Query 032541
Match_columns 138
No_of_seqs 56 out of 58
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 03:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dw3_A Intrinsic membrane prot 37.1 20 0.00068 25.1 2.3 19 83-101 38-56 (77)
2 1y29_A Huwentoxin-X; A double- 32.3 13 0.00045 21.8 0.6 7 70-76 15-21 (28)
3 2nrg_A Intrinsic membrane prot 27.2 33 0.0011 24.3 2.1 19 83-101 39-57 (82)
4 3s8f_C Cytochrome C oxidase po 25.2 79 0.0027 18.9 3.2 21 81-101 11-31 (34)
5 1bts_A BAND 3 anion transport 16.2 1E+02 0.0035 17.2 2.2 15 114-128 6-20 (26)
6 1v54_M VIIIB, IX, cytochrome C 13.8 2.3E+02 0.0077 17.8 3.6 29 106-134 3-31 (46)
7 3l1l_A Arginine/agmatine antip 13.2 4.5E+02 0.015 20.0 6.4 8 105-112 376-383 (445)
8 2k1k_A Ephrin type-A receptor 12.9 2.4E+02 0.0081 16.6 3.6 13 111-123 4-16 (38)
9 3d31_C Sulfate/molybdate ABC t 12.6 2.3E+02 0.0077 21.2 3.9 38 87-124 52-93 (295)
10 3gia_A Uncharacterized protein 12.2 4E+02 0.014 20.4 5.3 53 78-131 185-242 (444)
No 1
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=37.12 E-value=20 Score=25.13 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHHHHhh
Q 032541 83 FLLGFVFPLMWYYGTFLYF 101 (138)
Q Consensus 83 FllGFf~~ipWYvgafl~~ 101 (138)
|.+.|++...|++|.+|+-
T Consensus 38 ~~~~~~lv~l~~iG~~LPE 56 (77)
T 2dw3_A 38 FGTLLLIGFFRVVGRMLPI 56 (77)
T ss_dssp HHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3344444588888888876
No 2
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=32.31 E-value=13 Score=21.83 Aligned_cols=7 Identities=43% Similarity=1.288 Sum_probs=6.1
Q ss_pred CCccccc
Q 032541 70 PLPCFGC 76 (138)
Q Consensus 70 rLPCcG~ 76 (138)
+.||||.
T Consensus 15 riPCCG~ 21 (28)
T 1y29_A 15 KIPCCGV 21 (28)
T ss_dssp SCCBSSC
T ss_pred ccccccc
Confidence 8999984
No 3
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=27.19 E-value=33 Score=24.26 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHHHHhh
Q 032541 83 FLLGFVFPLMWYYGTFLYF 101 (138)
Q Consensus 83 FllGFf~~ipWYvgafl~~ 101 (138)
|.+.|++...|++|.+|+-
T Consensus 39 l~~~~~lv~l~~iG~~LPE 57 (82)
T 2nrg_A 39 FGTLLLIGFFRVVGRMLPI 57 (82)
T ss_dssp HHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3344444588999988876
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=25.18 E-value=79 Score=18.89 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 032541 81 FSFLLGFVFPLMWYYGTFLYF 101 (138)
Q Consensus 81 flFllGFf~~ipWYvgafl~~ 101 (138)
..|++|.|+-+.|..--++++
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHeeee
Confidence 468999999999986665554
No 5
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=16.24 E-value=1e+02 Score=17.20 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHH
Q 032541 114 GLAASAIAAMACSVV 128 (138)
Q Consensus 114 Gl~AcaIAa~v~tia 128 (138)
.+++++++.++|++.
T Consensus 6 ~i~s~ai~Gi~f~lf 20 (26)
T 1bts_A 6 LLISTAVQGILFALL 20 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 577899999988763
No 6
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=13.79 E-value=2.3e+02 Score=17.81 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=23.7
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 032541 106 RKDPRERAGLAASAIAAMACSVVMLVIVV 134 (138)
Q Consensus 106 r~DpRErpGl~AcaIAa~v~tia~~Il~~ 134 (138)
.+-||++-|-+=.+|+-.+|.+.+++-.+
T Consensus 3 S~Pp~~~~s~~E~aigl~v~f~~~L~Pag 31 (46)
T 1v54_M 3 AKPAKTPTSPKEQAIGLSVTFLSFLLPAG 31 (46)
T ss_dssp BCCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 35689999999999998888888887655
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=13.23 E-value=4.5e+02 Score=19.99 Aligned_cols=8 Identities=0% Similarity=-0.259 Sum_probs=4.1
Q ss_pred ccCCcccc
Q 032541 105 CRKDPRER 112 (138)
Q Consensus 105 ~r~DpREr 112 (138)
.++.||+|
T Consensus 376 r~~~~~~r 383 (445)
T 3l1l_A 376 GHGHFGKA 383 (445)
T ss_dssp HSSSSGGG
T ss_pred hhcCcccc
Confidence 34455555
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=12.92 E-value=2.4e+02 Score=16.61 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=5.7
Q ss_pred cchhHHHHHHHHH
Q 032541 111 ERAGLAASAIAAM 123 (138)
Q Consensus 111 ErpGl~AcaIAa~ 123 (138)
+.+|+-.-+||.+
T Consensus 4 ~~~~ls~GaIAGi 16 (38)
T 2k1k_A 4 VSRGLTGGEIVAV 16 (38)
T ss_dssp SSTTCCHHHHHHH
T ss_pred CCCCCCCCceeee
Confidence 3344444444444
No 9
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=12.59 E-value=2.3e+02 Score=21.17 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=16.3
Q ss_pred HHHhHHHHHHHH--Hhhccccc--CCcccchhHHHHHHHHHH
Q 032541 87 FVFPLMWYYGTF--LYFGNHCR--KDPRERAGLAASAIAAMA 124 (138)
Q Consensus 87 Ff~~ipWYvgaf--l~~~~~~r--~DpRErpGl~AcaIAa~v 124 (138)
+++|+.|-+..- .-+-|+.+ .|++=..++.-+.+-+++
T Consensus 52 ~~~P~~~~~~~s~~~~l~ny~~~~~~~~~~~~l~nTl~~~~~ 93 (295)
T 3d31_C 52 IFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFL 93 (295)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 344655544321 12333433 265544555444444443
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=12.21 E-value=4e+02 Score=20.36 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH--hhcccccCCccc---chhHHHHHHHHHHHHHHHHH
Q 032541 78 VGWFSFLLGFVFPLMWYYGTFL--YFGNHCRKDPRE---RAGLAASAIAAMACSVVMLV 131 (138)
Q Consensus 78 iGWflFllGFf~~ipWYvgafl--~~~~~~r~DpRE---rpGl~AcaIAa~v~tia~~I 131 (138)
-||..++.|+...+.=|.|.=. ....-. +||+. |.-..+..+..+++.+..++
T Consensus 185 ~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~-k~P~r~ip~ai~~~~~~~~~~y~~~~~~ 242 (444)
T 3gia_A 185 SAVSGMIFASAIFFLSYMGFGVITNASEHI-ENPKKNVPRAIFISILIVMFVYVGVAIS 242 (444)
T ss_dssp HHHHHHHHHHHHGGGGGTHHHHHHTTGGGB-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHc-cCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3676677776554444444322 221122 58865 34444555555555544443
Done!