RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032537
(138 letters)
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism;
HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP:
c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A*
1bj4_A* 1eji_A*
Length = 483
Score = 149 bits (379), Expect = 3e-44
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F
Sbjct: 365 KGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFI 424
Query: 76 DAAVKLTVKIKSET-QGTKLKDFVATTQS-ANFQSEIAKRCHDVEEYAKQFPTIGFE 130
++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 425 HRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLP 481
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural
genomics consortium, SGC; 2.04A {Homo sapiens} SCOP:
c.67.1.4 PDB: 3ou5_A
Length = 490
Score = 148 bits (375), Expect = 1e-43
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 75
+G+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V F
Sbjct: 375 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 434
Query: 76 DAAVKLTVKIKSETQGTKLKDFVATT-QSANFQSEIAKRCHDVEEYAKQFPTIGFEK 131
D V + +++KS+T KL+DF + + + +A VE++A+ FP GF++
Sbjct: 435 DEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 489
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 82.2 bits (204), Expect = 1e-19
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+G+ G E+ L+AV I NKN +P D V GIR+GTPA+T+RGF E+ VA
Sbjct: 321 KGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAEL 380
Query: 75 FDAAVK 80
D A+
Sbjct: 381 IDRALL 386
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 81.1 bits (201), Expect = 3e-19
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
Q + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF E+ ++A
Sbjct: 320 QQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAI 379
Query: 75 FDAAVK 80
+K
Sbjct: 380 IGLVLK 385
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 81.1 bits (201), Expect = 3e-19
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+DG E +L V I N+N VP D MV G+R+GTPAL +RGF + +F +VA
Sbjct: 347 SPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADI 406
Query: 75 FDAAVK 80
A+
Sbjct: 407 IATALA 412
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 80.3 bits (199), Expect = 7e-19
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+ + G + L +I NKN+VP D S V GIR+G+PA+T RGF E + ++A +
Sbjct: 329 KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGW 388
Query: 75 FDAAVK 80
+
Sbjct: 389 MCDVLD 394
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 80.0 bits (198), Expect = 8e-19
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+G+ G++VE+ LE I NKN +P D + GIR+GTPA T+RGF +F +V
Sbjct: 330 KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRL 389
Query: 75 FDAAVK 80
+
Sbjct: 390 ILEVFE 395
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 79.6 bits (197), Expect = 1e-18
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 74
+ G + L I ANKNTVPG+ S + G+R+GTPALT+RGF E++ V+ +
Sbjct: 322 REFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNY 381
Query: 75 FDAAVK 80
+
Sbjct: 382 IADILD 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.006
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 47/142 (33%)
Query: 1 MKSWMILLFAKMF--HQQGIDGS--------------RVEKVLEAVHI--AANKNTVPGD 42
+KS ++ F H S +E ++E V + VP D
Sbjct: 1747 LKSKGLIPADATFAGH------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 43 VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQ 102
G+ P + F +E V V+ ++ T V +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYV-------VE---RVGKRTGW-----LV---E 1842
Query: 103 SANFQSE-----IAKRCHDVEE 119
N+ E A ++
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDT 1864
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.7
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 24/52 (46%)
Query: 15 QQGIDGSRVEKVLEA-VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVE 65
+Q + K L+A + + A SA PAL + +E
Sbjct: 19 KQAL------KKLQASLKLYA-----DD--SA----------PALAIKATME 47
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 26.8 bits (58), Expect = 2.2
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 15 QQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTP 56
G+ R+ + + TVP S G++ G
Sbjct: 128 YYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVD 169
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 26.9 bits (60), Expect = 2.3
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 26 VLEAVHIAANKNTVPGDVSAMVPGGIRMGT 55
VL + + + V GG+R GT
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGT 416
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 26.8 bits (59), Expect = 2.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 125 PTIGFEKETMKYK 137
PT+GF ET+ YK
Sbjct: 352 PTVGFNVETVTYK 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 26.4 bits (59), Expect = 2.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 118 EEYAKQFPTIGFEKETMKYKS 138
E PTIGF ET++YK+
Sbjct: 23 GEIVTTIPTIGFNVETVEYKN 43
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.0 bits (58), Expect = 3.3
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 118 EEYAKQFPTIGFEKETMKYK 137
E+ + PT GF ++++ +
Sbjct: 39 EDISHITPTQGFNIKSVQSQ 58
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 26.4 bits (59), Expect = 3.6
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDV 43
+ + G+ S V +AVH A + GDV
Sbjct: 384 RVKRAAQKAGVTYSDALDVRDAVHKAY-EVAQQGDV 418
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.4 bits (58), Expect = 3.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 125 PTIGFEKETMKYK 137
PTIGF ET++YK
Sbjct: 195 PTIGFNVETVEYK 207
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer,
structural genomics, PSI, structure initiative; NMR
{Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Length = 76
Score = 24.8 bits (54), Expect = 4.2
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS-----RGFVEEDFAKV 71
RVEK+++ + K V D++ M G T + R V ++F K
Sbjct: 11 RVEKIIQDLLDVLVKEEVTPDLALMCLG--NAVTNIIAQVPESKRVAVVDNFTKA 63
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 25.7 bits (57), Expect = 4.3
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 118 EEYAKQFPTIGFEKETMKYK 137
E PTIG E +
Sbjct: 44 NEVVHTSPTIGSNVEEIVIN 63
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 25.7 bits (57), Expect = 5.6
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 118 EEYAKQFPTIGFEKETMKYK 137
E+ PT+GF +T++++
Sbjct: 41 EDVDTISPTLGFNIKTLEHR 60
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 25.3 bits (56), Expect = 6.3
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 118 EEYAKQFPTIGFEKETMKYK 137
E PTIG E +
Sbjct: 39 NEVVHTSPTIGSNVEEIVIN 58
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 25.3 bits (56), Expect = 6.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 125 PTIGFEKETMKYK 137
PTIGF E K
Sbjct: 53 PTIGFSIEKFKSS 65
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 25.2 bits (56), Expect = 6.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 118 EEYAKQFPTIGFEKETMKYKS 138
E PTIGF ET+ YK+
Sbjct: 30 GEVVTTIPTIGFNVETVTYKN 50
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid
ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus
horikoshii} SCOP: c.55.3.1
Length = 220
Score = 25.3 bits (56), Expect = 6.5
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 108 SEIAK--RCHDVEEYAKQFPTIGFEK 131
S IAK R ++E+ +++ G
Sbjct: 145 SIIAKVTRDREIEKLKQKYGEFGSGY 170
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 25.3 bits (56), Expect = 6.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 125 PTIGFEKETMKYK 137
PTIGF ET++YK
Sbjct: 59 PTIGFNVETVEYK 71
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix,
hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1
PDB: 1i3a_A 3p83_D*
Length = 225
Score = 25.3 bits (56), Expect = 7.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 108 SEIAK--RCHDVEEYAKQFPTIGFEK 131
S IAK R ++E ++F G
Sbjct: 159 SIIAKVEREREIERLKEKFGDFGSGY 184
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha,
northeast structural GEN consortium, NESG, structural
genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1
PDB: 2qti_A
Length = 80
Score = 24.4 bits (53), Expect = 8.0
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 71
+VE ++ + + K+ P D+S M G + SR V E FAK
Sbjct: 11 QVESLIAEILVVLEKHKAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFAKA 64
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural
genomics, PSI-2, protein initiative, northeast
structural genomics consortium, NESG; NMR {Escherichia
coli} SCOP: a.284.1.1
Length = 83
Score = 24.5 bits (53), Expect = 8.1
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 71
+VE++L + K+ P D+S MV G + + A R + FA+
Sbjct: 11 QVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARA 64
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54
modulation protein family, structural genomics; 2.64A
{Thermus thermophilus} SCOP: d.204.1.1
Length = 105
Score = 24.5 bits (54), Expect = 8.2
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 55 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVA 99
T A+ R +VE+ A++ + D + V + K A
Sbjct: 14 TDAI--RDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARA 56
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural
genomics, PSI-2, protein structure initiative; NMR
{Vibrio parahaemolyticus} SCOP: a.284.1.1
Length = 83
Score = 24.4 bits (53), Expect = 8.4
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 71
+VEK+L V + K+ +++ M+ G + A + R + E FA+
Sbjct: 11 QVEKILAEVALVLEKHAASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFAQA 64
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics,
PSI-2, protein structure initiative; NMR {Haemophilus
influenzae} SCOP: a.284.1.1
Length = 80
Score = 24.0 bits (52), Expect = 8.5
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 71
++ ++ + K+ P D+S + G + + T + + F+
Sbjct: 11 QLSAIVNDMIAVLEKHKAPVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNS 64
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 25.3 bits (56), Expect = 8.7
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 20 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 79
G K+ A +A D+ + I + +++ED++ AY + +
Sbjct: 474 GKGAAKLRVAGVVAPTLPR--EDLEKI----IA----HFLIQQYLKEDYSFTAYATISYL 523
Query: 80 KLTVK 84
K+ K
Sbjct: 524 KIGPK 528
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 24.8 bits (55), Expect = 9.0
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 125 PTIGFEKETMKYK 137
PT E +
Sbjct: 53 PTWHPTSEELAIG 65
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 24.9 bits (55), Expect = 9.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 118 EEYAKQFPTIGFEKETMKYKS 138
+ PT+G ET++YK+
Sbjct: 45 GDVVTTVPTVGVNLETLQYKN 65
>4fyl_A Ribosome hibernation protein YHBH;
beta-alpha-beta-BETA-beta-alpha secondary structure
fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio
cholerae}
Length = 95
Score = 24.1 bits (53), Expect = 9.9
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 55 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 88
T ++ + +V F K+ FFD + V ++ E
Sbjct: 13 TDSM--QDYVHSKFDKLERFFDHINHVQVILRVE 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,051,420
Number of extensions: 111530
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 50
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)