Query 032540
Match_columns 138
No_of_seqs 186 out of 1129
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01518 RHOD_YceA Member of th 99.9 4.1E-26 8.8E-31 143.7 9.1 98 6-112 2-101 (101)
2 PRK00162 glpE thiosulfate sulf 99.9 4.6E-26 9.9E-31 145.1 8.6 104 4-120 3-106 (108)
3 cd01533 4RHOD_Repeat_2 Member 99.9 3.3E-26 7.2E-31 146.0 7.9 100 4-114 8-109 (109)
4 PLN02160 thiosulfate sulfurtra 99.9 1.5E-25 3.3E-30 148.2 9.0 112 4-125 13-134 (136)
5 cd01527 RHOD_YgaP Member of th 99.9 1.9E-25 4E-30 140.1 6.6 98 6-117 2-99 (99)
6 cd01523 RHOD_Lact_B Member of 99.9 9.8E-25 2.1E-29 137.1 8.4 94 8-111 1-99 (100)
7 cd01531 Acr2p Eukaryotic arsen 99.9 4.8E-24 1E-28 136.8 10.6 106 5-113 1-112 (113)
8 cd01534 4RHOD_Repeat_3 Member 99.9 1.8E-24 4E-29 134.7 7.3 92 8-111 1-94 (95)
9 cd01443 Cdc25_Acr2p Cdc25 enzy 99.9 1.5E-23 3.2E-28 134.6 10.8 101 6-111 2-112 (113)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 1.1E-23 2.4E-28 143.0 10.1 106 4-117 34-162 (162)
11 cd01526 RHOD_ThiF Member of th 99.9 5.8E-24 1.3E-28 138.2 8.0 104 4-116 6-117 (122)
12 cd01528 RHOD_2 Member of the R 99.9 6.6E-24 1.4E-28 133.6 7.5 96 7-112 1-98 (101)
13 cd01521 RHOD_PspE2 Member of t 99.9 1.2E-23 2.7E-28 134.3 8.3 100 6-117 8-110 (110)
14 cd01530 Cdc25 Cdc25 phosphatas 99.9 1.9E-23 4.1E-28 135.7 8.2 105 6-111 2-120 (121)
15 cd01444 GlpE_ST GlpE sulfurtra 99.9 1.5E-23 3.2E-28 130.5 7.4 92 7-111 1-95 (96)
16 cd01520 RHOD_YbbB Member of th 99.9 3.7E-23 8E-28 135.5 9.4 95 8-112 1-126 (128)
17 PF00581 Rhodanese: Rhodanese- 99.9 9E-24 2E-28 134.6 6.3 100 9-113 1-113 (113)
18 cd01524 RHOD_Pyr_redox Member 99.9 2E-23 4.4E-28 128.8 7.1 89 8-111 1-89 (90)
19 KOG1530 Rhodanese-related sulf 99.9 3.3E-23 7.1E-28 132.5 7.9 106 4-118 21-135 (136)
20 cd01447 Polysulfide_ST Polysul 99.9 2E-23 4.4E-28 131.4 6.9 98 8-114 1-103 (103)
21 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.5E-22 3.4E-27 131.3 10.0 99 8-114 2-122 (122)
22 cd01519 RHOD_HSP67B2 Member of 99.9 5.1E-23 1.1E-27 130.3 7.4 94 9-111 2-105 (106)
23 cd01535 4RHOD_Repeat_4 Member 99.9 6.6E-23 1.4E-27 136.9 8.0 98 13-123 2-100 (145)
24 cd01525 RHOD_Kc Member of the 99.9 5.7E-23 1.2E-27 130.0 6.5 93 8-111 1-104 (105)
25 cd01522 RHOD_1 Member of the R 99.9 1.5E-22 3.3E-27 130.7 7.6 97 8-113 1-105 (117)
26 PRK11493 sseA 3-mercaptopyruva 99.9 5.2E-22 1.1E-26 145.6 10.6 112 6-125 5-141 (281)
27 cd01449 TST_Repeat_2 Thiosulfa 99.9 3.9E-22 8.4E-27 128.6 7.3 95 8-111 1-117 (118)
28 cd01529 4RHOD_Repeats Member o 99.9 2.6E-22 5.6E-27 125.2 5.9 84 19-111 10-95 (96)
29 PRK09629 bifunctional thiosulf 99.9 1.3E-21 2.8E-26 155.8 10.9 111 6-124 9-134 (610)
30 PRK08762 molybdopterin biosynt 99.9 5.4E-22 1.2E-26 150.7 8.2 106 5-122 2-107 (376)
31 PRK01415 hypothetical protein; 99.9 1.1E-21 2.4E-26 140.4 7.7 101 5-114 111-213 (247)
32 smart00450 RHOD Rhodanese Homo 99.9 7.5E-22 1.6E-26 122.6 6.0 89 19-116 2-100 (100)
33 PLN02723 3-mercaptopyruvate su 99.9 3.7E-21 7.9E-26 143.4 9.7 108 6-121 22-153 (320)
34 cd01532 4RHOD_Repeat_1 Member 99.9 2E-21 4.4E-26 120.4 6.8 86 16-112 5-92 (92)
35 COG0607 PspE Rhodanese-related 99.8 6.1E-21 1.3E-25 121.2 7.9 99 11-120 10-109 (110)
36 PRK05320 rhodanese superfamily 99.8 5.1E-21 1.1E-25 138.4 8.4 101 4-113 108-216 (257)
37 PRK00142 putative rhodanese-re 99.8 5.6E-21 1.2E-25 141.7 8.8 101 4-113 110-212 (314)
38 cd00158 RHOD Rhodanese Homolog 99.8 5.4E-21 1.2E-25 116.8 6.8 88 13-111 2-89 (89)
39 TIGR02981 phageshock_pspE phag 99.8 2.1E-20 4.6E-25 117.6 6.0 80 21-112 18-97 (101)
40 cd01445 TST_Repeats Thiosulfat 99.8 8.2E-20 1.8E-24 121.0 9.0 96 8-111 1-137 (138)
41 PRK11493 sseA 3-mercaptopyruva 99.8 5.7E-20 1.2E-24 134.8 8.2 104 8-120 155-280 (281)
42 PRK07878 molybdopterin biosynt 99.8 7E-20 1.5E-24 139.8 8.0 102 4-116 285-387 (392)
43 PLN02723 3-mercaptopyruvate su 99.8 1.8E-19 3.8E-24 134.4 9.0 104 8-120 192-318 (320)
44 PRK10287 thiosulfate:cyanide s 99.8 4.8E-20 1E-24 116.5 5.1 80 21-112 20-99 (104)
45 cd01446 DSP_MapKP N-terminal r 99.8 5.6E-19 1.2E-23 116.1 8.1 103 7-113 1-127 (132)
46 PRK07411 hypothetical protein; 99.8 3.3E-19 7.2E-24 135.9 7.4 102 4-116 280-385 (390)
47 PRK09629 bifunctional thiosulf 99.8 1.8E-18 3.9E-23 137.9 10.6 106 7-121 148-273 (610)
48 TIGR03167 tRNA_sel_U_synt tRNA 99.8 6.2E-19 1.3E-23 130.5 7.4 91 21-120 2-122 (311)
49 COG2897 SseA Rhodanese-related 99.8 3.9E-18 8.5E-23 124.3 10.8 117 4-128 9-147 (285)
50 PRK11784 tRNA 2-selenouridine 99.8 1.3E-18 2.9E-23 130.3 7.9 102 8-119 3-135 (345)
51 PRK05597 molybdopterin biosynt 99.7 4.5E-18 9.8E-23 128.3 6.0 94 6-112 261-354 (355)
52 COG2897 SseA Rhodanese-related 99.7 1.2E-17 2.7E-22 121.7 7.9 106 7-121 157-284 (285)
53 PRK05600 thiamine biosynthesis 99.7 1.4E-17 3.1E-22 126.1 6.0 92 7-109 272-370 (370)
54 KOG3772 M-phase inducer phosph 99.6 7.1E-15 1.5E-19 107.7 8.1 115 4-118 154-281 (325)
55 COG1054 Predicted sulfurtransf 99.6 7.4E-15 1.6E-19 106.3 7.7 99 6-113 113-213 (308)
56 KOG1529 Mercaptopyruvate sulfu 99.5 5.7E-13 1.2E-17 96.1 10.2 112 6-125 5-143 (286)
57 PRK01269 tRNA s(4)U8 sulfurtra 99.5 6.9E-14 1.5E-18 109.4 5.9 79 12-104 399-481 (482)
58 KOG2017 Molybdopterin synthase 99.4 1.2E-12 2.6E-17 96.6 5.6 101 5-113 316-419 (427)
59 COG5105 MIH1 Mitotic inducer, 99.1 1E-09 2.2E-14 80.5 8.8 114 4-120 240-365 (427)
60 KOG1529 Mercaptopyruvate sulfu 99.0 1.4E-09 3E-14 78.7 6.3 85 19-113 170-276 (286)
61 COG2603 Predicted ATPase [Gene 98.0 7.8E-06 1.7E-10 59.8 3.4 91 11-110 6-126 (334)
62 KOG1717 Dual specificity phosp 97.8 3E-05 6.6E-10 56.1 4.0 103 7-114 5-125 (343)
63 TIGR01244 conserved hypothetic 97.0 0.0057 1.2E-07 40.2 7.3 73 6-79 13-101 (135)
64 PRK00142 putative rhodanese-re 96.9 0.00025 5.4E-09 53.1 0.0 61 8-70 16-76 (314)
65 PF04273 DUF442: Putative phos 96.9 0.0012 2.7E-08 41.9 3.1 67 6-74 13-97 (110)
66 KOG3636 Uncharacterized conser 96.7 0.0095 2E-07 46.5 7.3 99 8-111 309-427 (669)
67 TIGR03167 tRNA_sel_U_synt tRNA 96.3 0.013 2.8E-07 44.0 5.9 68 6-74 136-207 (311)
68 KOG1093 Predicted protein kina 96.2 0.00044 9.6E-09 55.0 -2.3 94 4-109 620-717 (725)
69 PLN02727 NAD kinase 95.4 0.15 3.2E-06 43.4 8.8 79 6-85 267-364 (986)
70 COG3453 Uncharacterized protei 93.6 0.22 4.7E-06 32.2 4.6 70 6-77 14-100 (130)
71 PF13350 Y_phosphatase3: Tyros 92.6 0.26 5.6E-06 33.2 4.3 32 4-35 26-57 (164)
72 cd00127 DSPc Dual specificity 92.4 0.69 1.5E-05 29.8 6.1 61 20-80 27-98 (139)
73 smart00195 DSPc Dual specifici 91.8 1.6 3.4E-05 28.2 7.2 59 20-79 26-94 (138)
74 PF00782 DSPc: Dual specificit 87.4 2.8 6.1E-05 26.8 5.7 21 60-80 70-90 (133)
75 COG4822 CbiK Cobalamin biosynt 84.8 5.9 0.00013 28.5 6.5 47 53-103 124-173 (265)
76 PRK11784 tRNA 2-selenouridine 83.3 3.6 7.7E-05 31.5 5.4 64 8-72 152-218 (345)
77 COG2453 CDC14 Predicted protei 82.8 3.1 6.6E-05 28.6 4.5 22 58-79 100-121 (180)
78 cd05567 PTS_IIB_mannitol PTS_I 81.9 6.5 0.00014 23.5 5.2 41 65-110 2-42 (87)
79 PF01451 LMWPc: Low molecular 81.5 2.9 6.2E-05 27.1 3.8 41 66-110 1-41 (138)
80 PRK12361 hypothetical protein; 80.5 8.7 0.00019 31.1 6.9 21 60-80 172-192 (547)
81 PF02302 PTS_IIB: PTS system, 80.3 3.1 6.8E-05 24.7 3.4 36 65-105 1-36 (90)
82 COG5350 Predicted protein tyro 79.6 4.8 0.0001 27.3 4.3 32 52-83 82-113 (172)
83 PRK10310 PTS system galactitol 79.5 7.7 0.00017 23.7 5.0 42 65-111 4-45 (94)
84 PF07755 DUF1611: Protein of u 79.5 8.2 0.00018 29.0 6.0 87 10-119 76-165 (301)
85 TIGR00853 pts-lac PTS system, 79.5 7.7 0.00017 23.8 5.0 42 63-110 3-44 (95)
86 COG2213 MtlA Phosphotransferas 79.3 3.9 8.5E-05 31.9 4.3 43 64-110 379-421 (472)
87 cd05565 PTS_IIB_lactose PTS_II 76.5 12 0.00025 23.3 5.2 41 65-111 2-42 (99)
88 PRK07688 thiamine/molybdopteri 75.5 2.5 5.5E-05 32.1 2.4 35 5-40 276-316 (339)
89 COG0162 TyrS Tyrosyl-tRNA synt 74.6 7.5 0.00016 30.4 4.8 48 65-113 32-80 (401)
90 PF14606 Lipase_GDSL_3: GDSL-l 73.4 28 0.0006 24.1 8.9 73 20-105 60-144 (178)
91 PF02590 SPOUT_MTase: Predicte 73.2 9.5 0.00021 25.7 4.5 53 54-111 58-111 (155)
92 COG3414 SgaB Phosphotransferas 73.0 8 0.00017 23.8 3.8 31 64-98 2-32 (93)
93 PF09992 DUF2233: Predicted pe 72.9 4.1 8.9E-05 27.4 2.8 44 62-109 99-142 (170)
94 PTZ00393 protein tyrosine phos 72.7 11 0.00024 27.4 4.9 20 60-79 167-186 (241)
95 cd02071 MM_CoA_mut_B12_BD meth 72.5 17 0.00037 23.1 5.4 48 63-115 50-103 (122)
96 PF05706 CDKN3: Cyclin-depende 72.1 10 0.00023 26.0 4.5 28 52-79 122-149 (168)
97 TIGR00824 EIIA-man PTS system, 72.0 15 0.00033 23.3 5.1 26 47-72 42-67 (116)
98 PRK09590 celB cellobiose phosp 71.8 14 0.00029 23.2 4.7 40 65-110 3-42 (104)
99 PF03162 Y_phosphatase2: Tyros 71.4 9 0.0002 26.0 4.1 20 61-80 89-108 (164)
100 PF03610 EIIA-man: PTS system 70.9 18 0.00039 22.7 5.3 27 48-74 42-68 (116)
101 PF03853 YjeF_N: YjeF-related 70.0 14 0.00031 25.0 4.9 35 61-102 23-57 (169)
102 smart00012 PTPc_DSPc Protein t 68.9 9.1 0.0002 22.8 3.5 18 62-79 38-55 (105)
103 smart00404 PTPc_motif Protein 68.9 9.1 0.0002 22.8 3.5 18 62-79 38-55 (105)
104 COG0062 Uncharacterized conser 67.2 31 0.00066 24.4 6.1 37 60-103 44-82 (203)
105 cd05564 PTS_IIB_chitobiose_lic 66.4 19 0.00042 21.9 4.5 40 65-110 1-40 (96)
106 TIGR00197 yjeF_nterm yjeF N-te 66.1 34 0.00074 24.0 6.3 37 60-103 42-78 (205)
107 KOG4166 Thiamine pyrophosphate 65.4 18 0.0004 28.8 5.1 68 19-86 240-321 (675)
108 PRK10565 putative carbohydrate 64.9 27 0.0006 28.2 6.2 37 60-103 57-93 (508)
109 cd05563 PTS_IIB_ascorbate PTS_ 64.7 15 0.00033 21.6 3.8 29 66-98 2-30 (86)
110 cd00133 PTS_IIB PTS_IIB: subun 64.5 16 0.00035 20.7 3.8 29 66-98 2-30 (84)
111 PLN03050 pyridoxine (pyridoxam 63.8 22 0.00047 25.9 5.0 33 64-103 61-93 (246)
112 COG2518 Pcm Protein-L-isoaspar 63.7 24 0.00051 25.1 5.0 28 86-113 108-136 (209)
113 COG4566 TtrR Response regulato 63.4 31 0.00067 24.3 5.4 52 7-74 34-87 (202)
114 cd05566 PTS_IIB_galactitol PTS 62.4 17 0.00036 21.5 3.7 30 65-98 2-31 (89)
115 smart00226 LMWPc Low molecular 60.7 14 0.0003 23.9 3.3 37 66-110 1-37 (140)
116 PLN02645 phosphoglycolate phos 60.7 68 0.0015 23.9 8.2 62 2-74 10-71 (311)
117 PLN03049 pyridoxine (pyridoxam 60.3 37 0.00081 27.1 6.2 33 64-103 60-92 (462)
118 COG1660 Predicted P-loop-conta 59.2 29 0.00064 25.7 5.0 35 64-102 244-278 (286)
119 COG1611 Predicted Rossmann fol 58.8 28 0.00061 24.6 4.8 45 62-109 13-57 (205)
120 PF03668 ATP_bind_2: P-loop AT 57.7 39 0.00084 25.3 5.5 31 64-98 243-273 (284)
121 PF14566 PTPlike_phytase: Inos 57.1 12 0.00025 24.9 2.5 26 55-80 116-141 (149)
122 PRK00103 rRNA large subunit me 56.7 59 0.0013 22.0 6.6 56 53-112 57-112 (157)
123 PLN02918 pyridoxine (pyridoxam 55.8 48 0.001 27.2 6.1 33 64-103 136-168 (544)
124 COG1891 Uncharacterized protei 54.6 27 0.00059 24.4 3.9 28 4-32 4-31 (235)
125 PF04343 DUF488: Protein of un 54.3 13 0.00029 23.6 2.4 23 9-31 1-24 (122)
126 TIGR00640 acid_CoA_mut_C methy 54.2 45 0.00098 21.7 4.9 49 62-115 52-106 (132)
127 PTZ00242 protein tyrosine phos 54.0 30 0.00065 23.4 4.2 19 61-79 96-114 (166)
128 TIGR01043 ATP_syn_A_arch ATP s 53.1 42 0.00091 27.7 5.4 27 83-114 309-335 (578)
129 PRK13354 tyrosyl-tRNA syntheta 53.0 45 0.00097 26.2 5.4 50 61-111 29-79 (410)
130 cd00115 LMWPc Substituted upda 52.7 32 0.00069 22.3 4.0 39 65-110 2-40 (141)
131 cd05569 PTS_IIB_fructose PTS_I 51.1 36 0.00077 20.8 3.8 33 66-103 3-35 (96)
132 PF07879 PHB_acc_N: PHB/PHA ac 49.5 24 0.00052 20.1 2.6 28 5-32 17-45 (64)
133 PF11775 CobT_C: Cobalamin bio 49.4 97 0.0021 22.3 6.2 53 67-119 17-79 (219)
134 PF06999 Suc_Fer-like: Sucrase 47.8 41 0.00088 23.8 4.2 34 63-97 131-167 (230)
135 PRK11391 etp phosphotyrosine-p 47.4 36 0.00078 22.4 3.7 38 64-110 3-40 (144)
136 KOG1352 Vacuolar H+-ATPase V1 46.6 39 0.00084 26.8 4.1 55 37-107 249-303 (618)
137 PRK08117 4-aminobutyrate amino 44.9 56 0.0012 25.5 5.0 44 62-112 101-144 (433)
138 TIGR00234 tyrS tyrosyl-tRNA sy 44.0 67 0.0015 24.9 5.1 48 65-113 30-78 (377)
139 TIGR02689 ars_reduc_gluta arse 43.5 40 0.00086 21.5 3.3 16 65-80 2-17 (126)
140 PRK02261 methylaspartate mutas 43.2 93 0.002 20.3 5.1 35 63-103 3-37 (137)
141 PRK05922 type III secretion sy 42.2 83 0.0018 25.1 5.4 52 61-117 210-266 (434)
142 COG0529 CysC Adenylylsulfate k 42.0 65 0.0014 22.6 4.3 21 85-106 40-60 (197)
143 PRK09548 PTS system ascorbate- 41.9 40 0.00086 28.0 3.7 33 62-98 505-537 (602)
144 COG1576 Uncharacterized conser 41.4 1.1E+02 0.0024 20.7 6.8 54 52-110 56-109 (155)
145 KOG0333 U5 snRNP-like RNA heli 39.8 1.1E+02 0.0024 25.4 5.7 37 62-108 516-552 (673)
146 TIGR00646 MG010 DNA primase-re 39.6 49 0.0011 23.7 3.5 43 66-112 156-199 (218)
147 PRK10126 tyrosine phosphatase; 39.3 49 0.0011 21.7 3.4 38 64-110 3-40 (147)
148 COG0394 Wzb Protein-tyrosine-p 38.6 1E+02 0.0022 20.2 4.7 38 64-109 3-40 (139)
149 PRK05912 tyrosyl-tRNA syntheta 38.5 82 0.0018 24.7 4.9 48 63-111 31-79 (408)
150 PRK06148 hypothetical protein; 38.4 88 0.0019 27.7 5.5 45 61-112 677-721 (1013)
151 cd00006 PTS_IIA_man PTS_IIA, P 38.4 1E+02 0.0022 19.4 5.4 25 48-72 42-66 (122)
152 PRK13530 arsenate reductase; P 38.1 74 0.0016 20.6 4.0 37 64-108 4-40 (133)
153 PRK10499 PTS system N,N'-diace 37.8 96 0.0021 19.3 4.3 30 64-98 4-33 (106)
154 COG3581 Uncharacterized protei 37.5 83 0.0018 24.8 4.6 38 64-104 72-109 (420)
155 PRK10113 cell division modulat 37.4 28 0.00061 20.0 1.6 47 61-117 7-53 (80)
156 PF13344 Hydrolase_6: Haloacid 37.1 99 0.0021 18.9 6.1 20 52-74 22-41 (101)
157 PRK15088 PTS system mannose-sp 36.9 1E+02 0.0023 23.4 5.1 25 48-72 44-68 (322)
158 PRK05571 ribose-5-phosphate is 36.5 1E+02 0.0023 20.6 4.6 55 11-74 16-70 (148)
159 cd02067 B12-binding B12 bindin 35.6 96 0.0021 19.2 4.2 32 66-103 2-33 (119)
160 cd04468 S1_eIF5A S1_eIF5A: Euk 35.6 91 0.002 18.0 4.9 45 19-68 3-52 (69)
161 PRK05639 4-aminobutyrate amino 35.4 98 0.0021 24.6 5.0 41 65-112 114-154 (457)
162 COG1157 FliI Flagellar biosynt 35.3 1.2E+02 0.0027 24.1 5.3 46 63-113 218-268 (441)
163 PF11288 DUF3089: Protein of u 35.2 59 0.0013 23.1 3.3 33 42-74 73-105 (207)
164 PRK06917 hypothetical protein; 34.9 1.4E+02 0.0031 23.6 5.8 48 61-112 88-138 (447)
165 COG1204 Superfamily II helicas 34.7 2.6E+02 0.0056 24.2 7.5 75 9-85 192-274 (766)
166 PRK15083 PTS system mannitol-s 34.7 89 0.0019 26.1 4.8 37 63-103 378-414 (639)
167 TIGR01587 cas3_core CRISPR-ass 34.3 2E+02 0.0043 21.6 6.4 47 53-108 212-259 (358)
168 cd05568 PTS_IIB_bgl_like PTS_I 34.3 35 0.00076 19.6 1.9 22 65-90 2-23 (85)
169 PRK00615 glutamate-1-semialdeh 34.3 1.1E+02 0.0023 24.2 5.0 40 65-111 111-150 (433)
170 TIGR00644 recJ single-stranded 34.2 2.5E+02 0.0054 22.9 7.2 49 48-102 39-87 (539)
171 PF06180 CbiK: Cobalt chelatas 34.2 71 0.0015 23.5 3.7 37 62-102 140-176 (262)
172 PRK05416 glmZ(sRNA)-inactivati 34.0 1.5E+02 0.0032 22.2 5.4 33 64-102 246-278 (288)
173 PRK08149 ATP synthase SpaL; Va 33.7 2.5E+02 0.0053 22.4 7.0 34 80-118 228-261 (428)
174 PF01583 APS_kinase: Adenylyls 33.6 1.4E+02 0.003 20.2 4.8 37 65-106 3-39 (156)
175 PF04763 DUF562: Protein of un 33.2 76 0.0016 21.1 3.3 34 62-99 14-51 (146)
176 TIGR02370 pyl_corrinoid methyl 32.7 1.4E+02 0.003 20.7 4.9 35 63-103 84-118 (197)
177 COG0647 NagD Predicted sugar p 32.6 1.6E+02 0.0036 21.7 5.4 87 20-120 8-116 (269)
178 PRK06149 hypothetical protein; 32.5 1.3E+02 0.0028 26.5 5.6 44 61-111 638-681 (972)
179 KOG1719 Dual specificity phosp 32.5 73 0.0016 21.8 3.3 20 61-80 107-126 (183)
180 PRK08593 4-aminobutyrate amino 32.2 1.1E+02 0.0024 24.1 4.8 41 65-112 104-144 (445)
181 PLN02482 glutamate-1-semialdeh 32.2 1.4E+02 0.003 24.0 5.4 40 65-111 156-195 (474)
182 KOG1615 Phosphoserine phosphat 31.8 78 0.0017 22.6 3.4 25 81-110 93-117 (227)
183 TIGR00246 tRNA_RlmH_YbeA rRNA 31.6 1.6E+02 0.0035 19.7 6.1 54 53-112 56-109 (153)
184 PRK04192 V-type ATP synthase s 31.4 58 0.0013 27.0 3.1 47 65-116 290-342 (586)
185 PRK12613 galactose-6-phosphate 31.2 1.6E+02 0.0035 19.6 4.7 51 11-74 16-66 (141)
186 PRK05964 adenosylmethionine--8 31.2 2E+02 0.0042 22.4 6.0 47 65-112 103-149 (423)
187 PRK05298 excinuclease ABC subu 30.9 2.2E+02 0.0047 23.9 6.5 46 53-108 436-481 (652)
188 COG1440 CelA Phosphotransferas 30.8 1.3E+02 0.0028 18.9 4.0 29 64-97 2-30 (102)
189 PRK06918 4-aminobutyrate amino 30.8 1.3E+02 0.0029 23.7 5.0 40 66-112 117-156 (451)
190 cd02069 methionine_synthase_B1 30.5 1.6E+02 0.0035 20.8 5.0 35 63-103 88-122 (213)
191 PRK05688 fliI flagellum-specif 30.5 1.2E+02 0.0026 24.3 4.7 30 80-114 245-274 (451)
192 cd03062 TRX_Fd_Sucrase TRX-lik 30.4 1.2E+02 0.0026 18.4 3.9 36 65-101 2-40 (97)
193 COG1077 MreB Actin-like ATPase 30.3 2.6E+02 0.0056 21.6 6.9 65 52-121 84-153 (342)
194 TIGR01848 PHA_reg_PhaR polyhyd 30.1 67 0.0014 20.3 2.6 29 5-33 17-46 (107)
195 COG2185 Sbm Methylmalonyl-CoA 30.1 1.7E+02 0.0037 19.5 6.4 42 61-107 61-102 (143)
196 cd03364 TOPRIM_DnaG_primases T 29.9 1.1E+02 0.0025 17.4 6.7 34 64-103 44-77 (79)
197 PRK11070 ssDNA exonuclease Rec 29.8 2.7E+02 0.0057 23.2 6.7 49 48-101 54-102 (575)
198 KOG2882 p-Nitrophenyl phosphat 29.8 2.5E+02 0.0054 21.3 6.9 32 11-42 13-44 (306)
199 KOG1610 Corticosteroid 11-beta 29.8 81 0.0018 24.0 3.5 31 76-107 180-210 (322)
200 PRK07046 aminotransferase; Val 29.7 56 0.0012 25.9 2.8 40 65-111 131-170 (453)
201 cd02070 corrinoid_protein_B12- 29.6 1.7E+02 0.0037 20.3 5.0 35 63-103 82-116 (201)
202 PRK08360 4-aminobutyrate amino 29.1 1.3E+02 0.0028 23.8 4.7 40 65-111 102-141 (443)
203 COG0514 RecQ Superfamily II DN 29.1 96 0.0021 25.8 4.0 37 62-108 229-265 (590)
204 TIGR03372 putres_am_tran putre 28.8 1.7E+02 0.0037 23.2 5.3 48 61-112 131-178 (442)
205 PRK12285 tryptophanyl-tRNA syn 28.6 2.8E+02 0.0061 21.5 6.4 53 59-112 60-112 (368)
206 PRK06062 hypothetical protein; 28.5 1.4E+02 0.003 23.7 4.8 44 61-111 109-152 (451)
207 PF03572 Peptidase_S41: Peptid 28.5 53 0.0012 21.5 2.2 26 62-90 89-114 (169)
208 PF10686 DUF2493: Protein of u 28.4 1.2E+02 0.0027 17.4 4.0 8 100-107 34-41 (71)
209 PF06794 UPF0270: Uncharacteri 28.2 67 0.0015 18.7 2.2 55 5-73 5-59 (70)
210 TIGR00631 uvrb excinuclease AB 28.1 2.6E+02 0.0056 23.6 6.4 47 52-108 431-477 (655)
211 KOG1403 Predicted alanine-glyo 27.9 2.3E+02 0.0049 21.9 5.5 42 60-109 99-140 (452)
212 cd00047 PTPc Protein tyrosine 27.8 56 0.0012 22.9 2.3 18 62-79 165-182 (231)
213 PRK05965 hypothetical protein; 27.7 2.5E+02 0.0054 22.3 6.1 47 61-111 104-153 (459)
214 COG4547 CobT Cobalamin biosynt 27.5 1.6E+02 0.0035 23.9 4.8 52 67-122 418-483 (620)
215 TIGR02691 arsC_pI258_fam arsen 27.5 75 0.0016 20.4 2.7 14 67-80 2-15 (129)
216 TIGR01118 lacA galactose-6-pho 27.4 1.9E+02 0.0042 19.2 4.8 52 11-74 16-67 (141)
217 COG0279 GmhA Phosphoheptose is 27.4 2.1E+02 0.0046 19.8 6.1 40 60-101 38-78 (176)
218 PRK05769 4-aminobutyrate amino 27.4 75 0.0016 25.1 3.1 41 65-112 116-156 (441)
219 PRK08622 galactose-6-phosphate 27.3 1.7E+02 0.0038 20.1 4.5 54 11-74 16-69 (171)
220 TIGR00700 GABAtrnsam 4-aminobu 27.2 93 0.002 24.2 3.6 40 65-111 95-134 (420)
221 PF02502 LacAB_rpiB: Ribose/Ga 27.1 1.6E+02 0.0034 19.5 4.1 54 11-74 15-68 (140)
222 COG1282 PntB NAD/NADP transhyd 26.7 1.6E+02 0.0035 23.2 4.6 68 4-72 292-393 (463)
223 COG0488 Uup ATPase components 26.6 1.2E+02 0.0026 24.8 4.2 75 15-113 167-241 (530)
224 COG0123 AcuC Deacetylases, inc 26.4 3E+02 0.0065 21.1 6.9 15 96-110 282-296 (340)
225 cd07563 Peptidase_S41_IRBP Int 26.3 72 0.0016 22.8 2.7 18 13-30 88-105 (250)
226 PTZ00215 ribose 5-phosphate is 26.3 2.1E+02 0.0045 19.3 4.8 54 11-74 18-73 (151)
227 PRK11522 putrescine--2-oxoglut 26.3 1.8E+02 0.0039 23.2 5.1 48 61-112 138-185 (459)
228 KOG2585 Uncharacterized conser 25.9 1.4E+02 0.0031 23.9 4.3 33 65-103 268-300 (453)
229 KOG2283 Clathrin coat dissocia 25.7 3.2E+02 0.0069 21.9 6.2 67 10-77 40-121 (434)
230 smart00194 PTPc Protein tyrosi 25.7 1E+02 0.0022 22.1 3.4 17 63-79 193-209 (258)
231 cd01134 V_A-ATPase_A V/A-type 25.4 1.5E+02 0.0033 23.1 4.3 45 65-114 220-270 (369)
232 PF04722 Ssu72: Ssu72-like pro 25.4 1.4E+02 0.003 21.1 3.8 30 65-103 3-32 (195)
233 cd05013 SIS_RpiR RpiR-like pro 25.3 1.7E+02 0.0038 18.0 5.8 42 56-105 6-47 (139)
234 TIGR00689 rpiB_lacA_lacB sugar 25.2 2.1E+02 0.0046 19.0 5.0 54 11-74 14-67 (144)
235 COG4992 ArgD Ornithine/acetylo 25.2 2.9E+02 0.0062 21.9 5.8 39 63-108 99-140 (404)
236 PRK09273 hypothetical protein; 25.1 1.5E+02 0.0032 21.2 3.9 57 10-74 19-75 (211)
237 PRK06777 4-aminobutyrate amino 25.1 2.4E+02 0.0051 22.1 5.5 39 66-111 103-141 (421)
238 TIGR01119 lacB galactose-6-pho 25.0 2.2E+02 0.0047 19.7 4.6 54 11-74 16-69 (171)
239 PRK09004 FMN-binding protein M 25.0 1.9E+02 0.0041 19.0 4.3 33 66-104 5-37 (146)
240 PRK09426 methylmalonyl-CoA mut 24.9 1.4E+02 0.003 25.5 4.3 42 61-107 631-672 (714)
241 KOG3456 NADH:ubiquinone oxidor 24.7 93 0.002 19.7 2.5 20 65-102 78-97 (120)
242 PRK06082 4-aminobutyrate amino 24.6 2.1E+02 0.0046 22.7 5.2 41 65-112 131-171 (459)
243 PRK12898 secA preprotein trans 24.5 4.4E+02 0.0095 22.4 9.4 85 11-108 423-508 (656)
244 PRK10566 esterase; Provisional 24.1 2E+02 0.0043 20.0 4.6 33 64-102 27-59 (249)
245 TIGR01120 rpiB ribose 5-phosph 24.1 2.3E+02 0.0049 18.9 4.5 53 12-74 16-68 (143)
246 COG1155 NtpA Archaeal/vacuolar 24.0 1.3E+02 0.0028 24.8 3.8 25 88-113 312-336 (588)
247 PRK12615 galactose-6-phosphate 24.0 2.3E+02 0.005 19.5 4.6 54 11-74 16-69 (171)
248 PRK06916 adenosylmethionine--8 24.0 2.8E+02 0.0061 22.0 5.8 51 61-112 113-163 (460)
249 PF04748 Polysacc_deac_2: Dive 23.8 1.4E+02 0.0031 21.1 3.7 64 11-74 109-185 (213)
250 PRK07030 adenosylmethionine--8 23.8 2.9E+02 0.0063 22.0 5.8 48 63-111 106-153 (466)
251 PRK07495 4-aminobutyrate amino 23.8 2.3E+02 0.0049 22.3 5.2 40 65-111 102-141 (425)
252 PF12146 Hydrolase_4: Putative 23.7 1.6E+02 0.0035 17.1 4.5 35 64-104 16-50 (79)
253 KOG1089 Myotubularin-related p 23.7 2.6E+02 0.0056 23.3 5.4 49 62-119 343-396 (573)
254 COG1798 DPH5 Diphthamide biosy 23.7 3.1E+02 0.0067 20.3 6.1 87 8-107 145-240 (260)
255 PRK14994 SAM-dependent 16S rib 23.5 3.2E+02 0.0069 20.4 5.8 63 51-118 72-137 (287)
256 PRK13104 secA preprotein trans 23.5 3.1E+02 0.0068 24.2 6.2 41 60-110 441-481 (896)
257 cd04469 S1_Hex1 S1_Hex1: Hex1, 23.3 1.7E+02 0.0037 17.2 5.0 35 21-57 4-44 (75)
258 PRK07036 hypothetical protein; 23.3 3E+02 0.0065 21.9 5.8 47 61-111 109-158 (466)
259 PRK12389 glutamate-1-semialdeh 23.2 2E+02 0.0043 22.6 4.8 41 65-112 110-150 (428)
260 KOG1401 Acetylornithine aminot 23.1 1.3E+02 0.0029 23.8 3.6 43 64-109 116-160 (433)
261 PTZ00110 helicase; Provisional 23.1 4.2E+02 0.0091 21.6 9.7 46 53-108 366-412 (545)
262 PTZ00346 histone deacetylase; 23.1 4E+02 0.0086 21.3 6.9 16 93-108 304-319 (429)
263 PF12695 Abhydrolase_5: Alpha/ 23.0 2E+02 0.0043 17.8 4.6 7 96-102 59-65 (145)
264 PRK06105 aminotransferase; Pro 22.9 3.2E+02 0.0069 21.7 5.9 52 61-113 106-157 (460)
265 COG2984 ABC-type uncharacteriz 22.9 3.5E+02 0.0077 20.7 6.2 36 59-98 155-190 (322)
266 PRK06058 4-aminobutyrate amino 22.9 1.1E+02 0.0024 24.0 3.3 40 65-111 118-157 (443)
267 KOG2484 GTPase [General functi 22.8 2.2E+02 0.0047 22.7 4.7 64 11-77 138-220 (435)
268 PRK07482 hypothetical protein; 22.7 2.8E+02 0.0061 22.0 5.6 47 61-111 108-157 (461)
269 TIGR00614 recQ_fam ATP-depende 22.5 3.6E+02 0.0078 21.4 6.1 37 62-108 225-261 (470)
270 PRK09792 4-aminobutyrate trans 22.5 1.2E+02 0.0025 23.8 3.3 39 66-111 103-141 (421)
271 KOG0339 ATP-dependent RNA heli 22.2 2.7E+02 0.0058 23.2 5.2 48 61-113 293-340 (731)
272 TIGR00709 dat 2,4-diaminobutyr 22.1 2.2E+02 0.0048 22.4 4.9 40 65-111 103-142 (442)
273 PF12682 Flavodoxin_4: Flavodo 21.9 1.6E+02 0.0035 19.6 3.6 29 53-81 92-121 (156)
274 PRK11192 ATP-dependent RNA hel 21.9 2.5E+02 0.0054 21.8 5.1 37 62-108 244-280 (434)
275 PRK08105 flavodoxin; Provision 21.9 2.4E+02 0.0051 18.6 4.3 34 65-104 4-37 (149)
276 COG0616 SppA Periplasmic serin 21.8 3.6E+02 0.0078 20.4 7.3 61 43-108 79-139 (317)
277 PRK07960 fliI flagellum-specif 21.6 2.3E+02 0.005 22.8 4.8 30 82-116 254-283 (455)
278 PRK07414 cob(I)yrinic acid a,c 21.6 2.7E+02 0.0058 19.3 4.6 20 61-80 19-38 (178)
279 PLN02385 hydrolase; alpha/beta 21.5 2.8E+02 0.0062 20.7 5.2 36 64-104 87-122 (349)
280 TIGR00730 conserved hypothetic 21.5 2.2E+02 0.0047 19.6 4.2 8 65-72 2-9 (178)
281 PRK05569 flavodoxin; Provision 21.5 2.3E+02 0.005 18.0 4.9 32 62-98 82-113 (141)
282 COG1737 RpiR Transcriptional r 21.4 3.4E+02 0.0073 19.9 6.6 50 53-110 120-169 (281)
283 PRK06931 diaminobutyrate--2-ox 21.4 1.7E+02 0.0038 23.2 4.2 41 65-112 122-162 (459)
284 KOG0332 ATP-dependent RNA heli 21.3 1.5E+02 0.0034 23.4 3.6 34 66-109 333-366 (477)
285 PHA02742 protein tyrosine phos 21.3 65 0.0014 24.1 1.7 16 63-78 229-244 (303)
286 PRK13604 luxD acyl transferase 21.3 3.3E+02 0.0072 20.6 5.4 35 64-104 37-71 (307)
287 TIGR02407 ectoine_ectB diamino 21.2 1.4E+02 0.0031 23.2 3.6 40 65-111 100-139 (412)
288 COG0848 ExbD Biopolymer transp 21.1 2.5E+02 0.0055 18.4 5.8 54 44-104 79-132 (137)
289 TIGR03029 EpsG chain length de 21.1 3.3E+02 0.0071 19.6 7.4 59 42-106 76-141 (274)
290 PRK13360 omega amino acid--pyr 21.0 3.7E+02 0.0079 21.3 5.9 50 61-111 103-152 (442)
291 PRK06936 type III secretion sy 21.0 1.5E+02 0.0031 23.8 3.6 30 81-115 240-269 (439)
292 KOG1386 Nucleoside phosphatase 20.9 1.6E+02 0.0034 24.0 3.7 57 62-118 84-149 (501)
293 PRK04914 ATP-dependent helicas 20.5 3.3E+02 0.0071 24.3 5.8 38 63-109 493-530 (956)
294 PRK04537 ATP-dependent RNA hel 20.5 2.3E+02 0.005 23.3 4.8 37 62-108 256-292 (572)
295 KOG1716 Dual specificity phosp 20.5 3.6E+02 0.0078 19.9 5.9 19 61-79 153-171 (285)
296 KOG3302 TATA-box binding prote 20.4 1.6E+02 0.0035 20.8 3.3 19 76-98 89-107 (200)
297 PF00102 Y_phosphatase: Protei 20.3 67 0.0014 22.2 1.5 17 61-77 168-184 (235)
298 PRK07483 hypothetical protein; 20.2 2.8E+02 0.0061 21.9 5.1 51 61-112 87-137 (443)
299 TIGR01651 CobT cobaltochelatas 20.1 4E+02 0.0086 22.4 5.9 56 67-122 397-462 (600)
No 1
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.94 E-value=4.1e-26 Score=143.68 Aligned_cols=98 Identities=22% Similarity=0.431 Sum_probs=78.7
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHH--HhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--EVRGKDTLVFHCALSQVRGPTCAKR 83 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~--~~~~~~~iv~~c~~g~~~~~~~~~~ 83 (138)
..|+++++.++++.++.+|||||++.||..||||||+|+|+..+......+.. ..+++++||+||++|. ++..++
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~-rs~~a~-- 78 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGI-RCEKAS-- 78 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCch-hHHHHH--
Confidence 35899999999987789999999999999999999999999887543322211 1367899999999987 565554
Q ss_pred HHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 84 LANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.+|. ..||++|++|+||+.+|.+
T Consensus 79 --~~L~----~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 79 --AYLK----ERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred --HHHH----HhCCcceeeechhHHHHhC
Confidence 3443 3899999999999999963
No 2
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.93 E-value=4.6e-26 Score=145.10 Aligned_cols=104 Identities=18% Similarity=0.339 Sum_probs=88.1
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~ 83 (138)
.++.++++++.++++.++.+|||+|++.+|..||||||+|+|...+...+..+ +.++++++||.+|. ++..++
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~~----~~~~~ivv~c~~g~-~s~~a~-- 75 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQA----DFDTPVMVMCYHGN-SSQGAA-- 75 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHhc----CCCCCEEEEeCCCC-CHHHHH--
Confidence 56789999999998766789999999999999999999999988776655543 78899999999987 555554
Q ss_pred HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540 84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (138)
Q Consensus 84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (138)
..|+ ..||++|++|+||+.+|.+.++|+++.
T Consensus 76 --~~L~----~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 76 --QYLL----QQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred --HHHH----HCCchheEEecCCHHHHHhcCCCccCC
Confidence 3443 499999999999999999999998763
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.93 E-value=3.3e-26 Score=145.98 Aligned_cols=100 Identities=24% Similarity=0.394 Sum_probs=81.6
Q ss_pred CccccCHHHHHhhhCCC-CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540 4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK 82 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~-~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~ 82 (138)
.++.++++++.+++..+ +.+|||||++.||..||||||+|+|+.++...+..+. .+++++||+||++|. ++..++
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~-rs~~a~- 83 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRT-RSIIGA- 83 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCc-hHHHHH-
Confidence 56789999999998754 5789999999999999999999999988766555542 135689999999998 555554
Q ss_pred HHHHHHHHhhhhCCCcc-EEEeccchhhhhhCC
Q 032540 83 RLANYLDEVKEDTGINS-IFVLERGFKGWEASG 114 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~-v~~l~gG~~~w~~~g 114 (138)
..|. ..||++ |++|+||+.+|..+|
T Consensus 84 ---~~L~----~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 84 ---QSLI----NAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred ---HHHH----HCCCCcceeEecCCHHHHHhcC
Confidence 4443 499987 999999999998875
No 4
>PLN02160 thiosulfate sulfurtransferase
Probab=99.93 E-value=1.5e-25 Score=148.16 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=88.6
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccc--eecCCcc------hh--HHHHHHHHHhcCCCeEEEEeCCC
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGS--LHYPSDS------FT--DKIFDLIQEVRGKDTLVFHCALS 73 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgA--i~ip~~~------l~--~~~~~~~~~~~~~~~iv~~c~~g 73 (138)
.+..++++++.++++.+ .+|||||++.||..|||||| +|+|+.. +. ..+..+...++++++||+||++|
T Consensus 13 ~~~~i~~~e~~~~~~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG 91 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG 91 (136)
T ss_pred eeeEeCHHHHHHHHhCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCc
Confidence 57889999999998754 68999999999999999999 8999732 21 11222322246788999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540 74 QVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF 125 (138)
Q Consensus 74 ~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~ 125 (138)
. |+..++ ..|. ..||++|++|.||+.+|.++|+|+.+....|+
T Consensus 92 ~-RS~~Aa----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~ 134 (136)
T PLN02160 92 A-RSLKAT----TELV----AAGYKKVRNKGGGYLAWVDHSFPINQEEEEPS 134 (136)
T ss_pred H-HHHHHH----HHHH----HcCCCCeeecCCcHHHHhhCCCCccccccCCC
Confidence 8 666665 3443 48999999999999999999999999877664
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.92 E-value=1.9e-25 Score=140.10 Aligned_cols=98 Identities=24% Similarity=0.470 Sum_probs=81.1
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA 85 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~ 85 (138)
..|+++++.++++.+ .+|||+|++++|..+|||||+|+|..++..... .++++++||+||++|. ++..++
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~----~~~~~~~iv~~c~~g~-~s~~~~---- 71 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEGL----PLVGANAIIFHCRSGM-RTQQNA---- 71 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccccc----CCCCCCcEEEEeCCCc-hHHHHH----
Confidence 578999999998875 899999999999999999999999887754322 2478899999999987 554444
Q ss_pred HHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540 86 NYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (138)
Q Consensus 86 ~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (138)
..|. +.||.+|++|.||+.+|...|+|+
T Consensus 72 ~~L~----~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 72 ERLA----AISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHH----HcCCccEEEeeCCHHHHHHCcCCC
Confidence 3443 389999999999999999998874
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.92 E-value=9.8e-25 Score=137.08 Aligned_cols=94 Identities=18% Similarity=0.284 Sum_probs=76.4
Q ss_pred cCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHH----HHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540 8 ISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FDLIQEVRGKDTLVFHCALSQVRGPTCAK 82 (138)
Q Consensus 8 i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~----~~~~~~~~~~~~iv~~c~~g~~~~~~~~~ 82 (138)
|+++++.++++. .+.+|||||++.||..||||||+|+|+..+...+ ......++++++||+||.+|. ++..++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-rs~~aa- 78 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEG-SSQFVA- 78 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCC-cHHHHH-
Confidence 688999998875 4689999999999999999999999998775433 333444678899999999998 665555
Q ss_pred HHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 83 RLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
..|. +.||+ +++|.||+.+|.
T Consensus 79 ---~~L~----~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 79 ---ELLA----ERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred ---HHHH----HcCce-eEEeCCcHHhhc
Confidence 4443 48997 999999999995
No 7
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.91 E-value=4.8e-24 Score=136.83 Aligned_cols=106 Identities=52% Similarity=0.888 Sum_probs=84.6
Q ss_pred ccccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh--cCCCeEEEEeCCCCCCcHHH
Q 032540 5 ISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~--~~~~~iv~~c~~g~~~~~~~ 80 (138)
++.|+++++.+++.. ++.+|||||+. ||..||||||+|+|+..+...+..+.+.. +++++||+||.++..++..+
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHHH
Confidence 467999999999875 45789999999 99999999999999998877666665443 56789999998554488888
Q ss_pred HHHHHHHHHHhhhh--CCCccEEEeccchhhhhhC
Q 032540 81 AKRLANYLDEVKED--TGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 81 ~~~~~~~L~~~l~~--~G~~~v~~l~gG~~~w~~~ 113 (138)
+.++...|.. ++ .|+.+|++|+||+.+|.+.
T Consensus 80 a~~l~~~~~~--~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 80 ARKFLRYLDE--EDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HHHHHHHHHH--hccccCCCeEEEEcChHHHHHhh
Confidence 8666544422 11 4999999999999999764
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.91 E-value=1.8e-24 Score=134.74 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=73.2
Q ss_pred cCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540 8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA 85 (138)
Q Consensus 8 i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~ 85 (138)
|+++++.+++..+ +.+|||||++.||..||||||+|+|...+......+.. .++++||+||++|. ++..++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~-rs~~aa---- 73 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGV-RADMTA---- 73 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCC-hHHHHH----
Confidence 6889999998754 57899999999999999999999998776554444421 24678999999998 555544
Q ss_pred HHHHHhhhhCCCccEEEeccchhhhh
Q 032540 86 NYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 86 ~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
..|. ..||+ |++|+||+.+|.
T Consensus 74 ~~L~----~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 74 SWLA----QMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHH----HcCCE-EEEecCcHHHhc
Confidence 3443 49998 999999999996
No 9
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.91 E-value=1.5e-23 Score=134.60 Aligned_cols=101 Identities=33% Similarity=0.597 Sum_probs=80.4
Q ss_pred cccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh--cCCCeEEEEeCCCCCCc
Q 032540 6 SYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRG 77 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~--~~~~~iv~~c~~g~~~~ 77 (138)
+.|+++++.+++.++ +.+|||||+. ||..||||||+|+|+..+...+.++.+.+ ...++||+||.++..++
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs 80 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRG 80 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCccc
Confidence 578999999999864 5899999999 99999999999999988877665554432 34578999999754477
Q ss_pred HHHHHHHHHHHHHhhhhCCC--ccEEEeccchhhhh
Q 032540 78 PTCAKRLANYLDEVKEDTGI--NSIFVLERGFKGWE 111 (138)
Q Consensus 78 ~~~~~~~~~~L~~~l~~~G~--~~v~~l~gG~~~w~ 111 (138)
..++.++...|+ +.|| .++++|+||+.+|.
T Consensus 81 ~~a~~~l~~~l~----~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 81 PRAARWFADYLR----KVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHHHHHHHHHh----ccCCCCCeEEEECChhhhhc
Confidence 777755554443 4775 68999999999995
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.91 E-value=1.1e-23 Score=142.98 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=79.5
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCC----ccCCC---------ccccceecCC---cchhH----HHHHHHHH---h
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDE----RSYDG---------HITGSLHYPS---DSFTD----KIFDLIQE---V 60 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~----e~~~g---------hipgAi~ip~---~~l~~----~~~~~~~~---~ 60 (138)
.+..|+++++.+++++++.+|||||+.+ +|..| |||||+|+|. ..+.. .+...... .
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 5678999999999987788999999876 45444 9999999984 23222 12222211 1
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (138)
+++++||+||.+|..++..++ +.|. .+||++|++|+||+.+|+.+|+|+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa----~~L~----~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAA----KRAL----AYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHH----HHHH----hcCCcceEEecCCHHHHHHcCCCC
Confidence 578999999998864555544 3443 499999999999999999999985
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.90 E-value=5.8e-24 Score=138.19 Aligned_cols=104 Identities=14% Similarity=0.234 Sum_probs=83.4
Q ss_pred CccccCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHH------HhcCCCeEEEEeCCCCCC
Q 032540 4 SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ------EVRGKDTLVFHCALSQVR 76 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~------~~~~~~~iv~~c~~g~~~ 76 (138)
....|+++++.+++++ .+.+|||+|++.||..||||||+|+|+..+......+.. .++.+++||+||++|. +
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-r 84 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGN-D 84 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCC-c
Confidence 5678999999999876 578899999999999999999999999887654433311 1367899999999987 6
Q ss_pred cHHHHHHHHHHHHHhhhhCCC-ccEEEeccchhhhhhCCCC
Q 032540 77 GPTCAKRLANYLDEVKEDTGI-NSIFVLERGFKGWEASGKP 116 (138)
Q Consensus 77 ~~~~~~~~~~~L~~~l~~~G~-~~v~~l~gG~~~w~~~g~p 116 (138)
+..++ ..|. ..|| .+|++|+||+.+|..+..+
T Consensus 85 s~~aa----~~L~----~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 85 SQTAV----RKLK----ELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred HHHHH----HHHH----HcCCccceeeecchHHHHHHHhCc
Confidence 65555 3444 4999 7999999999999887544
No 12
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.90 E-value=6.6e-24 Score=133.57 Aligned_cols=96 Identities=23% Similarity=0.374 Sum_probs=77.4
Q ss_pred ccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540 7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL 84 (138)
Q Consensus 7 ~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~ 84 (138)
.|+++++.++++.+ +.+|||+|+..||..+|||||+|+|+..+...+..+.. .++++++|+||++|. ++..++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~-rs~~~~--- 75 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGG-RSMQVA--- 75 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCc-hHHHHH---
Confidence 37899999998854 57899999999999999999999999887665555421 134789999999987 555554
Q ss_pred HHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 85 ANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
..|.+ .||++|++|+||+.+|..
T Consensus 76 -~~l~~----~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 76 -QWLLR----QGFENVYNLQGGIDAWSL 98 (101)
T ss_pred -HHHHH----cCCccEEEecCCHHHHhh
Confidence 34433 899999999999999965
No 13
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.90 E-value=1.2e-23 Score=134.34 Aligned_cols=100 Identities=17% Similarity=0.316 Sum_probs=79.5
Q ss_pred cccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC-CCcHHHHH
Q 032540 6 SYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ-VRGPTCAK 82 (138)
Q Consensus 6 ~~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~-~~~~~~~~ 82 (138)
..++++++.+++.. ++.+|||+|++.+|..||||||+|+|...+... ....++++++||+||++|. .++..++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~~a- 83 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATKAA- 83 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHHHH-
Confidence 46899999999874 358999999999999999999999998876522 1233578899999999874 2444443
Q ss_pred HHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (138)
..|+ ..|| ++++|+||+.+|..+|+|+
T Consensus 84 ---~~l~----~~G~-~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 84 ---LKLA----ELGF-PVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred ---HHHH----HcCC-eEEEecCCHHHHHHCCCCC
Confidence 3443 4899 5999999999999999875
No 14
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.90 E-value=1.9e-23 Score=135.67 Aligned_cols=105 Identities=28% Similarity=0.428 Sum_probs=77.9
Q ss_pred cccCHHHHHhhhCC------CCeEEEEecCCCccCCCccccceecCCc-chhHHHHHHH--HHhcCCCeEEEEeC-CCCC
Q 032540 6 SYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFDLI--QEVRGKDTLVFHCA-LSQV 75 (138)
Q Consensus 6 ~~i~~~~~~~~l~~------~~~~liDvR~~~e~~~ghipgAi~ip~~-~l~~~~~~~~--~~~~~~~~iv~~c~-~g~~ 75 (138)
..|+++++.+++.+ ++++|||||++.||..||||||+|+|.. .+...+.... ..++++++||+||. +|.
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~- 80 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSK- 80 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCccc-
Confidence 57999999999875 3689999999999999999999999986 4554332211 01467899999997 776
Q ss_pred CcHHHHHHHHHHHHHh----hhhCCCccEEEeccchhhhh
Q 032540 76 RGPTCAKRLANYLDEV----KEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 76 ~~~~~~~~~~~~L~~~----l~~~G~~~v~~l~gG~~~w~ 111 (138)
|+..++..+....+.. +...||.+|++|+|||.+|.
T Consensus 81 rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 81 RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 7777775444321100 01149999999999999985
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.90 E-value=1.5e-23 Score=130.51 Aligned_cols=92 Identities=27% Similarity=0.432 Sum_probs=76.4
Q ss_pred ccCHHHHHhhhCC-CCeEEEEecCCCccCC--CccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540 7 YISGSQLLSLKRR-PNIAVIDVRDDERSYD--GHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (138)
Q Consensus 7 ~i~~~~~~~~l~~-~~~~liDvR~~~e~~~--ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~ 83 (138)
.|+++++.++++. .+.+|||+|++.+|.. ||||||+|+|+.++...+.. ++++++||+||.+|. ++..++
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~----~~~~~~ivv~c~~g~-~s~~a~-- 73 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGD----LDRDRPVVVYCYHGN-SSAQLA-- 73 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhh----cCCCCCEEEEeCCCC-hHHHHH--
Confidence 3789999998876 4689999999999999 99999999999877655443 478899999999876 555554
Q ss_pred HHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 84 LANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
..|+ ..||++|++|+||+.+|.
T Consensus 74 --~~l~----~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 74 --QALR----EAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred --HHHH----HcCCceEEEcCCCHHHhc
Confidence 4443 489999999999999995
No 16
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.90 E-value=3.7e-23 Score=135.50 Aligned_cols=95 Identities=25% Similarity=0.528 Sum_probs=72.3
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHH--------------------------HHHHH----
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--------------------------IFDLI---- 57 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~--------------------------~~~~~---- 57 (138)
||++++.++++ ++.+|||||++.||..||||||+|||+..+... +..+.
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAW 79 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 68999999987 568999999999999999999999998643211 11121
Q ss_pred -HHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 58 -QEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 58 -~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
..++++++||+||++++.++..++ ..|+ .+|| +|++|+||+.+|+.
T Consensus 80 ~~~i~~~~~vvvyC~~~G~rs~~a~----~~L~----~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 80 EARLERDPKLLIYCARGGMRSQSLA----WLLE----SLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HhccCCCCeEEEEeCCCCccHHHHH----HHHH----HcCC-ceeEeCCcHHHHHh
Confidence 246788999999985333665554 3343 4899 69999999999964
No 17
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.90 E-value=9e-24 Score=134.56 Aligned_cols=100 Identities=29% Similarity=0.553 Sum_probs=75.2
Q ss_pred CHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcch--------hHH----HHHHHHHhcCCCeEEEEeCCCCCC
Q 032540 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDK----IFDLIQEVRGKDTLVFHCALSQVR 76 (138)
Q Consensus 9 ~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l--------~~~----~~~~~~~~~~~~~iv~~c~~g~~~ 76 (138)
|++|+.+++.+++++|||+|+..+|..||||||+|+|...+ ... +......++++++||+||.+|. +
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~ 79 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-R 79 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-H
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-c
Confidence 68999999977789999999999999999999999999433 112 2222233577889999998877 4
Q ss_pred cHHHHHH-HHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 77 GPTCAKR-LANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 77 ~~~~~~~-~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
+..++.. ....| ...||++|++|+|||.+|.++
T Consensus 80 ~~~~~~~~~~~~l----~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 80 SGSAAAARVAWIL----KKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHH----HHTTTSSEEEETTHHHHHHHH
T ss_pred cchhHHHHHHHHH----HHcCCCCEEEecChHHHHhcC
Confidence 4444432 22224 448999999999999999763
No 18
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.89 E-value=2e-23 Score=128.78 Aligned_cols=89 Identities=25% Similarity=0.508 Sum_probs=73.1
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHH
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANY 87 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~ 87 (138)
++++++.+++. ++.++||+|+.++|..||||||+|+|..++...+.. ++++++||+||++|. ++..++ ..
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~----~~~~~~vvl~c~~g~-~a~~~a----~~ 70 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNE----LPKDKEIIVYCAVGL-RGYIAA----RI 70 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHh----cCCCCcEEEEcCCCh-hHHHHH----HH
Confidence 57899999884 567899999999999999999999998877655443 477899999999876 555554 34
Q ss_pred HHHhhhhCCCccEEEeccchhhhh
Q 032540 88 LDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 88 L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
|+ ..|| ++++|+||+.+|+
T Consensus 71 L~----~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 71 LT----QNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HH----HCCC-CEEEecCCHHHhc
Confidence 43 4999 9999999999996
No 19
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.3e-23 Score=132.53 Aligned_cols=106 Identities=23% Similarity=0.382 Sum_probs=83.5
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHH----HHHHHHH----h-cCCCeEEEEeCCCC
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK----IFDLIQE----V-RGKDTLVFHCALSQ 74 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~----~~~~~~~----~-~~~~~iv~~c~~g~ 74 (138)
.+..++.++++++++.++.++||||.++||..||+|.+||||+...... -.++.++ . +.++.|||+|.+|.
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV 100 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence 5567899999999998889999999999999999999999998543221 1122222 2 34569999999998
Q ss_pred CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540 75 VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 118 (138)
Q Consensus 75 ~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~ 118 (138)
|+..|.. .|. ..||++|.++.||+.+|.+.++|..
T Consensus 101 -Rs~~A~~----~l~----s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 101 -RSLKATK----ILV----SAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred -chhHHHH----HHH----HcCcccccccCccHHHHHHccCCCC
Confidence 7766653 333 3999999999999999999988753
No 20
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.89 E-value=2e-23 Score=131.39 Aligned_cols=98 Identities=27% Similarity=0.465 Sum_probs=75.9
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCcc-CCCccccceecCCcchhHHHHHH----HHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFDL----IQEVRGKDTLVFHCALSQVRGPTCAK 82 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~-~~ghipgAi~ip~~~l~~~~~~~----~~~~~~~~~iv~~c~~g~~~~~~~~~ 82 (138)
|+++++.++++.++.+|||+|++.+| ..||||||+|+|...+....... ...++++++||+||++|. ++..++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~~~- 78 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGW-RSALAG- 78 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCC-cHHHHH-
Confidence 57899999988667899999999998 57999999999987665332210 012467899999999887 555544
Q ss_pred HHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
..|. ..||++|++|+||+.+|..+|
T Consensus 79 ---~~l~----~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 79 ---KTLQ----DMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred ---HHHH----HcChHHhEeecCcHHHHhhcC
Confidence 4443 389999999999999997664
No 21
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.89 E-value=1.5e-22 Score=131.27 Aligned_cols=99 Identities=23% Similarity=0.360 Sum_probs=76.9
Q ss_pred cCHHHHHhhhCCCCeEEEEecCC-------CccCCCccccceecCCcchhH-------------HHHHHHHH--hcCCCe
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDD-------ERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE--VRGKDT 65 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~-------~e~~~ghipgAi~ip~~~l~~-------------~~~~~~~~--~~~~~~ 65 (138)
|+++++.+++++++.+|||+|++ .+|..||||||+|+|+.++.. .+...... ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 78999999998777899999999 899999999999999866532 12222222 467899
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
||+||++|..++..++ ..|+ ..||++|++|+||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~----~~l~----~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAW----WTLR----YFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHH----HHHH----HcCCCCEEEecCCHHHHHhCc
Confidence 9999998643554443 3443 489999999999999998764
No 22
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.89 E-value=5.1e-23 Score=130.31 Aligned_cols=94 Identities=23% Similarity=0.369 Sum_probs=73.2
Q ss_pred CHHHHHhhhC-CCCeEEEEecCCCccCCCccccceecCCcchhHH-------HHHHHHH--hcCCCeEEEEeCCCCCCcH
Q 032540 9 SGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-------IFDLIQE--VRGKDTLVFHCALSQVRGP 78 (138)
Q Consensus 9 ~~~~~~~~l~-~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~-------~~~~~~~--~~~~~~iv~~c~~g~~~~~ 78 (138)
+++++.++++ .++.+|||+|++.+|..||||||+|+|+..+... +...... .+++++||+||.+|. ++.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGV-RSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcH-HHH
Confidence 6788999887 6679999999999999999999999998776432 2222211 256789999999887 554
Q ss_pred HHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 79 TCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 79 ~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.++ ..|. .+||++|++|+||+.+|.
T Consensus 81 ~~~----~~l~----~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 81 AAA----ELAR----SLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHH----HHHH----HcCCccceecCCcHHHHc
Confidence 443 4443 499999999999999995
No 23
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.89 E-value=6.6e-23 Score=136.89 Aligned_cols=98 Identities=24% Similarity=0.332 Sum_probs=77.5
Q ss_pred HHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHh
Q 032540 13 LLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEV 91 (138)
Q Consensus 13 ~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~ 91 (138)
+.+++.. .+++|||||+..+|..||||||+|+|...|...+..+ +.+.+|||||.+|. ++..++ ..|.
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l----~~~~~vVv~c~~g~-~a~~aa----~~L~-- 70 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKL----PAAERYVLTCGSSL-LARFAA----ADLA-- 70 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhc----CCCCCEEEEeCCCh-HHHHHH----HHHH--
Confidence 3445543 3589999999999999999999999987776655554 67789999999875 444433 4454
Q ss_pred hhhCCCccEEEeccchhhhhhCCCCccccCCC
Q 032540 92 KEDTGINSIFVLERGFKGWEASGKPVCRCTDV 123 (138)
Q Consensus 92 l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~ 123 (138)
..||.+|++|+||+.+|..+|+|++++...
T Consensus 71 --~~G~~~v~~L~GG~~aW~~~g~pl~~~~~~ 100 (145)
T cd01535 71 --ALTVKPVFVLEGGTAAWIAAGLPVESGETR 100 (145)
T ss_pred --HcCCcCeEEecCcHHHHHHCCCCcccCCCC
Confidence 489999999999999999999999986443
No 24
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.88 E-value=5.7e-23 Score=129.97 Aligned_cols=93 Identities=22% Similarity=0.338 Sum_probs=71.4
Q ss_pred cCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH---HH------HHHHHHhcCCCeEEEEeCCCCCC
Q 032540 8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD---KI------FDLIQEVRGKDTLVFHCALSQVR 76 (138)
Q Consensus 8 i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~---~~------~~~~~~~~~~~~iv~~c~~g~~~ 76 (138)
||++++.+++..+ +++|||+|++.+|..||||||+|+|+..+.. .+ ..+.. ..+++||+||.+|. +
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~-~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHK-H 77 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCc-c
Confidence 6899999998753 6899999999999999999999999865421 11 11111 24689999999987 5
Q ss_pred cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 77 ~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+..++ ..|. ..||++|++|+||+.+|+
T Consensus 78 s~~~a----~~L~----~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFA----AFLV----KCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHH----HHHH----HcCCCCEEEEeCcHHHhc
Confidence 54443 3443 499999999999999995
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.88 E-value=1.5e-22 Score=130.66 Aligned_cols=97 Identities=18% Similarity=0.356 Sum_probs=76.7
Q ss_pred cCHHHHHhhhCC-CCeEEEEecCCCccC-CCccccceecCCcchhH------HHHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540 8 ISGSQLLSLKRR-PNIAVIDVRDDERSY-DGHITGSLHYPSDSFTD------KIFDLIQEVRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 8 i~~~~~~~~l~~-~~~~liDvR~~~e~~-~ghipgAi~ip~~~l~~------~~~~~~~~~~~~~~iv~~c~~g~~~~~~ 79 (138)
|+++++.+++++ ++.+|||||++.+|+ .||||||+|+|..++.. ....+....+++++||+||++|. ++..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~-rs~~ 79 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGN-RSIA 79 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCc-cHHH
Confidence 688999999986 578999999999999 99999999999875532 22233222367899999999987 6665
Q ss_pred HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
++ ..|. ..||++++.+.||+.+|...
T Consensus 80 aa----~~L~----~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 80 AA----EAAA----QAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HH----HHHH----HCCCCeEEECcCceecCCCC
Confidence 55 3443 49999999999999999664
No 26
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.87 E-value=5.2e-22 Score=145.56 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=86.5
Q ss_pred cccCHHHHHhhhCCCCeEEEEecC----------CCccCCCccccceecCCcchh-------------HHHHHHHHH--h
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRD----------DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--V 60 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~----------~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~ 60 (138)
..++++++.+++++++++|||+|+ +.+|..||||||+|+|+..+. +.+..++.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 348999999999888899999997 578899999999999864321 234444444 4
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF 125 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~ 125 (138)
+++++||+||.++.+.+..++ ..| ...||++|++|+||+.+|.++|+|+++....+.
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~----~~l----~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~ 141 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAW----WML----RTFGVEKVSILAGGLAGWQRDDLLLEEGAVELP 141 (281)
T ss_pred CCCCEEEEECCCCCchHHHHH----HHH----HHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCC
Confidence 778999999987763333332 334 348999999999999999999999998765553
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.87 E-value=3.9e-22 Score=128.58 Aligned_cols=95 Identities=17% Similarity=0.367 Sum_probs=73.6
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccCC-----------CccccceecCCcchh---------HHHHHHHHH--hcCCCe
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSYD-----------GHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDT 65 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~~-----------ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~~ 65 (138)
++++++.++++.++++|||+|+..+|.. ||||||+|+|+..+. ..+..+... ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 5789999998766789999999999977 999999999987543 233333333 357889
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
||+||++|. ++..++ ..|. .+||+++++|+||+.+|.
T Consensus 81 iv~yc~~g~-~s~~~~----~~l~----~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 81 VIVYCGSGV-TACVLL----LALE----LLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred EEEECCcHH-HHHHHH----HHHH----HcCCCCeeeeCChHHHhc
Confidence 999999876 544443 3443 499999999999999996
No 28
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.87 E-value=2.6e-22 Score=125.21 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=64.2
Q ss_pred CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHH--HHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC
Q 032540 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG 96 (138)
Q Consensus 19 ~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~--~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G 96 (138)
.++++|||+|++.+|..||||||+|+|...+......+ ....+++++||+||++|. ++..++ ..|+ ..|
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~~~----~~l~----~~G 80 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSL-LARFAA----QELL----ALG 80 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChH-HHHHHH----HHHH----HcC
Confidence 45689999999999999999999999986554322222 222467889999999877 444443 3443 489
Q ss_pred CccEEEeccchhhhh
Q 032540 97 INSIFVLERGFKGWE 111 (138)
Q Consensus 97 ~~~v~~l~gG~~~w~ 111 (138)
|++|++|+||+.+|.
T Consensus 81 ~~~v~~l~GG~~~W~ 95 (96)
T cd01529 81 GKPVALLDGGTSAWV 95 (96)
T ss_pred CCCEEEeCCCHHHhc
Confidence 999999999999996
No 29
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.87 E-value=1.3e-21 Score=155.81 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=87.4
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcch-------------hHHHHHHHHH--hcCCCeEEEEe
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF-------------TDKIFDLIQE--VRGKDTLVFHC 70 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l-------------~~~~~~~~~~--~~~~~~iv~~c 70 (138)
..|+++++.+++++++++|||+|+.++|..||||||+|+|+..+ .+.+...+.. +.++++||+||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 35999999999998889999999999999999999999986421 1234444444 46789999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCc
Q 032540 71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP 124 (138)
Q Consensus 71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~ 124 (138)
++|..++..++ +.| +.+|+++|++|+||+.+|..+|+|++++...+
T Consensus 89 ~~g~~~A~R~~----w~L----~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~ 134 (610)
T PRK09629 89 DEGGGWAGRFI----WLL----DVIGHSGYHYLDGGVLAWEAQALPLSTDVPPV 134 (610)
T ss_pred CCCCchHHHHH----HHH----HHcCCCCEEEcCCCHHHHHHcCCccccCCCCC
Confidence 98764443332 444 34999999999999999999999998875443
No 30
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.86 E-value=5.4e-22 Score=150.71 Aligned_cols=106 Identities=24% Similarity=0.380 Sum_probs=87.0
Q ss_pred ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL 84 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~ 84 (138)
++.|+++++.++++. +.+|||+|+++||..||||||+|+|+..+...+..+. .+++++||+||++|. ++..++
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~--~~~~~~IvvyC~~G~-rs~~aa--- 74 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHL--PDRDREIVLICASGT-RSAHAA--- 74 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhc--CCCCCeEEEEcCCCc-HHHHHH---
Confidence 578999999999875 4899999999999999999999999887765544331 257899999999887 555554
Q ss_pred HHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540 85 ANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD 122 (138)
Q Consensus 85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~ 122 (138)
..|+ ..||++|++|+||+.+|.++|+|++....
T Consensus 75 -~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 75 -ATLR----ELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred -HHHH----HcCCCceEeecCcHHHHHhcCCccccccC
Confidence 3443 49999999999999999999999887543
No 31
>PRK01415 hypothetical protein; Validated
Probab=99.86 E-value=1.1e-21 Score=140.36 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=81.8
Q ss_pred ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHH--HHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQEVRGKDTLVFHCALSQVRGPTCAK 82 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~--~~~~~~~~~iv~~c~~g~~~~~~~~~ 82 (138)
-+.|+++++.+++++++++|||||++.||..||||||+|+|...+.+.-..+ ...++++++|++||.+|. |+..++
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa- 188 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKST- 188 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHH-
Confidence 4579999999999888899999999999999999999999988765422111 122478899999999987 666655
Q ss_pred HHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
.+|.+ .||++|+.|.||+.+|.+..
T Consensus 189 ---~~L~~----~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 189 ---SLLKS----IGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred ---HHHHH----cCCCcEEEechHHHHHHHhc
Confidence 45544 89999999999999998754
No 32
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.86 E-value=7.5e-22 Score=122.57 Aligned_cols=89 Identities=27% Similarity=0.568 Sum_probs=68.0
Q ss_pred CCCeEEEEecCCCccCCCccccceecCCcchhHHH--------HHH--HHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHH
Q 032540 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--------FDL--IQEVRGKDTLVFHCALSQVRGPTCAKRLANYL 88 (138)
Q Consensus 19 ~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~--------~~~--~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L 88 (138)
+++++|||+|+..+|..+|||||+|+|...+.... ... ....+++++||+||.+|. ++..++ ..|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~-~a~~~~----~~l 76 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGN-RSAKAA----WLL 76 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCc-HHHHHH----HHH
Confidence 35689999999999999999999999987654321 111 122467899999998776 554443 445
Q ss_pred HHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540 89 DEVKEDTGINSIFVLERGFKGWEASGKP 116 (138)
Q Consensus 89 ~~~l~~~G~~~v~~l~gG~~~w~~~g~p 116 (138)
. ..||++|++|+||+.+|...+.|
T Consensus 77 ~----~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 77 R----ELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred H----HcCCCceEEecCCHHHHHhcCCC
Confidence 4 49999999999999999988764
No 33
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.85 E-value=3.7e-21 Score=143.36 Aligned_cols=108 Identities=21% Similarity=0.324 Sum_probs=83.2
Q ss_pred cccCHHHHHhhhCCCCeEEEEec--------C-CCccCCCccccceecCCcchh-------------HHHHHHHHH--hc
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVR--------D-DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VR 61 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR--------~-~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~~ 61 (138)
..|++++|.++++.++++|||+| + ..+|..||||||+|+|+..+. +.+..++.. +.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~ 101 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE 101 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence 46999999999987789999996 2 268999999999999865432 233444444 35
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT 121 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~ 121 (138)
++++|||||.+|...+..++ +.| +.+||++|++|+||+.+|..+|+|+++..
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~----~~L----~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVW----WMF----RVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred CCCEEEEEcCCCcchHHHHH----HHH----HHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 77899999988764333332 344 34999999999999999999999998864
No 34
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.85 E-value=2e-21 Score=120.38 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=64.9
Q ss_pred hhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhc-CCCeEEEEeCCCCCC-cHHHHHHHHHHHHHhhh
Q 032540 16 LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-GKDTLVFHCALSQVR-GPTCAKRLANYLDEVKE 93 (138)
Q Consensus 16 ~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~-~~~~iv~~c~~g~~~-~~~~~~~~~~~L~~~l~ 93 (138)
++++++++|||+|++.+|..+|||||+|+|...+.... ...++ ++++||+||.+|.+. +..++ ..|.
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---~~~~~~~~~~ivl~c~~G~~~~s~~aa----~~L~---- 73 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---WVRIPRRDTPIVVYGEGGGEDLAPRAA----RRLS---- 73 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---HhhCCCCCCeEEEEeCCCCchHHHHHH----HHHH----
Confidence 45556799999999999999999999999987654221 11223 478999999998732 23333 4443
Q ss_pred hCCCccEEEeccchhhhhh
Q 032540 94 DTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 94 ~~G~~~v~~l~gG~~~w~~ 112 (138)
+.||++|++|+||+.+|.+
T Consensus 74 ~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 74 ELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred HcCccCEEEccCCHHHHcC
Confidence 4999999999999999963
No 35
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.84 E-value=6.1e-21 Score=121.22 Aligned_cols=99 Identities=25% Similarity=0.462 Sum_probs=79.1
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCcccc-ceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHH
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITG-SLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLD 89 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipg-Ai~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~ 89 (138)
..........+.+|||||++.||+.+|||| ++|+|..++........ .++++++|+||.+|. ++..++ ..|+
T Consensus 10 ~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~-rS~~aa----~~L~ 82 (110)
T COG0607 10 DEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGV-RSAAAA----AALK 82 (110)
T ss_pred HHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCC-ChHHHH----HHHH
Confidence 333344445579999999999999999999 99999998876544332 468899999999998 666665 4554
Q ss_pred HhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540 90 EVKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (138)
Q Consensus 90 ~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (138)
. .||.+++.+.||+.+|...++|++..
T Consensus 83 ~----~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 83 L----AGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred H----cCCccccccCCcHHHHHhcCCCcccC
Confidence 4 99988889999999999999988763
No 36
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.84 E-value=5.1e-21 Score=138.38 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=79.5
Q ss_pred CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh--cCCCeEEEEeCCCCC
Q 032540 4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQV 75 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~--~~~~~iv~~c~~g~~ 75 (138)
....++++++.++++.+ +.+|||||++.||+.||||||+|+|+.++.+...++.+.. .++++||+||.+|.
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~- 186 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGI- 186 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCH-
Confidence 34679999999988642 4799999999999999999999999987765433322111 26789999999998
Q ss_pred CcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 76 RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 76 ~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
|+..++ .+|+ +.||++|+.|.||+.+|.+.
T Consensus 187 Rs~~Aa----~~L~----~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 187 RCEKAA----IHMQ----EVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred HHHHHH----HHHH----HcCCcceEEeccCHHHHHHh
Confidence 666665 4554 39999999999999999774
No 37
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.84 E-value=5.6e-21 Score=141.71 Aligned_cols=101 Identities=17% Similarity=0.308 Sum_probs=82.2
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCCCcHHHH
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQVRGPTCA 81 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~~~~~~~ 81 (138)
....++++++.+++.+++.+|||||++.||..||||||+|+|+..+.+....+.+. ..++++||+||.+|. |+..++
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~-Rs~~aa 188 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGI-RCEKAS 188 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCc-HHHHHH
Confidence 34679999999999887899999999999999999999999998876544433222 246789999999998 665554
Q ss_pred HHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 82 KRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
.+|.+ .||++|+.|+||+.+|.+.
T Consensus 189 ----~~L~~----~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 189 ----AWMKH----EGFKEVYQLEGGIITYGED 212 (314)
T ss_pred ----HHHHH----cCCCcEEEecchHHHHHHh
Confidence 45543 8999999999999999764
No 38
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.84 E-value=5.4e-21 Score=116.81 Aligned_cols=88 Identities=25% Similarity=0.511 Sum_probs=68.8
Q ss_pred HHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhh
Q 032540 13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVK 92 (138)
Q Consensus 13 ~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l 92 (138)
+.+++..++.+|||+|++.+|..+|||||+|+|...+.... .....+++++||+||++|. ++..++ ..|+
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~-~a~~~~----~~l~--- 71 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGN-RSARAA----KLLR--- 71 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCc-hHHHHH----HHHH---
Confidence 34555566899999999999999999999999988765432 1223378899999999876 555554 4554
Q ss_pred hhCCCccEEEeccchhhhh
Q 032540 93 EDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 93 ~~~G~~~v~~l~gG~~~w~ 111 (138)
..||.++++|+||+.+|.
T Consensus 72 -~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 72 -KAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred -HhCcccEEEecCChhhcC
Confidence 499999999999999994
No 39
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.82 E-value=2.1e-20 Score=117.59 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=63.9
Q ss_pred CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccE
Q 032540 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI 100 (138)
Q Consensus 21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v 100 (138)
...+||+|++++|..||||||+|+|..++...+..+. .+++++||+||.+|. ++..++ ..|. ..||+++
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~-rS~~aa----~~L~----~~G~~~v 86 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGR-QSGMAK----DILL----DMGYTHA 86 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCH-HHHHHH----HHHH----HcCCCeE
Confidence 5679999999999999999999999988776655542 145678999999987 665554 4443 4999999
Q ss_pred EEeccchhhhhh
Q 032540 101 FVLERGFKGWEA 112 (138)
Q Consensus 101 ~~l~gG~~~w~~ 112 (138)
+++ ||+.+|.-
T Consensus 87 ~~~-GG~~~~~~ 97 (101)
T TIGR02981 87 ENA-GGIKDIAM 97 (101)
T ss_pred Eec-CCHHHhhh
Confidence 875 99999953
No 40
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.82 E-value=8.2e-20 Score=121.04 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=71.0
Q ss_pred cCHHHHHhhhC----CCCeEEEEecCC--------CccCC------------CccccceecCCcchh-------------
Q 032540 8 ISGSQLLSLKR----RPNIAVIDVRDD--------ERSYD------------GHITGSLHYPSDSFT------------- 50 (138)
Q Consensus 8 i~~~~~~~~l~----~~~~~liDvR~~--------~e~~~------------ghipgAi~ip~~~l~------------- 50 (138)
+|++++.+.++ .++++|||+|.. ++|.. ||||||+|+|+..+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 57899999987 467999999987 88988 999999999965431
Q ss_pred HHHHHHHHH--hcCCCeEEEEeCC--CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 51 DKIFDLIQE--VRGKDTLVFHCAL--SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 51 ~~~~~~~~~--~~~~~~iv~~c~~--g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+.+..++.. +.++++||+||++ +...+..+ ...| +.+|+++|++|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~----~~~l----~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHI----ALAA----RLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHH----HHHH----HHcCCCCeEEeCCCHHHhh
Confidence 133444433 5678999999975 22222222 2333 4599999999999999996
No 41
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=5.7e-20 Score=134.81 Aligned_cols=104 Identities=17% Similarity=0.318 Sum_probs=77.4
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccC-----------CCccccceecCCcchh--------HHHHHHHHH--hcCCCeE
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT--------DKIFDLIQE--VRGKDTL 66 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~-----------~ghipgAi~ip~~~l~--------~~~~~~~~~--~~~~~~i 66 (138)
.+.+++...++.++.+|||+|+.++|. .||||||+|+|...+. ..+..++.. ++++++|
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i 234 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI 234 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence 345666666666678999999999985 6999999999976543 223333322 4677899
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCcccc
Q 032540 67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC 120 (138)
Q Consensus 67 v~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~ 120 (138)
|+||++|. ++..++ ..| +.+||++|++|+||+.+|.. .++|++++
T Consensus 235 i~yC~~G~-~A~~~~----~~l----~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 235 IASCGSGV-TAAVVV----LAL----ATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred EEECCcHH-HHHHHH----HHH----HHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 99999887 444433 333 34899999999999999987 68998864
No 42
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.81 E-value=7e-20 Score=139.76 Aligned_cols=102 Identities=23% Similarity=0.326 Sum_probs=81.1
Q ss_pred CccccCHHHHHhhhCCC-CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540 4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK 82 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~-~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~ 82 (138)
....|+++++.++++.+ +.+|||+|++.||..+|||||+|+|+..+... .....++++++||+||++|. ++..++
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~-rS~~aa- 360 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGV-RSAEAL- 360 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCCh-HHHHHH-
Confidence 34679999999998754 57899999999999999999999998876531 11233478899999999987 555554
Q ss_pred HHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p 116 (138)
..|. +.||++|++|+||+.+|..+..+
T Consensus 361 ---~~L~----~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 361 ---AALK----KAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred ---HHHH----HcCCCcEEEecCcHHHHHHhcCC
Confidence 4443 48999999999999999887543
No 43
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.80 E-value=1.8e-19 Score=134.35 Aligned_cols=104 Identities=20% Similarity=0.263 Sum_probs=79.1
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCcc-----------CCCccccceecCCcchh---------HHHHHHHHH--hcCCCe
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDT 65 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~~ 65 (138)
++.+++.+.+..++.+|||+|+..+| ..||||||+|+|+..+. +.+..++.. ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 67889998887777899999999888 46999999999986432 234444432 567899
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCcccc
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRC 120 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~~ 120 (138)
||+||++|. ++..++ ..| +.+||++|++|+||+.+|... .+|++++
T Consensus 272 iv~yC~sG~-~A~~~~----~~L----~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 272 IVASCGTGV-TACILA----LGL----HRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred EEEECCcHH-HHHHHH----HHH----HHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 999999876 443332 233 349999999999999999775 5787764
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.80 E-value=4.8e-20 Score=116.47 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=62.7
Q ss_pred CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccE
Q 032540 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI 100 (138)
Q Consensus 21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v 100 (138)
+-+|||+|+++||..+|||||+|+|..++...+..+. .+++++||+||++|. ++..++ ..|. ..||++|
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~-rS~~aa----~~L~----~~G~~~v 88 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGR-QSGQAK----EILS----EMGYTHA 88 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCCh-HHHHHH----HHHH----HcCCCeE
Confidence 4579999999999999999999999987766555442 145678999999886 555554 3443 4899999
Q ss_pred EEeccchhhhhh
Q 032540 101 FVLERGFKGWEA 112 (138)
Q Consensus 101 ~~l~gG~~~w~~ 112 (138)
++ .||+.+|.-
T Consensus 89 ~~-~GG~~~~~~ 99 (104)
T PRK10287 89 EN-AGGLKDIAM 99 (104)
T ss_pred Ee-cCCHHHHhh
Confidence 77 799999953
No 45
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.79 E-value=5.6e-19 Score=116.14 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=71.9
Q ss_pred ccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHH--------H------HHHHHh--cCCCeEEE
Q 032540 7 YISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--------F------DLIQEV--RGKDTLVF 68 (138)
Q Consensus 7 ~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~--------~------~~~~~~--~~~~~iv~ 68 (138)
.|+++++.++++. ++.+|||+|+..+|..+|||||+|+|+..+...- . .....+ ..+++|||
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VVv 80 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVVV 80 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEEE
Confidence 3789999999974 4789999999999999999999999987543110 0 011111 14689999
Q ss_pred EeCCCCC----CcHHHHHHHHHHHHHhhhh--CCCccEEEeccchhhhhhC
Q 032540 69 HCALSQV----RGPTCAKRLANYLDEVKED--TGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 69 ~c~~g~~----~~~~~~~~~~~~L~~~l~~--~G~~~v~~l~gG~~~w~~~ 113 (138)
||+++.. .....+.++...| .. .++.+|++|+||+.+|...
T Consensus 81 Yd~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 81 YDESSSDRERLREDSTAESVLGKL----LRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EeCCCcchhhccccchHHHHHHHH----HHhcCCCceEEEEcchHHHHHhh
Confidence 9998763 1112222333333 33 3677999999999999764
No 46
>PRK07411 hypothetical protein; Validated
Probab=99.78 E-value=3.3e-19 Score=135.91 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=79.3
Q ss_pred CccccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHH--HHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540 4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--IFDLIQEVRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~--~~~~~~~~~~~~~iv~~c~~g~~~~~~ 79 (138)
.++.|+++++.++++.+ +.+|||||++.||..||||||+|+|+.++... ...+ ..++++++||+||.+|. |+..
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l-~~l~~d~~IVvyC~~G~-RS~~ 357 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKV-KELLNGHRLIAHCKMGG-RSAK 357 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHH-hhcCCCCeEEEECCCCH-HHHH
Confidence 45779999999998754 57999999999999999999999998876431 1122 22467899999999987 6655
Q ss_pred HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116 (138)
Q Consensus 80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p 116 (138)
++ ..|++ .||++ +.|.||+.+|.++..|
T Consensus 358 aa----~~L~~----~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 358 AL----GILKE----AGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred HH----HHHHH----cCCCe-EEecchHHHHHHhcCC
Confidence 55 44543 89975 5799999999887554
No 47
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.78 E-value=1.8e-18 Score=137.90 Aligned_cols=106 Identities=16% Similarity=0.270 Sum_probs=81.9
Q ss_pred ccCHHHHHhhhCCCCeEEEEecCCCccC--------CCccccceecCCcch---------hHHHHHHHHH--hcCCCeEE
Q 032540 7 YISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSF---------TDKIFDLIQE--VRGKDTLV 67 (138)
Q Consensus 7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~--------~ghipgAi~ip~~~l---------~~~~~~~~~~--~~~~~~iv 67 (138)
.++.+++.+.+++++.+|||+|++++|. .||||||+|+|+..+ .+.+..++.. ++++++||
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV 227 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI 227 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence 4788999999887788999999999995 699999999997532 1234555443 46789999
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCccccC
Q 032540 68 FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT 121 (138)
Q Consensus 68 ~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~~~ 121 (138)
+||++|. ++..++ ..| +.+||++|++|+||+.+|... ++|++++.
T Consensus 228 vYC~sG~-rAa~~~----~~L----~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 228 THCQTHH-RSGFTY----LVA----KALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred EECCCCh-HHHHHH----HHH----HHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 9999986 444432 233 348999999999999999875 67888753
No 48
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.78 E-value=6.2e-19 Score=130.50 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=66.0
Q ss_pred CeEEEEecCCCccCCCccccceecCCcchh------------------------------HHHHHHHHHhcCCCeEEEEe
Q 032540 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFT------------------------------DKIFDLIQEVRGKDTLVFHC 70 (138)
Q Consensus 21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~------------------------------~~~~~~~~~~~~~~~iv~~c 70 (138)
+.+|||||++.||.+||||||+|+|+.+.. ..+.++....++...||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 468999999999999999999999995421 11222222224455699999
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540 71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (138)
Q Consensus 71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (138)
..|+.++..++ +.|.. .|| +|++|+||+.+|...+.+....
T Consensus 82 ~~gG~RS~~aa----~~L~~----~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 82 WRGGMRSGSLA----WLLAQ----IGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCCChHHHHHH----HHHHH----cCC-CEEEecChHHHHHHhhhhhhhc
Confidence 64444666665 44533 899 7999999999999988766653
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.9e-18 Score=124.29 Aligned_cols=117 Identities=22% Similarity=0.288 Sum_probs=88.9
Q ss_pred CccccCHHHHHhhhCCC-----CeEEEEecCC--CccCCCccccceecCCcchh-------------HHHHHHHHH--hc
Q 032540 4 SISYISGSQLLSLKRRP-----NIAVIDVRDD--ERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VR 61 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~-----~~~liDvR~~--~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~~ 61 (138)
....|+++++.+.++.+ ++.+++++.. .+|..+|||||++++.+... +.+..++.. +.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~ 88 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR 88 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 34569999999999855 5666666666 89999999999999876432 234444444 57
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcccCC
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSG 128 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~~~ 128 (138)
++++||+|.+.+...+..++ +.|+ .+|+++|++|+||+.+|+.+|+|++.....+.++.
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~----W~l~----~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~ 147 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAW----WLLR----YLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTT 147 (285)
T ss_pred CCCEEEEECCCCCeehHHHH----HHHH----HcCCCceEEecCCHHHHHHcCCCccCCCCCCCCcc
Confidence 88999999998876655554 4443 49999999999999999999999998655554433
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.77 E-value=1.3e-18 Score=130.35 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=73.3
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH--------------------------HHHH----HH
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--------------------------KIFD----LI 57 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~--------------------------~~~~----~~ 57 (138)
.+.+++.+++. .+.+|||||++.||..||||||+|+|+.+..+ .+.. .+
T Consensus 3 ~~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 3 PDAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW 81 (345)
T ss_pred CcHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence 34667777765 46899999999999999999999999954321 0111 11
Q ss_pred HHhc-CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540 58 QEVR-GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 119 (138)
Q Consensus 58 ~~~~-~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~ 119 (138)
..++ ++++||+||..|+.|+..++ +.|.. .|| ++++|+||+.+|...+.+...
T Consensus 82 ~~~~~~~~~ivvyC~rgG~RS~~aa----~~L~~----~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLRSGSVQ----QWLKE----AGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HhcccCCCeEEEEECCCChHHHHHH----HHHHH----cCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 1223 67899999965444666655 44433 899 699999999999988775554
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.73 E-value=4.5e-18 Score=128.32 Aligned_cols=94 Identities=21% Similarity=0.380 Sum_probs=72.8
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA 85 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~ 85 (138)
..++++++.+.. .+.+|||+|+++||..+|||||+|+|+.++...... ..++++++||+||++|. ++..++
T Consensus 261 ~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~--~~~~~~~~IvvyC~~G~-rS~~Aa---- 331 (355)
T PRK05597 261 EVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANP--PSVSAGDEVVVYCAAGV-RSAQAV---- 331 (355)
T ss_pred cccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcccc--ccCCCCCeEEEEcCCCH-HHHHHH----
Confidence 457788888553 357899999999999999999999998776543211 12367789999999987 555554
Q ss_pred HHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 86 NYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 86 ~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
..|+ +.||++|++|+||+.+|.+
T Consensus 332 ~~L~----~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 332 AILE----RAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHH----HcCCCCEEEecCcHHHHhh
Confidence 4443 4899999999999999965
No 52
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.2e-17 Score=121.68 Aligned_cols=106 Identities=21% Similarity=0.391 Sum_probs=80.9
Q ss_pred ccCHHHHHhhhCCCCeEEEEecCCCccCC----------CccccceecCCcchhH---------HHHHHHHH--hcCCCe
Q 032540 7 YISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTD---------KIFDLIQE--VRGKDT 65 (138)
Q Consensus 7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~----------ghipgAi~ip~~~l~~---------~~~~~~~~--~~~~~~ 65 (138)
.++.++++..++....+|||+|++++|.. ||||||+|+|...+.+ .+..+.+. ++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~ 236 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE 236 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence 35667788888877888999999999988 9999999999876643 34444422 678899
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCccccC
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT 121 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~~~ 121 (138)
+|+||++|. ++... +++ |+.+|+.++.+|+|++.+|.+. +.|++++.
T Consensus 237 vI~yCgsG~-~As~~--~~a------l~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 237 VIVYCGSGV-RASVT--WLA------LAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred EEEEcCCch-HHHHH--HHH------HHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 999999998 43332 222 3447888889999999999775 45887753
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.71 E-value=1.4e-17 Score=126.11 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=72.0
Q ss_pred ccCHHHHHhhhCCCCeEEEEecCCCccCCCccc---cceecCCcchhHHH---HHHHHHhcCCCeEEEEeCCCCCCcHHH
Q 032540 7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHIT---GSLHYPSDSFTDKI---FDLIQEVRGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghip---gAi~ip~~~l~~~~---~~~~~~~~~~~~iv~~c~~g~~~~~~~ 80 (138)
.++++++.+++++++.+|||||+++||+.+||| ||+|||+.++.... ..+ ..++++ +|||||.+|. |+..+
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l-~~~~~~-~Ivv~C~sG~-RS~~A 348 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHAL-SPIDGD-NVVVYCASGI-RSADF 348 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhc-cccCCC-cEEEECCCCh-hHHHH
Confidence 589999999998777899999999999999998 59999998875421 222 122444 8999999998 67666
Q ss_pred HHHHHHHHHHhhhhCCCcc-EEEeccchhh
Q 032540 81 AKRLANYLDEVKEDTGINS-IFVLERGFKG 109 (138)
Q Consensus 81 ~~~~~~~L~~~l~~~G~~~-v~~l~gG~~~ 109 (138)
+ ..|+ +.||++ |++|.||+.+
T Consensus 349 a----~~L~----~~G~~~~v~~l~GG~~~ 370 (370)
T PRK05600 349 I----EKYS----HLGHELTLHNLPGGVNA 370 (370)
T ss_pred H----HHHH----HcCCCCceEEeccccCC
Confidence 5 4443 499986 9999999863
No 54
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.1e-15 Score=107.73 Aligned_cols=115 Identities=28% Similarity=0.469 Sum_probs=82.4
Q ss_pred CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhc---CCCeEEEEeCCCC
Q 032540 4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR---GKDTLVFHCALSQ 74 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~---~~~~iv~~c~~g~ 74 (138)
.++.|+++.++.++++. .++|||+|-+-||..|||+||+||+..+....+.-...... +..-+||||.-..
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq 233 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQ 233 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeecc
Confidence 57889999999999742 46799999999999999999999987664432221111112 2356899999888
Q ss_pred CCcHHHHHHHHHHHHH----hhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540 75 VRGPTCAKRLANYLDE----VKEDTGINSIFVLERGFKGWEASGKPVC 118 (138)
Q Consensus 75 ~~~~~~~~~~~~~L~~----~l~~~G~~~v~~l~gG~~~w~~~g~p~~ 118 (138)
.|++..|+.+...-+. .-..+-|..+|+|+|||..|...-..++
T Consensus 234 ~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~LC 281 (325)
T KOG3772|consen 234 ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNLC 281 (325)
T ss_pred ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhccccc
Confidence 8999888655532111 1234567789999999999977644333
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.58 E-value=7.4e-15 Score=106.30 Aligned_cols=99 Identities=21% Similarity=0.378 Sum_probs=79.9
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCCCcHHHHHH
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQVRGPTCAKR 83 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~~~~~~~~~ 83 (138)
+.|+|+++.+++.++++++||+|..-||+-||..||++.+..+|.+...++.+. .-.+++|+.||.+|. |-..+.
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEKas-- 189 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEKAS-- 189 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eehhhH--
Confidence 569999999999999999999999999999999999999998887655544332 134579999999998 444433
Q ss_pred HHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 84 LANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
.+|.. .||++|+.|+||+-.+.+.
T Consensus 190 --~~m~~----~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 190 --AWMKE----NGFKEVYHLEGGILKYLED 213 (308)
T ss_pred --HHHHH----hcchhhhcccchHHHHhhh
Confidence 44533 8999999999999877543
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.47 E-value=5.7e-13 Score=96.05 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=85.4
Q ss_pred cccCHHHHHhhhCCCCeEEEEec---------CCCccCCCccccceecCCcchhH-------------HHHHHHHH--hc
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVR---------DDERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE--VR 61 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR---------~~~e~~~ghipgAi~ip~~~l~~-------------~~~~~~~~--~~ 61 (138)
..++++++.+.+.++..+|||.. ...||...|||||.++.++.+.. .+.+.... +.
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 34788999999988889999985 33578889999999998775421 22233222 57
Q ss_pred CCCeEEEEeC--CCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC-Ccc
Q 032540 62 GKDTLVFHCA--LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD-VPF 125 (138)
Q Consensus 62 ~~~~iv~~c~--~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~-~~~ 125 (138)
+++.+|||.+ .|...+..++ +.++ ..|+++|..|+||+..|+..|+|+..... .|.
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~----W~fr----~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~p~ 143 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVW----WTFR----VFGHTKVSLLNGGFRAWKAAGGPVDSSKVETPY 143 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHH----HHHH----HhCccEEEEecCcHHHHHHcCCccccccccCCC
Confidence 7889999998 6665555554 4443 39999999999999999999999998776 353
No 57
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.47 E-value=6.9e-14 Score=109.45 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=61.8
Q ss_pred HHHhhhCCCCeEEEEecCCCccCCCcccc----ceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHH
Q 032540 12 QLLSLKRRPNIAVIDVRDDERSYDGHITG----SLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANY 87 (138)
Q Consensus 12 ~~~~~l~~~~~~liDvR~~~e~~~ghipg----Ai~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~ 87 (138)
+..+.+. ++.+|||+|+++||+.+|||| |+|+|+..+...+.. +++++++|+||++|. ++..++ ..
T Consensus 399 ~~~~~~~-~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~----l~~~~~iivyC~~G~-rS~~aa----~~ 468 (482)
T PRK01269 399 ETVSELP-PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGD----LDQSKTYLLYCDRGV-MSRLQA----LY 468 (482)
T ss_pred HHHHhcC-CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhh----cCCCCeEEEECCCCH-HHHHHH----HH
Confidence 3444443 468999999999999999999 999999887655444 378899999999998 666665 44
Q ss_pred HHHhhhhCCCccEEEec
Q 032540 88 LDEVKEDTGINSIFVLE 104 (138)
Q Consensus 88 L~~~l~~~G~~~v~~l~ 104 (138)
|. ..||++|+++.
T Consensus 469 L~----~~G~~nv~~y~ 481 (482)
T PRK01269 469 LR----EQGFSNVKVYR 481 (482)
T ss_pred HH----HcCCccEEecC
Confidence 43 38999998775
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.36 E-value=1.2e-12 Score=96.64 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=78.5
Q ss_pred ccccCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHH-HHHHh-cCCCeEEEEeCCCCCCcHHHH
Q 032540 5 ISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD-LIQEV-RGKDTLVFHCALSQVRGPTCA 81 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~-~~~~~-~~~~~iv~~c~~g~~~~~~~~ 81 (138)
-.+|+..+++++++. ...++||||+..+|+-.|+|+|+|||+.++.....+ +...+ ....+|+++|..|+ .++.|+
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGN-dSQ~Av 394 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGN-DSQRAV 394 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCC-chHHHH
Confidence 356899999999986 578999999999999999999999999988765542 11111 23477999999999 788887
Q ss_pred HHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 82 KRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
+ .|++ ..+...|..+.||+.+|...
T Consensus 395 ~----~Lre---~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 395 R----ILRE---KFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred H----HHHh---hCCchhhhhhhhHHHHHHHh
Confidence 4 4433 34445777889999999765
No 59
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=99.07 E-value=1e-09 Score=80.48 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=78.0
Q ss_pred CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCC
Q 032540 4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQV 75 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~ 75 (138)
.+++|+++.++..+++. +++|||+|-+-||..|||.+|+||.-.+ .+..++.. +.--.-+|++|.-...
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~---~l~~~F~hkplThp~aLifHCEfSsh 316 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK---KLGLLFRHKPLTHPRALIFHCEFSSH 316 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH---HHHHHHHhccccCceeEEEEeecccc
Confidence 56889999999998732 5889999999999999999999997542 22222221 1224668999987666
Q ss_pred CcHHHHHHHHHHHHH----hhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540 76 RGPTCAKRLANYLDE----VKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (138)
Q Consensus 76 ~~~~~~~~~~~~L~~----~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (138)
|++..|..+...=+. ..-.+=|..|++|+||+..+...-..++-+
T Consensus 317 RaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~lCdP 365 (427)
T COG5105 317 RAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCDP 365 (427)
T ss_pred cchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCccccCc
Confidence 776666433332111 111234568999999999987765444443
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.98 E-value=1.4e-09 Score=78.71 Aligned_cols=85 Identities=20% Similarity=0.427 Sum_probs=61.1
Q ss_pred CCCeEEEEecCCCcc-----------CCCccccceecCCcchh---------HHHHHHHHH--hcCCCeEEEEeCCCCCC
Q 032540 19 RPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDTLVFHCALSQVR 76 (138)
Q Consensus 19 ~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~~iv~~c~~g~~~ 76 (138)
..++.+||.|...+| ..||||||+|+|+.++- +.+..++.. +..++|+|+-|+.|...
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa 249 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA 249 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence 346899999998877 45899999999987652 233333322 45679999999999833
Q ss_pred cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 77 ~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
+..+ ++ |.+.| .++.+|+|++.+|...
T Consensus 250 ~~i~---~a------l~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 250 SIIA---LA------LERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred HHHH---HH------HHhcC-CCcceecccHHHHhhc
Confidence 2222 22 23488 7999999999999753
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.95 E-value=7.8e-06 Score=59.76 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=58.8
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH------------------------------HHHHHHHHh
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------------------------KIFDLIQEV 60 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~------------------------------~~~~~~~~~ 60 (138)
++...++.+ +..+||||.+-||..|+.|+++|+|.-+=.. .+-+....+
T Consensus 6 q~~~~~~~~-~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 6 QDYRALLLA-DTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHHhc-CCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444443 5789999999999999999999999632100 001111222
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
..+.++-++|..|+.++...+.|+.. ..|+ ++--..||+.+.
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~-------~~g~-~~~r~iGGeKal 126 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGY-------AAGI-DYPRVIGGEKAL 126 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHH-------HHHh-hhhhhhchHHHH
Confidence 34466767799999888888765532 2465 444567888765
No 62
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.78 E-value=3e-05 Score=56.12 Aligned_cols=103 Identities=20% Similarity=0.200 Sum_probs=66.9
Q ss_pred ccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH-H-------HHHHHHH------hc---CCCeEEEE
Q 032540 7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-K-------IFDLIQE------VR---GKDTLVFH 69 (138)
Q Consensus 7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-~-------~~~~~~~------~~---~~~~iv~~ 69 (138)
.++.+++.+.++.++.+++|+|+ +..||.+|+|+-+.-+.. + +..++.. .+ ...++|.|
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily 80 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY 80 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence 36789999999988999999999 678999999987654321 1 1111100 01 12568888
Q ss_pred eCCCC-CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 70 CALSQ-VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 70 c~~g~-~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
+.+.. +....++......|.+.++..|+ .++.|.|||..++.+-
T Consensus 81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e~ 125 (343)
T KOG1717|consen 81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAEA 125 (343)
T ss_pred ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhhh
Confidence 87621 11122223333344456788998 7899999999987753
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.99 E-value=0.0057 Score=40.22 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=42.7
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCc----------cccc--eecCCc--chh-HHHHHHHHHh-cCCCeEEEE
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGH----------ITGS--LHYPSD--SFT-DKIFDLIQEV-RGKDTLVFH 69 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~gh----------ipgA--i~ip~~--~l~-~~~~~~~~~~-~~~~~iv~~ 69 (138)
..++++++..+.+.+=-.|||.|+..|-.... -+|. +++|.. .+. ..+..+.+.+ ..+.||++|
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~~~~pvL~H 92 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGAAEGPVLAY 92 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 45788888887665556899999987643211 0232 456543 221 1222222222 235899999
Q ss_pred eCCCCCCcHH
Q 032540 70 CALSQVRGPT 79 (138)
Q Consensus 70 c~~g~~~~~~ 79 (138)
|.+|. |+..
T Consensus 93 C~sG~-Rt~~ 101 (135)
T TIGR01244 93 CRSGT-RSSL 101 (135)
T ss_pred cCCCh-HHHH
Confidence 99998 5433
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.88 E-value=0.00025 Score=53.15 Aligned_cols=61 Identities=7% Similarity=-0.033 Sum_probs=46.4
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEe
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHC 70 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c 70 (138)
-+++++.+.+.. ...++|+|....|..+||||++|+|...+..++.++... +...++++.-
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~-~~~~~i~l~~ 76 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKAD-PRFADIRFKI 76 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhC-cCCCCceEEe
Confidence 356777777764 467999999999999999999999998888888877542 2245555543
No 65
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.86 E-value=0.0012 Score=41.94 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=33.0
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCcccc--------------ceecCCc--chh-HHHHHHHHHhc-CCCeEE
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITG--------------SLHYPSD--SFT-DKIFDLIQEVR-GKDTLV 67 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipg--------------Ai~ip~~--~l~-~~~~~~~~~~~-~~~~iv 67 (138)
..++++++.++.+.+--.||+.|+..|-. +-|. -+++|.. .+. ..+..+.+.+. ..+||+
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl 90 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVL 90 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEE
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 45899999998887766899999886521 1111 2566654 221 12223322222 347999
Q ss_pred EEeCCCC
Q 032540 68 FHCALSQ 74 (138)
Q Consensus 68 ~~c~~g~ 74 (138)
+||.+|.
T Consensus 91 ~hC~sG~ 97 (110)
T PF04273_consen 91 AHCRSGT 97 (110)
T ss_dssp EE-SCSH
T ss_pred EECCCCh
Confidence 9999998
No 66
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=96.70 E-value=0.0095 Score=46.51 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=56.1
Q ss_pred cCHHHHHhhhC--CC--CeEEEEecCCCccCCCccccceecCCcchh-------HHHHHHHH----HhcCC----CeEEE
Q 032540 8 ISGSQLLSLKR--RP--NIAVIDVRDDERSYDGHITGSLHYPSDSFT-------DKIFDLIQ----EVRGK----DTLVF 68 (138)
Q Consensus 8 i~~~~~~~~l~--~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~-------~~~~~~~~----~~~~~----~~iv~ 68 (138)
|+.-|+.+.-+ .+ ++.|||+|+.++|..||+-.|.|+...-+. ..+..+.. .+..+ ..=++
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlc 388 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLC 388 (669)
T ss_pred hhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEE
Confidence 55555554432 22 578999999999999999999998865332 22222211 11111 22344
Q ss_pred EeCCCCCCcHHHHHH-HHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 69 HCALSQVRGPTCAKR-LANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 69 ~c~~g~~~~~~~~~~-~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+-++|..-......+ ++.+| ..|-..|.++.|||....
T Consensus 389 fmGsGr~EED~YmnMviA~Fl-----QKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 389 FMGSGRDEEDNYMNMVIAMFL-----QKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred EeccCcchHHHHHHHHHHHHH-----hcCceEEEEecchHHHHH
Confidence 445553222222222 23333 245557889999998765
No 67
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.32 E-value=0.013 Score=43.99 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=49.6
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCC---Cccc-cceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD---GHIT-GSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~---ghip-gAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
..+...++.+.+...+..|||+|+..+|.. |||+ +.. -+-..|+..+......++..++|++-|.+..
T Consensus 136 tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q-psq~~fe~~L~~~l~~~~~~~~i~~e~es~~ 207 (311)
T TIGR03167 136 TGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ-PSQKRFENALAEALRRLDPGRPIFVEDESRR 207 (311)
T ss_pred CCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC-CchHHHHHHHHHHHHhCCCCceEEEEeCchh
Confidence 457778889888877789999999999988 8998 432 1223455555555445577789999998765
No 68
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.23 E-value=0.00044 Score=55.02 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=60.3
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--h--cCCCeEEEEeCCCCCCcHH
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--V--RGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~--~~~~~iv~~c~~g~~~~~~ 79 (138)
..++|+++++..+ ....++|.|...||..+|+++++|+|...-+..++++... . ..++.++++... ...
T Consensus 620 ~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~~----~K~ 692 (725)
T KOG1093|consen 620 HCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGKN----DKH 692 (725)
T ss_pred cCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEeccc----hHH
Confidence 5678888888877 4578999999999999999999999998544444444211 1 123333433322 233
Q ss_pred HHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 80 CAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
+++... .+.. +-+.+..++.+|++.
T Consensus 693 ~~e~~~-~~~~----mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 693 AAERLT-ELYV----MKVPRICILHDGFNN 717 (725)
T ss_pred HHHHhh-HHHH----hcccHHHHHHHHHhh
Confidence 343222 2222 336677888888873
No 69
>PLN02727 NAD kinase
Probab=95.40 E-value=0.15 Score=43.43 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=49.0
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccCCCcc------------ccceecCCcc---h-hHHHHHHHHHh-c-CCCeEE
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHI------------TGSLHYPSDS---F-TDKIFDLIQEV-R-GKDTLV 67 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghi------------pgAi~ip~~~---l-~~~~~~~~~~~-~-~~~~iv 67 (138)
..++++++..+.+.+=-.||+.|+..|- .+.. -.-+++|... + .+.+..+.+.+ . ..+||+
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVL 345 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIY 345 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEE
Confidence 5689999988887766689999998762 2221 1235677532 1 23444444444 2 458999
Q ss_pred EEeCCCCCCcH-HHHHHHH
Q 032540 68 FHCALSQVRGP-TCAKRLA 85 (138)
Q Consensus 68 ~~c~~g~~~~~-~~~~~~~ 85 (138)
+||.+|.+|+- ..+.|+.
T Consensus 346 vHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 346 LHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred EECCCCCchHHHHHHHHHH
Confidence 99999984443 3333443
No 70
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=0.22 Score=32.16 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred cccCHHHHHhhhCCCCeEEEEecCCCccC-------------CCccccceecCCc--ch-hHHHHHHHHHh-cCCCeEEE
Q 032540 6 SYISGSQLLSLKRRPNIAVIDVRDDERSY-------------DGHITGSLHYPSD--SF-TDKIFDLIQEV-RGKDTLVF 68 (138)
Q Consensus 6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~-------------~ghipgAi~ip~~--~l-~~~~~~~~~~~-~~~~~iv~ 68 (138)
..++++++.++-..+-..||-.|+..|-. ..-+. -.+||.. .+ ...+..+.+.+ ..+.||+.
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~~dV~~f~~Al~eaegPVla 92 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITEADVEAFQRALDEAEGPVLA 92 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCHHHHHHHHHHHHHhCCCEEe
Confidence 45899999998877666899999875521 00010 1234432 11 11222222222 34689999
Q ss_pred EeCCCCCCc
Q 032540 69 HCALSQVRG 77 (138)
Q Consensus 69 ~c~~g~~~~ 77 (138)
||.+|. |+
T Consensus 93 yCrsGt-Rs 100 (130)
T COG3453 93 YCRSGT-RS 100 (130)
T ss_pred eecCCc-hH
Confidence 999997 54
No 71
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.60 E-value=0.26 Score=33.25 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=17.9
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCccCC
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYD 35 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ 35 (138)
.+..+|.++...+.+-+=..|||.|++.|...
T Consensus 26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 26 NLSNLTEADLERLRELGIRTIIDLRSPTERER 57 (164)
T ss_dssp --TT--HHHHHHHHHTT--EEEE-S-HHHHHH
T ss_pred CcCcCCHHHHHHHHhCCCCEEEECCCcccccc
Confidence 45668888887776544357999999987644
No 72
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=92.42 E-value=0.69 Score=29.78 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=33.7
Q ss_pred CCeEEEEecCCCccCCCcccc--ceecCCcch-----hHHHH---HHHH-HhcCCCeEEEEeCCCCCCcHHH
Q 032540 20 PNIAVIDVRDDERSYDGHITG--SLHYPSDSF-----TDKIF---DLIQ-EVRGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 20 ~~~~liDvR~~~e~~~ghipg--Ai~ip~~~l-----~~~~~---~~~~-~~~~~~~iv~~c~~g~~~~~~~ 80 (138)
+=..|||+++..++...+.+| -.++|+.+. ...+. +++. ....+.+|+|+|..|..|+...
T Consensus 27 gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 27 GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHH
Confidence 335799999987752222222 344554322 12222 2222 2345689999999998666543
No 73
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=91.80 E-value=1.6 Score=28.23 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=31.6
Q ss_pred CCeEEEEecCCCccCC-CccccceecCCcc-----hhHHHH---HHHHH-hcCCCeEEEEeCCCCCCcHH
Q 032540 20 PNIAVIDVRDDERSYD-GHITGSLHYPSDS-----FTDKIF---DLIQE-VRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 20 ~~~~liDvR~~~e~~~-ghipgAi~ip~~~-----l~~~~~---~~~~~-~~~~~~iv~~c~~g~~~~~~ 79 (138)
+=..||+++...+... ..+ .-+++|..+ +...+. .++.. ...+.+|+|+|..|..|+..
T Consensus 26 gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 26 GITHVINVTNEVPNLNKKGF-TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred CCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 3347999987654311 111 224455432 222222 22222 35678999999999756544
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=87.37 E-value=2.8 Score=26.78 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=16.6
Q ss_pred hcCCCeEEEEeCCCCCCcHHH
Q 032540 60 VRGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~ 80 (138)
..++.+|+|+|..|..|+...
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v 90 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAV 90 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHH
T ss_pred hcccceeEEEeCCCcccchHH
Confidence 457789999999998666554
No 75
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=84.77 E-value=5.9 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHHHhc---CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 53 IFDLIQEVR---GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 53 ~~~~~~~~~---~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
+..+.+.+| ++..+|+.|.+....+..+.. .|...|.+.||++|++-
T Consensus 124 v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~Ya----cLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 124 VEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYA----CLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHhcCCcCcCeEEEEEecCCCccHHHHHH----HHHHHHHhcCCCceEEE
Confidence 444444445 777889999876544444443 33344456999988754
No 76
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=83.35 E-value=3.6 Score=31.47 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=38.7
Q ss_pred cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceec--CCc-chhHHHHHHHHHhcCCCeEEEEeCC
Q 032540 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHY--PSD-SFTDKIFDLIQEVRGKDTLVFHCAL 72 (138)
Q Consensus 8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~i--p~~-~l~~~~~~~~~~~~~~~~iv~~c~~ 72 (138)
..-.+++..+...+..+||+|...+|.. ..-|.+.. |-. .|+..+...+..++...+|+|=|.|
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehrG-S~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es 218 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHRG-SSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDES 218 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhcc-ccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 3445677777666678999999999864 23344333 322 4555555554444555666666655
No 77
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=82.79 E-value=3.1 Score=28.61 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHhcCCCeEEEEeCCCCCCcHH
Q 032540 58 QEVRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 58 ~~~~~~~~iv~~c~~g~~~~~~ 79 (138)
....++.+|+|+|..|..|+..
T Consensus 100 ~~~~~g~kVvVHC~~GigRSgt 121 (180)
T COG2453 100 EALSKGKKVVVHCQGGIGRSGT 121 (180)
T ss_pred HHHhcCCeEEEEcCCCCchHHH
Confidence 3346777999999999866643
No 78
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=81.88 E-value=6.5 Score=23.46 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
.|+++|++|...+..... .+++.++..|.. +.+-..++...
T Consensus 2 kilvvCg~G~gtS~ml~~----ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 2 KIVFACDAGMGSSAMGAS----VLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred EEEEECCCCccHHHHHHH----HHHHHHHHCCCc-eEEEEcchhhC
Confidence 589999999855544443 444444557763 33444445444
No 79
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=81.48 E-value=2.9 Score=27.13 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
|+|+|.+..-||+.|...+..++.+ .+-.++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~----~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQ----RLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH----THTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccc----cccCCcEEEEEeeccc
Confidence 6899988777887776444444322 2335788899999877
No 80
>PRK12361 hypothetical protein; Provisional
Probab=80.45 E-value=8.7 Score=31.11 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=16.4
Q ss_pred hcCCCeEEEEeCCCCCCcHHH
Q 032540 60 VRGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~ 80 (138)
...+.+|+|+|..|..||...
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~v 192 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLV 192 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHH
Confidence 346789999999998777553
No 81
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=80.30 E-value=3.1 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEecc
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLER 105 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~g 105 (138)
+|++.|.+|...+..++ ..+++.+++.|++ +....+
T Consensus 1 kIlvvC~~Gi~TS~~~~----~~i~~~~~~~gi~-~~~~~~ 36 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVA----NKIKKALKELGIE-VEVSAG 36 (90)
T ss_dssp EEEEEESSSSHHHHHHH----HHHHHHHHHTTEC-EEEEEE
T ss_pred CEEEECCChHHHHHHHH----HHHHHHHHhccCc-eEEEEe
Confidence 48999999985444444 4555556679974 443333
No 82
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=79.63 E-value=4.8 Score=27.26 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (138)
Q Consensus 52 ~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~ 83 (138)
.+-.+.+.+|...+++++|-.|..||..++.-
T Consensus 82 ~i~DF~~~wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 82 AIIDFADEWPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred HHHHHHhcCccccceeeeeccccccchHHHHH
Confidence 45566777899999999999999888776643
No 83
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=79.54 E-value=7.7 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.|++.|++|...|..++..+. +.|++.|+ ++.+....+....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~----~~l~~~gi-~~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIK----ELCQSHNI-PVELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHH----HHHHHCCC-eEEEEEecHHHHh
Confidence 589999999855544444444 44455898 4555555555543
No 84
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=79.49 E-value=8.2 Score=29.02 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=43.0
Q ss_pred HHHHHhhhCCCCeEEEEecCCCccCCCcc-ccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHH
Q 032540 10 GSQLLSLKRRPNIAVIDVRDDERSYDGHI-TGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYL 88 (138)
Q Consensus 10 ~~~~~~~l~~~~~~liDvR~~~e~~~ghi-pgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L 88 (138)
-.++.++.+..+..|+|+|.+ .+.. ++ .|.+. . -+.++|+.+.++...+.... +..|
T Consensus 76 dpel~~~A~~~g~~i~DvR~p-~~~~-~~~~g~~~-----------~------~~~~rv~~vGTDcavGK~tT---al~L 133 (301)
T PF07755_consen 76 DPELAAAAKKNGVRIIDVRKP-PKDL-PVASGRIR-----------E------VKAKRVLTVGTDCAVGKMTT---ALEL 133 (301)
T ss_dssp HHHHHCCHHCCT--EEETTS---SS------SGGG-----------G-------SSEEEEEEESSSSSSHHHH---HHHH
T ss_pred CHHHHHHHHHcCCeEeeccCC-Cccc-ccccCccc-----------c------CCCCEEEEEccCccccHHHH---HHHH
Confidence 345666655667899999998 3332 22 11111 1 23567777766554443322 2456
Q ss_pred HHhhhhCCCccEEEeccchhhhhhC--CCCccc
Q 032540 89 DEVKEDTGINSIFVLERGFKGWEAS--GKPVCR 119 (138)
Q Consensus 89 ~~~l~~~G~~~v~~l~gG~~~w~~~--g~p~~~ 119 (138)
.++|++.|+ +..++--|-.+|..+ |+++..
T Consensus 134 ~~~l~~~G~-~a~fvaTGQTGimia~~Gv~iDa 165 (301)
T PF07755_consen 134 RRALRERGI-NAGFVATGQTGIMIAGYGVPIDA 165 (301)
T ss_dssp HHHHHHTT---EEEEE-SHHHHHCHSEC--GGG
T ss_pred HHHHHHcCC-CceEEecCCceEEEecCCeeccc
Confidence 667788999 566566677777554 455544
No 85
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.46 E-value=7.7 Score=23.77 Aligned_cols=42 Identities=10% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
..+|++.|++|. .+...+. .+.+.+++.|+ ++.+-..++...
T Consensus 3 ~~~ILl~C~~G~-sSS~l~~----k~~~~~~~~gi-~~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGM-STSLLVN----KMNKAAEEYGV-PVKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCch-hHHHHHH----HHHHHHHHCCC-cEEEEEecHHHH
Confidence 467999999997 4434443 44444456888 455555555544
No 86
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=79.27 E-value=3.9 Score=31.86 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
+.|++.|+.|..++.-.+ ..|++.+++.|.+++.+..--++..
T Consensus 379 ~~iifaCDAGMGSSAMGA----silrkk~k~agl~~I~V~n~AIn~L 421 (472)
T COG2213 379 KKIIFACDAGMGSSAMGA----SILRKKLKNAGLNDISVTNYAINNL 421 (472)
T ss_pred eEEEEEEcCCCChhhhhH----HHHHHHHHhCCCCceeEeehhhhcC
Confidence 579999999987776665 5677777889998888776555544
No 87
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=76.46 E-value=12 Score=23.30 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=26.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+|++.|.+|. ++...+..+...+ ++.|. ++.+...+.....
T Consensus 2 ~Ill~C~~Ga-SSs~la~km~~~a----~~~gi-~~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGG-TSGLLANALNKGA----KERGV-PLEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCC-CHHHHHHHHHHHH----HHCCC-cEEEEEeeHHHHH
Confidence 4889998874 6666665555444 55898 5666666655543
No 88
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.47 E-value=2.5 Score=32.13 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=28.0
Q ss_pred ccccCHHHHHhhhC------CCCeEEEEecCCCccCCCcccc
Q 032540 5 ISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITG 40 (138)
Q Consensus 5 ~~~i~~~~~~~~l~------~~~~~liDvR~~~e~~~ghipg 40 (138)
...++++++.+.++ +.+.++||+|++. |+-.++|+
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 45689999998873 3468899999988 98888874
No 89
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.63 E-value=7.5 Score=30.43 Aligned_cols=48 Identities=10% Similarity=-0.042 Sum_probs=32.1
Q ss_pred eEEEEeCCCCCC-cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 65 TLVFHCALSQVR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 65 ~iv~~c~~g~~~-~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
++.+||+-.... +......+.-...+.|++.|+ ++.+|-||+.+|...
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh-~~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGH-KPIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCC-eEEEEecccceecCC
Confidence 899999765533 333333332222235788999 799999999999754
No 90
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=73.38 E-value=28 Score=24.13 Aligned_cols=73 Identities=10% Similarity=0.307 Sum_probs=36.7
Q ss_pred CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh---cCCCeEEEEeCCC----CCCc--HHHHHHHHHHHH-
Q 032540 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV---RGKDTLVFHCALS----QVRG--PTCAKRLANYLD- 89 (138)
Q Consensus 20 ~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~---~~~~~iv~~c~~g----~~~~--~~~~~~~~~~L~- 89 (138)
.++.+||+-+. .....+...+..+.+.+ -+++|||+...-. .... ......+...++
T Consensus 60 a~~~~ld~~~N-------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~ 126 (178)
T PF14606_consen 60 ADLIVLDCGPN-------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALRE 126 (178)
T ss_dssp -SEEEEEESHH-------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHH
T ss_pred CCEEEEEeecC-------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHH
Confidence 47889998664 45556777666665554 3468888877321 1010 000111112222
Q ss_pred --HhhhhCCCccEEEecc
Q 032540 90 --EVKEDTGINSIFVLER 105 (138)
Q Consensus 90 --~~l~~~G~~~v~~l~g 105 (138)
+.|++.|.+|+++++|
T Consensus 127 ~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 127 AVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHcCCCcEEEeCc
Confidence 2455679999999986
No 91
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=73.21 E-value=9.5 Score=25.71 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCeEEEEeCCCCC-CcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 54 FDLIQEVRGKDTLVFHCALSQV-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 54 ~~~~~~~~~~~~iv~~c~~g~~-~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
..+...++++..+|+.+..|.. .|...+.++.. ....|..++..+.||-.++.
T Consensus 58 ~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~-----~~~~g~~~i~F~IGG~~G~~ 111 (155)
T PF02590_consen 58 ERILKKIPPNDYVILLDERGKQLSSEEFAKKLER-----WMNQGKSDIVFIIGGADGLS 111 (155)
T ss_dssp HHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHH-----HHHTTS-EEEEEE-BTTB--
T ss_pred HHHHhhccCCCEEEEEcCCCccCChHHHHHHHHH-----HHhcCCceEEEEEecCCCCC
Confidence 3444445778888998988863 33333333332 23468889999999877653
No 92
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=72.95 E-value=8 Score=23.77 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
.+|++.|++|...|......+-..| +++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l----~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVL----KELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHH----HHcCCC
Confidence 4689999999866666654444444 559995
No 93
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=72.89 E-value=4.1 Score=27.42 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
++..+++++-.|..........++..| +.+|..+...|+||-..
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l----~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLL----KSLGCVDAINLDGGGSS 142 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHH----HHHT-SEEEE---GGG-
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHH----HHcCcCeEEEecCCcce
Confidence 444566665433111111223344445 44899999999998764
No 94
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=72.67 E-value=11 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=15.8
Q ss_pred hcCCCeEEEEeCCCCCCcHH
Q 032540 60 VRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~ 79 (138)
+..+.+|+|+|..|..|+..
T Consensus 167 l~~g~~VaVHC~AGlGRTGt 186 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPV 186 (241)
T ss_pred HhcCCeEEEECCCCCCHHHH
Confidence 45678999999999867654
No 95
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.48 E-value=17 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=25.6
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch------hhhhhCCC
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF------KGWEASGK 115 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~------~~w~~~g~ 115 (138)
+..+|++|.... .....+..+.. .|++.|..++.++-||- ..|.+.|+
T Consensus 50 ~~d~V~iS~~~~-~~~~~~~~~~~----~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 50 DVDVIGLSSLSG-GHMTLFPEVIE----LLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred CCCEEEEcccch-hhHHHHHHHHH----HHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 345777776543 22222222333 34557777777777762 23555664
No 96
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=72.09 E-value=10 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540 52 KIFDLIQEVRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 52 ~~~~~~~~~~~~~~iv~~c~~g~~~~~~ 79 (138)
.+.++...+..+++|+++|.+|-.|+-.
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGl 149 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGL 149 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHH
Confidence 3445555567889999999998766544
No 97
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=72.02 E-value=15 Score=23.27 Aligned_cols=26 Identities=8% Similarity=0.354 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHhcCCCeEEEEeCC
Q 032540 47 DSFTDKIFDLIQEVRGKDTLVFHCAL 72 (138)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~iv~~c~~ 72 (138)
+++.+++....+.++.++.+++.++-
T Consensus 42 ~~~~~~l~~~i~~~~~~~~vivltDl 67 (116)
T TIGR00824 42 ETLQEKYNAALADLDTEEEVLFLVDI 67 (116)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 34666677777767777778877765
No 98
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=71.84 E-value=14 Score=23.19 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=24.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
+|++.|++|. ++...+. .+++.++..|+ ++.+-..+....
T Consensus 3 kILlvCg~G~-STSlla~----k~k~~~~e~gi-~~~i~a~~~~e~ 42 (104)
T PRK09590 3 KALIICAAGM-SSSMMAK----KTTEYLKEQGK-DIEVDAITATEG 42 (104)
T ss_pred EEEEECCCch-HHHHHHH----HHHHHHHHCCC-ceEEEEecHHHH
Confidence 5899999998 4444443 44444556888 455544444443
No 99
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=71.45 E-value=9 Score=26.00 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=12.8
Q ss_pred cCCCeEEEEeCCCCCCcHHH
Q 032540 61 RGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~ 80 (138)
+...||+++|..|..|....
T Consensus 89 ~~n~PvLiHC~~G~~rTG~v 108 (164)
T PF03162_consen 89 PRNYPVLIHCNHGKDRTGLV 108 (164)
T ss_dssp GGG-SEEEE-SSSSSHHHHH
T ss_pred CCCCCEEEEeCCCCcchhhH
Confidence 35689999999987554433
No 100
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=70.94 E-value=18 Score=22.68 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 48 SFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
++...+.+..+.++.+..++++|+-+.
T Consensus 42 ~~~~~l~~~i~~~~~~~~vlil~Dl~g 68 (116)
T PF03610_consen 42 DFEEKLEEAIEELDEGDGVLILTDLGG 68 (116)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEESSTT
T ss_pred HHHHHHHHHHHhccCCCcEEEEeeCCC
Confidence 344556666666677889999998876
No 101
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=69.97 E-value=14 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=20.6
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
+...+|+++|..|+ .+..+ -.++++|. ..|++ |.+
T Consensus 23 ~~~~~v~il~G~Gn-NGgDg-l~~AR~L~----~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDG-LVAARHLA----NRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHH-HHHHHHHH----HTTCE-EEE
T ss_pred cCCCeEEEEECCCC-ChHHH-HHHHHHHH----HCCCe-EEE
Confidence 67789999999887 44332 13334554 48994 654
No 102
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=68.88 E-value=9.1 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=13.8
Q ss_pred CCCeEEEEeCCCCCCcHH
Q 032540 62 GKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~ 79 (138)
...+|+|+|..|..|+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 367999999998856543
No 103
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=68.88 E-value=9.1 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=13.8
Q ss_pred CCCeEEEEeCCCCCCcHH
Q 032540 62 GKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~ 79 (138)
...+|+|+|..|..|+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 367999999998856543
No 104
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=67.24 E-value=31 Score=24.45 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=21.8
Q ss_pred hcC--CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 60 VRG--KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 60 ~~~--~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
++. ..+|+++|..|+.-+.. ...++.|. ..|+ .|.++
T Consensus 44 ~~~~~~~~v~vlcG~GnNGGDG--~VaAR~L~----~~G~-~V~v~ 82 (203)
T COG0062 44 YPLGRARRVLVLCGPGNNGGDG--LVAARHLK----AAGY-AVTVL 82 (203)
T ss_pred cCcccCCEEEEEECCCCccHHH--HHHHHHHH----hCCC-ceEEE
Confidence 455 56899999998833322 12334553 4897 45433
No 105
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=66.37 E-value=19 Score=21.94 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
+|++.|++|...+ ..+ ..+.+.+++.|+ ++.+-..++...
T Consensus 1 kIl~~Cg~G~sTS-~~~----~ki~~~~~~~~~-~~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTS-ILV----KKMKKAAEKRGI-DAEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHH-HHH----HHHHHHHHHCCC-ceEEEEecHHHH
Confidence 3789999998433 344 344445566888 455555555544
No 106
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=66.13 E-value=34 Score=24.00 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=22.0
Q ss_pred hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
+++.++|+++|..|+.-+... .++++|.. .|+ .|+++
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGl--v~AR~L~~----~~v-~V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGF--VVARHLKG----FGV-EVFLL 78 (205)
T ss_pred cCCCCeEEEEECCCCCccHHH--HHHHHHHh----CCC-EEEEE
Confidence 455678999999887333221 23344432 676 56665
No 107
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=65.36 E-value=18 Score=28.85 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=40.8
Q ss_pred CCCeEEEEecCC--CccCCCccccceecCCcchh------------HHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540 19 RPNIAVIDVRDD--ERSYDGHITGSLHYPSDSFT------------DKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL 84 (138)
Q Consensus 19 ~~~~~liDvR~~--~e~~~ghipgAi~ip~~~l~------------~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~ 84 (138)
++..++||+-.. .......||-+..+|-+.+. ..+....+.+.-.++-|+||+.|.-.+..+.+.+
T Consensus 240 RPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL 319 (675)
T KOG4166|consen 240 RPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLL 319 (675)
T ss_pred CCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHH
Confidence 456899998653 23445666777666653221 2344444444555566899999886666666544
Q ss_pred HH
Q 032540 85 AN 86 (138)
Q Consensus 85 ~~ 86 (138)
..
T Consensus 320 ~~ 321 (675)
T KOG4166|consen 320 GR 321 (675)
T ss_pred HH
Confidence 43
No 108
>PRK10565 putative carbohydrate kinase; Provisional
Probab=64.92 E-value=27 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=22.4
Q ss_pred hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
++...+|+|+|..|+ .+-.+ .-++++|.. .|| +|.++
T Consensus 57 ~~~~~~v~vl~G~GN-NGGDG-~v~AR~L~~----~G~-~V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGN-NGGDG-YVVARLAQA----AGI-DVTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCC-chHHH-HHHHHHHHH----CCC-ceEEE
Confidence 445567999999987 44332 233445543 898 55544
No 109
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=64.68 E-value=15 Score=21.58 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=18.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
+++.|++|...+.... ..|++.+...|+.
T Consensus 2 ilvvC~~G~~tS~ll~----~kl~~~f~~~~i~ 30 (86)
T cd05563 2 ILAVCGSGLGSSLMLK----MNVEKVLKELGIE 30 (86)
T ss_pred EEEECCCCccHHHHHH----HHHHHHHHHCCCc
Confidence 7899999885444444 4454445568874
No 110
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=64.47 E-value=16 Score=20.69 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=18.3
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
+++.|++|...+.... ..|++.+...++.
T Consensus 2 il~vc~~G~~~s~~l~----~~l~~~~~~~~~~ 30 (84)
T cd00133 2 ILVVCGSGIGSSSMLA----EKLEKAAKELGIE 30 (84)
T ss_pred EEEECCCcHhHHHHHH----HHHHHHHHHCCCe
Confidence 7899998864444444 4455445568874
No 111
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=63.79 E-value=22 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=20.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
.+|+++|..|+ .+-.+ .-++++|.. .|| +|.++
T Consensus 61 ~~V~VlcG~GN-NGGDG-lv~AR~L~~----~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGN-NGGDG-LVAARHLAH----FGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCC-CchhH-HHHHHHHHH----CCC-eEEEE
Confidence 67999999887 33222 123345543 898 56544
No 112
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=24 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=19.4
Q ss_pred HHHHHhhhhCCCccEEEec-cchhhhhhC
Q 032540 86 NYLDEVKEDTGINSIFVLE-RGFKGWEAS 113 (138)
Q Consensus 86 ~~L~~~l~~~G~~~v~~l~-gG~~~w~~~ 113 (138)
+.-++.|+.+||.||.+.. .|..+|.+.
T Consensus 108 ~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 108 EQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 3334457789999987555 578888664
No 113
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=63.45 E-value=31 Score=24.33 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=33.4
Q ss_pred ccCHHHHHhhhC--CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 7 YISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 7 ~i~~~~~~~~l~--~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
.-++++|++... .+.++|+|+|-+.. .--++...+... ....||||..+.|.
T Consensus 34 ~~s~~~fL~~~~~~~pGclllDvrMPg~------------sGlelq~~L~~~----~~~~PVIfiTGhgD 87 (202)
T COG4566 34 FASAEEFLAAAPLDRPGCLLLDVRMPGM------------SGLELQDRLAER----GIRLPVIFLTGHGD 87 (202)
T ss_pred ecCHHHHHhhccCCCCCeEEEecCCCCC------------chHHHHHHHHhc----CCCCCEEEEeCCCC
Confidence 456777777642 45799999997643 111233334333 56788999998776
No 114
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=62.38 E-value=17 Score=21.52 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
.++++|.+|...+.... ..+++.+.+.++.
T Consensus 2 ~ilivC~~G~~tS~~l~----~~i~~~~~~~~i~ 31 (89)
T cd05566 2 KILVACGTGVATSTVVA----SKVKELLKENGID 31 (89)
T ss_pred EEEEECCCCccHHHHHH----HHHHHHHHHCCCc
Confidence 58999999984443444 4455445568873
No 115
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=60.69 E-value=14 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.444 Sum_probs=22.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
|+|+|....-||+.|...+. + ..+ .++.+...|..+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~----~---~~~-~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFK----A---IVG-DRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHH----H---hcC-CCEEEEcCcccCC
Confidence 57888776667777653332 2 123 2577778887766
No 116
>PLN02645 phosphoglycolate phosphatase
Probab=60.68 E-value=68 Score=23.93 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCCccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 2 ARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 2 a~~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+...+..+.+++.+++.+-+.+++|+------...-+||+ .+.+..+. ..+.++++..+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~~ga--------~e~l~~lr---~~g~~~~~~TN~~~ 71 (311)
T PLN02645 10 AAAAQLLTLENADELIDSVETFIFDCDGVIWKGDKLIEGV--------PETLDMLR---SMGKKLVFVTNNST 71 (311)
T ss_pred ccccccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccCcCH--------HHHHHHHH---HCCCEEEEEeCCCC
Confidence 3455667778888888766789999865432222224444 23344443 35667777666553
No 117
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=60.35 E-value=37 Score=27.12 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=20.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
++|+|+|+.|+ .+-.+ .-++++|.. .|| +|.++
T Consensus 60 ~~VlVlcG~GN-NGGDG-lv~AR~L~~----~G~-~V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGN-NGGDG-LVAARHLHH----FGY-KPSIC 92 (462)
T ss_pred CEEEEEECCCC-CHHHH-HHHHHHHHH----CCC-ceEEE
Confidence 67999999998 44322 123345543 899 45543
No 118
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=59.24 E-value=29 Score=25.74 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
-+|-+=|.+|..||...++.++.+|+. .|.-+|.+
T Consensus 244 lTIaIGCTGGqHRSV~iae~La~~l~~----~~~~~v~v 278 (286)
T COG1660 244 LTIAIGCTGGQHRSVYIAEQLAEYLRA----RGKYNVQV 278 (286)
T ss_pred EEEEEccCCCccchHHHHHHHHHHHHh----ccCceEEE
Confidence 357788999999999888888877754 66545654
No 119
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=58.79 E-value=28 Score=24.58 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
.-.++++||.++......-....+..|.+.|...| ..++.||..+
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g---~~V~tGG~~G 57 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARELGRELAKRG---LLVITGGGPG 57 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC---cEEEeCCchh
Confidence 34778999987632222212223333433344477 4567777644
No 120
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=57.75 E-value=39 Score=25.28 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=25.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
-.|-+=|.+|..||...++.++..|++ .|+.
T Consensus 243 ltIaiGCTGG~HRSV~iae~La~~L~~----~~~~ 273 (284)
T PF03668_consen 243 LTIAIGCTGGQHRSVAIAERLAERLRE----KGYT 273 (284)
T ss_pred EEEEEEcCCCcCcHHHHHHHHHHHHHh----cCCc
Confidence 368888999999999999888887765 7873
No 121
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=57.14 E-value=12 Score=24.94 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=15.9
Q ss_pred HHHHHhcCCCeEEEEeCCCCCCcHHH
Q 032540 55 DLIQEVRGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 55 ~~~~~~~~~~~iv~~c~~g~~~~~~~ 80 (138)
.+...++++..++|.|+.|..|...+
T Consensus 116 ~~v~~~p~~~~l~fhC~~G~GRTTt~ 141 (149)
T PF14566_consen 116 NFVKSLPKDTWLHFHCQAGRGRTTTF 141 (149)
T ss_dssp HHHHTS-TT-EEEEE-SSSSHHHHHH
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 34445688899999999997554433
No 122
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=56.70 E-value=59 Score=21.96 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 53 ~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
-..+.+.++++.-+|+.|..|..-+. ..++..|.+ ....|..++.++.||-.++.+
T Consensus 57 ~~~il~~l~~~~~~i~LDe~Gk~~sS---~~fA~~l~~-~~~~g~~~i~F~IGGa~G~~~ 112 (157)
T PRK00103 57 GERILAALPKGARVIALDERGKQLSS---EEFAQELER-WRDDGRSDVAFVIGGADGLSP 112 (157)
T ss_pred HHHHHhhCCCCCEEEEEcCCCCcCCH---HHHHHHHHH-HHhcCCccEEEEEcCccccCH
Confidence 33444455667778888888863332 223344432 234566689999998766633
No 123
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=55.85 E-value=48 Score=27.17 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=20.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
.+|+|+|+.|+ .+-.+. -+++.|. ..|| +|.++
T Consensus 136 ~~VlVlcGpGN-NGGDGL-VaAR~L~----~~G~-~V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGN-NGGDGL-VAARHLH----HFGY-KPFVC 168 (544)
T ss_pred CEEEEEECCCc-CHHHHH-HHHHHHH----HCCC-ceEEE
Confidence 67999999998 443221 2334453 3899 56544
No 124
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.63 E-value=27 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.2
Q ss_pred CccccCHHHHHhhhCCCCeEEEEecCCCc
Q 032540 4 SISYISGSQLLSLKRRPNIAVIDVRDDER 32 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e 32 (138)
-+..|+.+|..+.+.. ..-||||.++.|
T Consensus 4 LvSPin~eEA~eAieG-GAdIiDVKNP~E 31 (235)
T COG1891 4 LVSPINREEAIEAIEG-GADIIDVKNPAE 31 (235)
T ss_pred eeccCCHHHHHHHhhC-CCceEeccCccc
Confidence 4567899999998875 478999999987
No 125
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=54.31 E-value=13 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.0
Q ss_pred CHHHHHhhhCCCCe-EEEEecCCC
Q 032540 9 SGSQLLSLKRRPNI-AVIDVRDDE 31 (138)
Q Consensus 9 ~~~~~~~~l~~~~~-~liDvR~~~ 31 (138)
+.+++.+.+...++ +|||||...
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCC
Confidence 35677777764444 899999754
No 126
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.22 E-value=45 Score=21.69 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccc------hhhhhhCCC
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG------FKGWEASGK 115 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG------~~~w~~~g~ 115 (138)
.+-.+|++|..-. ........+.. .|++.|..++.++-|| +..|.+.|.
T Consensus 52 ~~adii~iSsl~~-~~~~~~~~~~~----~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 52 ADVHVVGVSSLAG-GHLTLVPALRK----ELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred cCCCEEEEcCchh-hhHHHHHHHHH----HHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 4456777775432 22222222332 3445676667777776 234555554
No 127
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=54.03 E-value=30 Score=23.43 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.1
Q ss_pred cCCCeEEEEeCCCCCCcHH
Q 032540 61 RGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~ 79 (138)
..+.+|+|+|..|..|+..
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 4578999999999866644
No 128
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=53.05 E-value=42 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
.++.+++ +.|+ +|.++-.....|.++.
T Consensus 309 TiAEYfR----D~G~-~Vllm~DS~sR~AeAl 335 (578)
T TIGR01043 309 TIAEYFR----DMGY-DVALMADSTSRWAEAM 335 (578)
T ss_pred HHHHHHH----HCCC-CEEEEecChhHHHHHH
Confidence 4555554 5998 8988888999997764
No 129
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=53.00 E-value=45 Score=26.24 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=31.2
Q ss_pred cCCCeEEEEeCCCCCC-cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~-~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
..+.++.+||+-.... +......+.-.....|++.|+ +++++-||+.++.
T Consensus 29 ~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~-~~~~ligd~ta~i 79 (410)
T PRK13354 29 KEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGH-RPVILIGGFTGKI 79 (410)
T ss_pred hcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCC-eEEEEEccccccc
Confidence 3567899999766533 233333222222224677998 6888999988864
No 130
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=52.66 E-value=32 Score=22.29 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=23.9
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
.|+|+|....-||+.|...+...+ .+ .++.+...|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~------~~-~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLA------PK-LDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHh------hh-CCEEEECCCCCCc
Confidence 588999877667777764333222 11 2566777777654
No 131
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=51.10 E-value=36 Score=20.78 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=21.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
+|+-|.+|...+..++ ..|++.+++.|++ +.+-
T Consensus 3 ~i~ac~~G~a~s~laa----~~L~~aa~~~g~~-~~ve 35 (96)
T cd05569 3 AVTACPTGIAHTYMAA----EALEKAAKKLGWE-IKVE 35 (96)
T ss_pred EEEECCCchhHHHHHH----HHHHHHHHHCCCe-EEEE
Confidence 5788988875555555 5555566779994 5433
No 132
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=49.49 E-value=24 Score=20.13 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=22.6
Q ss_pred ccccCHHHHHhhhCCC-CeEEEEecCCCc
Q 032540 5 ISYISGSQLLSLKRRP-NIAVIDVRDDER 32 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~~-~~~liDvR~~~e 32 (138)
-..|+-+++.+++..+ ++.++|..+-++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3568999999998754 688999998665
No 133
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=49.37 E-value=97 Score=22.28 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=30.2
Q ss_pred EEEeCCCCCCcH--HHHHHHHHHHHHhhhhCCCcc-EE-----Eeccc--hhhhhhCCCCccc
Q 032540 67 VFHCALSQVRGP--TCAKRLANYLDEVKEDTGINS-IF-----VLERG--FKGWEASGKPVCR 119 (138)
Q Consensus 67 v~~c~~g~~~~~--~~~~~~~~~L~~~l~~~G~~~-v~-----~l~gG--~~~w~~~g~p~~~ 119 (138)
++++.||.+++. ..+...+..|..+|...|.+. |. ...|| ...|.++|.|-..
T Consensus 17 lLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~p 79 (219)
T PF11775_consen 17 LLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYP 79 (219)
T ss_pred EEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCC
Confidence 566777766663 222223345666677788752 21 22455 4679888877444
No 134
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=47.85 E-value=41 Score=23.84 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=22.7
Q ss_pred CCeEEEEeCCCCCCcHHHHH---HHHHHHHHhhhhCCC
Q 032540 63 KDTLVFHCALSQVRGPTCAK---RLANYLDEVKEDTGI 97 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~---~~~~~L~~~l~~~G~ 97 (138)
.+++|++|..|. |...|+. .++..|.+.+...|.
T Consensus 131 ~~~~iLVCtHg~-RD~rCg~~Gp~l~~~l~~~~~~~~l 167 (230)
T PF06999_consen 131 DKPLILVCTHGK-RDKRCGILGPPLARELEKELRERGL 167 (230)
T ss_pred CCCEEEEcCCCC-cCCchhcccHHHHHHHHHHhhhcCC
Confidence 478999999887 5655553 455556555566663
No 135
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=47.39 E-value=36 Score=22.40 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=22.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
+.|+|+|....-||+.|...+. + .. .++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~----~----~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLR----K----RL-PGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHH----H----hc-CCeEEEcccccCC
Confidence 4689999766657766653322 2 21 1355677777665
No 136
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=46.65 E-value=39 Score=26.83 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=32.9
Q ss_pred ccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch
Q 032540 37 HITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (138)
Q Consensus 37 hipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~ 107 (138)
-||||.-+--..+.+.+... .+..+|+|..+|. |+..-+ ..| ..|..+...-+|-
T Consensus 249 aIPGAFGCGKTVISQsLSKY-----SNSD~iiYVGCGE-RGNEMs----EVL------~dFPeLt~ev~G~ 303 (618)
T KOG1352|consen 249 AIPGAFGCGKTVISQSLSKY-----SNSDAIIYVGCGE-RGNEMS----EVL------MDFPELTMEVDGK 303 (618)
T ss_pred ccCcccccchHHHHHHHhhc-----cCCCeEEEEcccc-cchhHH----HHH------HhChhhEEecCCc
Confidence 46777666555555555544 3466888888888 554433 455 4566666544553
No 137
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=44.93 E-value=56 Score=25.52 Aligned_cols=44 Identities=20% Similarity=0.128 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
....-|++|++|. .+..++-+++.. ..|-+++..++|+|.+|..
T Consensus 101 ~~~~~v~f~~SGs-eA~e~AlklAr~------~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 101 GGLDCFFFSNSGA-EAIEGALKLAKH------VTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred CCCCEEEEeCcHH-HHHHHHHHHHHH------hcCCCeEEEECCCcCCcCH
Confidence 4445688888876 344444334422 2466678889999988754
No 138
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=43.96 E-value=67 Score=24.94 Aligned_cols=48 Identities=6% Similarity=-0.018 Sum_probs=29.8
Q ss_pred eEEEEeCCCCCC-cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 65 TLVFHCALSQVR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 65 ~iv~~c~~g~~~-~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
++.+||+-.... +......+.-.....|++.|+ ++.++-||+.++...
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~-~~~iligd~ta~igd 78 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGH-EVIVLLGDATALIGD 78 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEeccchhhcC
Confidence 678999765533 333443332221234677998 688888999888653
No 139
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=43.53 E-value=40 Score=21.52 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=7.5
Q ss_pred eEEEEeCCCCCCcHHH
Q 032540 65 TLVFHCALSQVRGPTC 80 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~ 80 (138)
.|+|+|....-||+.|
T Consensus 2 ~vlfvC~~N~cRS~mA 17 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMA 17 (126)
T ss_pred eEEEEcCCcHHHHHHH
Confidence 3555665433344443
No 140
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.18 E-value=93 Score=20.35 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=20.2
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
...|++.|-.|. ........++.+| +..|| +|.+|
T Consensus 3 ~~~vl~~~~~gD-~H~lG~~iv~~~l----r~~G~-eVi~L 37 (137)
T PRK02261 3 KKTVVLGVIGAD-CHAVGNKILDRAL----TEAGF-EVINL 37 (137)
T ss_pred CCEEEEEeCCCC-hhHHHHHHHHHHH----HHCCC-EEEEC
Confidence 356788887766 4444444444444 44888 45444
No 141
>PRK05922 type III secretion system ATPase; Validated
Probab=42.17 E-value=83 Score=25.05 Aligned_cols=52 Identities=17% Similarity=0.361 Sum_probs=30.8
Q ss_pred cCCCeEEEEeCCCC-----CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540 61 RGKDTLVFHCALSQ-----VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (138)
Q Consensus 61 ~~~~~iv~~c~~g~-----~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (138)
..++.++|+..+.. .++..++..++.+++. .|. +|.++-..+..|..+..++
T Consensus 210 ~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd----~G~-~VLl~~DslTR~A~A~REi 266 (434)
T PRK05922 210 AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRD----QGH-RVLFIMDSLSRWIAALQEV 266 (434)
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCC-CEEEeccchhHHHHHHHHH
Confidence 34455656554432 1222334455666654 896 8988888999987764433
No 142
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=42.01 E-value=65 Score=22.63 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=15.8
Q ss_pred HHHHHHhhhhCCCccEEEeccc
Q 032540 85 ANYLDEVKEDTGINSIFVLERG 106 (138)
Q Consensus 85 ~~~L~~~l~~~G~~~v~~l~gG 106 (138)
+..|.+.|...|+ ++++|+|.
T Consensus 40 A~ale~~L~~~G~-~~y~LDGD 60 (197)
T COG0529 40 ANALEEKLFAKGY-HVYLLDGD 60 (197)
T ss_pred HHHHHHHHHHcCC-eEEEecCh
Confidence 3555556677998 89999984
No 143
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=41.94 E-value=40 Score=27.98 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
+..+|++.|++|...|..++..+.+.| ++.|++
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~L----ke~GI~ 537 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYL----DKRGIP 537 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHH----HHcCCC
Confidence 446799999999977766665555444 559984
No 144
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=41.43 E-value=1.1e+02 Score=20.72 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 52 ~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
.-..+...++++..+|+.+-.|..-+. ..++..|.. ++..| .++.++.||-.+.
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~sS---e~fA~~l~~-~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALSS---EEFADFLER-LRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCCh---HHHHHHHHH-HHhcC-CeEEEEEeCcccC
Confidence 344455566777788887777763332 223334332 45578 7999999997654
No 145
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=39.81 E-value=1.1e+02 Score=25.36 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
.+.|+|++.+.-. .+.+++..| .+.|| +++.|-||-.
T Consensus 516 ~~ppiIIFvN~kk-----~~d~lAk~L----eK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 516 FDPPIIIFVNTKK-----GADALAKIL----EKAGY-KVTTLHGGKS 552 (673)
T ss_pred CCCCEEEEEechh-----hHHHHHHHH----hhccc-eEEEeeCCcc
Confidence 3578888886532 344455555 55999 8999999864
No 146
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=39.58 E-value=49 Score=23.74 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=26.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc-cEEEeccchhhhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN-SIFVLERGFKGWEA 112 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~-~v~~l~gG~~~w~~ 112 (138)
-|+.|-.+..++..|+......|. ..|+. .|..+.++..+|-+
T Consensus 156 ~Iil~~D~D~AG~~Aa~r~~~~L~----~~G~~v~vv~lP~~~KDwNE 199 (218)
T TIGR00646 156 KIFICFDNDFAGKNAAANLEEILK----KAGFITKVIEIKAAAKDWND 199 (218)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHH----HCCCeEEEEeCCCcCCChhH
Confidence 355576666577777766665554 48984 23445566677744
No 147
>PRK10126 tyrosine phosphatase; Provisional
Probab=39.31 E-value=49 Score=21.75 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=22.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
..|+|+|....-||+.|.. ++++ .+ .++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa----~~~~----~~-~~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAER----LLQR----YH-PELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHH----HHHH----hc-CCeEEEeeeccCC
Confidence 4689999876667776653 2322 22 2355666777555
No 148
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=38.58 E-value=1e+02 Score=20.24 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
..|+|+|-...-||+.|...+..+ .+ .++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~-------~~-~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHL-------AP-DNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHh-------cc-CCeEEECCccCC
Confidence 468999987766887775333321 23 578888888544
No 149
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=38.49 E-value=82 Score=24.75 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCeEEEEeCCCCCC-cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 63 KDTLVFHCALSQVR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 63 ~~~iv~~c~~g~~~-~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+.++.+||+-.... +......+.-.....|++.|+ +++++-||+.+..
T Consensus 31 ~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~-~~~~ligd~ta~i 79 (408)
T PRK05912 31 KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGH-KPIALIGGFTGMI 79 (408)
T ss_pred CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCC-cEEEEEcCceeEc
Confidence 46788999765533 234443332222234677898 6888888887775
No 150
>PRK06148 hypothetical protein; Provisional
Probab=38.43 E-value=88 Score=27.71 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=29.4
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
+..-..+++|++|. -+..+|-+++. ..-|-++|..++|||.+|..
T Consensus 677 p~~~~~v~f~nSGs-EA~e~AlklAr------~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 677 PDGLTVAFFVNSGS-EANSLALRLAR------AHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred CCCcCEEEEeCCcH-HHHHHHHHHHH------HhcCCCeEEEEcCCccCCCc
Confidence 43335789999886 44444434442 23576788889999999854
No 151
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=38.38 E-value=1e+02 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHhcCCCeEEEEeCC
Q 032540 48 SFTDKIFDLIQEVRGKDTLVFHCAL 72 (138)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~iv~~c~~ 72 (138)
++...+.+..+.++.++.++++|+-
T Consensus 42 ~~~~~i~~~i~~~~~~~~viil~Dl 66 (122)
T cd00006 42 DLLEKIKAALAELDSGEGVLILTDL 66 (122)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 4555666666666666778888876
No 152
>PRK13530 arsenate reductase; Provisional
Probab=38.09 E-value=74 Score=20.59 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
+.|+|+|....-||+.|..++..+ .| .++.+...|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~-------~~-~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQY-------LG-DKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHh-------cC-CCEEEECCCCC
Confidence 568888976665666665333211 23 35666666663
No 153
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.81 E-value=96 Score=19.31 Aligned_cols=30 Identities=7% Similarity=0.149 Sum_probs=17.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
+.|++.|..|. .+...+. .+....+..|.+
T Consensus 4 kkIllvC~~G~-sTSll~~----km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGM-STSLLVS----KMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCc-cHHHHHH----HHHHHHHHCCCC
Confidence 57999999998 4433332 232222446763
No 154
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.50 E-value=83 Score=24.78 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
...|+..++|+ .+.+. .+...++++|++.||.+|.++.
T Consensus 72 n~~vlmt~TgG--pCRfg-nYi~~~rkaLk~aG~~~V~vis 109 (420)
T COG3581 72 NDAVLMTQTGG--PCRFG-NYIELLRKALKDAGFRDVPVIS 109 (420)
T ss_pred ccEEEEecCCC--Ccchh-hHHHHHHHHHHHcCCCCCcEEE
Confidence 44566666654 22322 3335677888999999887553
No 155
>PRK10113 cell division modulator; Provisional
Probab=37.40 E-value=28 Score=20.05 Aligned_cols=47 Identities=9% Similarity=0.217 Sum_probs=31.6
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (138)
.++++||-|...-.-....-+ + +--||.+|.+|.|-+-++.-.|-..
T Consensus 7 qqnr~visyvprvepapp~ha------~----kmd~frDVW~LrGKYVAFvl~ge~F 53 (80)
T PRK10113 7 QQNRQIISYVPRVEPAPPEHA------I----KMDSFRDVWMLRGKYVAFVLMGESF 53 (80)
T ss_pred hcCCcceeecccCCCCCchHh------h----hhcchhhhheeccceEEEEEechhh
Confidence 356889999876552322221 1 2379999999999998886665433
No 156
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.07 E-value=99 Score=18.87 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCC
Q 032540 52 KIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 52 ~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
.+..+. ..+.++++..+++.
T Consensus 22 ~l~~L~---~~g~~~~~lTNns~ 41 (101)
T PF13344_consen 22 ALDALR---ERGKPVVFLTNNSS 41 (101)
T ss_dssp HHHHHH---HTTSEEEEEES-SS
T ss_pred HHHHHH---HcCCCEEEEeCCCC
Confidence 344443 35789999998876
No 157
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=36.93 E-value=1e+02 Score=23.36 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHhcCCCeEEEEeCC
Q 032540 48 SFTDKIFDLIQEVRGKDTLVFHCAL 72 (138)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~iv~~c~~ 72 (138)
++...+....+.++.+..++++|+-
T Consensus 44 ~~~~~l~~~i~~~~~~d~vlILtDl 68 (322)
T PRK15088 44 TLIEKYNAQLAKLDTSKGVLFLVDT 68 (322)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4555666666666666667777765
No 158
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=36.54 E-value=1e+02 Score=20.60 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+..++.++|+-+..+ +. .+++.++...+...... .....-|++|.+|.
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~~~-~~-------~~dYpd~a~~va~~V~~-g~~~~GIliCGtGi 70 (148)
T PRK05571 16 EEIIEHLEELGHEVIDLGPDSY-DA-------SVDYPDYAKKVAEAVVA-GEADRGILICGTGI 70 (148)
T ss_pred HHHHHHHHHCCCEEEEcCCCCC-CC-------CCCHHHHHHHHHHHHHc-CCCCEEEEEcCCcH
Confidence 3455666666788999876432 11 13444444444433322 23456799999986
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=35.64 E-value=96 Score=19.23 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=14.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
+++.|-.|. ........++.+|+ ..|| +|.++
T Consensus 2 vl~~~~~~e-~H~lG~~~~~~~l~----~~G~-~V~~l 33 (119)
T cd02067 2 VVIATVGGD-GHDIGKNIVARALR----DAGF-EVIDL 33 (119)
T ss_pred EEEEeeCCc-hhhHHHHHHHHHHH----HCCC-EEEEC
Confidence 455555554 33333334444443 3666 44433
No 160
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=35.61 E-value=91 Score=18.02 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCcc-----CCCccccceecCCcchhHHHHHHHHHhcCCCeEEE
Q 032540 19 RPNIAVIDVRDDERS-----YDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVF 68 (138)
Q Consensus 19 ~~~~~liDvR~~~e~-----~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~ 68 (138)
+..+.|||+.. -| +.|.+..-+.+|-+++...+...+. .++.+++
T Consensus 3 R~eYqLidI~d--GflsLm~e~G~~k~DlklP~~elg~~I~~~f~---~gk~~~v 52 (69)
T cd04468 3 RTEYQLIDIDD--GFLSLMDDDGETREDLKLPEGELGKEIREKFD---EGKDVLV 52 (69)
T ss_pred ceeEEEEeecC--CeEEEEcCCCCcccCCcCCcHHHHHHHHHHHh---CCCcEEE
Confidence 34688999966 44 4688888889998777766666553 4444443
No 161
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=35.44 E-value=98 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.-+++|++|. .+..+|-+++.. ..|-++|..+.|||.+|..
T Consensus 114 ~~v~f~~SGs-EA~e~AlklAr~------~tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 114 PKVLFGLSGS-DAVDMAIKVSKF------STRRPWILAFIGAYHGQTL 154 (457)
T ss_pred CEEEEeCchH-HHHHHHHHHHHH------hcCCCeEEEECCCcCCccH
Confidence 4678898886 444444444422 2465678888999988754
No 162
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.27 E-value=1.2e+02 Score=24.12 Aligned_cols=46 Identities=13% Similarity=0.359 Sum_probs=29.1
Q ss_pred CCeEEEEeCCCC-----CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 63 KDTLVFHCALSQ-----VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 63 ~~~iv~~c~~g~-----~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
.+.|||+..+.. ..+...|..++.+++. .|. +|..+-..+.-|..+
T Consensus 218 ~rsViVvATSD~s~l~R~~aa~~At~IAEyFRD----qG~-~VLL~mDSlTRfA~A 268 (441)
T COG1157 218 KRSVVVVATSDESALMRLKAAFTATTIAEYFRD----QGK-RVLLIMDSLTRFAMA 268 (441)
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh----CCC-eEEEEeecHHHHHHH
Confidence 356666665543 1223445566777755 996 788777899888654
No 163
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=35.17 E-value=59 Score=23.11 Aligned_cols=33 Identities=0% Similarity=-0.027 Sum_probs=23.2
Q ss_pred eecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 42 LHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 42 i~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
..+++.++...++..++..++++|+|+...+.+
T Consensus 73 ~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQG 105 (207)
T PF11288_consen 73 FDLAYSDVRAAFDYYLANYNNGRPFILAGHSQG 105 (207)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChH
Confidence 344555555566666777788999999988744
No 164
>PRK06917 hypothetical protein; Provisional
Probab=34.93 E-value=1.4e+02 Score=23.57 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=26.9
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC---CccEEEeccchhhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG---INSIFVLERGFKGWEA 112 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G---~~~v~~l~gG~~~w~~ 112 (138)
+.....+++|++|. .+..+|-+++.... ...| -..|..++|||.+|..
T Consensus 88 p~~~~~v~f~~sGs-EAve~AlklAr~~~---~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 88 PGDLNWSFFVNSGS-EANETAMKIAIQHF---QERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHHHHHHH---HhcCCCCCCEEEEECCCcCCccH
Confidence 43334688898886 44444433332210 0123 3467788899988853
No 165
>COG1204 Superfamily II helicase [General function prediction only]
Probab=34.71 E-value=2.6e+02 Score=24.17 Aligned_cols=75 Identities=8% Similarity=-0.005 Sum_probs=47.0
Q ss_pred CHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCC--------cchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHH
Q 032540 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPS--------DSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 9 ~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~--------~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~ 80 (138)
...++.++++.. .+.-|.|+...+..-...+++...- ..-...+......+..+..+++||++-. .+...
T Consensus 192 N~~evA~wL~a~-~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~-~a~~~ 269 (766)
T COG1204 192 NAEEVADWLNAK-LVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRK-EAEKT 269 (766)
T ss_pred CHHHHHHHhCCc-ccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCc-hHHHH
Confidence 567888998754 3377889888776655555543322 1222244445555678889999998755 44455
Q ss_pred HHHHH
Q 032540 81 AKRLA 85 (138)
Q Consensus 81 ~~~~~ 85 (138)
|..+.
T Consensus 270 A~~l~ 274 (766)
T COG1204 270 AKKLR 274 (766)
T ss_pred HHHHH
Confidence 54444
No 166
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=34.67 E-value=89 Score=26.09 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
.+.++++|++|...+..+...+... +++.|.+++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~----l~~~~i~~i~i~ 414 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKK----VQDAGLSQISVT 414 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHH----HHHcCCCeeEEE
Confidence 4679999999985554444344444 455666545443
No 167
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=34.33 E-value=2e+02 Score=21.57 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc-cEEEeccchh
Q 032540 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN-SIFVLERGFK 108 (138)
Q Consensus 53 ~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~-~v~~l~gG~~ 108 (138)
+..+.+....+.+++++|++- ..+..+...|.+ .+.. ++..+.|++.
T Consensus 212 l~~l~~~~~~~~~~lVf~~t~-----~~~~~~~~~L~~----~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 212 LERLLEFIKKGGKIAIIVNTV-----DRAQEFYQQLKE----NAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHhhCCCeEEEEECCH-----HHHHHHHHHHHh----hcCCCeEEEEECCCC
Confidence 333444345667899999652 234344455543 5653 6888888864
No 168
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=34.31 E-value=35 Score=19.65 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=13.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHH
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDE 90 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~ 90 (138)
.++++|++|... +..+...|++
T Consensus 2 kilivC~~G~~~----s~~l~~~l~~ 23 (85)
T cd05568 2 KALVVCPSGIGT----SRLLKSKLKK 23 (85)
T ss_pred eEEEECCCCHHH----HHHHHHHHHH
Confidence 589999987633 3344455554
No 169
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=34.26 E-value=1.1e+02 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=25.8
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-|++|++|. .+..++-+++. ..-|-.+|..+.|||.+|.
T Consensus 111 ~~v~f~~SGs-EA~e~AiklAr------~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 111 HKIRFVSSGT-EATMTAVRLAR------GITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred CEEEEeCchH-HHHHHHHHHHH------HhhCCCEEEEEcCccCCCC
Confidence 4578888876 44444434442 2246567778899999986
No 170
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=34.23 E-value=2.5e+02 Score=22.94 Aligned_cols=49 Identities=14% Similarity=0.342 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 48 SFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
.+......+.+.+....+|+++++... -+..++..+...| +++|. +|.+
T Consensus 39 ~~~~a~~~i~~~i~~~~~I~I~gh~D~-DGi~S~~~L~~~L----~~~g~-~v~~ 87 (539)
T TIGR00644 39 DMEKAVERIIEAIENNEKILIFGDYDV-DGITSTAILVEFL----KDLGV-NVDY 87 (539)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEccCC-CcHHHHHHHHHHH----HHCCC-ceEE
Confidence 455555666666677789999987744 4555554444444 45886 4543
No 171
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=34.15 E-value=71 Score=23.53 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
++..+|+.+.+....+..+.. .|...|++.|++++++
T Consensus 140 ~~~a~vlmGHGt~h~an~~Y~----~l~~~l~~~~~~~v~v 176 (262)
T PF06180_consen 140 KDEAVVLMGHGTPHPANAAYS----ALQAMLKKHGYPNVFV 176 (262)
T ss_dssp TTEEEEEEE---SCHHHHHHH----HHHHHHHCCT-TTEEE
T ss_pred CCCEEEEEeCCCCCCccHHHH----HHHHHHHhCCCCeEEE
Confidence 556777777654433323332 3444556699888874
No 172
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=33.95 E-value=1.5e+02 Score=22.16 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=24.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
-.|-+=|.+|..||...++.++..|. .|| +|.+
T Consensus 246 ~~i~igCtGG~HRSV~~~e~l~~~l~-----~~~-~v~~ 278 (288)
T PRK05416 246 LTIAIGCTGGQHRSVAIAERLAERLS-----KGY-NVQV 278 (288)
T ss_pred EEEEEecCCCcccHHHHHHHHHHHHh-----CCC-cEEE
Confidence 35788899999999988887777662 476 4543
No 173
>PRK08149 ATP synthase SpaL; Validated
Probab=33.73 E-value=2.5e+02 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 118 (138)
Q Consensus 80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~ 118 (138)
.+..++.+++. .|. +|.++-..+..|..+..++.
T Consensus 228 ~a~tiAE~fr~----~G~-~Vll~~DslTr~A~A~rEi~ 261 (428)
T PRK08149 228 VATTVAEYFRD----QGK-RVVLFIDSMTRYARALRDVA 261 (428)
T ss_pred HHHHHHHHHHH----cCC-CEEEEccchHHHHHHHHHhH
Confidence 44455566644 897 89888889998877654433
No 174
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=33.62 E-value=1.4e+02 Score=20.17 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccc
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG 106 (138)
.+|.+++..+ ++.. .++..|.+.|...|+ ++++|+|.
T Consensus 3 ~vIwltGlsG-sGKt---TlA~~L~~~L~~~g~-~~~~LDgD 39 (156)
T PF01583_consen 3 FVIWLTGLSG-SGKT---TLARALERRLFARGI-KVYLLDGD 39 (156)
T ss_dssp EEEEEESSTT-SSHH---HHHHHHHHHHHHTTS--EEEEEHH
T ss_pred EEEEEECCCC-CCHH---HHHHHHHHHHHHcCC-cEEEecCc
Confidence 3566665443 3322 233455555667997 89999985
No 175
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=33.18 E-value=76 Score=21.10 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCCCC----CcHHHHHHHHHHHHHhhhhCCCcc
Q 032540 62 GKDTLVFHCALSQV----RGPTCAKRLANYLDEVKEDTGINS 99 (138)
Q Consensus 62 ~~~~iv~~c~~g~~----~~~~~~~~~~~~L~~~l~~~G~~~ 99 (138)
+++.+||.|+.+.. -...+.. .|...|..-||..
T Consensus 14 ~Ek~vvVv~~~~~~~~~~l~~~s~~----~l~~eL~~~GYSy 51 (146)
T PF04763_consen 14 KEKNVVVVCNHSWPGPESLPPESVS----LLIEELEESGYSY 51 (146)
T ss_pred ccCcEEEEEeCCcccccCCChHHHH----HHHHHHhhcCCce
Confidence 56778888875432 2333443 3333445588863
No 176
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=32.72 E-value=1.4e+02 Score=20.71 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
..++++.|-.|. ........++..|+ ..|| +|.+|
T Consensus 84 ~~~vv~~t~~gd-~H~lG~~~v~~~l~----~~G~-~vi~L 118 (197)
T TIGR02370 84 LGKVVCGVAEGD-VHDIGKNIVVTMLR----ANGF-DVIDL 118 (197)
T ss_pred CCeEEEEeCCCc-hhHHHHHHHHHHHH----hCCc-EEEEC
Confidence 357899898877 55555555555554 4999 66655
No 177
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=32.64 E-value=1.6e+02 Score=21.75 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHH-------------
Q 032540 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLAN------------- 86 (138)
Q Consensus 20 ~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~------------- 86 (138)
-+.+|+|+------....||||.. .+..+. .++.++++..+++.+.....+..+..
T Consensus 8 y~~~l~DlDGvl~~G~~~ipga~e--------~l~~L~---~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~T 76 (269)
T COG0647 8 YDGFLFDLDGVLYRGNEAIPGAAE--------ALKRLK---AAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVT 76 (269)
T ss_pred cCEEEEcCcCceEeCCccCchHHH--------HHHHHH---HcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeec
Confidence 356788875543333445666632 344443 36688999998877333323332222
Q ss_pred -------HHHHhhhhCCCccEEEec-cch-hhhhhCCCCcccc
Q 032540 87 -------YLDEVKEDTGINSIFVLE-RGF-KGWEASGKPVCRC 120 (138)
Q Consensus 87 -------~L~~~l~~~G~~~v~~l~-gG~-~~w~~~g~p~~~~ 120 (138)
+|. +..+..+|+++- +|+ ..+...|+.+...
T Consensus 77 S~~at~~~l~---~~~~~~kv~viG~~~l~~~l~~~G~~~~~~ 116 (269)
T COG0647 77 SGDATADYLA---KQKPGKKVYVIGEEGLKEELEGAGFELVDE 116 (269)
T ss_pred HHHHHHHHHH---hhCCCCEEEEECCcchHHHHHhCCcEEecc
Confidence 221 223335777664 344 6777788776663
No 178
>PRK06149 hypothetical protein; Provisional
Probab=32.54 E-value=1.3e+02 Score=26.52 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=28.8
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+.+...+++|++|. .+..++-+++.. ..|-.++..+++||.+|.
T Consensus 638 p~~~~~v~f~~SGs-EA~e~AlklAr~------~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 638 PDGLDTVFLVNSGS-EANDLAIRLAWA------ASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred CCCcCEEEEeCCch-HHHHHHHHHHHH------hcCCCeEEEEeCCCCCcC
Confidence 43345788898886 444444444432 256667888999999886
No 179
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=32.51 E-value=73 Score=21.84 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.9
Q ss_pred cCCCeEEEEeCCCCCCcHHH
Q 032540 61 RGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~ 80 (138)
+.++.++++|..|..|+...
T Consensus 107 sLGktvYVHCKAGRtRSaTv 126 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATV 126 (183)
T ss_pred ccCCeEEEEecCCCccchhh
Confidence 56789999999998777543
No 180
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=32.21 E-value=1.1e+02 Score=24.14 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=26.0
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.-|+||++|. .+..++-+++.. ..|-++|..++|+|.+|..
T Consensus 104 ~~v~f~~SGs-eA~e~AiklAr~------~tgr~~ii~~~~~YHG~t~ 144 (445)
T PRK08593 104 KRVTFGLSGS-DANDGIIKFARA------YTGRPYIISFTNAYHGSTY 144 (445)
T ss_pred CEEEECCchH-HHHHHHHHHHHH------hhCCCeEEEECCCcCCCcH
Confidence 3688888876 344444344322 2465678889999998853
No 181
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=32.17 E-value=1.4e+02 Score=23.95 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-+.+|++|. .+..++-+++. ..-|-++|..+.|+|.+|.
T Consensus 156 ~~v~f~~SGs-EA~e~AlklAR------~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 156 EMVRFVNSGT-EACMGVLRLAR------AYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred CEEEEeCChH-HHHHHHHHHHH------HhcCCCEEEEECCccCCCc
Confidence 4688899886 44444434442 2356667888899999985
No 182
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.84 E-value=78 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 81 AKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 81 ~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
++.+...|+. .|. +|+++.|||...
T Consensus 93 i~eLv~~L~~----~~~-~v~liSGGF~~~ 117 (227)
T KOG1615|consen 93 IRELVSRLHA----RGT-QVYLISGGFRQL 117 (227)
T ss_pred HHHHHHHHHH----cCC-eEEEEcCChHHH
Confidence 4444556654 885 899999998765
No 183
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=31.63 E-value=1.6e+02 Score=19.73 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 53 ~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
-..+...++ +..+|+.|..|..-+. ..++..|.+ ....| .++..+.||-.++..
T Consensus 56 ~~~il~~~~-~~~~i~LDe~Gk~~sS---~~fA~~l~~-~~~~g-~~i~FvIGGa~G~~~ 109 (153)
T TIGR00246 56 GDRILAAIG-KAHVVTLDIPGKPWTT---PQLADTLEK-WKTDG-RDVTLLIGGPEGLSP 109 (153)
T ss_pred HHHHHHhCC-CCeEEEEcCCCCcCCH---HHHHHHHHH-HhccC-CeEEEEEcCCCcCCH
Confidence 334445556 4677888888763332 223344432 12356 579999999766633
No 184
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=31.37 E-value=58 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=30.0
Q ss_pred eEEEEeCCCCCC------cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540 65 TLVFHCALSQVR------GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116 (138)
Q Consensus 65 ~iv~~c~~g~~~------~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p 116 (138)
..|++|++.+.. +...+..++.+++ ++|+ +|.++-.....|.++..+
T Consensus 290 RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfR----d~G~-~Vllm~DStSR~AeAlRE 342 (586)
T PRK04192 290 RTVLIANTSNMPVAAREASIYTGITIAEYYR----DMGY-DVLLMADSTSRWAEALRE 342 (586)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHH----HCCC-CEEEEecChHHHHHHHHH
Confidence 456667665522 1223335556664 4898 899899999999776433
No 185
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=31.20 E-value=1.6e+02 Score=19.56 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=29.5
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+..++-++|+-+. .+++.++...+...... .....=|++|.+|.
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~------------~~dypd~a~~va~~V~~-~e~~~GIliCGtGi 66 (141)
T PRK12613 16 ELIKSFLQEEGYDIIDVTDI------------NSDFIDNTLAVAKAVNE-AEGRLGIMVDAYGA 66 (141)
T ss_pred HHHHHHHHHCCCEEEEcCCC------------CCChHHHHHHHHHHHHc-CCCceEEEEcCCCH
Confidence 34556666667889998651 13444444444433322 23455688999985
No 186
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=31.17 E-value=2e+02 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.-+++|.+|. -+..+|-+++.........-|-++|..+.|||.+|..
T Consensus 103 ~~v~f~~sGs-eA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~ 149 (423)
T PRK05964 103 DHVFFSDSGS-VAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTI 149 (423)
T ss_pred CEEEEeCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccH
Confidence 4578888886 4444444444322110001244578889999988753
No 187
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=30.88 E-value=2.2e+02 Score=23.91 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 53 ~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
+..+......+..++|+|.+ ...+..++..|. ..|+ ++..+.|++.
T Consensus 436 ~~~L~~~~~~g~~viIf~~t-----~~~ae~L~~~L~----~~gi-~~~~~h~~~~ 481 (652)
T PRK05298 436 LSEIRKRVAKGERVLVTTLT-----KRMAEDLTDYLK----ELGI-KVRYLHSDID 481 (652)
T ss_pred HHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHHHh----hcce-eEEEEECCCC
Confidence 33333334567889999964 333545555554 4888 5667766654
No 188
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.82 E-value=1.3e+02 Score=18.86 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=17.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCC
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGI 97 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~ 97 (138)
++|.++|..|. +...-+ ..++++.+..|.
T Consensus 2 k~IlLvC~aGm-STSlLV----~Km~~aA~~kg~ 30 (102)
T COG1440 2 KKILLVCAAGM-STSLLV----TKMKKAAESKGK 30 (102)
T ss_pred ceEEEEecCCC-cHHHHH----HHHHHHHHhCCC
Confidence 46899999887 332222 344444455665
No 189
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=30.77 E-value=1.3e+02 Score=23.68 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=26.5
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
-|+||++|. -+..+|-+++.. .-|-.+|..++|||.+|..
T Consensus 117 ~v~f~~sGs-eA~e~AlklAr~------~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 117 KVLFLNSGA-EAVENAVKIARK------YTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred EEEEcCCcH-HHHHHHHHHHHH------HhCCCcEEEECCCcCccch
Confidence 688898886 444444444422 2465678888999988854
No 190
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.52 E-value=1.6e+02 Score=20.79 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
..++++.|-.|. ........++.+|+ ..|| +|.+|
T Consensus 88 ~~~vvl~t~~gd-~HdiG~~iv~~~l~----~~G~-~Vi~L 122 (213)
T cd02069 88 KGKIVLATVKGD-VHDIGKNLVGVILS----NNGY-EVIDL 122 (213)
T ss_pred CCeEEEEeCCCc-hhHHHHHHHHHHHH----hCCC-EEEEC
Confidence 467899998887 55555555555554 5999 56555
No 191
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=30.46 E-value=1.2e+02 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
++..++.+++. .|. +|.++-..+..|..+.
T Consensus 245 ~a~aiAEyfrd----~G~-~VLl~~DslTR~A~A~ 274 (451)
T PRK05688 245 YCTRIAEYFRD----KGK-NVLLLMDSLTRFAQAQ 274 (451)
T ss_pred HHHHHHHHHHH----CCC-CEEEEecchhHHHHHH
Confidence 33455666644 897 8888888898887654
No 192
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=30.39 E-value=1.2e+02 Score=18.44 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCCcHHHH---HHHHHHHHHhhhhCCCccEE
Q 032540 65 TLVFHCALSQVRGPTCA---KRLANYLDEVKEDTGINSIF 101 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~---~~~~~~L~~~l~~~G~~~v~ 101 (138)
+.|++|..+. +...++ ..+...|++.+.+.|-.+|.
T Consensus 2 ~~ilVCth~r-rd~~C~~~g~~l~~~l~~~l~~~~~~~v~ 40 (97)
T cd03062 2 PLVLVCTHGK-RDKRCGICGPPLAAELRAELPEHGPGGVR 40 (97)
T ss_pred CEEEEeCCCC-CCcChhhcCHHHHHHHHHHHHHhCCCceE
Confidence 4688897543 222222 23455666666666643444
No 193
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=30.28 E-value=2.6e+02 Score=21.59 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHHHHHhcC-----CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540 52 KIFDLIQEVRG-----KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT 121 (138)
Q Consensus 52 ~~~~~~~~~~~-----~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~ 121 (138)
.+..++++... .+|.|+.|-..+ ....-- +.++++++..|-++|+.++.++.+-..+|+|+..+.
T Consensus 84 ml~~fik~~~~~~~~~~~prI~i~vP~g-~T~VEr----rAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~ 153 (342)
T COG1077 84 MLKYFIKKVHKNGSSFPKPRIVICVPSG-ITDVER----RAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPT 153 (342)
T ss_pred HHHHHHHHhccCCCCCCCCcEEEEecCC-ccHHHH----HHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCC
Confidence 45555555332 234466664433 222222 122334456899999999999999999999988765
No 194
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=30.09 E-value=67 Score=20.33 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=23.4
Q ss_pred ccccCHHHHHhhhCC-CCeEEEEecCCCcc
Q 032540 5 ISYISGSQLLSLKRR-PNIAVIDVRDDERS 33 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~-~~~~liDvR~~~e~ 33 (138)
-..||-+++.+++.. .++.|+|+.+.++-
T Consensus 17 S~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 17 SSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred cceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 356999999999875 47889999987763
No 195
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.06 E-value=1.7e+02 Score=19.52 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=27.8
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~ 107 (138)
..+-.+|..|.... .... +...+.++|++.|-.++.++-||.
T Consensus 61 ~~dv~vIgvSsl~g-~h~~----l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 61 EEDVDVIGVSSLDG-GHLT----LVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred hcCCCEEEEEeccc-hHHH----HHHHHHHHHHHhCCcceEEeecCc
Confidence 56778888896533 2222 223455556679999999888885
No 196
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=29.88 E-value=1.1e+02 Score=17.43 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=19.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
+.|++.-+... .+..++..+...|. ..|+ +++++
T Consensus 44 ~~vii~~D~D~-aG~~a~~~~~~~l~----~~g~-~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDE-AGQKAALRALELLL----KLGL-NVRVL 77 (79)
T ss_pred CeEEEEECCCH-HHHHHHHHHHHHHH----HCCC-eEEEE
Confidence 44555444333 56666655555554 4787 57654
No 197
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=29.84 E-value=2.7e+02 Score=23.16 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEE
Q 032540 48 SFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIF 101 (138)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~ 101 (138)
.+......+.+.+.++.+|++|.+-.. .+..+...+.. .|++.|..++.
T Consensus 54 ~m~~a~~ri~~ai~~~e~I~I~gDyD~-DGitstail~~----~L~~~g~~~~~ 102 (575)
T PRK11070 54 GIEKAVELLYNALREGTRIIVVGDFDA-DGATSTALSVL----ALRSLGCSNVD 102 (575)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCc-cHHHHHHHHHH----HHHHcCCCceE
Confidence 344445555555678889999887654 44444433333 34558885453
No 198
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=29.80 E-value=2.5e+02 Score=21.32 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=24.0
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccce
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSL 42 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi 42 (138)
+++.+++..=+.+|.|+--.-.....-|||+.
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs~ 44 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGSP 44 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCChH
Confidence 55666776657899999887777777788873
No 199
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=29.77 E-value=81 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHHhhhhCCCccEEEeccch
Q 032540 76 RGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (138)
Q Consensus 76 ~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~ 107 (138)
.+..+.+.++..|+..|...|. +|.+++=|+
T Consensus 180 ~SK~aVeaf~D~lR~EL~~fGV-~VsiiePG~ 210 (322)
T KOG1610|consen 180 VSKFAVEAFSDSLRRELRPFGV-KVSIIEPGF 210 (322)
T ss_pred hhHHHHHHHHHHHHHHHHhcCc-EEEEeccCc
Confidence 4556778888889888999998 789888774
No 200
>PRK07046 aminotransferase; Validated
Probab=29.68 E-value=56 Score=25.92 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=26.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-|.+|++|. .+..+|-+++. ..-|-++|..++|||.+|.
T Consensus 131 ~~v~F~nSGt-EA~e~AlrlAR------~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 131 PYWQVATTAT-DANRFVLRWAR------AVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred CEEEEECCHH-HHHHHHHHHHH------HhhCCCEEEEECCCCCCCc
Confidence 3578899886 34444434442 2247677888899999984
No 201
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.58 E-value=1.7e+02 Score=20.26 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
..++++.|-.|. ........++.+|+. .|| +|.+|
T Consensus 82 ~~~vl~~~~~gd-~H~lG~~~v~~~l~~----~G~-~vi~l 116 (201)
T cd02070 82 KGKVVIGTVEGD-IHDIGKNLVATMLEA----NGF-EVIDL 116 (201)
T ss_pred CCeEEEEecCCc-cchHHHHHHHHHHHH----CCC-EEEEC
Confidence 457888888776 555556566666644 999 56544
No 202
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=29.13 E-value=1.3e+02 Score=23.78 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=25.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-|+||++|. .+..+|-+++. ...|-+.+..+.|||.+|.
T Consensus 102 ~~v~f~~sGs-EAve~AlklAr------~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 102 PKVSFGLSGS-DANDGAIKFAR------AYTKRRKILSYLRSYYGST 141 (443)
T ss_pred CEEEEcCCHH-HHHHHHHHHHH------HhcCCCeEEEEeCCcCCcC
Confidence 4588898876 44444434442 2356667888888888874
No 203
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=29.09 E-value=96 Score=25.79 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
.+..-|+||.+ ..-++.++.+|.. .|+ ++..|-||+.
T Consensus 229 ~~~~GIIYc~s-----Rk~~E~ia~~L~~----~g~-~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLT-----RKKVEELAEWLRK----NGI-SAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEee-----HHhHHHHHHHHHH----CCC-ceEEecCCCC
Confidence 34567999954 3445566677765 798 7788888884
No 204
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=28.80 E-value=1.7e+02 Score=23.22 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=27.6
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
+.....++||++|. .+..++-+++.... ...|-..+..++|+|.+|..
T Consensus 131 p~~~~~v~f~~SGs-EA~e~AlklAr~~t---~~~gr~~ii~~~~~yHG~t~ 178 (442)
T TIGR03372 131 PGKLKYSFFCNSGT-ESVEAALKLAKAYQ---SPRGKFTFIAASGAFHGKSL 178 (442)
T ss_pred CCCcCEEEEeCCch-HHHHHHHHHHHHHH---hhcCCcEEEEECCCccCCCH
Confidence 33335688898886 34444434442211 01265567888999988853
No 205
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=28.55 E-value=2.8e+02 Score=21.52 Aligned_cols=53 Identities=6% Similarity=0.053 Sum_probs=30.6
Q ss_pred HhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 59 EVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 59 ~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.+..++++.+|++.+..........+.-...+.|++.|+ +++++-+.+.++..
T Consensus 60 ~~~~~~~~~iytG~~PSG~lHLGh~~~~~~~~~lQ~~g~-~~~i~IaD~ha~~~ 112 (368)
T PRK12285 60 AYRNGKPFAVYTGFMPSGPMHIGHKMVFDELKWHQEFGA-NVYIPIADDEAYAA 112 (368)
T ss_pred HHhcCCCeEEEEccCCCCCccHHHHHHHHHHHHHHhcCC-CEEEEecchHHHhc
Confidence 335678888998765532233333222112224566887 67777777777654
No 206
>PRK06062 hypothetical protein; Provisional
Probab=28.49 E-value=1.4e+02 Score=23.67 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=26.9
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+.+-.-|++|++|. .+..+|-+++. ...|-.+|..+.|||.+|.
T Consensus 109 p~~~~~v~f~~SGs-EAve~AlklAr------~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 109 PGDLSKVFFTNGGA-DANEHAVRMAR------LHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CCCCCEEEEcCChH-HHHHHHHHHHH------HhhCCceEEEEeCCCCCCC
Confidence 33334688898876 34444433432 2246567888899998884
No 207
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=28.48 E-value=53 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=15.7
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHH
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDE 90 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~ 90 (138)
...++++.++... ..+++.++..|+.
T Consensus 89 ~~~~v~vL~~~~t---~Saae~fa~~lk~ 114 (169)
T PF03572_consen 89 FNGPVYVLTDENT---ASAAEIFASALKD 114 (169)
T ss_dssp SSSEEEEEE-TTB---BTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC---CChhHHHHHHHHh
Confidence 4578888887543 3346666766644
No 208
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=28.37 E-value=1.2e+02 Score=17.37 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=3.6
Q ss_pred EEEeccch
Q 032540 100 IFVLERGF 107 (138)
Q Consensus 100 v~~l~gG~ 107 (138)
+.++.||-
T Consensus 34 ~~lvhGga 41 (71)
T PF10686_consen 34 MVLVHGGA 41 (71)
T ss_pred EEEEECCC
Confidence 44444444
No 209
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=28.22 E-value=67 Score=18.66 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=27.7
Q ss_pred ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCC
Q 032540 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALS 73 (138)
Q Consensus 5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g 73 (138)
...++++.|..+++. ++ +|.-.+|...+ ++ +......+..++..+.-+|+|....
T Consensus 5 ~~~L~~eTL~nLIee--fv---~ReGTdyG~~E------~s---L~~kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 5 YQQLPPETLNNLIEE--FV---LREGTDYGEQE------LS---LEEKVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp GGGS-HHHHHHHHHH--HH---H---------------------HHHHHHHHHHHHHTTSEEEEE-TTT
T ss_pred hHHCCHHHHHHHHHH--HH---HccCcccCccc------cc---HHHHHHHHHHHHHcCCEEEEECCcc
Confidence 456777777777752 33 55555543322 22 5556677777778888888888643
No 210
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=28.13 E-value=2.6e+02 Score=23.61 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 52 ~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
.+.++.....++..++|+|.+ ...+..++..|.+ .|+ .+..+.|++.
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~t-----k~~ae~L~~~L~~----~gi-~~~~lh~~~~ 477 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLT-----KKMAEDLTDYLKE----LGI-KVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECC-----HHHHHHHHHHHhh----hcc-ceeeeeCCCC
Confidence 344443334567889999964 3335455556644 787 5666766654
No 211
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=27.88 E-value=2.3e+02 Score=21.89 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=24.6
Q ss_pred hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
+|. -.++++|++|. .+...+-++++-+ .+..+|..|+--+.+
T Consensus 99 lPe-Lsvc~F~NSGS-EANDLALRLAR~f------tkhqDvItldHAYHG 140 (452)
T KOG1403|consen 99 LPE-LSVCFFVNSGS-EANDLALRLARNF------TKHQDVITLDHAYHG 140 (452)
T ss_pred CCC-ceEEEEecCCc-hhhHHHHHHHHhh------cccCceEEEechhcc
Confidence 344 77899999987 3333333333322 456677777654443
No 212
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=27.76 E-value=56 Score=22.93 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=13.5
Q ss_pred CCCeEEEEeCCCCCCcHH
Q 032540 62 GKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~ 79 (138)
...||+|+|..|..|+..
T Consensus 165 ~~~pivVHC~~G~gRsg~ 182 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGT 182 (231)
T ss_pred CCCCeEEECCCCCCccch
Confidence 367999999988655543
No 213
>PRK05965 hypothetical protein; Provisional
Probab=27.70 E-value=2.5e+02 Score=22.31 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=26.7
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC---CccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG---INSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G---~~~v~~l~gG~~~w~ 111 (138)
+.+-.-+++|++|. .+..+|-+++.... ...| -.+|..+++||.+|.
T Consensus 104 p~~~~~v~f~~sGS-EAve~AlKlAr~~~---~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 104 PGSLNHVYFTLGGS-DAVDSAVRFIRHYW---NATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred CCCcCEEEEeCChh-HHHHHHHHHHHHHH---HhcCCCCccEEEEecCCcCccc
Confidence 43444688898876 34444434442211 1124 346778899998885
No 214
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=27.50 E-value=1.6e+02 Score=23.91 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=30.8
Q ss_pred EEEeCCCCCCc------HHHHHHHHHHHHHhhhhCCCccE------EEeccc--hhhhhhCCCCccccCC
Q 032540 67 VFHCALSQVRG------PTCAKRLANYLDEVKEDTGINSI------FVLERG--FKGWEASGKPVCRCTD 122 (138)
Q Consensus 67 v~~c~~g~~~~------~~~~~~~~~~L~~~l~~~G~~~v------~~l~gG--~~~w~~~g~p~~~~~~ 122 (138)
.|++++|.+++ ..|+. .|..+|.+.|.++. ....|| ...|.+.|.|-..+.-
T Consensus 418 lviDnSGSMrGRpItvAatcAd----ilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrl 483 (620)
T COG4547 418 LVIDNSGSMRGRPITVAATCAD----ILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRL 483 (620)
T ss_pred eeeccCCCcCCcceehhHHHHH----HHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhh
Confidence 56678876554 34554 44445566887532 122555 4578888888666543
No 215
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=27.45 E-value=75 Score=20.43 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=5.7
Q ss_pred EEEeCCCCCCcHHH
Q 032540 67 VFHCALSQVRGPTC 80 (138)
Q Consensus 67 v~~c~~g~~~~~~~ 80 (138)
+|+|....-||+.|
T Consensus 2 LFvC~~N~~RS~mA 15 (129)
T TIGR02691 2 YFLCTGNSCRSQMA 15 (129)
T ss_pred EEEcCCchHHHHHH
Confidence 44454333334333
No 216
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=27.43 E-value=1.9e+02 Score=19.21 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+++.|...++-++|+-+ .+ + +.+.++...+...... .....=|++|.+|.
T Consensus 16 ~~i~~~L~~~G~eV~D~G~-~~--------~--~dYpd~a~~va~~V~~-~e~~~GIliCGtGi 67 (141)
T TIGR01118 16 DVIKNFLVDNGFEVIDVTE-GD--------G--QDFVDVTLAVASEVQK-DEQNLGIVIDAYGA 67 (141)
T ss_pred HHHHHHHHHCCCEEEEcCC-CC--------C--CCcHHHHHHHHHHHHc-CCCceEEEEcCCCH
Confidence 3455666666788999865 11 2 3444444444433322 23355688999986
No 217
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.43 E-value=2.1e+02 Score=19.77 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=21.0
Q ss_pred hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHH-hhhhCCCccEE
Q 032540 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDE-VKEDTGINSIF 101 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~-~l~~~G~~~v~ 101 (138)
+..+.+ |+.|..|. ++..|....+.++.+ .+.+.+++-+.
T Consensus 38 l~~G~K-vl~cGNGg-SaadAqHfaael~gRf~~eR~~lpaIa 78 (176)
T COG0279 38 LLNGNK-VLACGNGG-SAADAQHFAAELTGRFEKERPSLPAIA 78 (176)
T ss_pred HHcCCE-EEEECCCc-chhhHHHHHHHHhhHHHhcCCCCCeeE
Confidence 445555 66688776 554444333332222 34667776544
No 218
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=27.37 E-value=75 Score=25.06 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.-|+||++|. .+..+|-+++. ...|-++|..++|||.+|..
T Consensus 116 ~~v~f~~SGs-EA~e~AlklAr------~~tgr~~Ii~~~~~yHG~t~ 156 (441)
T PRK05769 116 KKVFFTNSGT-ESNEAAIKIAR------YHTGRKYIIAFLGAFHGRTY 156 (441)
T ss_pred CEEEECCchH-HHHHHHHHHHH------HHhCCCeEEEECCCcCCccH
Confidence 4688898886 44444444442 22566678888999988853
No 219
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=27.31 E-value=1.7e+02 Score=20.12 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=31.5
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+..++-++|+-+..+ + + +++.++...+...... .....-|++|.+|.
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~-e------~--~dYpd~a~~va~~V~~-g~~d~GIliCGTGi 69 (171)
T PRK08622 16 MAVSDYLKSKGHEVIDVGTYDF-T------R--THYPIFGKKVGEAVAS-GEADLGVCICGTGV 69 (171)
T ss_pred HHHHHHHHHCCCEEEEcCCCCC-C------C--CChHHHHHHHHHHHHc-CCCcEEEEEcCCcH
Confidence 3456666666788999987542 1 1 3344444444433322 23466799999985
No 220
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=27.23 E-value=93 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=25.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-+++|.+|. .+..+|-+++. ...|-..|..+.|||.+|.
T Consensus 95 ~~v~f~~sGs-eA~e~AlklAr------~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 95 KKSVFFNSGA-EAVENAVKIAR------SYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred CEEEEeCCcH-HHHHHHHHHHH------HhcCCCcEEEECCCcCCCc
Confidence 3578888876 44444444442 2256567888899998874
No 221
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=27.05 E-value=1.6e+02 Score=19.51 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+..++.++|+-+... . .+++.++...+...... .....-|++|.+|.
T Consensus 15 ~~i~~~L~~~g~eV~D~G~~~~-------~--~~dy~~~a~~va~~V~~-~~~d~GIliCgtGi 68 (140)
T PF02502_consen 15 EAIKEYLEEKGYEVIDFGTYSE-------D--SVDYPDFAEKVAEAVAS-GEADRGILICGTGI 68 (140)
T ss_dssp HHHHHHHHHTTEEEEEESESST-------S--T--HHHHHHHHHHHHHT-TSSSEEEEEESSSH
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-------C--CCCHHHHHHHHHHHHHc-ccCCeEEEEcCCCh
Confidence 3455566655789999987543 1 23333333334433322 23357899999885
No 222
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=26.70 E-value=1.6e+02 Score=23.17 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred CccccCHHHHHhhhCCCCeEEE---------------------------EecCCCccCCCccccceec-------CCcch
Q 032540 4 SISYISGSQLLSLKRRPNIAVI---------------------------DVRDDERSYDGHITGSLHY-------PSDSF 49 (138)
Q Consensus 4 ~~~~i~~~~~~~~l~~~~~~li---------------------------DvR~~~e~~~ghipgAi~i-------p~~~l 49 (138)
.++..+++|...++.+.+-+|| +||-.-.--.|++||-.|+ |++..
T Consensus 292 ~vk~~saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVAGRmPGHMNVLLAEA~VpYd~v 371 (463)
T COG1282 292 EVKEGSAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVAGRMPGHMNVLLAEAKVPYDIV 371 (463)
T ss_pred ceeccCHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccccCCCcchhhhhhhccCCHHHH
Confidence 4566777777777765444443 2332222246888998775 44432
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCC
Q 032540 50 TDKIFDLIQEVRGKDTLVFHCAL 72 (138)
Q Consensus 50 ~~~~~~~~~~~~~~~~iv~~c~~ 72 (138)
. .++++.+.+.+.+.++++..+
T Consensus 372 ~-emddIN~dF~~tDVvlVIGAN 393 (463)
T COG1282 372 L-EMDEINDDFADTDVVLVIGAN 393 (463)
T ss_pred h-hHHhhcchhccccEEEEEccC
Confidence 2 345554445555555555543
No 223
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=26.65 E-value=1.2e+02 Score=24.78 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=38.0
Q ss_pred hhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhh
Q 032540 15 SLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKED 94 (138)
Q Consensus 15 ~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~ 94 (138)
.++.+++..|+|-=+ . |+..+.+. ++..+....+. .+|++++. |.- -..++... ..
T Consensus 167 aL~~~pDlLLLDEPT--N----------HLD~~~i~-WLe~~L~~~~g--tviiVSHD---R~F--Ld~V~t~I----~~ 222 (530)
T COG0488 167 ALLEEPDLLLLDEPT--N----------HLDLESIE-WLEDYLKRYPG--TVIVVSHD---RYF--LDNVATHI----LE 222 (530)
T ss_pred HHhcCCCEEEEcCCC--c----------ccCHHHHH-HHHHHHHhCCC--cEEEEeCC---HHH--HHHHhhhe----EE
Confidence 344567788888422 1 34433322 44444333232 78888864 211 11111111 11
Q ss_pred CCCccEEEeccchhhhhhC
Q 032540 95 TGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 95 ~G~~~v~~l~gG~~~w~~~ 113 (138)
+-...+..+.|+|..|.+.
T Consensus 223 ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 223 LDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred ecCCceeEecCCHHHHHHH
Confidence 3333788999999998653
No 224
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.42 E-value=3e+02 Score=21.13 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=12.2
Q ss_pred CCccEEEeccchhhh
Q 032540 96 GINSIFVLERGFKGW 110 (138)
Q Consensus 96 G~~~v~~l~gG~~~w 110 (138)
+.+-+.++.||+..+
T Consensus 282 ~~~~~~vleGGY~~~ 296 (340)
T COG0123 282 GGPVVAVLEGGYNLD 296 (340)
T ss_pred CCCeEEEecCCCChH
Confidence 666788999999875
No 225
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=26.33 E-value=72 Score=22.85 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=12.5
Q ss_pred HHhhhCCCCeEEEEecCC
Q 032540 13 LLSLKRRPNIAVIDVRDD 30 (138)
Q Consensus 13 ~~~~l~~~~~~liDvR~~ 30 (138)
+.+.+...+.+|||+|..
T Consensus 88 ~~~~l~~~~~LIIDLR~N 105 (250)
T cd07563 88 ALDKLADTDALIIDLRYN 105 (250)
T ss_pred HHHHhcCCCeEEEEECCC
Confidence 334444557899999975
No 226
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=26.33 E-value=2.1e+02 Score=19.26 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=30.5
Q ss_pred HHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+. .++.++|+-+..+ + + +.+.++...+...... .....-|++|.+|.
T Consensus 18 ~~l~~~L~~~~~g~eV~D~G~~~~-~------~--~dYp~~a~~va~~V~~-~~~~~GIliCGtGi 73 (151)
T PTZ00215 18 NEIIDYIKNKGKEYKIEDMGTYTA-E------S--VDYPDFAEKVCEEVLK-GEADTGILVCGSGI 73 (151)
T ss_pred HHHHHHHHhccCCCEEEEcCCCCC-C------C--CCHHHHHHHHHHHHhc-CCCcEEEEEcCCcH
Confidence 345566666 6788999876431 1 1 3333443333333221 23456799999985
No 227
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=26.31 E-value=1.8e+02 Score=23.15 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
+.+...+++|++|. .+..+|-+++..... ..|-.++..+.|||.+|..
T Consensus 138 p~~~~~v~f~~SGs-EAve~AlklAr~~t~---~~gr~~ii~~~~~yHG~t~ 185 (459)
T PRK11522 138 PGKLKYSFFCNSGT-ESVEAALKLAKAYQS---PRGKFTFIATSGAFHGKSL 185 (459)
T ss_pred CCCCCEEEEeCCch-HHHHHHHHHHHHHhc---cCCCcEEEEecCCCCCCcH
Confidence 33334688898886 444455444432210 1133357788899988853
No 228
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.94 E-value=1.4e+02 Score=23.85 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
.|++.|+.|+..+.... .++.| ...||..+.++
T Consensus 268 ~V~Ilcgpgnnggdg~v--~gRHL----~~~G~~~vi~~ 300 (453)
T KOG2585|consen 268 LVAILCGPGNNGGDGLV--CGRHL----AQHGYTPVIYY 300 (453)
T ss_pred eEEEEeCCCCccchhHH--HHHHH----HHcCceeEEEe
Confidence 38888988874433221 22333 45999766544
No 229
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=25.72 E-value=3.2e+02 Score=21.86 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=40.7
Q ss_pred HHHHHhhhC---CCCeEEEEecCCCccCCCcccccee-cCCcc-------h----hHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 10 GSQLLSLKR---RPNIAVIDVRDDERSYDGHITGSLH-YPSDS-------F----TDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 10 ~~~~~~~l~---~~~~~liDvR~~~e~~~ghipgAi~-ip~~~-------l----~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
.+++...|. .+++.|-.++.+..|...+.-|.+- +++.+ + -..+..+... +...-+|++|.+|.
T Consensus 40 l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~-d~~nVvvvHCk~Gk 118 (434)
T KOG2283|consen 40 LEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSE-DPKNVVVVHCKAGK 118 (434)
T ss_pred HHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhc-CccceEEEEccCCC
Confidence 344554443 4678899999877888888877654 44332 1 1123333332 34566899998876
Q ss_pred CCc
Q 032540 75 VRG 77 (138)
Q Consensus 75 ~~~ 77 (138)
.|.
T Consensus 119 grt 121 (434)
T KOG2283|consen 119 GRT 121 (434)
T ss_pred cce
Confidence 444
No 230
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=25.65 E-value=1e+02 Score=22.06 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=13.1
Q ss_pred CCeEEEEeCCCCCCcHH
Q 032540 63 KDTLVFHCALSQVRGPT 79 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~ 79 (138)
..||||+|..|..|+..
T Consensus 193 ~~pivVHC~~G~gRsg~ 209 (258)
T smart00194 193 TGPIVVHCSAGVGRTGT 209 (258)
T ss_pred CCCEEEEeCCCCCccch
Confidence 57999999988755543
No 231
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=25.45 E-value=1.5e+02 Score=23.09 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCC------cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540 65 TLVFHCALSQVR------GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (138)
Q Consensus 65 ~iv~~c~~g~~~------~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g 114 (138)
..|++|++.+.. +...+..++.+++ +.|+ +|.++-.....|.++.
T Consensus 220 rtvlV~nts~~p~~~R~~s~yta~tiAEYfr----d~G~-dVll~~Ds~tR~A~A~ 270 (369)
T cd01134 220 RTVLIANTSNMPVAAREASIYTGITIAEYFR----DMGY-NVALMADSTSRWAEAL 270 (369)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHH----HcCC-CEEEEEcChhHHHHHH
Confidence 345556655422 1222334555554 4897 8888888999997764
No 232
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=25.42 E-value=1.4e+02 Score=21.06 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l 103 (138)
.+.++|.+...||..|= ..| ++.|| +|.-+
T Consensus 3 ~~avVCasN~NRSMEAH----~~L----~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAH----NVL----KKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHH----HHH----HHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHH----HHH----HHCCC-ceEee
Confidence 57889999887887663 344 34999 67654
No 233
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.33 E-value=1.7e+02 Score=18.00 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=22.3
Q ss_pred HHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEecc
Q 032540 56 LIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLER 105 (138)
Q Consensus 56 ~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~g 105 (138)
+.+.+.+.+.|++++ +|. +...+..++..|. ..|. .+..+.+
T Consensus 6 ~~~~i~~~~~i~i~g-~g~--s~~~a~~~~~~l~----~~~~-~~~~~~~ 47 (139)
T cd05013 6 AVDLLAKARRIYIFG-VGS--SGLVAEYLAYKLL----RLGK-PVVLLSD 47 (139)
T ss_pred HHHHHHhCCEEEEEE-cCc--hHHHHHHHHHHHH----HcCC-ceEEecC
Confidence 333344556665554 443 4556655565554 4787 5555543
No 234
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=25.22 E-value=2.1e+02 Score=19.02 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=31.3
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+..++.++|+-+... + .+.+.++...+...... ...+.-|++|.+|.
T Consensus 14 ~~l~~~L~~~g~eV~D~G~~~~-~--------~~dYpd~a~~va~~V~~-g~~~~GIliCGtGi 67 (144)
T TIGR00689 14 SEIIEHLKQKGHEVIDCGTLYD-E--------RVDYPDYAKLVADKVVA-GEVSLGILICGTGI 67 (144)
T ss_pred HHHHHHHHHCCCEEEEcCCCCC-C--------CCChHHHHHHHHHHHHc-CCCceEEEEcCCcH
Confidence 3456666666789999976431 1 13444444444443322 23456799999985
No 235
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=25.17 E-value=2.9e+02 Score=21.91 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC---CccEEEeccchh
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG---INSIFVLERGFK 108 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G---~~~v~~l~gG~~ 108 (138)
...-|++|+||. -+..+|-.+++.. .+ -.++....++|.
T Consensus 99 ~~d~vff~NSGa-EA~EaAiKlARk~------~~~~~k~~Iia~~nsFH 140 (404)
T COG4992 99 FADRVFFCNSGA-EANEAALKLARKY------TGDPEKSKIIAFENSFH 140 (404)
T ss_pred cccEEEEcCCcH-HHHHHHHHHHHHH------cCCCCCcEEEEEcCCcC
Confidence 456799999987 5555665555322 22 225556666664
No 236
>PRK09273 hypothetical protein; Provisional
Probab=25.14 E-value=1.5e+02 Score=21.20 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=33.0
Q ss_pred HHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 10 GSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 10 ~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
.+++.+.++..+..++|+-+..+ ...++.+.++.......... ...+..|+.|++|.
T Consensus 19 ~~~L~~~L~~~G~eV~D~G~~~~-------~~~s~dYpd~a~~vA~~V~~-g~~d~GIliCGTGi 75 (211)
T PRK09273 19 YEALKKVADPKGHEVFNYGMYDE-------EDHQLTYVQNGIMASILLNS-KAVDFVVTGCGTGQ 75 (211)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCC-------CCCCCChHHHHHHHHHHHHc-CCCCEEEEEcCcHH
Confidence 45666777666789999987422 10113444444444443322 23467899999875
No 237
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=25.11 E-value=2.4e+02 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=24.5
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
-++||++|. .+..+|-+++. ...|-.+|..++|||.+|.
T Consensus 103 ~~~f~~sGs-eA~e~AlklAr------~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 103 KTAFFTTGA-EAVENAVKIAR------AYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred eEEEeCCcH-HHHHHHHHHHH------HhhCCCeEEEEcCCcCCcc
Confidence 567787775 34444434442 2246567888899998885
No 238
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=25.00 E-value=2.2e+02 Score=19.66 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|+..++-++|+-+... + + +.+.++...+...... .....-|++|.+|.
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-g~~~~GIliCGTGi 69 (171)
T TIGR01119 16 MEVSEFLKSKGYEVLDVGTYDF-T------R--THYPIFGKKVGEAVVS-GEADLGVCICGTGV 69 (171)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-C------C--CChHHHHHHHHHHHHc-CCCCEEEEEcCCcH
Confidence 3455666666788999886431 1 1 2334444444443322 23456799999985
No 239
>PRK09004 FMN-binding protein MioC; Provisional
Probab=24.98 E-value=1.9e+02 Score=18.98 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=15.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
.|+|....+ .+...|+.++. .+++.|+ ++.+++
T Consensus 5 ~I~ygS~tG-nae~~A~~l~~----~~~~~g~-~~~~~~ 37 (146)
T PRK09004 5 TLISGSTLG-GAEYVADHLAE----KLEEAGF-STETLH 37 (146)
T ss_pred EEEEEcCch-HHHHHHHHHHH----HHHHcCC-ceEEec
Confidence 344443222 44555544444 4455888 444443
No 240
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=24.88 E-value=1.4e+02 Score=25.50 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=26.1
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~ 107 (138)
..+..+|++|.... .....+. .+.+.|+..|..++.++-||.
T Consensus 631 ~~~a~ivvlcs~d~-~~~e~~~----~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 631 ENDVHVVGVSSLAA-GHKTLVP----ALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HcCCCEEEEeccch-hhHHHHH----HHHHHHHhcCCCCcEEEEeCC
Confidence 35567999997543 2222222 333345669987898888875
No 241
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=24.66 E-value=93 Score=19.72 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
.=|++|++|. - + +|+..||+
T Consensus 78 ~RVV~CdGg~-~----a-------------LGHPkvyI 97 (120)
T KOG3456|consen 78 GRVVACDGGT-P----A-------------LGHPKVYI 97 (120)
T ss_pred ceEEEecCCC-C----C-------------CCCCeEEE
Confidence 3477898876 2 1 89998883
No 242
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=24.65 E-value=2.1e+02 Score=22.71 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.-+++|.+|. .+..++-.++. ...|-.++..+.|||.+|..
T Consensus 131 ~~v~f~~sGs-eAve~AlklAr------~~tgr~~ii~~~~~yHG~t~ 171 (459)
T PRK06082 131 NRVLFAPGGT-SAIGMALKLAR------HITGNFKVVSLWDSFHGASL 171 (459)
T ss_pred CEEEECCCcH-HHHHHHHHHHH------HhcCCCEEEEEeCCCcCccH
Confidence 4688898876 34444433332 22465678888899988753
No 243
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=24.51 E-value=4.4e+02 Score=22.39 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh-cCCCeEEEEeCCCCCCcHHHHHHHHHHHH
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV-RGKDTLVFHCALSQVRGPTCAKRLANYLD 89 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~-~~~~~iv~~c~~g~~~~~~~~~~~~~~L~ 89 (138)
+++.+...- +.+.|++..+.... ..+.-+..+...-...+....... ....+++|+|++ ...+..++..|.
T Consensus 423 ~El~~~y~l-~vv~IPt~kp~~r~--~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t-----~~~se~L~~~L~ 494 (656)
T PRK12898 423 GELWSVYGL-PVVRIPTNRPSQRR--HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS-----VAASERLSALLR 494 (656)
T ss_pred HHHHHHHCC-CeEEeCCCCCccce--ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc-----HHHHHHHHHHHH
Confidence 455555554 47788887665322 112233333221111222222221 235789999954 344555555554
Q ss_pred HhhhhCCCccEEEeccchh
Q 032540 90 EVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 90 ~~l~~~G~~~v~~l~gG~~ 108 (138)
+.|+ .+..|.|...
T Consensus 495 ----~~gi-~~~~Lhg~~~ 508 (656)
T PRK12898 495 ----EAGL-PHQVLNAKQD 508 (656)
T ss_pred ----HCCC-CEEEeeCCcH
Confidence 4898 5667887653
No 244
>PRK10566 esterase; Provisional
Probab=24.12 E-value=2e+02 Score=19.97 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=17.5
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~ 102 (138)
.++||++.+.. ........++..|. ..|| .|..
T Consensus 27 ~p~vv~~HG~~-~~~~~~~~~~~~l~----~~G~-~v~~ 59 (249)
T PRK10566 27 LPTVFFYHGFT-SSKLVYSYFAVALA----QAGF-RVIM 59 (249)
T ss_pred CCEEEEeCCCC-cccchHHHHHHHHH----hCCC-EEEE
Confidence 46788887654 23222333444443 4788 4443
No 245
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.11 E-value=2.3e+02 Score=18.89 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 12 ~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
.+.+.|+..++-++|+-+..+ + + +.+.++...+...... .....-|++|.+|.
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-~~~~~GIliCGtGi 68 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSS-E------R--TDYPHYAKQVALAVAG-GEVDGGILICGTGI 68 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-C------C--CCHHHHHHHHHHHHHC-CCCceEEEEcCCcH
Confidence 455566656788999876431 1 1 3444444444433322 23456799999985
No 246
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=24.05 E-value=1.3e+02 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHhhhhCCCccEEEeccchhhhhhC
Q 032540 88 LDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 88 L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
+.+-..++|| +|..+...-..|.++
T Consensus 312 iaEY~RDmGy-~v~lmADSTSRWAEA 336 (588)
T COG1155 312 IAEYYRDMGY-DVALMADSTSRWAEA 336 (588)
T ss_pred HHHHHHhhhh-hhHHhhchHHHHHHH
Confidence 3344456666 666677777777654
No 247
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=23.99 E-value=2.3e+02 Score=19.54 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
+.+.+.|...++-++|+-+..+ + + +.+.++...+...... .....-|++|.+|.
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-g~~d~GIliCGTGi 69 (171)
T PRK12615 16 MAVSDFLKSKGYDVIDCGTYDH-T------R--THYPIFGKKVGEAVVN-GQADLGVCICGTGV 69 (171)
T ss_pred HHHHHHHHHCCCEEEEcCCCCC-C------C--CChHHHHHHHHHHHHc-CCCCEEEEEcCCcH
Confidence 3456666666788999876431 1 1 3344444444433322 23456799999985
No 248
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.95 E-value=2.8e+02 Score=22.04 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=27.6
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
+..-.-++||++|. .+..+|-+++.......-.-|-+++..++|||.+|..
T Consensus 113 p~~~~~v~f~~SGs-eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 113 PEGLKKVFYSDSGA-TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred CCCCCEEEEeCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccH
Confidence 43334689999886 4444444444322110001233467888999988753
No 249
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.83 E-value=1.4e+02 Score=21.11 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHhhhCCCCeEEEEecCCCcc------CCCccccce-ecCCc------chhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540 11 SQLLSLKRRPNIAVIDVRDDERS------YDGHITGSL-HYPSD------SFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (138)
Q Consensus 11 ~~~~~~l~~~~~~liDvR~~~e~------~~ghipgAi-~ip~~------~l~~~~~~~~~~~~~~~~iv~~c~~g~ 74 (138)
.++.+.+++.+..+||.|+...- .+..+|.+. ++-++ .+..++..+...-.+....|.+|....
T Consensus 109 ~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p 185 (213)
T PF04748_consen 109 RWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRP 185 (213)
T ss_dssp HHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SC
T ss_pred HHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCH
Confidence 44555666667999999986542 234555432 23332 223344444433356677788887654
No 250
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.79 E-value=2.9e+02 Score=22.03 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=25.8
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-.-|+||++|. .+..+|-+++..........|-.++..+.|||.+|.
T Consensus 106 ~~~~v~f~~sGs-EAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 106 GLSRCFYADNGS-SAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred CcCEEEEeCCcH-HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 334688899886 344444344422110000123346778899998874
No 251
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=23.75 E-value=2.3e+02 Score=22.27 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=25.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-++||.+|. .+..++-+++.. ..|-.+|..+.|||.+|.
T Consensus 102 ~~v~f~~SGs-eA~e~AlklAr~------~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 102 KKTIFVTTGA-EAVENAVKIARA------ATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred CEEEECCchH-HHHHHHHHHHHH------hhCCCeEEEECCCcCCcc
Confidence 3578888876 344444344422 246567888899998885
No 252
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=23.74 E-value=1.6e+02 Score=17.07 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=18.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
+.+|+++..-. ........++..| .+.|| .|+.++
T Consensus 16 k~~v~i~HG~~-eh~~ry~~~a~~L----~~~G~-~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFG-EHSGRYAHLAEFL----AEQGY-AVFAYD 50 (79)
T ss_pred CEEEEEeCCcH-HHHHHHHHHHHHH----HhCCC-EEEEEC
Confidence 56788886432 1222223344444 45998 676554
No 253
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=23.68 E-value=2.6e+02 Score=23.28 Aligned_cols=49 Identities=24% Similarity=0.404 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch-----hhhhhCCCCccc
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF-----KGWEASGKPVCR 119 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~-----~~w~~~g~p~~~ 119 (138)
...+|+|+|..|..+...+ -.+++.| .+.-|.. + -|| ++|...|.|...
T Consensus 343 ~~~sVlvhcsdGwDrT~qV-~SLaQll----LDP~yRT---i-~GFqsLIeKeWi~~GH~F~~ 396 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQV-SSLAQLL----LDPYYRT---I-KGFQSLIEKEWISFGHKFLD 396 (573)
T ss_pred CCCeEEEEccCCcchhHHH-HHHHHHH----hCchhhh---H-HHHHHHHHHHHHHcCCcHHH
Confidence 4489999999997554443 3455444 2233432 2 256 479888988664
No 254
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.66 E-value=3.1e+02 Score=20.30 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=45.2
Q ss_pred cCHHH-HHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH-----hcCCCeEEEEeCCCCCCcHH
Q 032540 8 ISGSQ-LLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-----VRGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 8 i~~~~-~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~-----~~~~~~iv~~c~~g~~~~~~ 79 (138)
.|+-+ +++..+.+ ..+++|++... .+++.++-.+.+-++.+. +.++..+|+.|.-|......
T Consensus 145 ~s~yd~Ik~N~~~GLHTl~lLDi~~~~----------r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v 214 (260)
T COG1798 145 TSPYDVIKENLERGLHTLVLLDIKEDE----------RYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVV 214 (260)
T ss_pred CcHHHHHHHhhhcCccceEEEEecccc----------cccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceE
Confidence 44443 44444433 57899999977 355554433322222222 45778899999877533322
Q ss_pred HHHHHHHHHHHhhhhCCCc-cEEEeccch
Q 032540 80 CAKRLANYLDEVKEDTGIN-SIFVLERGF 107 (138)
Q Consensus 80 ~~~~~~~~L~~~l~~~G~~-~v~~l~gG~ 107 (138)
.+..+. .|.. .+.|-+ ++.++-|..
T Consensus 215 ~ag~l~-~l~~--~Dfg~Plh~lvvp~~L 240 (260)
T COG1798 215 RAGTLE-ELAD--EDFGEPLHSLVVPGRL 240 (260)
T ss_pred EechHH-HHhh--cccCCCceEEEEeccc
Confidence 222222 2211 345544 566666654
No 255
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=23.50 E-value=3.2e+02 Score=20.40 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccc---hhhhhhCCCCcc
Q 032540 51 DKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG---FKGWEASGKPVC 118 (138)
Q Consensus 51 ~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG---~~~w~~~g~p~~ 118 (138)
.....+.+.+..++.|++.++.|.-.-......+...+ .+.|+ +|.++-|- ..+....|+|..
T Consensus 72 ~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~----~~~gi-~v~vIPGiSA~~aA~a~sG~~~~ 137 (287)
T PRK14994 72 QKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTC----REAGI-RVVPLPGPCAAITALSAAGLPSD 137 (287)
T ss_pred HHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHH----HHCCC-CEEEeCCHHHHHHHHHHcCCCCC
Confidence 34555666667888899998766522212222333344 44798 68887753 234455688743
No 256
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=23.48 E-value=3.1e+02 Score=24.19 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=27.8
Q ss_pred hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 60 ~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
...++|++|.|.+ ......++.+|. +.|+. ..+|.+...+.
T Consensus 441 ~~~g~PVLVgt~S-----ie~sE~ls~~L~----~~gi~-h~vLnak~~q~ 481 (896)
T PRK13104 441 GVRKQPVLVGTVS-----IEASEFLSQLLK----KENIK-HQVLNAKFHEK 481 (896)
T ss_pred HhCCCCEEEEeCc-----HHHHHHHHHHHH----HcCCC-eEeecCCCChH
Confidence 4688999999954 444555555554 49984 56788776644
No 257
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=23.29 E-value=1.7e+02 Score=17.20 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=25.0
Q ss_pred CeEEEEecCCCcc-----CCCccccceecC-CcchhHHHHHHH
Q 032540 21 NIAVIDVRDDERS-----YDGHITGSLHYP-SDSFTDKIFDLI 57 (138)
Q Consensus 21 ~~~liDvR~~~e~-----~~ghipgAi~ip-~~~l~~~~~~~~ 57 (138)
.+.+||+. +-| +.|.+.--+.+| -..+...+...+
T Consensus 4 eYqLidI~--DG~lsLM~e~G~~kdDl~lP~~~~l~~~I~~~f 44 (75)
T cd04469 4 QYRVLDIQ--DGSIVAMTETGDVKQGLPVIDQSNLWTRLKTAF 44 (75)
T ss_pred EEEEEEec--CCeEEEEcCCCCcccCccCCCcchHHHHHHHHH
Confidence 47899993 344 468888888899 677776666655
No 258
>PRK07036 hypothetical protein; Provisional
Probab=23.27 E-value=3e+02 Score=21.95 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=26.7
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC---CccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG---INSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G---~~~v~~l~gG~~~w~ 111 (138)
+.+-.-|++|++|. .+..+|-+++..... ..| -++|..++|+|.+|.
T Consensus 109 p~~~~~v~f~~sGs-eAve~AlklAr~~~~---~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 109 PGDLNHVFLTTGGS-TAVDSALRFVHYYFN---VRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred CCCcCEEEEeCCch-HHHHHHHHHHHHHHH---hcCCCCccEEEEEcCccCCcc
Confidence 33334688898886 344444344422210 123 356778889998885
No 259
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=23.23 E-value=2e+02 Score=22.55 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=26.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.-+++|++|. .+..++-+++. ...|-++|..+.|||.+|..
T Consensus 110 ~~v~f~~sGs-eA~e~AlklAr------~~tgr~~ii~~~~~yHG~t~ 150 (428)
T PRK12389 110 EKVRFVNSGT-EAVMTTIRVAR------AYTGRTKIIKFAGCYHGHSD 150 (428)
T ss_pred cEEEEeCCHH-HHHHHHHHHHH------HhhCCCEEEEECCCcCCChH
Confidence 4578888876 34444434442 22466678888999998853
No 260
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=23.14 E-value=1.3e+02 Score=23.83 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=24.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCcc--EEEeccchhh
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINS--IFVLERGFKG 109 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~--v~~l~gG~~~ 109 (138)
-.-|++|++|. -+..+|-.++... ..++.+.++ +..++|||.+
T Consensus 116 ~~rvff~nsGT-eAne~ALK~Ark~--~~~~~~~~~t~~Iaf~nsyHG 160 (433)
T KOG1401|consen 116 AERVFFCNSGT-EANETALKFARKF--TGKKHPEKKTKFIAFENSYHG 160 (433)
T ss_pred ccEEEEecCCc-HHHHHHHHHHHHh--hcccCCccceeEEEEecCcCC
Confidence 45689999987 4444444444322 223333334 6677888754
No 261
>PTZ00110 helicase; Provisional
Probab=23.12 E-value=4.2e+02 Score=21.63 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHhc-CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 53 IFDLIQEVR-GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 53 ~~~~~~~~~-~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
+..+...+. ....+||||++-. .+..++..|. ..|+ .+..+.|++.
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~-----~a~~l~~~L~----~~g~-~~~~ihg~~~ 412 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKK-----GADFLTKELR----LDGW-PALCIHGDKK 412 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChH-----HHHHHHHHHH----HcCC-cEEEEECCCc
Confidence 334443332 5678999997532 2444445553 4788 5667788764
No 262
>PTZ00346 histone deacetylase; Provisional
Probab=23.11 E-value=4e+02 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=12.2
Q ss_pred hhCCCccEEEeccchh
Q 032540 93 EDTGINSIFVLERGFK 108 (138)
Q Consensus 93 ~~~G~~~v~~l~gG~~ 108 (138)
+..+..-+.++.||+.
T Consensus 304 ~~~~~plv~vleGGY~ 319 (429)
T PTZ00346 304 RDLGIPMLALGGGGYT 319 (429)
T ss_pred HhcCCCEEEEeCCcCC
Confidence 3477766788999996
No 263
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=22.98 E-value=2e+02 Score=17.78 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=2.9
Q ss_pred CCccEEE
Q 032540 96 GINSIFV 102 (138)
Q Consensus 96 G~~~v~~ 102 (138)
+..++.+
T Consensus 59 ~~~~i~l 65 (145)
T PF12695_consen 59 DPDRIIL 65 (145)
T ss_dssp TCCEEEE
T ss_pred CCCcEEE
Confidence 3344443
No 264
>PRK06105 aminotransferase; Provisional
Probab=22.92 E-value=3.2e+02 Score=21.72 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=27.7
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
+.+-.-|++|++|. .+..+|-+++..........|-.+|..+.+||.+|...
T Consensus 106 p~~~~~v~f~~SGs-eAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~ 157 (460)
T PRK06105 106 PVPMSKVFFTNSGS-EANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIA 157 (460)
T ss_pred CCCCCEEEEeCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchh
Confidence 43334678888886 44444444432211000001334677888999998644
No 265
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=22.90 E-value=3.5e+02 Score=20.71 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=24.7
Q ss_pred HhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 59 EVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 59 ~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
.+|.-+.|-++|+++...+....+.+... +++.|++
T Consensus 155 ~~Pnak~Igv~Y~p~E~ns~~l~eelk~~----A~~~Gl~ 190 (322)
T COG2984 155 LLPNAKSIGVLYNPGEANSVSLVEELKKE----ARKAGLE 190 (322)
T ss_pred hCCCCeeEEEEeCCCCcccHHHHHHHHHH----HHHCCCE
Confidence 35777889888988876666665444444 4558985
No 266
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=22.87 E-value=1.1e+02 Score=24.04 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=25.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.-+++|.+|. .+..++-+++... .|-++|..++|||.+|.
T Consensus 118 ~~v~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 118 KRSALFNSGA-EAVENAVKIARSY------TGRQAVVVFDHAYHGRT 157 (443)
T ss_pred CEEEEeCCcH-HHHHHHHHHHHHh------hCCCeEEEECCCcCcCh
Confidence 3578888885 4444444444222 45567888899998885
No 267
>KOG2484 consensus GTPase [General function prediction only]
Probab=22.81 E-value=2.2e+02 Score=22.68 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=36.6
Q ss_pred HHHHhhhCCCCeE--EEEecCCCccCCCcc-------cc------ce----ecCCcchhHHHHHHHHHhcCCCeEEEEeC
Q 032540 11 SQLLSLKRRPNIA--VIDVRDDERSYDGHI-------TG------SL----HYPSDSFTDKIFDLIQEVRGKDTLVFHCA 71 (138)
Q Consensus 11 ~~~~~~l~~~~~~--liDvR~~~e~~~ghi-------pg------Ai----~ip~~~l~~~~~~~~~~~~~~~~iv~~c~ 71 (138)
.+|...++..+++ ++|.|++.--.--.+ .| -+ -||-+.+..|+..|... ..+|++-|.
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~---~ptv~fkas 214 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE---GPTVAFKAS 214 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh---CCcceeecc
Confidence 4566666655654 899998853211111 11 11 26667777788777543 345778787
Q ss_pred CCCCCc
Q 032540 72 LSQVRG 77 (138)
Q Consensus 72 ~g~~~~ 77 (138)
++.+.+
T Consensus 215 t~~~~~ 220 (435)
T KOG2484|consen 215 TQMQNS 220 (435)
T ss_pred cccccc
Confidence 765443
No 268
>PRK07482 hypothetical protein; Provisional
Probab=22.67 E-value=2.8e+02 Score=22.02 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=26.6
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC---CccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG---INSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G---~~~v~~l~gG~~~w~ 111 (138)
+.+-.-++||++|. -+..+|-+++..... ..| -++|..+.|||.+|.
T Consensus 108 p~~~~~v~f~~sGS-EAve~AlKlAr~~~~---~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 108 PAGMSKVYYGLSGS-DANETQIKLVWYYNN---VLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred CCCcCEEEEeCchH-HHHHHHHHHHHHHHH---hcCCCCCceEEEecCccCCcc
Confidence 43334678898886 444444444432210 124 345778889999874
No 269
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.54 E-value=3.6e+02 Score=21.39 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
.++..||||.+- ..+..++..|. ..|+ .+..+.||+.
T Consensus 225 ~~~~~IIF~~s~-----~~~e~la~~L~----~~g~-~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSR-----KKSEQVTASLQ----NLGI-AAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcH-----HHHHHHHHHHH----hcCC-CeeEeeCCCC
Confidence 456678999652 33444555554 4888 6777888864
No 270
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=22.53 E-value=1.2e+02 Score=23.79 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=24.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
-++||.+|. .+..+|-+++. ..-|-.+|..+.|||.+|.
T Consensus 103 ~~~f~~sGs-eA~e~AlklAr------~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 103 KTAFFTTGA-EAVENAVKIAR------AHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred eEEEeCChH-HHHHHHHHHHH------HhcCCCeEEEECCCcCCcc
Confidence 567777775 34444434442 2246567888999998884
No 271
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.16 E-value=2.7e+02 Score=23.20 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=27.8
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~ 113 (138)
+.+.||.|||-.. |. -+..+....++-.+.+|. ++..+.||...|.+.
T Consensus 293 ~g~gPi~vilvPT--re--la~Qi~~eaKkf~K~ygl-~~v~~ygGgsk~eQ~ 340 (731)
T KOG0339|consen 293 PGEGPIGVILVPT--RE--LASQIFSEAKKFGKAYGL-RVVAVYGGGSKWEQS 340 (731)
T ss_pred CCCCCeEEEEecc--HH--HHHHHHHHHHHhhhhccc-eEEEeecCCcHHHHH
Confidence 4678898888532 22 222222333332256777 666777888889653
No 272
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=22.06 E-value=2.2e+02 Score=22.40 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.++++|++|. -+..+|-+++. ..-|-.+|..+.|||.+|.
T Consensus 103 ~~~f~~~sGs-EA~e~AlklAr------~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 103 KLQFPGPSGA-DAVEAAIKLAK------TYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred cEEEeCCCHH-HHHHHHHHHHH------HhcCCCeEEEEcCCcCCch
Confidence 5677777775 34444434442 2246567888899998884
No 273
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=21.93 E-value=1.6e+02 Score=19.60 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=15.5
Q ss_pred HHHHHHHhc-CCCeEEEEeCCCCCCcHHHH
Q 032540 53 IFDLIQEVR-GKDTLVFHCALSQVRGPTCA 81 (138)
Q Consensus 53 ~~~~~~~~~-~~~~iv~~c~~g~~~~~~~~ 81 (138)
+..+++..+ .++.|+.+|.+|+.....+.
T Consensus 92 v~tFL~~~~~~gK~v~~F~T~ggs~~~~~~ 121 (156)
T PF12682_consen 92 VRTFLEQYDFSGKTVIPFCTSGGSGFGNSL 121 (156)
T ss_dssp HHHHHHCTTTTTSEEEEEEE-SS--CHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEeeCCCChhHHH
Confidence 445544432 46889999987763333444
No 274
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.92 E-value=2.5e+02 Score=21.81 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
....+++||++- ..+..++..|. ..|+ .+..+.|++.
T Consensus 244 ~~~~~lVF~~s~-----~~~~~l~~~L~----~~~~-~~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTR-----ERVHELAGWLR----KAGI-NCCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCCh-----HHHHHHHHHHH----hCCC-CEEEecCCCC
Confidence 456789999752 22444445554 4787 6788898874
No 275
>PRK08105 flavodoxin; Provisional
Probab=21.90 E-value=2.4e+02 Score=18.56 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
-.|+|+...+ .+...|+.++..| .+.|+ .+.+++
T Consensus 4 i~I~YgS~tG-nte~~A~~l~~~l----~~~g~-~~~~~~ 37 (149)
T PRK08105 4 VGIFVGTVYG-NALLVAEEAEAIL----TAQGH-EVTLFE 37 (149)
T ss_pred EEEEEEcCch-HHHHHHHHHHHHH----HhCCC-ceEEec
Confidence 3566664443 4555555555444 55888 455554
No 276
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.79 E-value=3.6e+02 Score=20.36 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=33.8
Q ss_pred ecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 43 HYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 43 ~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
++..+.+...+..+.. -++.+.|++.-++.+ -+..+...++..|++ +++.+ .|++.-+++.
T Consensus 79 ~~~~~~~~~~l~~~~~-~~~vk~vvL~inSPG-G~v~as~~i~~~l~~-l~~~~--PV~v~v~~~A 139 (317)
T COG0616 79 FIGGDDIEEILRAARA-DPSVKAVVLRINSPG-GSVVASELIARALKR-LRAKK--PVVVSVGGYA 139 (317)
T ss_pred cccHHHHHHHHHHHhc-CCCCceEEEEEECcC-CchhHHHHHHHHHHH-HhhcC--CEEEEECCee
Confidence 3444444444444432 145677888877766 345566666666654 34444 4666666553
No 277
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=21.58 E-value=2.3e+02 Score=22.81 Aligned_cols=30 Identities=10% Similarity=0.350 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540 82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116 (138)
Q Consensus 82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p 116 (138)
..++.+++. .|. +|.++-..+..|..+..+
T Consensus 254 ~tiAEyfrd----~G~-~Vll~~DslTr~A~A~rE 283 (455)
T PRK07960 254 TRIAEDFRD----RGQ-HVLLIMDSLTRYAMAQRE 283 (455)
T ss_pred HHHHHHHHH----cCC-CeEEEecchhHHHHHHHH
Confidence 345566644 897 888777789888766443
No 278
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=21.56 E-value=2.7e+02 Score=19.32 Aligned_cols=20 Identities=0% Similarity=-0.217 Sum_probs=13.7
Q ss_pred cCCCeEEEEeCCCCCCcHHH
Q 032540 61 RGKDTLVFHCALSQVRGPTC 80 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~ 80 (138)
....-|.+||..|......|
T Consensus 19 ~~~Gli~VYtGdGKGKTTAA 38 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSV 38 (178)
T ss_pred CCCCEEEEEeCCCCCchHHH
Confidence 45577999999887444333
No 279
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=21.54 E-value=2.8e+02 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=18.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
+++|++|.+...........++..|. +.|| +|+.++
T Consensus 87 ~~~iv~lHG~~~~~~~~~~~~~~~l~----~~g~-~v~~~D 122 (349)
T PLN02385 87 KAAVCFCHGYGDTCTFFFEGIARKIA----SSGY-GVFAMD 122 (349)
T ss_pred CeEEEEECCCCCccchHHHHHHHHHH----hCCC-EEEEec
Confidence 56788887644222222233334443 3788 666554
No 280
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.51 E-value=2.2e+02 Score=19.56 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=4.6
Q ss_pred eEEEEeCC
Q 032540 65 TLVFHCAL 72 (138)
Q Consensus 65 ~iv~~c~~ 72 (138)
.|.|||.+
T Consensus 2 ~i~V~~~s 9 (178)
T TIGR00730 2 TVCVYCGS 9 (178)
T ss_pred EEEEECcC
Confidence 45566654
No 281
>PRK05569 flavodoxin; Provisional
Probab=21.49 E-value=2.3e+02 Score=17.99 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=19.6
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
+++++++++..|. ....+...+...| +..|++
T Consensus 82 ~~K~v~~f~t~g~-~~~~~~~~~~~~l----~~~g~~ 113 (141)
T PRK05569 82 ENKKCILFGSYGW-DNGEFMKLWKDRM----KDYGFN 113 (141)
T ss_pred CCCEEEEEeCCCC-CCCcHHHHHHHHH----HHCCCe
Confidence 5789999998776 4333443344444 458884
No 282
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.43 E-value=3.4e+02 Score=19.93 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (138)
Q Consensus 53 ~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w 110 (138)
+....+.+.+.+.|++|. .| ++...+..+...| ..+|. ++..+.+....|
T Consensus 120 l~~av~~L~~A~rI~~~G-~g--~S~~vA~~~~~~l----~~ig~-~~~~~~d~~~~~ 169 (281)
T COG1737 120 LERAVELLAKARRIYFFG-LG--SSGLVASDLAYKL----MRIGL-NVVALSDTHGQL 169 (281)
T ss_pred HHHHHHHHHcCCeEEEEE-ec--hhHHHHHHHHHHH----HHcCC-ceeEecchHHHH
Confidence 333344455667777776 33 4555554455444 55998 666666544433
No 283
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=21.37 E-value=1.7e+02 Score=23.20 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=24.7
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
.+++++++|. .+..++-+++. ...|-.+|..+.|||.+|..
T Consensus 122 ~~~f~~~SGs-EAve~AlklAr------~~tgr~~Ii~~~~~yHG~t~ 162 (459)
T PRK06931 122 CLQFTGPSGA-DAVEAAIKLAK------TYTGRSNVISFSGGYHGMTH 162 (459)
T ss_pred eEEEeCCCcH-HHHHHHHHHHH------HhcCCCeEEEECCCcCCccH
Confidence 3556656765 34444434442 23566678888999988853
No 284
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.33 E-value=1.5e+02 Score=23.42 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
-|++|.+- ..+.|+...| ...|| +|..|.|.+..
T Consensus 333 siIFc~tk-----~ta~~l~~~m----~~~Gh-~V~~l~G~l~~ 366 (477)
T KOG0332|consen 333 SIIFCHTK-----ATAMWLYEEM----RAEGH-QVSLLHGDLTV 366 (477)
T ss_pred eEEEEeeh-----hhHHHHHHHH----HhcCc-eeEEeeccchh
Confidence 35668652 2244555545 45999 79999998754
No 285
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=21.31 E-value=65 Score=24.06 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=12.0
Q ss_pred CCeEEEEeCCCCCCcH
Q 032540 63 KDTLVFHCALSQVRGP 78 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~ 78 (138)
..||||+|..|..|+.
T Consensus 229 ~~PIvVHCsaGvGRTG 244 (303)
T PHA02742 229 EPPILVHCSAGLDRAG 244 (303)
T ss_pred CCCeEEECCCCCchhH
Confidence 4699999998864543
No 286
>PRK13604 luxD acyl transferase; Provisional
Probab=21.25 E-value=3.3e+02 Score=20.62 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=18.5
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
.++|++|.+=..+ ..-...++.+|.+ .|| +|..++
T Consensus 37 ~~~vIi~HGf~~~-~~~~~~~A~~La~----~G~-~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARR-MDHFAGLAEYLSS----NGF-HVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCC-hHHHHHHHHHHHH----CCC-EEEEec
Confidence 3455556532212 2224455666654 999 676665
No 287
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=21.19 E-value=1.4e+02 Score=23.22 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=24.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
.++++|++|. .+..+|-+++. ...|-++|..+++||.+|.
T Consensus 100 ~~~f~~~sGs-eA~e~AlklAr------~~tgr~~ii~~~~~yHG~t 139 (412)
T TIGR02407 100 KVQFPGPTGT-NAVESALKLAR------KVTGRSNVVSFTNAFHGMT 139 (412)
T ss_pred eEEEeCCCch-HHHHHHHHHHh------hhcCCCeEEEECCCcCCch
Confidence 4556667775 44444434442 2246567888899998884
No 288
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=21.11 E-value=2.5e+02 Score=18.39 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=28.0
Q ss_pred cCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEec
Q 032540 44 YPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (138)
Q Consensus 44 ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~ 104 (138)
++.+++...+..+.. ++..+.|+.-..+. ......-.+... |+..|+.+|.++.
T Consensus 79 v~~~~l~~~l~~~~~--~~~~~~v~i~aD~~-v~y~~vv~vm~~----l~~aG~~~v~L~t 132 (137)
T COG0848 79 VSLEELEAALAALAK--GKKNPRVVIRADKN-VKYGTVVKVMDL----LKEAGFKKVGLVT 132 (137)
T ss_pred ccHHHHHHHHHHHhc--CCCCceEEEEeCCC-CCHHHHHHHHHH----HHHcCCceEEEEe
Confidence 555666666666643 23444344443333 232222233333 4569999987654
No 289
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=21.09 E-value=3.3e+02 Score=19.61 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=28.3
Q ss_pred eecCCcchhHHHHHHHHHh-----cCCCeEEEE-eCCCCCCcH-HHHHHHHHHHHHhhhhCCCccEEEeccc
Q 032540 42 LHYPSDSFTDKIFDLIQEV-----RGKDTLVFH-CALSQVRGP-TCAKRLANYLDEVKEDTGINSIFVLERG 106 (138)
Q Consensus 42 i~ip~~~l~~~~~~~~~~~-----~~~~~iv~~-c~~g~~~~~-~~~~~~~~~L~~~l~~~G~~~v~~l~gG 106 (138)
.+-|...+.+.+..+...+ .+...+|.+ +..|+ -+. ..+..++..|. ..|. +|.+++..
T Consensus 76 ~~~~~~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g-~Gktt~a~nLA~~la----~~g~-~VllID~D 141 (274)
T TIGR03029 76 AYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSG-EGCSYIAANLAIVFS----QLGE-KTLLIDAN 141 (274)
T ss_pred ccCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCC-CCHHHHHHHHHHHHH----hcCC-eEEEEeCC
Confidence 3444444555555444332 233444444 44443 232 33434444443 4886 77777764
No 290
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=21.00 E-value=3.7e+02 Score=21.26 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=26.5
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~ 111 (138)
+.+-.-|++|.+|. -+..+|-+++..........|-.++..+.|||.+|.
T Consensus 103 p~~~~~v~f~~sGs-eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 103 PGGLNHVFFTNSGS-ESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred CCCCCEEEEeCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 33334678898886 344444344432210000013346778899998884
No 291
>PRK06936 type III secretion system ATPase; Provisional
Probab=20.96 E-value=1.5e+02 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCC
Q 032540 81 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGK 115 (138)
Q Consensus 81 ~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~ 115 (138)
+..++.+++. .|. +|.++-..+..|..+..
T Consensus 240 a~tiAEyfrd----~G~-~Vll~~DslTR~A~A~R 269 (439)
T PRK06936 240 ATSIAEYFRD----QGK-RVLLLMDSVTRFARAQR 269 (439)
T ss_pred HHHHHHHHHH----cCC-CEEEeccchhHHHHHHH
Confidence 3455666654 897 88888889998876543
No 292
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.89 E-value=1.6e+02 Score=23.96 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCeEEEEeCCCCCCcHHHHH-HHHHHHHHhhh-hCCC----ccEEEecc---chhhhhhCCCCcc
Q 032540 62 GKDTLVFHCALSQVRGPTCAK-RLANYLDEVKE-DTGI----NSIFVLER---GFKGWEASGKPVC 118 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~-~~~~~L~~~l~-~~G~----~~v~~l~g---G~~~w~~~g~p~~ 118 (138)
+.+||.++|..|+|.-..... ++...|...|+ .-+| ..+.+++| |+-+|...++-+.
T Consensus 84 ~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG 149 (501)
T KOG1386|consen 84 KETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLG 149 (501)
T ss_pred CCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHH
Confidence 458999999999854433222 22223333233 2333 25677775 7889988765433
No 293
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=20.55 E-value=3.3e+02 Score=24.28 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (138)
Q Consensus 63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~ 109 (138)
..++||+|++ ...+..+...|. ...|+ ++..+.||+..
T Consensus 493 ~~KvLVF~~~-----~~t~~~L~~~L~---~~~Gi-~~~~ihG~~s~ 530 (956)
T PRK04914 493 SEKVLVICAK-----AATALQLEQALR---EREGI-RAAVFHEGMSI 530 (956)
T ss_pred CCeEEEEeCc-----HHHHHHHHHHHh---hccCe-eEEEEECCCCH
Confidence 5689999964 233444444552 24798 67788998753
No 294
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.54 E-value=2.3e+02 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (138)
Q Consensus 62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~ 108 (138)
....++|||++- ..+..++..|. ..|+ ++..+.|++.
T Consensus 256 ~~~k~LVF~nt~-----~~ae~l~~~L~----~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTK-----AFVERVARTLE----RHGY-RVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCH-----HHHHHHHHHHH----HcCC-CEEEEeCCCC
Confidence 356789999652 33444455554 4888 7888888864
No 295
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=20.51 E-value=3.6e+02 Score=19.88 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=15.2
Q ss_pred cCCCeEEEEeCCCCCCcHH
Q 032540 61 RGKDTLVFHCALSQVRGPT 79 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~ 79 (138)
.++..++|+|..|..|+..
T Consensus 153 ~~~~~vlVHC~~GvSRSat 171 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSAT 171 (285)
T ss_pred hCCCeEEEEcCCccchhHH
Confidence 5678999999999866643
No 296
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.41 E-value=1.6e+02 Score=20.79 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=11.2
Q ss_pred CcHHHHHHHHHHHHHhhhhCCCc
Q 032540 76 RGPTCAKRLANYLDEVKEDTGIN 98 (138)
Q Consensus 76 ~~~~~~~~~~~~L~~~l~~~G~~ 98 (138)
.+..+++.++..| +++||.
T Consensus 89 ~ar~aark~aRil----qkLgf~ 107 (200)
T KOG3302|consen 89 SARLAARKYARIL----QKLGFP 107 (200)
T ss_pred HHHHHHHHHHHHH----HHcCCC
Confidence 4444555555555 569995
No 297
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=20.34 E-value=67 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.1
Q ss_pred cCCCeEEEEeCCCCCCc
Q 032540 61 RGKDTLVFHCALSQVRG 77 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~ 77 (138)
....|+||+|..|..|+
T Consensus 168 ~~~~pivVhc~~G~gRs 184 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRS 184 (235)
T ss_dssp TTSSEEEEESSSSSHHH
T ss_pred CCccceEeecccccccc
Confidence 35689999999887444
No 298
>PRK07483 hypothetical protein; Provisional
Probab=20.17 E-value=2.8e+02 Score=21.89 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=26.9
Q ss_pred cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (138)
Q Consensus 61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~ 112 (138)
+..-.-++||++|. -+..+|-+++.........-|-.++..++++|.+|..
T Consensus 87 p~~~~~v~f~~sGs-EAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ 137 (443)
T PRK07483 87 PAGLEHVYFVSGGS-EAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTL 137 (443)
T ss_pred CCCCCEEEEcCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCH
Confidence 33334678898886 3444443444322100000233457788899988853
No 299
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.14 E-value=4e+02 Score=22.38 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=32.4
Q ss_pred EEEeCCCCCCcHHH--HHHHHHHHHHhhhhCCCc-cEEE-----eccch--hhhhhCCCCccccCC
Q 032540 67 VFHCALSQVRGPTC--AKRLANYLDEVKEDTGIN-SIFV-----LERGF--KGWEASGKPVCRCTD 122 (138)
Q Consensus 67 v~~c~~g~~~~~~~--~~~~~~~L~~~l~~~G~~-~v~~-----l~gG~--~~w~~~g~p~~~~~~ 122 (138)
++++.||.++.... +..-+..|.++|...|++ .|+- ..||- ..|.+.|.|..++.-
T Consensus 397 LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRl 462 (600)
T TIGR01651 397 LLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRL 462 (600)
T ss_pred EEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCccc
Confidence 56667776555422 222345666777888885 2221 23553 579999888665443
Done!