BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032541
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
 pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
          Length = 977

 Score = 30.0 bits (66), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 43  PDTADREKGRYTLIRDPENFQF----GIYDKPLP 72
           P  AD+EKG+   I  PE + +    G  D PLP
Sbjct: 776 PPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLP 809


>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
           And The C-Type Lectin Domains From Lecticans: Evidence
           For A Cross-Linking Role For Tenascins
          Length = 283

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 11  EGLKTGLELVKSVSDKHLDLLRPSARYSIS----KAPDTADREKGRYTL-IRDPENFQFG 65
           EG KT   L   +S   +  LRP +RY +S    +  + +D    ++T  I  P+N + G
Sbjct: 55  EGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVG 114


>pdb|3ZTH|A Chain A, Crystal Structure Of Stu0660 Of Streptococcus Thermophilus
 pdb|3ZTH|B Chain B, Crystal Structure Of Stu0660 Of Streptococcus Thermophilus
          Length = 350

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADR 48
           ++Q   +G  E +   +EL++   ++H++L      Y +   P T D+
Sbjct: 106 VNQVDIVGHLEKINEQVELIEEAXNRHINLNCGQVEYHLENLPLTLDQ 153


>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
 pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
          Length = 485

 Score = 26.9 bits (58), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 2   DQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKG 51
           D ++ I +TE       ++K+ SD+    +     Y +S A  T+D EKG
Sbjct: 372 DNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKG 421


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.145    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,888,325
Number of Sequences: 62578
Number of extensions: 157359
Number of successful extensions: 310
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 4
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)