Query 032539
Match_columns 138
No_of_seqs 109 out of 299
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14547 Hydrophob_seed: Hydro 100.0 1.3E-36 2.8E-41 216.3 4.6 85 52-137 1-85 (85)
2 cd01958 HPS_like HPS_like: Hyd 100.0 1.2E-36 2.6E-41 216.6 -0.1 84 51-136 2-85 (85)
3 smart00499 AAI Plant lipid tra 96.1 0.0011 2.5E-08 42.8 -0.4 74 55-136 3-79 (79)
4 PF14368 LTP_2: Probable lipid 96.1 0.00029 6.2E-09 48.5 -3.7 56 77-136 40-96 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 95.4 0.0015 3.3E-08 44.3 -2.1 63 57-132 3-65 (66)
6 cd04660 nsLTP_like nsLTP_like: 94.2 0.0084 1.8E-07 40.6 -1.0 68 58-136 6-73 (73)
7 PF00234 Tryp_alpha_amyl: Prot 89.3 0.037 8E-07 37.8 -2.4 68 58-136 13-90 (90)
8 PF07172 GRP: Glycine rich pro 89.2 0.38 8.2E-06 34.8 2.7 6 1-6 1-6 (95)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 88.2 0.11 2.4E-06 33.4 -0.6 48 78-127 14-62 (63)
10 cd01960 nsLTP1 nsLTP1: Non-spe 77.5 0.34 7.4E-06 33.5 -1.7 67 58-131 8-79 (89)
11 PRK10781 rcsF outer membrane l 23.6 1.6E+02 0.0035 22.7 4.3 7 122-128 105-111 (133)
12 PF15240 Pro-rich: Proline-ric 22.8 60 0.0013 26.3 1.9 17 10-26 2-18 (179)
No 1
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=1.3e-36 Score=216.26 Aligned_cols=85 Identities=60% Similarity=1.217 Sum_probs=83.2
Q ss_pred CCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539 52 TCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 52 ~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P 131 (138)
+||+|++||++|+||| |++++.+|.|++++||++|+||+|+|||+|||+|+|+|+||+|++++|+++++++|.|||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 032539 132 AGFKCP 137 (138)
Q Consensus 132 ~gf~C~ 137 (138)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 2
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=1.2e-36 Score=216.62 Aligned_cols=84 Identities=54% Similarity=1.099 Sum_probs=81.7
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCC
Q 032539 51 QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHV 130 (138)
Q Consensus 51 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~ 130 (138)
++||+|++|||+|+|||+ ++++.+|+++.++||++|+||+|+|||+|||||||+|+|| |++|+|+++++++|.|||++
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence 589999999999999995 8899999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcC
Q 032539 131 PAGFKC 136 (138)
Q Consensus 131 P~gf~C 136 (138)
|+||+|
T Consensus 80 P~gf~C 85 (85)
T cd01958 80 PPGFTC 85 (85)
T ss_pred CCCCcC
Confidence 999998
No 3
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.14 E-value=0.0011 Score=42.77 Aligned_cols=74 Identities=31% Similarity=0.635 Sum_probs=48.2
Q ss_pred ccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhcccee---eeccchhhHhhhhcCCCCC
Q 032539 55 IDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVN---LLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 55 ~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~---~~ipv~l~llln~CGk~~P 131 (138)
....++..|.+.+.+.. ....+.++||..++++. ...|+|.+++..+.+.+. ++.. ....|.+.||...|
T Consensus 3 ~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~~-~a~~lp~~C~~~~~ 75 (79)
T smart00499 3 QVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNAQ-NAASLPSACGVPPP 75 (79)
T ss_pred hhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhHH-HHHhhHHhcCCCCC
Confidence 33445556766553211 12346788999999887 677999999988766221 2333 45568889999887
Q ss_pred CCCcC
Q 032539 132 AGFKC 136 (138)
Q Consensus 132 ~gf~C 136 (138)
. +.|
T Consensus 76 ~-~~C 79 (79)
T smart00499 76 Y-TDC 79 (79)
T ss_pred C-CCC
Confidence 5 544
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.07 E-value=0.00029 Score=48.46 Aligned_cols=56 Identities=30% Similarity=0.651 Sum_probs=34.1
Q ss_pred CCCCCCCCcccccccccchhhhhHHHHhhhh-ccceeeeccchhhHhhhhcCCCCCCCCcC
Q 032539 77 GNPKEKCCPLLQGLADLDAAICLCTAIRLKA-LNLVNLLVPVSLNVLVNDCGKHVPAGFKC 136 (138)
Q Consensus 77 ~p~~~~CC~li~gL~d~dAA~CLCtAiKanv-Lg~i~~~ipv~l~llln~CGk~~P~gf~C 136 (138)
..+.+.||.-++.+.+.| ..|||..++... .+ +++|..-.+ .|...||...|. ++|
T Consensus 40 ~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~-~~in~~~a~-~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 40 PAPSAACCSALKSVVQAD-PPCLCQLLNSPGAPG-FGINVTRAL-ALPAACGVPVPP-SKC 96 (96)
T ss_dssp ----HHHHHHHCC----H-CCHHHCCCC-CCHCH-HCCTCHHHH-HHHHHCTSS-S-----
T ss_pred CCCCHHHHHHHHHhccCC-CCCHHHhcCcccccc-CCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence 457788999999997744 999999999987 44 556655445 478899999998 877
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=95.43 E-value=0.0015 Score=44.30 Aligned_cols=63 Identities=25% Similarity=0.552 Sum_probs=46.5
Q ss_pred ccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCCC
Q 032539 57 ALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPA 132 (138)
Q Consensus 57 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P~ 132 (138)
..+|..|..... .|.++.++||..+.. +.-|||.-+|...|+ .-||.+-+.+ |.+.||..+|.
T Consensus 3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~-l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARK-VLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHH-HHHHcCCCCCC
Confidence 347888887542 356788999999996 237999999887666 3455666555 78899999863
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=94.17 E-value=0.0084 Score=40.57 Aligned_cols=68 Identities=25% Similarity=0.460 Sum_probs=45.1
Q ss_pred cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCCCCCcC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKC 136 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P~gf~C 136 (138)
..|..|...+.+ -.-..++.+.||+-|+.+ |. .|+|..++...+.. ||..- ...|...||..+|. ++|
T Consensus 6 ~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~~-a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 6 DLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPDK-AVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred HHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHHH-HHHHHHHcCCCCCC-CCC
Confidence 356667665521 000113567799999974 32 39999999876652 44443 44588999999999 887
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=89.29 E-value=0.037 Score=37.80 Aligned_cols=68 Identities=28% Similarity=0.609 Sum_probs=46.6
Q ss_pred cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccce----------eeeccchhhHhhhhcC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLV----------NLLVPVSLNVLVNDCG 127 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i----------~~~ipv~l~llln~CG 127 (138)
..+..|...+.+- - ..+.+.||.-|++| -..|.|.+||..+.+++ .++.. ...-|.+.||
T Consensus 13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTT
T ss_pred ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCC
Confidence 4466676655321 1 13557799999988 88999999999987721 34443 3555888999
Q ss_pred CCCCCCCcC
Q 032539 128 KHVPAGFKC 136 (138)
Q Consensus 128 k~~P~gf~C 136 (138)
..+|. |.|
T Consensus 83 v~~~~-~~C 90 (90)
T PF00234_consen 83 VSPPY-TDC 90 (90)
T ss_dssp SSSSS-S-G
T ss_pred CCCCC-CCC
Confidence 99887 555
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.15 E-value=0.38 Score=34.85 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=4.7
Q ss_pred Cchhhh
Q 032539 1 MAKYQL 6 (138)
Q Consensus 1 Ma~~~~ 6 (138)
||||++
T Consensus 1 MaSK~~ 6 (95)
T PF07172_consen 1 MASKAF 6 (95)
T ss_pred CchhHH
Confidence 998863
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=88.23 E-value=0.11 Score=33.37 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=31.5
Q ss_pred CCCCCCCcccccccccchhhhhHHHHhhhhccceee-eccchhhHhhhhcC
Q 032539 78 NPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNL-LVPVSLNVLVNDCG 127 (138)
Q Consensus 78 p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~-~ipv~l~llln~CG 127 (138)
.+.++||.-++.+.+.| ..|||..+|........+ |.. ....|.+.||
T Consensus 14 ~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~~-~a~~LP~~Cg 62 (63)
T cd00010 14 APPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNAT-RALALPAACG 62 (63)
T ss_pred CCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccHH-HHHhchHhcC
Confidence 46788999999887664 469999999866431111 222 2334666776
No 10
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=77.46 E-value=0.34 Score=33.48 Aligned_cols=67 Identities=25% Similarity=0.517 Sum_probs=42.0
Q ss_pred cCccccccccccccccccCCCCCCCCCccccccccc----chhhhhHHHHhhhhcccee-eeccchhhHhhhhcCCCCC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL----DAAICLCTAIRLKALNLVN-LLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAA~CLCtAiKanvLg~i~-~~ipv~l~llln~CGk~~P 131 (138)
.+|.-|.+.+.|- +..+..+||.-++.|.+. +...|+|.-+|....+ +. +|....++ |-..||-..|
T Consensus 8 ~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~~-LP~~C~v~~~ 79 (89)
T cd01960 8 SLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAAG-LPGKCGVSIP 79 (89)
T ss_pred hhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHHh-ChHhcccCCC
Confidence 4677787776431 134668899999998654 2234666667766655 33 44444443 7778988754
No 11
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=23.65 E-value=1.6e+02 Score=22.71 Aligned_cols=7 Identities=29% Similarity=0.766 Sum_probs=3.1
Q ss_pred hhhhcCC
Q 032539 122 LVNDCGK 128 (138)
Q Consensus 122 lln~CGk 128 (138)
|+..|..
T Consensus 105 vl~~C~~ 111 (133)
T PRK10781 105 LLHSCEI 111 (133)
T ss_pred EEEEeec
Confidence 3444543
No 12
>PF15240 Pro-rich: Proline-rich
Probab=22.81 E-value=60 Score=26.31 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhcCCC
Q 032539 10 LILLLNLGTLLPSLASD 26 (138)
Q Consensus 10 l~l~lnl~~~~~~~~~~ 26 (138)
|++||+..||+++||..
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 56677777777777654
Done!