Query 032541
Match_columns 138
No_of_seqs 56 out of 58
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 03:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032541.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032541hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eova2 d.104.1.1 (A:205-557) 25.2 5.7 0.00042 29.6 -0.5 10 71-80 316-325 (353)
2 d1b8aa2 d.104.1.1 (A:104-438) 24.9 5.8 0.00042 29.2 -0.5 11 70-80 297-307 (335)
3 d1c0aa3 d.104.1.1 (A:107-287,A 22.6 8.4 0.00062 28.9 -0.0 16 71-86 287-305 (346)
4 d1e1oa2 d.104.1.1 (A:161-502) 22.6 8.5 0.00062 28.5 -0.0 17 70-86 308-327 (342)
5 d1n9wa2 d.104.1.1 (A:111-414) 20.2 8.2 0.0006 28.0 -0.5 11 70-80 274-284 (304)
6 d1nnha_ d.104.1.1 (A:) Hypothe 19.8 8.5 0.00062 28.6 -0.5 16 71-86 254-273 (293)
7 d2ih2a1 c.66.1.27 (A:21-243) D 18.9 12 0.00089 24.3 0.2 6 72-77 26-31 (223)
8 d1y29a_ g.3.6.2 (A:) Huwentoxi 18.7 18 0.0013 19.7 0.8 7 70-76 15-21 (28)
9 d3cx5d2 f.23.11.1 (D:261-307) 18.0 25 0.0018 20.8 1.5 23 107-129 3-25 (47)
10 d1l0wa3 d.104.1.1 (A:105-294,A 18.0 12 0.00089 28.2 -0.0 16 71-86 296-314 (356)
No 1
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.17 E-value=5.7 Score=29.58 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=8.8
Q ss_pred CcccccchHH
Q 032541 71 LPCFGCGVGW 80 (138)
Q Consensus 71 LPCcG~GiGW 80 (138)
-||+|+|+|+
T Consensus 316 PP~~G~glGi 325 (353)
T d1eova2 316 PPHAGGGIGL 325 (353)
T ss_dssp CCEEEEEEEH
T ss_pred CCCceeeeHH
Confidence 4899999995
No 2
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=24.92 E-value=5.8 Score=29.16 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=9.5
Q ss_pred CCcccccchHH
Q 032541 70 PLPCFGCGVGW 80 (138)
Q Consensus 70 rLPCcG~GiGW 80 (138)
--||+|+|+|+
T Consensus 297 ~Pp~~G~glGi 307 (335)
T d1b8aa2 297 MPPHGGFGLGA 307 (335)
T ss_dssp CCCEEEEEEEH
T ss_pred CCCCceeeeHH
Confidence 55999999996
No 3
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=22.59 E-value=8.4 Score=28.91 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=11.4
Q ss_pred CcccccchHH---HHHHHH
Q 032541 71 LPCFGCGVGW---FSFLLG 86 (138)
Q Consensus 71 LPCcG~GiGW---flFllG 86 (138)
-||.|+|+|. +.+++|
T Consensus 287 PP~~G~glGldRL~m~l~g 305 (346)
T d1c0aa3 287 PPHAGLAFGLDRLTMLLTG 305 (346)
T ss_dssp CCEEEEEEEHHHHHHHHHT
T ss_pred CCceeEeEHHHHHHHHHcC
Confidence 4999999994 444444
No 4
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=22.57 E-value=8.5 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=11.8
Q ss_pred CCcccccchHH---HHHHHH
Q 032541 70 PLPCFGCGVGW---FSFLLG 86 (138)
Q Consensus 70 rLPCcG~GiGW---flFllG 86 (138)
--||+|+|+|. +.+++|
T Consensus 308 ~pPh~G~glG~dRlvm~l~g 327 (342)
T d1e1oa2 308 LPPTAGLGIGIDRMIMLFTN 327 (342)
T ss_dssp CCSEEEEEEEHHHHHHHHHT
T ss_pred CCCccchhHHHHHHHHHHhC
Confidence 34999999984 444444
No 5
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=20.23 E-value=8.2 Score=27.98 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=9.4
Q ss_pred CCcccccchHH
Q 032541 70 PLPCFGCGVGW 80 (138)
Q Consensus 70 rLPCcG~GiGW 80 (138)
--||+|+|+|.
T Consensus 274 ~PP~~G~glGi 284 (304)
T d1n9wa2 274 MPPHGGFAIGA 284 (304)
T ss_dssp CCSEEEEEEEH
T ss_pred CCCCceeehHH
Confidence 56999999994
No 6
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=19.77 E-value=8.5 Score=28.58 Aligned_cols=16 Identities=44% Similarity=1.005 Sum_probs=11.3
Q ss_pred C-cccccchHH---HHHHHH
Q 032541 71 L-PCFGCGVGW---FSFLLG 86 (138)
Q Consensus 71 L-PCcG~GiGW---flFllG 86 (138)
+ ||+|+|+|+ +.+++|
T Consensus 254 mPP~~G~glGiDRL~m~l~g 273 (293)
T d1nnha_ 254 LKPSAGAGIGVERLVRFIVG 273 (293)
T ss_dssp CCCEEEEEEEHHHHHHHHHT
T ss_pred CCCCCeEeehHHHHHHHHhC
Confidence 5 899999985 444444
No 7
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=18.87 E-value=12 Score=24.31 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=5.5
Q ss_pred cccccc
Q 032541 72 PCFGCG 77 (138)
Q Consensus 72 PCcG~G 77 (138)
||||.|
T Consensus 26 p~~G~G 31 (223)
T d2ih2a1 26 PACAHG 31 (223)
T ss_dssp ETCTTC
T ss_pred CCCchH
Confidence 899999
No 8
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=18.74 E-value=18 Score=19.74 Aligned_cols=7 Identities=43% Similarity=1.288 Sum_probs=5.9
Q ss_pred CCccccc
Q 032541 70 PLPCFGC 76 (138)
Q Consensus 70 rLPCcG~ 76 (138)
..||||.
T Consensus 15 kipccgv 21 (28)
T d1y29a_ 15 KIPCCGV 21 (28)
T ss_dssp SCCBSSC
T ss_pred cccceee
Confidence 6899985
No 9
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.03 E-value=25 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=17.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHH
Q 032541 107 KDPRERAGLAASAIAAMACSVVM 129 (138)
Q Consensus 107 ~DpRErpGl~AcaIAa~v~tia~ 129 (138)
+|-|.|-|+=|..|.+++++++.
T Consensus 3 hDeRK~mg~K~~~i~s~l~~~~~ 25 (47)
T d3cx5d2 3 HDERKRLGLKTVIILSSLYLLSI 25 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999998888887766554
No 10
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=17.97 E-value=12 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=11.6
Q ss_pred CcccccchHH---HHHHHH
Q 032541 71 LPCFGCGVGW---FSFLLG 86 (138)
Q Consensus 71 LPCcG~GiGW---flFllG 86 (138)
-||.|+|+|. +.+++|
T Consensus 296 PP~~G~glGldRLlm~l~g 314 (356)
T d1l0wa3 296 PPHGGIAWGLDRLLALMTG 314 (356)
T ss_dssp CCEEEEEEEHHHHHHHHHT
T ss_pred CCcceEEEcHHHHHHHHcC
Confidence 4999999995 444444
Done!