Query 032539
Match_columns 138
No_of_seqs 109 out of 299
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 6.3E-31 2.1E-35 184.4 0.8 74 51-138 6-79 (80)
2 1n89_A Lipid transfer protein; 95.2 0.00097 3.3E-08 43.9 -2.7 61 58-131 5-65 (67)
3 1l6h_A LTP2, non-specific lipi 94.2 0.0028 9.7E-08 41.8 -2.3 61 58-131 6-66 (69)
4 2rkn_A DIR1 protein, AT5G48485 93.1 0.0059 2E-07 40.7 -2.2 70 51-132 3-75 (77)
5 1siy_A LTP 1, NS-LTP1, nonspec 87.8 0.023 7.9E-07 39.1 -3.3 69 53-131 3-78 (91)
6 2alg_A Non-specific lipid tran 85.0 0.08 2.7E-06 36.4 -1.7 65 58-131 9-79 (92)
7 2ljo_A Non-specific lipid-tran 84.1 0.1 3.5E-06 36.3 -1.5 59 78-137 23-89 (93)
8 1bwo_A NS-LTP1, nonspecific li 83.1 0.079 2.7E-06 36.4 -2.4 65 58-131 8-78 (90)
9 1afh_A Maize nonspecific lipid 76.0 0.095 3.2E-06 36.1 -3.9 71 53-131 4-80 (93)
10 1t12_A LTP 1, nonspecific lipi 61.5 1.7 5.8E-05 29.7 0.0 65 57-131 8-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=6.3e-31 Score=184.40 Aligned_cols=74 Identities=41% Similarity=1.040 Sum_probs=66.7
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCC
Q 032539 51 QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHV 130 (138)
Q Consensus 51 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~ 130 (138)
++|| |||+|+|||||++ | +.++||++|+||+|+|||+||||||| +|| | +|+|+++++|+|.|||++
T Consensus 6 ~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lg-i-lnlpv~L~llln~Cgk~~ 71 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALG-I-LNLNRNLQLILNSCGRSY 71 (80)
T ss_dssp CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHT-C-SCHHHHHHHHHHHTTCSS
T ss_pred CCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccc-e-eecChhHHHHHHHhCCcC
Confidence 4799 8999999997543 2 56789999999999999999999999 489 7 889999999999999999
Q ss_pred CCCCcCCC
Q 032539 131 PAGFKCPT 138 (138)
Q Consensus 131 P~gf~C~~ 138 (138)
|+||+|+.
T Consensus 72 P~gF~C~~ 79 (80)
T 1hyp_A 72 PSNATCPR 79 (80)
T ss_dssp CCCCCCSC
T ss_pred cCCCCCCC
Confidence 99999974
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=95.18 E-value=0.00097 Score=43.91 Aligned_cols=61 Identities=23% Similarity=0.553 Sum_probs=44.6
Q ss_pred cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P 131 (138)
.+|..|...+. -|.++..+||.-+++ +..|+|..+|...++ ..||.+.+.+ |...||..+|
T Consensus 5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARD-TLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHH-HHHHHTSCCS
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence 35677877552 234577789999984 488999999976665 4456665666 7789999987
No 3
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=94.20 E-value=0.0028 Score=41.84 Aligned_cols=61 Identities=23% Similarity=0.535 Sum_probs=44.6
Q ss_pred cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P 131 (138)
.+|..|...+. -|.++..+||.-+++ ...|||..+|...++ ..||.+.+.+ |...||..+|
T Consensus 6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P 66 (69)
T 1l6h_A 6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARK-AVSSCGIALP 66 (69)
T ss_dssp TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGG-CCCCCSSCSC
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence 35677877652 234577789999984 489999999876655 4556666666 7789999987
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=93.13 E-value=0.0059 Score=40.75 Aligned_cols=70 Identities=26% Similarity=0.490 Sum_probs=46.7
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHh---hhhccceeeeccchhhHhhhhcC
Q 032539 51 QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIR---LKALNLVNLLVPVSLNVLVNDCG 127 (138)
Q Consensus 51 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiK---anvLg~i~~~ipv~l~llln~CG 127 (138)
..|-.+..+|..|...+.+ +-..++...||.-+++ +| ..|||..++ +.-+| | |...++. |...||
T Consensus 3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~g-i--n~~~A~~-LP~~Cg 70 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFG-V--DPELASA-LPKQCG 70 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHT-B--CHHHHHH-HHHHTT
T ss_pred chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcC-c--CHHHHHH-HHHHcC
Confidence 3576666778888876631 1013466779999998 33 389999888 33344 4 4454555 778999
Q ss_pred CCCCC
Q 032539 128 KHVPA 132 (138)
Q Consensus 128 k~~P~ 132 (138)
..+|.
T Consensus 71 v~~p~ 75 (77)
T 2rkn_A 71 LANAP 75 (77)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 98763
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=87.75 E-value=0.023 Score=39.13 Aligned_cols=69 Identities=26% Similarity=0.538 Sum_probs=43.6
Q ss_pred CCccccCccccccccccccccccCCCCCCCCCccccccccc-----c-hhhhhHHHHhhhhccce-eeeccchhhHhhhh
Q 032539 53 CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL-----D-AAICLCTAIRLKALNLV-NLLVPVSLNVLVND 125 (138)
Q Consensus 53 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----d-AA~CLCtAiKanvLg~i-~~~ipv~l~llln~ 125 (138)
|-....+|..|.+.+.| |.++...||.-+++|.+. | -+.|+|. |...-+ + .||...+.. |...
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~-LP~~ 72 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEA-LPGK 72 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHH-HHHH
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHH-HHHH
Confidence 44444567778776632 233667799999988543 3 2689997 433222 2 345555555 7889
Q ss_pred cCCCCC
Q 032539 126 CGKHVP 131 (138)
Q Consensus 126 CGk~~P 131 (138)
||..+|
T Consensus 73 Cgv~~p 78 (91)
T 1siy_A 73 CGVNIP 78 (91)
T ss_dssp HTCCCS
T ss_pred cCCCCC
Confidence 999876
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=85.03 E-value=0.08 Score=36.44 Aligned_cols=65 Identities=25% Similarity=0.547 Sum_probs=43.2
Q ss_pred cCccccccccccccccccCCCCCCCCCccccccccc-----ch-hhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL-----DA-AICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----dA-A~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P 131 (138)
.+|..|.+.+.| |.++...||.-+++|.+. |. +.|||...++.-++ .||...+.. |...||-.+|
T Consensus 9 ~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~-LP~~Cgv~~p 79 (92)
T 2alg_A 9 SSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAA-LPGKCGVSIP 79 (92)
T ss_dssp HHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHH-HHHHTTCCCS
T ss_pred HhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHH-HHHHcCCCCC
Confidence 457778776531 224555799999987632 22 68999977776663 344454555 7889999876
No 7
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=84.06 E-value=0.1 Score=36.30 Aligned_cols=59 Identities=20% Similarity=0.461 Sum_probs=40.3
Q ss_pred CCCCCCCcccccccccc----hhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC----CCCcCC
Q 032539 78 NPKEKCCPLLQGLADLD----AAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP----AGFKCP 137 (138)
Q Consensus 78 p~~~~CC~li~gL~d~d----AA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P----~gf~C~ 137 (138)
.+..+||.-+++|.+.- .-.|+|..+|...-+...||..-+.. |-..||-.+| ..+.|.
T Consensus 23 ~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~-LP~~CgV~~p~~Is~~~dC~ 89 (93)
T 2ljo_A 23 GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAA-LPGKCGVNIPYKISTTTNCN 89 (93)
T ss_dssp CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHH-HHHHHTCCCSSCCSTTCCGG
T ss_pred CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHh-hhHhcCCCCCCCCCCCCCCC
Confidence 35678999888776532 24699999987654423455554554 8889999988 566664
No 8
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=83.06 E-value=0.079 Score=36.39 Aligned_cols=65 Identities=22% Similarity=0.528 Sum_probs=40.3
Q ss_pred cCccccccccccccccccCCCCCCCCCccccccccc---c---hhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539 58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL---D---AAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP 131 (138)
Q Consensus 58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~---d---AA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P 131 (138)
.+|..|.+.+.| |.++..+||.-+++|.+. . -+.|+|..-.+.-++ .||...+.. |...||-.+|
T Consensus 8 ~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C~v~~p 78 (90)
T 1bwo_A 8 SLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNEDNARS-IPPKCGVNLP 78 (90)
T ss_dssp HHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT--TCCHHHHHT-HHHHHTCCCS
T ss_pred HhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC--CcCHHHHHH-HHHHcCCCCC
Confidence 456778776632 223666799999987632 1 278999533333331 344454554 7789999876
No 9
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=75.97 E-value=0.095 Score=36.12 Aligned_cols=71 Identities=24% Similarity=0.542 Sum_probs=44.0
Q ss_pred CCccccCccccccccccccccccCCCCCCCCCcccccccc---cch---hhhhHHHHhhhhccceeeeccchhhHhhhhc
Q 032539 53 CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLAD---LDA---AICLCTAIRLKALNLVNLLVPVSLNVLVNDC 126 (138)
Q Consensus 53 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d---~dA---A~CLCtAiKanvLg~i~~~ipv~l~llln~C 126 (138)
|-....+|..|.+.+.| -+..+...||.-+++|.+ -.+ +.|+|....+.-++ .||...++. |-..|
T Consensus 4 C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~--~in~~~A~~-LP~~C 75 (93)
T 1afh_A 4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS--GLNAGNAAS-IPSKC 75 (93)
T ss_dssp SHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST--TCCHHHHHH-HHHHH
T ss_pred hHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc--CcCHHHHHH-HHHHc
Confidence 33334467778776632 123355679999998853 222 68999765555442 344454555 77899
Q ss_pred CCCCC
Q 032539 127 GKHVP 131 (138)
Q Consensus 127 Gk~~P 131 (138)
|-.+|
T Consensus 76 ~v~~p 80 (93)
T 1afh_A 76 GVSIP 80 (93)
T ss_dssp HCCCS
T ss_pred CCCCC
Confidence 98765
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=61.50 E-value=1.7 Score=29.66 Aligned_cols=65 Identities=22% Similarity=0.505 Sum_probs=40.4
Q ss_pred ccCccccccccccccccccCCCCCCCCCcccccccccc------hhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCC
Q 032539 57 ALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLD------AAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHV 130 (138)
Q Consensus 57 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~d------AA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~ 130 (138)
..+|..|.+.+.| -+. +. .||.-+++|.+.- -+.|+|..--++-++ .||...++. |-..||-.+
T Consensus 8 ~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C~v~~ 77 (91)
T 1t12_A 8 TSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAG-LPSTCGVNI 77 (91)
T ss_dssp HHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT--TCCHHHHHH-HHHHTTCCC
T ss_pred HHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC--CcChhHHHH-HHHHcCCCC
Confidence 3456777776632 122 55 8999999886531 278999633334442 344444555 778999987
Q ss_pred C
Q 032539 131 P 131 (138)
Q Consensus 131 P 131 (138)
|
T Consensus 78 p 78 (91)
T 1t12_A 78 P 78 (91)
T ss_dssp S
T ss_pred C
Confidence 6
Done!