888899999887 99876311 1100000113469999877765 4899999998887774
No 117
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=35.30 E-value=1.7e+02 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=25.5
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCC
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVP 40 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP 40 (138)
..|++.+-+.+ +.+..+..+.|.+.||.+.....|
T Consensus 288 ~~~~~~~~~~~-~~~r~~l~~~L~~~gI~~~~~~~p 322 (375)
T PRK11706 288 NAHMFYIKLRD-LEDRSALINFLKEAGIMAVFHYIP 322 (375)
T ss_pred eeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCCc
Confidence 45677776643 457899999999999997654444
No 118
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=35.27 E-value=99 Score=22.72 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
+||.=..+..+|+++||.-+ .|+ ..++|+|+..|.+.|.+
T Consensus 23 yGIG~~~a~~I~~~~gi~~~---------------~r~-------~eLteeei~~ir~~i~~ 62 (121)
T COG0099 23 YGIGRRRAKEICKKAGIDPD---------------KRV-------GELTEEEIERLRDAIQN 62 (121)
T ss_pred ccccHHHHHHHHHHcCCCHh---------------Hhh-------ccCCHHHHHHHHHHHHh
Confidence 58888999999999998733 344 47899999999998875
No 119
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=34.98 E-value=1.5e+02 Score=22.95 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCceeccccCCCCCCCCCCCceeecC--hhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 21 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT--PALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 21 ~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT--~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
..+...+.+.||.||-..-|...+...|+=+|-|- .+++|-|-.+.=-+.|-+-|.+.+
T Consensus 84 ~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l 144 (205)
T TIGR01470 84 RRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLL 144 (205)
T ss_pred HHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 45667777889999977666655444566566662 357888988877777777776665
No 120
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=34.73 E-value=2.4e+02 Score=23.42 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=35.3
Q ss_pred EEeccC-CCCCHHHHH-HHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 10 AKMFHQ-QGIDGSRVE-KVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 10 lvDlr~-~gl~G~~ae-~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
++++.+ .+.+..+.. +.|++.||.+. |+.. .+...+.|||+... .++++++..+.|.+++
T Consensus 324 ~~~l~~~~~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~~------~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 324 FAKIPAGYNQDSFKFLQDFARKKAVAFI----PGAAFGPYGEGYVRLSYAA------SMETIKEAMKRLKEYM 386 (391)
T ss_pred EEECCCCCCCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHH
Confidence 456543 223455555 56788999876 4443 22235689998542 3567766666666555
No 121
>PRK07337 aminotransferase; Validated
Probab=33.75 E-value=2.4e+02 Score=23.25 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=37.2
Q ss_pred eeEEEEeccCC----CCCHHHH-HHHHhhcCceeccccCCCCC-C-CCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQ----GIDGSRV-EKVLEAVHIAANKNTVPGDV-S-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 6 tHlvlvDlr~~----gl~G~~a-e~~Le~~gI~vNkn~iP~d~-~-~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+..++++++.. .++..+. +..|++.||.+. |+.. . ....+.+||+-.. .++++++--+.|.++
T Consensus 317 g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~----pg~~f~~~~~~~~~Ri~~~~------~~~~l~~~l~rl~~~ 386 (388)
T PRK07337 317 AFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLV----PGRDFGPHAPRDYIRLSYAT------SMSRLEEAVARLGKL 386 (388)
T ss_pred eEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCCEEEEEecC------CHHHHHHHHHHHHHH
Confidence 45678888653 2466664 466889999986 3332 1 1124689998652 355655555544443
No 122
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=33.39 E-value=1.8e+02 Score=24.02 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=40.7
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.++.+.+.. . ....+...|.+.||.+... .++.|||..+... +++|+.++.+.+.+++.
T Consensus 335 ~~~~i~~~~-~-~~~~~~~~l~~~Gv~~~~~---------~~~~iR~~p~~~~----t~~~i~~~~~~l~~~l~ 393 (398)
T PRK03244 335 LLLGIVLTA-P-VAKAVEAAAREAGFLVNAV---------APDVIRLAPPLII----TDAQVDAFVAALPAILD 393 (398)
T ss_pred EEEEEEEec-c-HHHHHHHHHHHCCeEEeec---------CCCEEEEECCCcC----CHHHHHHHHHHHHHHHH
Confidence 355566532 2 4566777788889998642 1356999976533 47999999998888875
No 123
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=33.31 E-value=2.2e+02 Score=23.31 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
+++++. +..+....|.+.||.|.. +. .+.+|||+.. -.++|+..+.+.+.+++..
T Consensus 279 ~~~~~~----~~~~l~~~l~~~GI~vr~----~~----~~~~lRisi~------~~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 279 SWTDDP----RAAALHAALARRGIWTRY----FA----PPPSVRFGLP------ADEAEWQRLEDALAECVPT 333 (339)
T ss_pred EEEeCC----CHHHHHHHHHhCCeEEEE----CC----CCCeEEEECC------CCHHHHHHHHHHHHHHHHH
Confidence 356653 567788888899999952 21 1358999941 2346888888777766643
No 124
>PRK06836 aspartate aminotransferase; Provisional
Probab=33.09 E-value=1.9e+02 Score=24.04 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 18 l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+..++...|.+.||.+. |+..- ..+.++||+.. ..++++.+--+.|.++++
T Consensus 339 ~~~~~~~~~l~~~gv~v~----~g~~f-~~~~~iRi~~~------~~~~~~~~~i~~l~~~l~ 390 (394)
T PRK06836 339 EDDVAFCEKAKKHNLLLV----PGSGF-GCPGYFRLSYC------VDTETIERSLPAFEKLAK 390 (394)
T ss_pred CCHHHHHHHHHhCCEEEE----Cchhc-CCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 377888888999999876 33320 12468999874 247777776666666663
No 125
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=31.82 E-value=2.2e+02 Score=23.20 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=34.4
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
.+++++. ++.++.+.|.+.||.+.. ++. +..+..|||+.. .++||+.+.+.+
T Consensus 298 f~~~~~~----~~~~~~~~l~~~gv~v~~----~~~-~~~~~~lRis~~-------~~e~~~~l~~al 349 (354)
T PRK04635 298 YVLAKFD----DVDAVFKALWDAGIVARA----YKD-PRLANCIRFSFS-------NRAETDKLIGLI 349 (354)
T ss_pred EEEEECC----CHHHHHHHHHHCCEEEEE----CCC-CCCCCeEEEEeC-------CHHHHHHHHHHH
Confidence 4566764 467788889999999963 221 112457999942 468887776554
No 126
>PRK05764 aspartate aminotransferase; Provisional
Probab=31.73 E-value=2.9e+02 Score=22.64 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=36.5
Q ss_pred EEEEeccCC----CCCHHHH-HHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQ----GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~----gl~G~~a-e~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++++... +.+..+. +..|++.||.+- |+..-. ..+.|||+.. ..++++.+..+.|.+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~f~-~~~~vRis~~------~~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 324 YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVV----PGIAFG-APGYVRLSYA------TSLEDLEEGLERIERFLE 390 (393)
T ss_pred EEEEecccccccccCCHHHHHHHHHHhCCEEEc----cccccC-CCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 456676532 1223554 455678899875 333211 1567999842 357888777777766654
No 127
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=31.62 E-value=1.1e+02 Score=24.89 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=39.6
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCC---CCCCCCCceeecChhhhhcCCCHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGD---VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d---~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~l 74 (138)
.+++.+++. ++++.++.+.|.+.||.+..-..... .....++.||+.....+ +++||+++++.
T Consensus 307 ~~~~~~~~~--~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~----t~~di~~~~~~ 372 (373)
T cd06453 307 AGVVSFNLE--GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYN----TEEEIDALVEA 372 (373)
T ss_pred CCeEEEEEC--CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCC----CHHHHHHHHhh
Confidence 456667653 56888888999999998753221110 01113467999977664 45677776653
No 128
>PRK08960 hypothetical protein; Provisional
Probab=31.58 E-value=2.4e+02 Score=23.26 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=34.9
Q ss_pred EEEEeccCCCCCHHHHH-HHHhhcCceeccccCCCCC-CC-CCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVE-KVLEAVHIAANKNTVPGDV-SA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae-~~Le~~gI~vNkn~iP~d~-~~-~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
.+++++...+.+..+.. ..|++.||.+. |++. +. ...+.|||+... ..+.+.+-.+.|.++
T Consensus 321 f~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~~iRi~~~~------~~~~l~~al~~l~~~ 384 (387)
T PRK08960 321 YLYADISAFGGDAFAFCRHFLETEHVAFT----PGLDFGRHQAGQHVRFAYTQ------SLPRLQEAVERIARG 384 (387)
T ss_pred EEEEeccccCCCHHHHHHHHHHhCCEEEc----CchHhCCCCCCCeEEEEecC------CHHHHHHHHHHHHHH
Confidence 45777765445666655 45678999987 3332 11 123579998653 245555544444443
No 129
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=31.42 E-value=2.4e+02 Score=22.97 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=36.3
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++. +..+..+.|.+.||.|..-...+ .+..|||+.. .++++++..+.|.+++
T Consensus 300 f~~~~~~----~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRls~~-------~~~~~~~~l~~L~~~l 355 (357)
T PRK14809 300 FVLAEVG----DASAVAEAAQERGVIVRDCTSFG-----LPECIRITCG-------TREETERAVEVLNEVL 355 (357)
T ss_pred EEEEECC----CHHHHHHHHHHCCEEEEECccCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHh
Confidence 3456652 56777788999999988432221 2467999842 2578877777766554
No 130
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=31.29 E-value=2.8e+02 Score=22.62 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=33.7
Q ss_pred CHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 19 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 19 ~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+..+....|.+.||.+.. +. .+..+||+.. .++++..+.+.+.+++.
T Consensus 317 ~~~~~~~~l~~~Gv~v~~----~~----~~~~iRi~~~-------~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 317 DRHAVWQGLLDRGVLIRD----VG----IPGWLRVTIG-------TPEENDAFLAALAEVLA 363 (368)
T ss_pred CHHHHHHHHHHCCEEEEe----CC----CCCeEEEecC-------CHHHHHHHHHHHHHHHH
Confidence 567788888889999863 21 1457999954 46788888777776663
No 131
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=31.12 E-value=2.4e+02 Score=23.44 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=38.3
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.++.+++.. +...+...|.+.||.+.. . .++-|||.-|.. .+++|++++.+.|.+++
T Consensus 339 ~~~~~~~~~---~~~~~~~~l~~~Gv~~~~----~-----~~~~iRi~p~l~----~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 339 LFIGVELNE---PARPYCEALKEEGLLCKE----T-----HETVIRFAPPLV----ITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEEEEecc---hHHHHHHHHHHCCeEEec----C-----CCCEEEEECCcc----cCHHHHHHHHHHHHHHh
Confidence 456666542 456677778788999852 1 124699996544 46689988888877665
No 132
>PRK15029 arginine decarboxylase; Provisional
Probab=30.96 E-value=91 Score=29.47 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=38.9
Q ss_pred EEEeccCCCCCHH---------HHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHH
Q 032537 9 FAKMFHQQGIDGS---------RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 9 vlvDlr~~gl~G~---------~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~ 76 (138)
+.|+++..|++|. ++++.|++.||.+-+... -....|++-|-+++++..+-+-+.
T Consensus 536 lti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~-------------~~vL~l~s~g~t~~~~~~L~~aL~ 599 (755)
T PRK15029 536 VSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTD-------------FQIMFLFSMGVTRGKWGTLVNTLC 599 (755)
T ss_pred EEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCC-------------CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455666677887 999999999999987521 123567777888888876655443
No 133
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=30.79 E-value=1.3e+02 Score=21.12 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=28.7
Q ss_pred CHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhc---------CCCHHHHHHHHHHHHHHHH
Q 032537 19 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSR---------GFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 19 ~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtR---------G~~e~dm~~IA~lI~~~l~ 80 (138)
+..-|-.++|+||.- |.|+|-..+..+ |.+.+|+..+++.|.+.+.
T Consensus 36 ~~~~Ag~LIe~aGlK----------------G~~iG~a~vS~kHanfivN~g~Ata~dv~~Li~~v~~~V~ 90 (105)
T PF02873_consen 36 DEKSAGWLIEQAGLK----------------GFRIGGAQVSEKHANFIVNHGGATAADVLALIEEVRERVK 90 (105)
T ss_dssp SHH-HHHHHHHTT-T----------------T-EETTEEE-SSSTTEEEE-SS--HHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCCC----------------CCeeCcCEechhhCCeEEECCCCCHHHHHHHHHHHHHHHH
Confidence 334677788888764 788887776655 5677888888887776664
No 134
>PRK02948 cysteine desulfurase; Provisional
Probab=30.35 E-value=1.2e+02 Score=24.82 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHhhcCceecccc---CCCC-----------CCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 16 QGIDGSRVEKVLEAVHIAANKNT---VPGD-----------VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNkn~---iP~d-----------~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.++++.++...|++.||.+.... -+.- +.+...+.|||+.... .+++|+..+.+.|.+++.
T Consensus 299 ~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~----~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 299 KGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQ----TTKDQIDTTIHALETIGN 373 (381)
T ss_pred CCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCC----CCHHHHHHHHHHHHHHHH
Confidence 36678877778889999998422 1111 0011235699996544 567899998888877664
No 135
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=30.11 E-value=2.9e+02 Score=22.64 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=36.1
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+++++. .+..+....|.+.||.+- |+... ..++.|||+.. .+++++.+.+-+.++
T Consensus 314 l~~~~~---~~~~~l~~~l~~~gi~v~----p~~~~-~~~~~iRi~~~-------~~~~~~~l~~~l~~i 368 (371)
T PRK05166 314 LFFDAR---RPASAVAEALLRQGVIVK----PWKQP-GFETFIRVSIG-------SPEENDHFVAALDKV 368 (371)
T ss_pred EEEeCC---CCHHHHHHHHHHCCeEEe----cCCCC-CCCCeEEEEcC-------CHHHHHHHHHHHHHH
Confidence 466754 256777777778899876 44321 23578999976 356777777666554
No 136
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=30.04 E-value=2.2e+02 Score=23.89 Aligned_cols=71 Identities=21% Similarity=0.107 Sum_probs=43.7
Q ss_pred cceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCC-CC----------------CCceeecChhhhhcCCCHH
Q 032537 4 WMILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSA-MV----------------PGGIRMGTPALTSRGFVEE 66 (138)
Q Consensus 4 ~~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~-~~----------------~sGiRlGT~alTtRG~~e~ 66 (138)
|..|++.+.+.. +.+-.+..+.|.+.||-+.....|.-.-| +. ..+|.|... -+|+++
T Consensus 288 ~~~~~~~i~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~----~~l~~~ 362 (376)
T TIGR02379 288 HNAHMFYIKLKD-EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLY----YGLSKE 362 (376)
T ss_pred eeeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCC----CCCCHH
Confidence 334888787654 45788999999999999875555544311 10 112222221 257788
Q ss_pred HHHHHHHHHHHHH
Q 032537 67 DFAKVAYFFDAAV 79 (138)
Q Consensus 67 dm~~IA~lI~~~l 79 (138)
|+..|.+.|.+++
T Consensus 363 ~~~~i~~~i~~~~ 375 (376)
T TIGR02379 363 DQARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHHHh
Confidence 8888777766543
No 137
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.80 E-value=34 Score=26.89 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=37.6
Q ss_pred EEEEeccCC------CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQ------GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 8 lvlvDlr~~------gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+|++|++.. -++|...+.+|+........+ .-+.+=|+-+-----.+++++.||+++.+.
T Consensus 92 ~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g-----------~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l 157 (213)
T PRK10076 92 EVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEG-----------VNVIPRLPLIPGFTLSRENMQQALDVLIPL 157 (213)
T ss_pred EEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCC-----------CcEEEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 689998865 334555566666554443211 124555555554456789999999999763
No 138
>PRK07681 aspartate aminotransferase; Provisional
Probab=29.61 E-value=3e+02 Score=22.81 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=35.4
Q ss_pred eeEEEEeccCCCCCHHHHH-HHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVE-KVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae-~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
+-.+++++.+ +++..+.. ..|++.||.+. |+.. .+..++.|||+.. ..++++.+..+.|.+
T Consensus 322 g~f~~~~l~~-~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRis~~------~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPK-GWTSLSFAYALMDRANVVVT----PGHAFGPHGEGFVRIALV------QDEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCC-CCCHHHHHHHHHHhCCEEEe----CChhhCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 3456778753 56665554 44556999876 4332 2112467999864 135676655555443
No 139
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=29.57 E-value=3.6e+02 Score=23.44 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=41.8
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++++| +.+++.......+.+.|+.+---.-.|...+-..+++|||-...+ ++++++-...+.+++.
T Consensus 389 lwl~l-~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~-----~e~i~~gi~~l~~~~~ 454 (459)
T COG1167 389 LWLEL-PEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPS-----EEEIEEGIKRLAALLR 454 (459)
T ss_pred EEEEc-CCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCC-----HHHHHHHHHHHHHHHH
Confidence 45554 457888888888888888877533334433224569999977665 4555555544444443
No 140
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=28.86 E-value=2.3e+02 Score=23.20 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=33.6
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~l 74 (138)
..+++++. ++.++.+.|.+.||.|-..... +..++.+||+.. +++|++.+.+.
T Consensus 297 nfi~~~~~----~~~~l~~~L~~~gi~vr~~~~~----~~~~~~iRis~~-------~~~e~~~l~~a 349 (351)
T PRK01688 297 NYILARFT----ASSAVFKSLWDQGIILRDQNKQ----PGLSNCLRITIG-------TREECQRVIDA 349 (351)
T ss_pred cEEEEEcC----CHHHHHHHHHHCCeEEEECCCc----CCCCCeEEEeCC-------CHHHHHHHHHh
Confidence 35677764 4677788888899998642211 112457999865 35777666543
No 141
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=28.67 E-value=1.9e+02 Score=23.75 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=38.7
Q ss_pred eeEEEEeccCCC-------CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQG-------IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 6 tHlvlvDlr~~g-------l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
.+++.+.+.+.. .........|.+.||.+.... +..+|+.-+.. .+++|+.+..+.+.++
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~---------~~~lR~~~~~~----~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 346 GLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG---------GNVIRLLPPLI----ITEEEIDEGLDALDEA 412 (413)
T ss_pred ceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC---------CCEEEEECCCc----CCHHHHHHHHHHHHHh
Confidence 345555554321 345667777888899886432 34689985443 5788888887777654
No 142
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.66 E-value=2e+02 Score=22.19 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=40.5
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeec--ChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlG--T~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
++|+.-.....++ ..+...+ +.++.||-..-|-..+...|+=++-| +.+++|-|-.+.=-+.|-+-|...+
T Consensus 72 dlViaaT~d~elN-~~i~~~a-~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~ 144 (202)
T PRK06718 72 FLVIAATNDPRVN-EQVKEDL-PENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALY 144 (202)
T ss_pred eEEEEcCCCHHHH-HHHHHHH-HhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHc
Confidence 4444433333333 3344445 45889987766655544455555555 2457788888766666666555544
No 143
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=28.29 E-value=1.9e+02 Score=23.55 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 18 l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.++.+..+.|.+.||.+....-|.. +.....|||+-... ..++|+++..+.|.+++.
T Consensus 336 ~~~~~~~~~L~~~gI~v~~~~~~~~--~~~~~~iRi~~~~~----~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 336 KLAQEFADRLLEEGVYVIGFSFPVV--PKGQARIRTQMSAA----HTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred HHHHHHHHHHHHCCceEeeeCCCCC--CCCCceEEEEECCC----CCHHHHHHHHHHHHHHHH
Confidence 3455666666666999874332221 11235799875433 457899888888877764
No 144
>PRK09265 aminotransferase AlaT; Validated
Probab=28.15 E-value=3.1e+02 Score=22.83 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=38.8
Q ss_pred EEEEeccCC--CC--CHHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQ--GI--DGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~--gl--~G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++++... +. +...+.+.|.+.||.|. |+.. ....+..+||+.. ..++++++-.+.|.+++.
T Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~----pg~~F~~~~~~~~Ri~~~------~~~e~l~~~l~rl~~~l~ 400 (404)
T PRK09265 333 YAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLV----QGTGFNWPEPDHFRIVTL------PRVDDLEEAIGRIGRFLS 400 (404)
T ss_pred EEEEEecccccCCCCHHHHHHHHHHhCCEEEE----CchhhCCCCCCeEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 455666432 11 34567889999999875 3332 1112457999962 457777777777666553
No 145
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=28.01 E-value=2.5e+02 Score=23.75 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=39.2
Q ss_pred eEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~ 78 (138)
+.+.+++ +.+..++.+.|.+.||.+.-..-|+.+ ....-+|++....+| ++|+..+.+.+.++
T Consensus 383 ~~~~v~~---~~~~~~~~~~L~~~gi~~~~~~~~~~~--~~~~~~rvs~~~~~t----~e~i~~l~~~L~~~ 445 (447)
T PRK00451 383 NEFVVRL---PKPAEEVNEALLEKGILGGYDLGRYYP--ELGNHLLVCVTEKRT----KEDIDALVAALGEV 445 (447)
T ss_pred EEEEEec---CCCHHHHHHHHHhcCCCCCcccccccC--CcCCEEEEecCCCCC----HHHHHHHHHHHHHH
Confidence 4456775 246678888888888885433333322 113468988776654 47888777766544
No 146
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=27.84 E-value=1.9e+02 Score=25.06 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 21 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 21 ~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.++...|.+.||.+... .+-||| +|+++. +++|+.++.+.+.+++.
T Consensus 394 ~~~~~~l~~~Gvl~~~~----------~~~lr~-~Ppl~~---t~~eid~~~~~l~~~l~ 439 (442)
T PRK13360 394 YEVFLKCFEKGLMIRYT----------GDILAL-SPPLII---EEAQIDELFDILAQALK 439 (442)
T ss_pred HHHHHHHHHCCcEEEec----------CCEEEE-eCCCcc---CHHHHHHHHHHHHHHHH
Confidence 45556677789998632 134899 466554 78999999988888774
No 147
>PRK09082 methionine aminotransferase; Validated
Probab=27.52 E-value=2.7e+02 Score=23.00 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=30.2
Q ss_pred eeEEEEeccC-CCCCHHHHHHH-HhhcCceeccccCCCCCCCCCCCceeecCh
Q 032537 6 ILLFAKMFHQ-QGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTP 56 (138)
Q Consensus 6 tHlvlvDlr~-~gl~G~~ae~~-Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~ 56 (138)
+..+++++.. .+++..+.... +++.||.+..-.. |...+...+.+||+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~-f~~~~~~~~~~Ri~~~ 370 (386)
T PRK09082 319 TYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSV-FYADPFPHRLVRLCFA 370 (386)
T ss_pred eEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHH-hCCCCCCCCEEEEEec
Confidence 3456778864 36677777665 5899999873221 1111222456999963
No 148
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.47 E-value=41 Score=28.94 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=27.7
Q ss_pred ccCCCCCCCCCCCceeecChhh-hhcCCCHHHHHHHHHHHHHH
Q 032537 37 NTVPGDVSAMVPGGIRMGTPAL-TSRGFVEEDFAKVAYFFDAA 78 (138)
Q Consensus 37 n~iP~d~~~~~~sGiRlGT~al-TtRG~~e~dm~~IA~lI~~~ 78 (138)
-+.|+-++..+|-|+|+|+|.- -.+..+..|-.+--++-+.+
T Consensus 136 gtsPfg~~g~nPegvrvg~~s~~~g~a~kvwdkre~~nfdd~v 178 (393)
T COG3825 136 GTSPFGPNGYNPEGVRVGTPSKRNGSAVKVWDKREYRNFDDNV 178 (393)
T ss_pred CCCCCCCCCCCCcceeeCCccccCCCcCchhhhhhhhcccccc
Confidence 3456666666788999999864 44455666666666665443
No 149
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=27.12 E-value=80 Score=21.23 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCc
Q 032537 108 SEIAKRCHDVEEYAKQFPTIGF 129 (138)
Q Consensus 108 ~~~~~ir~~V~~l~~~fp~~~~ 129 (138)
..+.+||++|-+-++++|+++.
T Consensus 10 ~Tl~~iK~~lw~~A~~~PL~~~ 31 (78)
T PF02192_consen 10 ATLSEIKEELWEEAKKYPLFSL 31 (78)
T ss_dssp -BHHHHHHHHHHHGGGSTTCCC
T ss_pred CcHHHHHHHHHHHHHhCChHHH
Confidence 4578999999999999999875
No 150
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=27.07 E-value=2.7e+02 Score=23.07 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=39.2
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
.+++++. ++.++.+.|.+.||.|.. + +.+|||+.. .++||+.+-+.+.+++..
T Consensus 303 f~~~~~~----~~~~~~~~l~~~GI~Vr~----~------~~~iRis~~-------~~~~~~~l~~al~~~~~~ 355 (366)
T PRK01533 303 FIFLPVE----NGGEIYEACAHAGFIIRP----F------PNGVRITVG-------TREQNEGVISVLQQHFEN 355 (366)
T ss_pred EEEEeCC----CHHHHHHHHHHCCcEEcc----C------CCceEEeCC-------CHHHHHHHHHHHHHHHHh
Confidence 4677763 467888999999999973 2 357999753 248999888888877653
No 151
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=26.98 E-value=2.9e+02 Score=22.32 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=35.7
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++.+. +..+..+.|.+.||.+..-.. +. ...++.|||+.. .+++|..+-+.+.+++
T Consensus 274 f~~~~~~----~~~~~~~~l~~~gi~v~~~~~-f~--~~~~~~iRis~~-------~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 274 FITFMIP----DAHDFYSYLLKNGILVRLLDD-YE--CLGEQYIRIAIR-------RRSFNIKLVNALRNFL 331 (332)
T ss_pred EEEEEcC----CHHHHHHHHHHCCeEEEECCC-CC--CCCCCEEEEEeC-------CHHHHHHHHHHHHHHh
Confidence 3566653 567777777788999863221 11 112457999853 3478877777665544
No 152
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=26.86 E-value=3.1e+02 Score=22.20 Aligned_cols=58 Identities=14% Similarity=0.014 Sum_probs=35.2
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~ 73 (138)
+-.+++++.. +++..+..+.|.+.||.+..-.. ++ +..+..+||+.. -.+++|++.-+
T Consensus 288 ~~~~~~~~~~-~~~~~~l~~~L~~~gv~v~~g~~-f~--~~~~~~~Ri~~~------~~~~~~~~~l~ 345 (350)
T TIGR03537 288 TFYLWVKVPS-GIDAKDYALRLLENGIVVAPGEN-FG--SGEEGYVRVALV------PTLEECEEALR 345 (350)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHCCEEEcCchh-hC--CCCCCEEEEEec------CCHHHHHHHHH
Confidence 3356788753 56778888888889998873221 21 112457999752 13566655443
No 153
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=26.73 E-value=1.5e+02 Score=25.63 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 21 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 21 ~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.++...|.+.||.+... .+.|||- |+++. +++|+.++.+.+.++|.
T Consensus 397 ~~~~~~~~~~Gv~~~~~----------~~~lr~~-Ppl~~---t~~eid~~~~~l~~~l~ 442 (445)
T PRK09221 397 YEAFMKCFEKGLLVRYT----------GDTIALS-PPLII---EKAQIDELVDALGDALR 442 (445)
T ss_pred HHHHHHHHHCCeEEeec----------CCEEEEE-CCccC---CHHHHHHHHHHHHHHHH
Confidence 45667777889998531 1359995 66554 78999999999988884
No 154
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=26.58 E-value=2.2e+02 Score=23.67 Aligned_cols=59 Identities=7% Similarity=-0.134 Sum_probs=35.0
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceee--cChhhhhcCCCHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRM--GTPALTSRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRl--GT~alTtRG~~e~dm~~IA~lI~ 76 (138)
.+++|+...+ +...+...|++.||.|.. +..-+..++-+|| |++.-++ .+|+.+.+.|.
T Consensus 282 f~~~~~~~~~-~~~~~~~ll~~~gV~v~~----~~~f~~~~~~vRis~~~~~~~~-----~~~~~~~~al~ 342 (346)
T TIGR03576 282 FVIKGVEEEK-LIEIGLDLLRNYGIITIT----AVGMPGASKTLRFDLAAKDAER-----IGDDYLVEAVK 342 (346)
T ss_pred EEEEeCCCCC-HHHHHHHHHHhCCEEEeC----CcccCCCCCeEEEEEecChHHh-----cCHHHHHHHHH
Confidence 5788875321 347889999999999873 3210112456888 5544333 25666665543
No 155
>PRK07550 hypothetical protein; Provisional
Probab=26.23 E-value=3.7e+02 Score=22.09 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=37.0
Q ss_pred eEEEEeccCCCCCHHHHHHH-HhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 76 (138)
Q Consensus 7 HlvlvDlr~~gl~G~~ae~~-Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~ 76 (138)
-.+++++...+++..+.... +++.||.+..-...+ +...+.|||+... ..++++.+..+.|.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~---~~~~~~iRis~~~-----~~~~~~~~~~~~l~ 382 (386)
T PRK07550 320 YFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFG---PGQEGYLRLAFAN-----ADVAGIGELVERLR 382 (386)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhC---CCCCCEEEEEeec-----CCHHHHHHHHHHHH
Confidence 34566665446777776665 578899886322211 1113579999742 34677776666554
No 156
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=25.99 E-value=1.2e+02 Score=25.25 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=43.3
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceecccc---CCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~---iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
+++|.+.+. +.++.++...|++.||.+..-. .|.-.....++.||++....| +++|++.+.+.|.++.
T Consensus 332 ~~iv~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~yn----t~~did~l~~~l~~i~ 402 (406)
T PRK09295 332 LGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYN----THEEVDRLVAGLQRIH 402 (406)
T ss_pred ceEEEEEEC--CcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCC----CHHHHHHHHHHHHHHH
Confidence 456666543 5688899999999999985321 110000012345999877554 4688888887776653
No 157
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=25.82 E-value=1.6e+02 Score=20.49 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 032537 66 EDFAKVAYFFDAAVKLT 82 (138)
Q Consensus 66 ~dm~~IA~lI~~~l~~~ 82 (138)
+|-+.+.++|..|++-+
T Consensus 64 ~d~e~LedlI~~A~N~A 80 (102)
T TIGR00103 64 EDKEALEDMITEALNDA 80 (102)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 57788999998888653
No 158
>PF08236 SRI: SRI (Set2 Rpb1 interacting) domain; InterPro: IPR013257 The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. ; GO: 0018024 histone-lysine N-methyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0034968 histone lysine methylation, 0005694 chromosome; PDB: 2A7O_A 2C5Z_A.
Probab=25.76 E-value=1.6e+02 Score=19.91 Aligned_cols=18 Identities=17% Similarity=0.312 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 032537 63 FVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 63 ~~e~dm~~IA~lI~~~l~ 80 (138)
+.-+||..+|.=|...|.
T Consensus 28 ~~~ddfK~~ar~lt~~l~ 45 (88)
T PF08236_consen 28 LSKDDFKHLARKLTHKLV 45 (88)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 677999999987777764
No 159
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=25.31 E-value=3.4e+02 Score=22.20 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=36.5
Q ss_pred EEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
++.+++ +.+..+..+.|.+.||.+... . +..|||..+.. ..++|+++..+.|.+++.
T Consensus 337 ~~~i~~---~~~~~~~~~~l~~~Gv~v~~~----~-----~~~lRi~~~~~----~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 337 MIGIEL---DRPAAEIVKKALEKGLLINVT----G-----DNVLRLLPPLI----ISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred EEEEEe---cCcHHHHHHHHHHCCeEEeec----C-----CCEEEEECCcc----cCHHHHHHHHHHHHHHHH
Confidence 345554 225566666666669998632 1 24599974422 368899988888877764
No 160
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=24.98 E-value=1.7e+02 Score=27.47 Aligned_cols=47 Identities=23% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
.|++|..+++.|++.||.+-++.. -....+.+-|-+++++..+-+-+
T Consensus 507 ~Gipg~~v~~~L~e~gI~~E~~d~-------------~~iLfl~s~g~t~~~~~~L~~aL 553 (714)
T PRK15400 507 FGIPASIVAKYLDEHGIVVEKTGP-------------YNLLFLFSIGIDKTKALSLLRAL 553 (714)
T ss_pred cCCCHHHHHHHHHHcCCEEEecCC-------------CeEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999987622 11245667778888887655433
No 161
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=24.95 E-value=1.4e+02 Score=23.81 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=37.8
Q ss_pred eeEEEEeccCC---CCCHHHHHHHHhhcCce-eccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQ---GIDGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 6 tHlvlvDlr~~---gl~G~~ae~~Le~~gI~-vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
+.++.+.+.+. +++..++.+.|.+-|+. +.....+ .++.+|++..... .+++|+..+.+-|.+
T Consensus 278 ~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~------~~~~lRis~~~~~---~t~~di~~l~~~l~~ 344 (345)
T cd06450 278 LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG------GPNVLRFVVTNPL---TTRDDADALLEDIER 344 (345)
T ss_pred eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEEC------CeEEEEEEecCCC---CCHHHHHHHHHHHHh
Confidence 45667766543 46667788888877554 3322111 2457999865431 356788877766543
No 162
>PRK06855 aminotransferase; Validated
Probab=24.80 E-value=3.8e+02 Score=22.73 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 21 SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 21 ~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
..+...|++.||.+. |++. .+ ...|+||+... ..++++++-.+.|.+++.
T Consensus 378 ~~~~~l~~~~gV~v~----PG~~F~~-~~~~~Rls~~~-----~~~~~i~~~~~~l~~~~~ 428 (433)
T PRK06855 378 RFVYYLLASTGICVV----PLSSFCT-ELNGFRVTLLE-----RDEEKFEWIYQTLAEKIE 428 (433)
T ss_pred HHHHHHHHHcCEEEe----cCCcCCC-CCCceEEEECC-----CcHHHHHHHHHHHHHHHH
Confidence 344567889999875 6654 22 23579999754 356888887777777664
No 163
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.54 E-value=34 Score=25.02 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=16.2
Q ss_pred ccCCCCCHHHHHHHHhhcCcee
Q 032537 13 FHQQGIDGSRVEKVLEAVHIAA 34 (138)
Q Consensus 13 lr~~gl~G~~ae~~Le~~gI~v 34 (138)
|+++||+..+++++|++++-..
T Consensus 30 L~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 30 LESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHCT--HHHHHHHHHHHT--S
T ss_pred HHcCCCCHHHHHHHHHhcCCcc
Confidence 5678999999999999998876
No 164
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=24.39 E-value=1.8e+02 Score=27.35 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHH
Q 032537 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75 (138)
Q Consensus 15 ~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI 75 (138)
..|++|..+++.|++.||.+-+... -....+++-|-+++++..+-+-+
T Consensus 506 ~~Gi~g~~l~~~L~e~gI~~E~~d~-------------~~vL~l~s~g~t~~~~~~L~~aL 553 (713)
T PRK15399 506 EEGIPAALVAKFLDERGIVVEKTGP-------------YNLLFLFSIGIDKTKAMGLLRGL 553 (713)
T ss_pred cCCCCHHHHHHHHHHcCCEEEecCC-------------CeEEEEeCCCCCHHHHHHHHHHH
Confidence 4599999999999999999987622 12355677777888887665443
No 165
>PRK08912 hypothetical protein; Provisional
Probab=24.16 E-value=3.9e+02 Score=21.92 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=37.4
Q ss_pred eeEEEEeccCCC--CCHHHHHHH-HhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQG--IDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~g--l~G~~ae~~-Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
+..+++++.+.+ .+..+.... +++.||.+..-..-+...+ ..+.+||+... .++++++--+.|.+++
T Consensus 315 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-~~~~iRl~~~~------~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 315 TYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDP-VTSVVRFCFAK------RDATLDEAVERLAAAR 384 (387)
T ss_pred ceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCC-CCCEEEEEEeC------CHHHHHHHHHHHHHHH
Confidence 445667876533 456555554 5789998763211111111 24689999663 3566666555555544
No 166
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=24.02 E-value=1.6e+02 Score=22.14 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHH
Q 032537 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 77 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~ 77 (138)
+||.-..|..+|+.+||..| .|+| -+++++...|.++|.+
T Consensus 31 yGIG~~~a~~Ic~~lgi~~~---------------~~~~-------~Lt~~qi~~l~~~i~~ 70 (149)
T PRK04053 31 KGIGRRTARAIARKLGLDPN---------------AKLG-------YLSDEEIEKIEEALED 70 (149)
T ss_pred ccccHHHHHHHHHHcCcCCC---------------CccC-------cCCHHHHHHHHHHHHh
Confidence 58899999999999998744 4555 5789999999998864
No 167
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=23.68 E-value=2.6e+02 Score=24.27 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=38.7
Q ss_pred EEEEeccCCCCCH-------HHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDG-------SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 8 lvlvDlr~~gl~G-------~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.+++++.+. ++. ..++++|++.||.+. |+.. ....++.+||+-.. ..++++++..+.|.+++
T Consensus 359 flwi~l~~~-~~~~~~~~~~~l~~~ll~~~gV~v~----PG~~f~~~~~g~~Rl~f~~-----~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 359 FCWVDMRHL-LKSNTFEAEMELWKKIVYEVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEETLDLAMKRLKSFV 428 (468)
T ss_pred EEEEEchHh-cCcCCchHHHHHHHHHHHhCCEEEe----CccccCCCCCCEEEEEecC-----CCHHHHHHHHHHHHHHH
Confidence 456787532 221 234556788999986 5554 33346789999654 24567777666676666
Q ss_pred H
Q 032537 80 K 80 (138)
Q Consensus 80 ~ 80 (138)
.
T Consensus 429 ~ 429 (468)
T PLN02450 429 E 429 (468)
T ss_pred H
Confidence 4
No 168
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=23.67 E-value=3.6e+02 Score=23.23 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=40.6
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++.+.+... .....+...|.+.|+.+... .+-|||- |+++ ++++|+.++.+.+.++|.
T Consensus 363 Gl~~~ve~~~~-~~~~~~~~~l~~~Gl~~~~~----------g~~i~~~-Ppl~---it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 363 GAIGVVETTRP-VNMAALQRFFVEQGVWIRPF----------GKLIYLM-PPYI---ILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred ceEEEEEeCCc-ccHHHHHHHHHHCCcEEEec----------CCEEEEe-CCCC---CCHHHHHHHHHHHHHHHh
Confidence 34455555432 24567788888899998632 1358885 5555 467999999999998885
No 169
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.64 E-value=3.8e+02 Score=23.06 Aligned_cols=61 Identities=5% Similarity=0.023 Sum_probs=43.3
Q ss_pred ceeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 5 ~tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
..+++-|.++.. .....+.+.|.+.||.+... . +-|||- |++| ++++|+.++.+.+.++|.
T Consensus 364 ~Gl~~~iel~~~-~~~~~i~~~l~e~Gi~v~~~----g------~~l~~~-Ppl~---it~~ei~~~~~~l~~~l~ 424 (429)
T PRK06173 364 LGAIGVVEMKEP-VNMATLQPRFVEHGIWVRPF----G------KLVYIM-PPFI---ISPDELSQLTSGLLRVLK 424 (429)
T ss_pred cceEEEEEeCCc-ccHHHHHHHHHHCCeEEEec----C------CEEEEe-CCcc---CCHHHHHHHHHHHHHHHH
Confidence 356666766532 24567778888889998532 1 358996 6666 468999999999999885
No 170
>PRK08363 alanine aminotransferase; Validated
Probab=23.63 E-value=4.2e+02 Score=21.88 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 20 GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 20 G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
...+.+.|.+.||.|. |+.. +...+..|||... . .++++++-.+.|.+++
T Consensus 342 ~~~~~~~l~~~gV~v~----~g~~f~~~~~~~iRis~~-~-----~~~~l~~~l~~l~~~~ 392 (398)
T PRK08363 342 KEFVLDVLHEAHVLFV----HGSGFGEYGAGHFRLVFL-P-----PVEILEEAMDRFEEFM 392 (398)
T ss_pred HHHHHHHHHhCCEEEe----CchhhCCCCCCeEEEEec-C-----CHHHHHHHHHHHHHHH
Confidence 3445778899999985 3332 2222457999963 1 3677776666665555
No 171
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=23.47 E-value=1.1e+02 Score=24.64 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=32.6
Q ss_pred CCCCCHHH-HHHHHhhcCc-eeccccCCC---CC-CCCCCCceeecChhhhhcCC
Q 032537 15 QQGIDGSR-VEKVLEAVHI-AANKNTVPG---DV-SAMVPGGIRMGTPALTSRGF 63 (138)
Q Consensus 15 ~~gl~G~~-ae~~Le~~gI-~vNkn~iP~---d~-~~~~~sGiRlGT~alTtRG~ 63 (138)
..|+||.+ |++.|+.+|| .|.-..+|| |. .|..- -|||+....-.|..
T Consensus 34 ~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP~~k-~vrLS~~vy~~~Si 87 (222)
T PF04298_consen 34 SSGMTGAEVARHILDRNGLSDVRVERVPGELTDHYDPRNK-VVRLSEDVYNGRSI 87 (222)
T ss_pred CCCCCHHHHHHHHHHHCCCCCeeEEEeCCCCCCCcCCCCC-EEEeCCccCCCCCH
Confidence 35778855 6778999999 455567777 44 55444 49998776666655
No 172
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=2e+02 Score=23.15 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=46.7
Q ss_pred CCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhHhhhhccccHHHHHHHHHHHHHHHh-hCCC
Q 032537 48 PGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAK-QFPT 126 (138)
Q Consensus 48 ~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~~~~~~~~g~~~~df~~~~~~~~~~~~~~~ir~~V~~l~~-~fp~ 126 (138)
.+.||+=..++|+|-++-.+...|=..|.++|... +++....+|.+.+-. ..+-.++...++ -||+
T Consensus 115 Gy~~RV~~~~~T~~ra~tSqk~aIRk~M~eii~~~------a~e~~f~~fv~~li~-------g~i~~~I~~~akkIyPL 181 (214)
T COG1890 115 GYVLRVKAMAFTRRRAKTSQKRAIRKIMFEIIEEK------ASELTFEEFVQELIP-------GRIAAEIEEAAKKIYPL 181 (214)
T ss_pred CcEEEEEEEEEEehhcccchHHHHHHHHHHHHHHH------hccCCHHHHHHHHhh-------hhHHHHHHHHhhhcccc
Confidence 46899999999999999999999999999988642 234556667655543 234444544444 3676
No 173
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=23.28 E-value=1.5e+02 Score=24.35 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=36.5
Q ss_pred eeEEEEeccCC-CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHH
Q 032537 6 ILLFAKMFHQQ-GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 73 (138)
Q Consensus 6 tHlvlvDlr~~-gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~ 73 (138)
.|.+.+++... +.+..++...|.+-||.+.... | ..++.|||.-+.. -+++|++.+.+
T Consensus 338 ~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~-~-----~~~~~lRis~~~~----~t~edid~~~~ 396 (398)
T cd00613 338 FHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY-L-----PVDGTLMIEPTET----ETKEELDALLE 396 (398)
T ss_pred eEEEEEEcCCcchHHHHHHHHhhhhcCccccccc-c-----CCCCeEEEEcCCC----CCHHHHHHHHH
Confidence 36677776542 4566777777888898865322 1 2246799976553 45677776654
No 174
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=23.25 E-value=3.2e+02 Score=23.60 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=39.4
Q ss_pred EEEEeccCC---C-CCH--HHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQ---G-IDG--SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~---g-l~G--~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++||++. . ..+ .-+++.|+++||.+. ||.. .+..++-+||.... +.++++++--+.|.+++.
T Consensus 366 fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~----pG~~f~~~~~g~fRi~fa~-----~~~~~l~~gl~Ri~~~l~ 436 (447)
T PLN02607 366 FCWMNLSPLLETPTREGELALWDSILREVKLNIS----PGSSCHCSEPGWFRVCFAN-----MSEDTLEVALKRIHRFMD 436 (447)
T ss_pred EEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEc----CccccCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHH
Confidence 567887642 1 112 223467788999875 6654 33457889998543 346677666666666664
No 175
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=23.19 E-value=82 Score=25.78 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=34.3
Q ss_pred eeEEEEeccCCCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCC--HHHHHHHHHHHHHHH
Q 032537 6 ILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFV--EEDFAKVAYFFDAAV 79 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~--e~dm~~IA~lI~~~l 79 (138)
+|.++--+. =+.|.+.+++++.+ .+..-+| .-|++|.|-+++.|.. ++|.+.+++.|.+-+
T Consensus 73 ~~V~VQplh--iipG~Ey~~l~~~v----~~~~~~F-------~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 73 TEVVVQPLH--IIPGEEYEKLRATV----EAYKHDF-------KKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp -EEEEEE----SCSSHHHHHHHHHH----HHHCCCS-------SEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CEEEEeecc--eeCcHhHHHHHHHH----HHhhccC-------CeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 455555443 35788888888876 2211122 3599999999987776 477888887776544
No 176
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=22.84 E-value=1.1e+02 Score=23.90 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=33.0
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCceeccccCCCCC--CCCCCCceeec-ChhhhhcCCCHHHHHHH
Q 032537 9 FAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV--SAMVPGGIRMG-TPALTSRGFVEEDFAKV 71 (138)
Q Consensus 9 vlvDlr~~gl~G~~ae~~Le~~gI~vNkn~iP~d~--~~~~~sGiRlG-T~alTtRG~~e~dm~~I 71 (138)
+++|.....-.-..+.+.|+..||.+|+- |..- ....++||+|- +.. .-++.+++.+.|
T Consensus 83 ~V~D~t~~~~~~~~~~~~l~~~gi~l~~~--~~~v~~~~~~~ggi~~~~~~~--~~~~~~~~v~~~ 144 (233)
T cd01896 83 MVLDATKPEGHREILERELEGVGIRLNKR--PPNITIKKKKKGGINITSTVP--LTKLDEKTIKAI 144 (233)
T ss_pred EEecCCcchhHHHHHHHHHHHcCceecCC--CCeEEEEEEecCCEEEeccCC--CCCCCHHHHHHH
Confidence 34564432223455778899999976653 3332 44457788874 222 224555655544
No 177
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.28 E-value=98 Score=19.14 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=15.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHH
Q 032537 58 LTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 58 lTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
=|.+|++ +|++..++-|.++.+
T Consensus 23 nTv~G~G-~Di~~~G~ai~~aA~ 44 (48)
T PRK10081 23 NTTRGVG-EDISDGGNAISGAAT 44 (48)
T ss_pred hhhhhhh-HhHHHHHHHHHHHHH
Confidence 3778887 678888877766654
No 178
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=1.7e+02 Score=25.24 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHhhcCceecc---ccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHH
Q 032537 16 QGIDGSRVEKVLEAVHIAANK---NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNk---n~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l 79 (138)
.|+...++...|.+-||.+-. +..|...--..++.+|++-.-.+| ++|+..+.+.|.+++
T Consensus 341 ~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt----~edid~l~~aL~~~~ 403 (405)
T COG0520 341 KGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT----EEDVDRLLEALKKAL 403 (405)
T ss_pred CCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCC----HHHHHHHHHHHHHHh
Confidence 477899999999999988874 444543333345669999877775 588888887776654
No 179
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=21.97 E-value=58 Score=27.09 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=38.5
Q ss_pred ccceeEEEEeccCCCCCHHHHHHHHhhcC--ceec-cccCCCCCCCCCCCceeecChhhhhcCCC
Q 032537 3 SWMILLFAKMFHQQGIDGSRVEKVLEAVH--IAAN-KNTVPGDVSAMVPGGIRMGTPALTSRGFV 64 (138)
Q Consensus 3 ~~~tHlvlvDlr~~gl~G~~ae~~Le~~g--I~vN-kn~iP~d~~~~~~sGiRlGT~alTtRG~~ 64 (138)
.|.++-||...++.....-++-+ +...+ +.+. +|..|.+..-+.+.|+||-=.|..++|.-
T Consensus 59 ~~l~~~v~~~~~~~~~~~l~~~~-~~~~~~~~~v~~~~~~~~~~d~~~~~g~RI~p~a~VR~ga~ 122 (271)
T COG2171 59 EWLKKAVLLGFGPCDLELLEAGR-LRIRGYYDKVDSVDKAPRMLDYFVPEGVRIVPGAIVRLGAY 122 (271)
T ss_pred hhhceeEEecccCcchHHHhhcc-cccccceeeccccccccchhhhcccCceeecCccEEeeccE
Confidence 36666777776654433332222 23333 3333 46667776778899999999999999863
No 180
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=21.84 E-value=3.2e+02 Score=20.81 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=32.0
Q ss_pred CCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHH
Q 032537 18 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF 68 (138)
Q Consensus 18 l~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm 68 (138)
++..+....+.++.+.+.....-+-+.. .--++-.|+|.++++.-...++
T Consensus 270 ~~~~~~~~~~~~adv~v~ps~~e~~~~~-~~Eama~G~PvI~~~~~~~~~~ 319 (375)
T cd03821 270 LYGEDKAAALADADLFVLPSHSENFGIV-VAEALACGTPVVTTDKVPWQEL 319 (375)
T ss_pred CChHHHHHHHhhCCEEEeccccCCCCcH-HHHHHhcCCCEEEcCCCCHHHH
Confidence 4567788889999988875443111111 1235788999999986654444
No 181
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=21.82 E-value=4.5e+02 Score=21.50 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=28.8
Q ss_pred eeEEEEeccCCCCCHHHHHHH-HhhcCceeccccCCCCC-CCCCCCceeecCh
Q 032537 6 ILLFAKMFHQQGIDGSRVEKV-LEAVHIAANKNTVPGDV-SAMVPGGIRMGTP 56 (138)
Q Consensus 6 tHlvlvDlr~~gl~G~~ae~~-Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~ 56 (138)
+-.+++++.+ ++++.+.... |++.||.+- |++. ....+..+||+..
T Consensus 320 ~~~~~~~l~~-~~~~~~~~~~ll~~~gi~v~----~g~~f~~~~~~~~Ris~~ 367 (383)
T TIGR03540 320 TFYVWVPVPE-GYTSAEFAARLLEETGVVVT----PGVGFGEYGEGYIRISLT 367 (383)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHHHCCEEEe----cchhhCccCCCeEEEEec
Confidence 3456777753 6777776665 578999886 3322 1112356999964
No 182
>PRK07505 hypothetical protein; Provisional
Probab=21.51 E-value=2.9e+02 Score=23.04 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 20 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 20 G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
..++.+.|.+.||.+.....|.- +...+.|||..+... +++|+.++.+.|.+++.
T Consensus 344 ~~~~~~~l~~~Gi~v~~~~~p~~--~~~~~~lRi~~~~~~----t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 344 AIKAAKQLLDRGFYTSPVFFPVV--AKGRAGLRIMFRASH----TNDEIKRLCSLLKEILD 398 (402)
T ss_pred HHHHHHHHHHCCCeEeeecCCCC--CCCCceEEEecCccC----CHHHHHHHHHHHHHHHH
Confidence 45666777788999975433321 112357999866543 56899999998888774
No 183
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=21.18 E-value=2e+02 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.9
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 56 PALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 56 ~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
..+..+|+.++.+.++...+..++..
T Consensus 194 ~g~~~~g~~~~~~~~~~~~~~~~~~~ 219 (254)
T cd03351 194 VGLKRRGFSREEIRALKRAYRILYRS 219 (254)
T ss_pred eceeecCCCHHHHHHHHHHHHHHHhc
Confidence 34467799999998888888777754
No 184
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=20.93 E-value=3.8e+02 Score=21.95 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=26.7
Q ss_pred EEEEeccCCCCCHHHHHH-HHhhcCceeccccCCCCC-CCCCCCceeecCh
Q 032537 8 LFAKMFHQQGIDGSRVEK-VLEAVHIAANKNTVPGDV-SAMVPGGIRMGTP 56 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~-~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~ 56 (138)
.+++++.. +++..+..+ .|++.||.+. |+.. .+..+..+||+..
T Consensus 324 ~~~v~~~~-~~~~~~l~~~ll~~~gi~v~----~g~~f~~~~~~~~Ris~~ 369 (385)
T PRK09276 324 YVWAPVPK-GYTSAEFATLLLDKAGVVVT----PGNGFGEYGEGYFRIALT 369 (385)
T ss_pred EEEEECCC-CCCHHHHHHHHHHhCCEEEC----CchhhCCCCCCeEEEEeC
Confidence 46777743 567776554 4577999886 4332 1112457999853
No 185
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=20.88 E-value=2.1e+02 Score=17.75 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCceeccccCCCCC-CCCCCCceeecChhhhhcCCC-HHHHHHHHHHHHH
Q 032537 20 GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFV-EEDFAKVAYFFDA 77 (138)
Q Consensus 20 G~~ae~~Le~~gI~vNkn~iP~d~-~~~~~sGiRlGT~alTtRG~~-e~dm~~IA~lI~~ 77 (138)
...+...|++.|+.|....-|.+. ..-...=|-++.. .-+. +++++.+.+|+.+
T Consensus 7 ~~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~----~~~~~~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 7 TYALYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPD----LRLSEPEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCC----CCCCchHHHHHHHHHHHc
Confidence 467889999999999987778775 2222223444433 1244 4888888888753
No 186
>PRK08637 hypothetical protein; Provisional
Probab=20.76 E-value=2.1e+02 Score=23.72 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=35.0
Q ss_pred EEEEeccCCCCCHHHHHHHH-hhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 8 LFAKMFHQQGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 8 lvlvDlr~~gl~G~~ae~~L-e~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
.+++++. +++..+....| ++.||.+.. + ..+.+||+... ..++++++-.+.|.+++.
T Consensus 328 ~~~~~l~--~~~~~~l~~~l~~~~gv~~~~----~-----~~~~iRi~~~~-----~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 328 FMCLKLK--GVDAEELRVHLLEKYGIGTIA----L-----NETDLRIAFSC-----VEEEDIPELFDSIYKAIK 385 (388)
T ss_pred EEEecCC--hHHHHHHHHHHhhhcceEEEe----c-----cCCceEEEeec-----CCHHHHHHHHHHHHHHHH
Confidence 4455764 34555555555 678997752 2 13579998654 346777777766666653
No 187
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=20.52 E-value=3.4e+02 Score=19.55 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=27.4
Q ss_pred CCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032537 45 AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 81 (138)
Q Consensus 45 ~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~ 81 (138)
.|.|++|+.=-.. .+++.++|.++.=+||..+...
T Consensus 16 ~F~p~~V~~P~~~--f~~~~~kd~~ea~~F~~kV~~q 50 (109)
T PF11690_consen 16 GFEPGQVLFPHAV--FRHLPSKDKKEAYDFIDKVVDQ 50 (109)
T ss_pred ccccccccCHHHH--HccCCHHHHHHHHHHHHHHHHH
Confidence 4678888865333 3999999999999999887754
No 188
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=20.34 E-value=3.6e+02 Score=22.40 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=37.3
Q ss_pred eEEEEeccCC--CCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHH
Q 032537 7 LLFAKMFHQQ--GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 80 (138)
Q Consensus 7 HlvlvDlr~~--gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~ 80 (138)
+++.+.+... +++.....+.+ +.||.+..-... . ...++|+|....++ ++|+..+.+.|.+++.
T Consensus 307 ~i~~~~~~~~~~~~~~~~~~~l~-~~~i~v~~g~~~-~----~~~~vRis~~~~~t----~~di~~l~~al~~~~~ 372 (378)
T PRK03080 307 TSVTLDFVDAQAAVDAAAVAKLL-RENGAVDIEPYR-D----APNGLRIWCGPTVE----PADVEALTPWLDWAFE 372 (378)
T ss_pred cEEEEEcCCchHHHHHHHHHHHH-HcCCeecccccc-C----CCCcEEEecCCCCC----HHHHHHHHHHHHHHHH
Confidence 3555554320 23444444444 447776532111 1 24689999765544 7999999988887764
No 189
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.27 E-value=2.5e+02 Score=22.81 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHhhcCceeccccCCCCCCCCCCCceeecChhhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 032537 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 83 (138)
Q Consensus 16 ~gl~G~~ae~~Le~~gI~vNkn~iP~d~~~~~~sGiRlGT~alTtRG~~e~dm~~IA~lI~~~l~~~~ 83 (138)
.||.+--++++|-++||. |.....-++++|.+.|.+-|.+++..+.
T Consensus 168 aGiGNiya~EiLf~a~i~----------------------P~~~~~~l~~~~~~~l~~a~~~vl~~ai 213 (272)
T PRK14810 168 RGVGNIYADEALFRAGIR----------------------PQRLASSLSRERLRKLHDAIGEVLREAI 213 (272)
T ss_pred ccccHhHHHHHHHHcCCC----------------------CCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 377777778888877773 3334556789999999998888887654
Done!