BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032550
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Query: 51 SWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAG 110
SWC+ KP D+ L NI+Y+C Q G+DC PIQPGG+CF P+++ +HA++ MNL+Y+ AG
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQ-GIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 111 KNYWNCHFNGTGLIVTQNPSWGTCKYPA 138
+N WNC F+ T + NPS+G C +P+
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNFPS 98
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 82 IQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNC--------------HFNGTGLIVTQ 127
I PGG+ P I H MNL+ + A + Y F G+ +T
Sbjct: 205 IIPGGAVAKP-FITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTH 263
Query: 128 NPSWGTCKY 136
NP + TC++
Sbjct: 264 NPEFTTCEF 272
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 82 IQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNC--------------HFNGTGLIVTQ 127
I PGG+ P I H MNL+ + A + Y F G+ +T
Sbjct: 205 IIPGGAVAKP-FITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTH 263
Query: 128 NPSWGTCKY 136
NP + TC++
Sbjct: 264 NPEFTTCEF 272
>pdb|3DUZ|A Chain A, Crystal Structure Of The Postfusion Form Of Baculovirus
Fusion Protein Gp64
Length = 487
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 70 YSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFN 119
++ RQ C I+ + NP+S+ N Y KN WNC FN
Sbjct: 199 FTTRQIKAACLLIKDDKN--NPESVTREHCLIDNDIY-DLSKNTWNCKFN 245
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site:e498t Mutant
Length = 513
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116e Mutant
Length = 513
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116a Mutant
Length = 513
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116n Mutant
Length = 513
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein
From Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498d Mutant
Length = 513
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of
Cota-Laccase: I494a Mutant
Length = 513
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 37 GRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQ 74
G E +RNE V W PST ++H I +S Q
Sbjct: 57 GPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQ 94
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 27 HAELSSTHSNGRVQEER--RNEGVVTSWCIAKPSTDDES 63
HAE SS+ +G ++E R GVVT+W + DD+S
Sbjct: 193 HAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQS 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,172,013
Number of Sequences: 62578
Number of extensions: 159985
Number of successful extensions: 287
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 14
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)