Query 032550
Match_columns 138
No_of_seqs 139 out of 711
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jon_A Beta-1,3-glucanase; oli 100.0 9.9E-38 3.4E-42 225.3 10.9 89 49-138 10-98 (101)
2 2w61_A GAS2P, glycolipid-ancho 99.9 6.9E-26 2.3E-30 201.3 5.5 86 49-137 395-492 (555)
3 2v33_A E1 envelope glycoprotei 32.9 10 0.00035 26.4 0.3 21 117-137 20-40 (91)
4 3s8f_C Cytochrome C oxidase po 23.8 76 0.0026 18.1 2.9 17 7-23 10-26 (34)
5 2gsv_A Hypothetical protein YV 20.0 41 0.0014 22.4 1.3 9 100-108 28-36 (80)
6 1xrd_A LH-1, light-harvesting 17.1 1.1E+02 0.0039 18.9 2.9 19 7-25 16-34 (52)
7 3j00_Z Cell division protein F 15.9 99 0.0034 21.1 2.6 17 7-23 6-22 (98)
8 3j0f_E E1 envelope glycoprotei 14.4 76 0.0026 27.4 1.9 22 117-138 311-332 (439)
9 3sob_L Antibody light chain; b 13.1 58 0.002 22.7 0.8 13 46-58 39-51 (237)
10 2jwa_A Receptor tyrosine-prote 12.6 1.5E+02 0.0051 17.7 2.4 11 10-20 24-34 (44)
No 1
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Probab=100.00 E-value=9.9e-38 Score=225.34 Aligned_cols=89 Identities=48% Similarity=1.194 Sum_probs=86.2
Q ss_pred cccceeeCCCCChHHHHHHHHhHhcCCCCCCcccCCCCCCCCCCchhhhHhHHHHHHHHHhCCCCCcccCCceeeEEecC
Q 032550 49 VTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQN 128 (138)
Q Consensus 49 ~~lwCVak~~~~~~~l~~~ldyaCg~~~~dCs~I~~gg~C~~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~itt~d 128 (138)
.++|||+|+++++++|+++|||||+++ +||++|++||+||.|+++++|+|||||+|||++++..++|||+|+|+|+++|
T Consensus 10 ~~~wCVak~~~~~~~l~~~ldyACg~g-aDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~d 88 (101)
T 2jon_A 10 AGSWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNTN 88 (101)
T ss_dssp CSCEEEECTTSCHHHHHHHHHHHTTTS-SSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESSC
T ss_pred CCcEEEECCCCCHHHHHHHHHHHcCCC-CCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeecC
Confidence 468999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCC
Q 032550 129 PSWGTCKYPA 138 (138)
Q Consensus 129 pS~~sC~f~~ 138 (138)
||.++|+|+.
T Consensus 89 PS~g~C~f~~ 98 (101)
T 2jon_A 89 PSYGACNFPS 98 (101)
T ss_dssp CCCSSSCCCC
T ss_pred CCCCceecCC
Confidence 9999999984
No 2
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*
Probab=99.92 E-value=6.9e-26 Score=201.33 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=81.9
Q ss_pred cccceeeCCC-CChHHHHHHHHhHhcCCCCCCcccCCCCC-----CCCCCchhhhHhHHHHHHHHHhCCCCCcccCCce-
Q 032550 49 VTSWCIAKPS-TDDESLNHNIDYSCRQKGVDCRPIQPGGS-----CFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGT- 121 (138)
Q Consensus 49 ~~lwCVak~~-~~~~~l~~~ldyaCg~~~~dCs~I~~gg~-----C~~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~- 121 (138)
.++|||++++ +++++|+++||||||+ +||++|++||+ ||.||++++|||||||+|||++++..++|||+|+
T Consensus 395 ~~~~Cv~~~~~~~~~~l~~~~~yaC~~--~dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~ 472 (555)
T 2w61_A 395 EILPCEIVPFGAESGKYEEYFSYLCSK--VDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKN 472 (555)
T ss_dssp HHCSEEECCTTCCGGGHHHHHHHHTTT--SCGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTT
T ss_pred cCCeeecCCCCCCHHHHHHHHHHHhCc--CCCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCc
Confidence 4689999999 9999999999999998 89999999999 6999999999999999999999999999999999
Q ss_pred -----eeEEecCCCCCccccC
Q 032550 122 -----GLIVTQNPSWGTCKYP 137 (138)
Q Consensus 122 -----A~itt~dpS~~sC~f~ 137 (138)
|+++ ++||.++|+|+
T Consensus 473 ~~~~~a~~~-~~~s~~~C~~~ 492 (555)
T 2w61_A 473 VYFNLESLQ-PLTSESICKNV 492 (555)
T ss_dssp EEECGGGGS-CCCTTCTTHHH
T ss_pred ccccceEEE-eCCCCCchHhH
Confidence 9998 78899999984
No 3
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=32.90 E-value=10 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=16.8
Q ss_pred cCCceeeEEecCCCCCccccC
Q 032550 117 HFNGTGLIVTQNPSWGTCKYP 137 (138)
Q Consensus 117 dF~G~A~itt~dpS~~sC~f~ 137 (138)
||+|.|+|+......|.|..+
T Consensus 20 DFGGvatl~Y~a~k~GkCaVH 40 (91)
T 2v33_A 20 DFGGVLTLTYKTNKNGDCSVH 40 (91)
T ss_dssp EEEEEEEEEEEESSCEEEEEE
T ss_pred CCCCeEEEEEecCCCccceee
Confidence 899999999776666888654
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=23.85 E-value=76 Score=18.09 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032550 7 ALAFFLLALALLFWFAD 23 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (138)
+..|++-.+.++.||++
T Consensus 10 ~~V~ilg~~I~i~W~~v 26 (34)
T 3s8f_C 10 AVILVLTLTILVFWLGV 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455566677788865
No 5
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=19.95 E-value=41 Score=22.44 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 032550 100 FAMNLFYKS 108 (138)
Q Consensus 100 yAfN~YYq~ 108 (138)
-|||.||..
T Consensus 28 hAmNaYYrs 36 (80)
T 2gsv_A 28 HAMNSYYRS 36 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 6
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=17.12 E-value=1.1e+02 Score=18.93 Aligned_cols=19 Identities=53% Similarity=0.620 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 032550 7 ALAFFLLALALLFWFADCS 25 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (138)
++..|+++++++.=|++=+
T Consensus 16 a~~~fl~vlAl~IHfilLS 34 (52)
T 1xrd_A 16 GLATFLFVLALLIHFILLS 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5667888888887775543
No 7
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=15.87 E-value=99 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032550 7 ALAFFLLALALLFWFAD 23 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (138)
.+.||++++..|+|.+.
T Consensus 6 G~~F~l~Vl~~l~~~~~ 22 (98)
T 3j00_Z 6 GILFLLTVLTTVLVSGW 22 (98)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 36788888766666644
No 8
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=14.37 E-value=76 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.0
Q ss_pred cCCceeeEEecCCCCCccccCC
Q 032550 117 HFNGTGLIVTQNPSWGTCKYPA 138 (138)
Q Consensus 117 dF~G~A~itt~dpS~~sC~f~~ 138 (138)
||+|.|+|+......|+|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (439)
T 3j0f_E 311 DFGGMATLQYVSDREGQCPVHS 332 (439)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999997776678897653
No 9
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=13.12 E-value=58 Score=22.73 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=8.6
Q ss_pred CCccccceeeCCC
Q 032550 46 EGVVTSWCIAKPS 58 (138)
Q Consensus 46 ~~~~~lwCVak~~ 58 (138)
+....+.|.+...
T Consensus 39 G~~v~L~C~~~~~ 51 (237)
T 3sob_L 39 GDRVTITCRASQD 51 (237)
T ss_dssp TCCEEEEEEESSC
T ss_pred CCcEEEEEecCCC
Confidence 3345788987765
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=12.61 E-value=1.5e+02 Score=17.67 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 032550 10 FFLLALALLFW 20 (138)
Q Consensus 10 ~~~~~~~~~~~ 20 (138)
++++++.+++|
T Consensus 24 ~vi~~l~~~~~ 34 (44)
T 2jwa_A 24 VVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34444444444
Done!