BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032541
         (138 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA
           PE=2 SV=2
          Length = 158

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 68  DKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACS 126
           +  LPC G G+GWF F++GF+F  + WY G F+        D RE+AG  A +IA    S
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVT--SVDHREKAGYVACSIA----S 140

Query: 127 VVMLVIVVFRL 137
           VV L+ V+  +
Sbjct: 141 VVYLIAVMLGM 151


>sp|Q54B29|Y3934_DICDI Uncharacterized membrane protein DDB_G0293934 OS=Dictyostelium
            discoideum GN=DDB_G0293934 PE=4 SV=1
          Length = 1713

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 75   GCGVGWFSFLLGFVFPLMWYYGTFLYF 101
            G G  W  F+ GF  P+ W  G+F  F
Sbjct: 1410 GFGPAWTMFVFGFFIPICWIIGSFYLF 1436


>sp|Q8RM03|ACXB_XANP2 Acetone carboxylase alpha subunit OS=Xanthobacter autotrophicus
          (strain ATCC BAA-1158 / Py2) GN=acxB PE=1 SV=1
          Length = 776

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 1  MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADRE 49
          +DQST  G T G+  G E +K   D+ +   + + RY+  K  +  +RE
Sbjct: 5  VDQSTLAGATRGIVRGGETLKEHRDRLMAATKATGRYAGLKTLELRERE 53


>sp|Q9CWU2|ZDH13_MOUSE Palmitoyltransferase ZDHHC13 OS=Mus musculus GN=Zdhhc13 PE=1 SV=2
          Length = 622

 Score = 28.9 bits (63), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 74  FGCGVGWFSFLLGFVFPLMWY-YGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVI 132
           FG    +  FLL       W  YG+F+Y+ NHC    +E  GL       +ACS  +L I
Sbjct: 465 FGNHHHYIFFLLSLSMVCDWIIYGSFVYWSNHCATTFKED-GLWTYLNQIVACSPWVLYI 523


>sp|Q4R690|ZDH13_MACFA Palmitoyltransferase ZDHHC13 OS=Macaca fascicularis GN=ZDHHC13 PE=2
           SV=1
          Length = 622

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 95  YGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVV 134
           YG+F+Y+ NHC    +E  GL       +ACS  +L I++
Sbjct: 487 YGSFIYWSNHCATTFKED-GLWTYLNQIVACSPWVLYILM 525


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.142    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,991,352
Number of Sequences: 539616
Number of extensions: 2087646
Number of successful extensions: 5335
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5328
Number of HSP's gapped (non-prelim): 11
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)