Query 032550
Match_columns 138
No_of_seqs 139 out of 711
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 1.5E-34 3.3E-39 203.1 8.9 85 51-136 1-85 (85)
2 PF07983 X8: X8 domain; Inter 99.9 5.2E-27 1.1E-31 163.0 6.3 73 51-123 1-78 (78)
3 PF07172 GRP: Glycine rich pro 55.1 11 0.00024 27.0 2.3 20 8-28 6-25 (95)
4 PF12273 RCR: Chitin synthesis 53.8 5.7 0.00012 29.2 0.7 15 10-24 5-19 (130)
5 PF11395 DUF2873: Protein of u 36.7 46 0.00099 20.6 2.6 15 8-22 17-31 (43)
6 PF11037 Musclin: Insulin-resi 35.7 37 0.00079 26.0 2.6 21 1-21 1-21 (132)
7 COG3017 LolB Outer membrane li 30.4 66 0.0014 26.4 3.4 21 6-27 5-25 (206)
8 PF08113 CoxIIa: Cytochrome c 29.6 82 0.0018 18.9 2.9 14 10-23 13-26 (34)
9 PF03954 Lectin_N: Hepatic lec 28.1 61 0.0013 25.0 2.7 20 8-27 35-54 (138)
10 PRK00059 prsA peptidylprolyl i 26.6 71 0.0015 26.5 3.1 25 1-26 1-25 (336)
11 PRK14125 cell division suppres 23.1 1.3E+02 0.0028 21.7 3.5 41 46-86 42-84 (103)
12 PF03058 Sar8_2: Sar8.2 family 21.8 55 0.0012 23.7 1.3 27 9-35 7-33 (93)
13 PRK10299 PhoPQ regulatory prot 20.9 1.2E+02 0.0025 19.5 2.5 22 1-22 1-22 (47)
14 TIGR03302 OM_YfiO outer membra 20.8 66 0.0014 24.5 1.7 18 10-27 3-20 (235)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=100.00 E-value=1.5e-34 Score=203.10 Aligned_cols=85 Identities=46% Similarity=1.048 Sum_probs=82.9
Q ss_pred cceeeCCCCChHHHHHHHHhHhcCCCCCCcccCCCCCCCCCCchhhhHhHHHHHHHHHhCCCCCcccCCceeeEEecCCC
Q 032550 51 SWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPS 130 (138)
Q Consensus 51 lwCVak~~~~~~~l~~~ldyaCg~~~~dCs~I~~gg~C~~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~itt~dpS 130 (138)
+|||+|+++++++|+++|||||+++ +||++|++||+||.|+++++|||||||+|||++++..++|||+|+|++++.||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 032550 131 WGTCKY 136 (138)
Q Consensus 131 ~~sC~f 136 (138)
.++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999987
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.94 E-value=5.2e-27 Score=162.97 Aligned_cols=73 Identities=44% Similarity=0.928 Sum_probs=60.5
Q ss_pred cceeeCCCCChHHHHHHHHhHhcCCCCCCcccCCCCC-----CCCCCchhhhHhHHHHHHHHHhCCCCCcccCCceee
Q 032550 51 SWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGS-----CFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGL 123 (138)
Q Consensus 51 lwCVak~~~~~~~l~~~ldyaCg~~~~dCs~I~~gg~-----C~~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~ 123 (138)
+|||+++++++++|+++|||||+++++||++|++||+ .|++|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999998899999999998 344444499999999999999999999999999986
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.12 E-value=11 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCc
Q 032550 8 LAFFLLALALLFWFADCSGHA 28 (138)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (138)
+.|+.|.|++||++ .+++.+
T Consensus 6 ~llL~l~LA~lLli-sSevaa 25 (95)
T PF07172_consen 6 FLLLGLLLAALLLI-SSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHH-Hhhhhh
Confidence 33444444444433 555544
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.83 E-value=5.7 Score=29.22 Aligned_cols=15 Identities=20% Similarity=0.467 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHh
Q 032550 10 FFLLALALLFWFADC 24 (138)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (138)
|.+|+++||++|+++
T Consensus 5 ~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 5 FAIIIVAILLFLFLF 19 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444343
No 5
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=36.72 E-value=46 Score=20.61 Aligned_cols=15 Identities=33% Similarity=1.156 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032550 8 LAFFLLALALLFWFA 22 (138)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (138)
|.|..+..+|++||.
T Consensus 17 llflv~imliif~f~ 31 (43)
T PF11395_consen 17 LLFLVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445556677774
No 6
>PF11037 Musclin: Insulin-resistance promoting peptide in skeletal muscle; InterPro: IPR021088 Osteocrin, also known as Musclin, is a muscle derived secretory peptide which induces insulin resistance in vitro. It encodes a 130 amino acid sequence including a N-terminal 30 amino acid signal sequence. Musclin expression level is tightly regulated by nutritional changes [, ].
Probab=35.72 E-value=37 Score=26.01 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=17.2
Q ss_pred CCcchhhHHHHHHHHHHHHHH
Q 032550 1 MEGTRHALAFFLLALALLFWF 21 (138)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (138)
|-.-|-+-++|+|++.+|+|-
T Consensus 1 mLdwrl~~~hfiLav~l~~ws 21 (132)
T PF11037_consen 1 MLDWRLASVHFILAVTLMQWS 21 (132)
T ss_pred CcchhhHHHHHHHHHHHHHhc
Confidence 445577889999999999996
No 7
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.42 E-value=66 Score=26.38 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC
Q 032550 6 HALAFFLLALALLFWFADCSGH 27 (138)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (138)
..+-||+++++++|.+ .|++.
T Consensus 5 ~~~~~~l~~~As~LL~-aC~~~ 25 (206)
T COG3017 5 KRLLFLLLALASLLLT-ACTLT 25 (206)
T ss_pred HHHHHHHHHHHHHHHH-hccCc
Confidence 3466788888888888 78764
No 8
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=29.61 E-value=82 Score=18.86 Aligned_cols=14 Identities=43% Similarity=0.963 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 032550 10 FFLLALALLFWFAD 23 (138)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (138)
.+|-++.|.+||++
T Consensus 13 ~iLt~~ILvFWfgv 26 (34)
T PF08113_consen 13 MILTAFILVFWFGV 26 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556677889976
No 9
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=28.08 E-value=61 Score=25.04 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 032550 8 LAFFLLALALLFWFADCSGH 27 (138)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (138)
|..+.|++.+||.+++|--+
T Consensus 35 l~LlsLgl~~LLLV~IcVig 54 (138)
T PF03954_consen 35 LLLLSLGLSLLLLVVICVIG 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 56678999999999999874
No 10
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=26.57 E-value=71 Score=26.51 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=17.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcC
Q 032550 1 MEGTRHALAFFLLALALLFWFADCSG 26 (138)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (138)
|.+.++.+++++++++++ ++..|..
T Consensus 1 ~~~~~~~~~~~~~~~l~~-~~~gc~~ 25 (336)
T PRK00059 1 MKSIKKLVASLLVGVFIF-SAVGCNM 25 (336)
T ss_pred CchHHHHHHHHHHHHHHH-hhccccc
Confidence 667788888776666544 6778875
No 11
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=23.11 E-value=1.3e+02 Score=21.66 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCccccceeeCCCCCh--HHHHHHHHhHhcCCCCCCcccCCCC
Q 032550 46 EGVVTSWCIAKPSTDD--ESLNHNIDYSCRQKGVDCRPIQPGG 86 (138)
Q Consensus 46 ~~~~~lwCVak~~~~~--~~l~~~ldyaCg~~~~dCs~I~~gg 86 (138)
..+.++|=+++.-..+ ...++.++.+...++.++..|.+|.
T Consensus 42 ~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~~~I~~Gq 84 (103)
T PRK14125 42 QEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPSGHIKAGD 84 (103)
T ss_pred CCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCCCcCCCCC
Confidence 3344677777654332 2234556666665556777888875
No 12
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=21.83 E-value=55 Score=23.72 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCC
Q 032550 9 AFFLLALALLFWFADCSGHAELSSTHS 35 (138)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (138)
.|.-|-|++||.++.+.++||--+-+.
T Consensus 7 lfl~lSLailLmIISSqv~AREms~A~ 33 (93)
T PF03058_consen 7 LFLCLSLAILLMIISSQVDAREMSKAS 33 (93)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 345566667888989999988764433
No 13
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.87 E-value=1.2e+02 Score=19.47 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHH
Q 032550 1 MEGTRHALAFFLLALALLFWFA 22 (138)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (138)
|..-|-.+....+.++++||.-
T Consensus 1 ~kk~rwiili~iv~~Cl~lyl~ 22 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLLLWAQ 22 (47)
T ss_pred CceeeehHHHHHHHHHHHHHHH
Confidence 4555666777777788888873
No 14
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=20.83 E-value=66 Score=24.53 Aligned_cols=18 Identities=44% Similarity=0.824 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 032550 10 FFLLALALLFWFADCSGH 27 (138)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (138)
.|+|.+++++.+..|++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (235)
T TIGR03302 3 LLILLLALLLLLAGCSSK 20 (235)
T ss_pred hHHHHHHHHHHHhhccCC
Confidence 466677777888899995
Done!