RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032537
(138 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 120 bits (303), Expect = 6e-34
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G DG R EKVLEA IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA
Sbjct: 349 LRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVA 408
Query: 73 YFFDAAVKLTVKIKSETQ-GTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGFE 130
+F ++LTV+I+ +T LK+F Q + +VE +A FP G
Sbjct: 409 HFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLP 468
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 115 bits (288), Expect = 6e-32
Identities = 54/120 (45%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Query: 13 FHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 72
+G+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V
Sbjct: 345 LRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV 404
Query: 73 YFFDAAVKLTVKIKSETQGTKLKDFVAT-TQSANFQSEIAKRCHDVEEYAKQFPTIGFEK 131
F D V + +++KS+T KL+DF + + + +A VE++A+ FP GF++
Sbjct: 405 DFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 462
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 92.0 bits (228), Expect = 1e-23
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 12 MFHQQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAK 70
+ + G + L +I NKN+VP D S V GIR+GTPA+T RGF E + +
Sbjct: 321 DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKE 380
Query: 71 VAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFP 125
+A + + S N ++ I + V + ++P
Sbjct: 381 LAGWMCDVLD----------------------SINDEAVIERIKGKVLDICARYP 413
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 90.8 bits (225), Expect = 3e-23
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 8 LFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEE 66
L Q + G EKVL+ V I NKNT+P D S V GIR+GT A+T+RGF E
Sbjct: 312 LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLE 371
Query: 67 DFAKVAYFFDAAVK 80
+ ++A +K
Sbjct: 372 EMDEIAAIIGLVLK 385
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 43.0 bits (100), Expect = 3e-06
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 5 MILLFAKMFHQQGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTP-----ALT 59
L + Q + ++ + I A + G +
Sbjct: 360 AGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419
Query: 60 SRGFVEEDFAKVAYFFDAAVKLTVKIKSET---QGTKLKDFVA 99
+ + + F + IK T + L+ F A
Sbjct: 420 RATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTA 462
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 37.6 bits (86), Expect = 2e-04
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 14/95 (14%)
Query: 16 QGIDGSRVEKVLEAVHIAANKNTVP--------GDVSAMVPGGIRMGTPALTSRGFVEED 67
Q + + + + A + G+ +R+ R + +
Sbjct: 369 QFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIAR---RVYTNDH 425
Query: 68 FAKVAYFFDAAVKLTVKIKSET---QGTKLKDFVA 99
+A + +K + L+ F A
Sbjct: 426 MDYIADALIGLKEKFATLKGLEFEYEPPVLRHFTA 460
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 24.8 bits (54), Expect = 4.4
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 64 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIA 111
V + V + KL K+ + GT + A + AN+ A
Sbjct: 27 VTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDPCA 74
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA
homologue) {Thermus thermophilus [TaxId: 274]}
Length = 95
Score = 24.0 bits (52), Expect = 4.8
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 55 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVA 99
T A+ R +VE+ A++ + D + V + K A
Sbjct: 14 TDAI--RDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARA 56
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611
{Colwellia psychrerythraea [TaxId: 28229]}
Length = 62
Score = 23.1 bits (50), Expect = 6.2
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 22 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS-----RGFVEEDFAKV 71
RVEK+++ + K V D++ M G T + R V ++F K
Sbjct: 5 RVEKIIQDLLDVLVKEEVTPDLALMCLGN--AVTNIIAQVPESKRVAVVDNFTKA 57
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major
capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Length = 103
Score = 23.8 bits (51), Expect = 6.2
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 30 VHIAANKNTVPGDVSAMVPGGIRMGTPALT 59
V I A + +A GI TPALT
Sbjct: 1 VRIFAGNDPA---HTATGSSGISSPTPALT 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,727
Number of extensions: 19348
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 18
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)