Query 032550
Match_columns 138
No_of_seqs 139 out of 711
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 04:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032550.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032550hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v33a1 b.1.18.4 (A:293-382) F 33.7 4.6 0.00034 26.4 0.3 21 117-137 19-39 (90)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 31.6 22 0.0016 18.7 2.9 12 14-25 16-27 (33)
3 d2gsva1 a.23.7.1 (A:3-69) Hypo 22.9 15 0.0011 22.3 1.3 9 100-108 26-34 (67)
4 d1pb5a_ g.65.1.1 (A:) Neurogen 22.7 6.2 0.00045 21.5 -0.6 12 69-80 24-35 (35)
5 d1xrda1 f.3.1.1 (A:1-52) Light 16.5 57 0.0042 18.8 2.9 17 7-23 16-32 (52)
6 d2dlka1 g.37.1.1 (A:8-37) Zinc 14.6 26 0.0019 18.0 0.8 12 115-126 2-13 (30)
7 d1wqji1 g.1.1.1 (I:2-63) Insul 12.1 88 0.0064 18.4 2.9 17 62-78 7-23 (62)
8 d2v5pc1 g.1.1.1 (C:6-63) Insul 10.8 1.1E+02 0.0082 17.8 3.0 15 62-76 6-20 (58)
9 d1cc5a_ a.3.1.1 (A:) Cytochrom 9.7 85 0.0062 18.0 2.3 15 57-71 66-80 (83)
10 d1kx7a_ a.3.1.1 (A:) Mono-heme 8.5 1E+02 0.0074 17.5 2.3 15 57-71 63-77 (81)
No 1
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=33.70 E-value=4.6 Score=26.42 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=16.8
Q ss_pred cCCceeeEEecCCCCCccccC
Q 032550 117 HFNGTGLIVTQNPSWGTCKYP 137 (138)
Q Consensus 117 dF~G~A~itt~dpS~~sC~f~ 137 (138)
||+|.|+|+......|.|..+
T Consensus 19 DfGGvatl~Y~a~k~GkCaVH 39 (90)
T d2v33a1 19 DFGGVLTLTYKTNKNGDCSVH 39 (90)
T ss_dssp EEEEEEEEEEEESSCEEEEEE
T ss_pred CcCCeEEEEEecCCCccceeE
Confidence 899999999776666888654
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=31.55 E-value=22 Score=18.65 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhc
Q 032550 14 ALALLFWFADCS 25 (138)
Q Consensus 14 ~~~~~~~~~~~~ 25 (138)
.+.|.+||++=+
T Consensus 16 l~ilvfw~gv~a 27 (33)
T d1xmec1 16 LTILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345678998754
No 3
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=22.91 E-value=15 Score=22.30 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 032550 100 FAMNLFYKS 108 (138)
Q Consensus 100 yAfN~YYq~ 108 (138)
-|||+||..
T Consensus 26 hAmNaYYrs 34 (67)
T d2gsva1 26 HAMNSYYRS 34 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 4
>d1pb5a_ g.65.1.1 (A:) Neurogenic locus notch homolog protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.68 E-value=6.2 Score=21.46 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=8.8
Q ss_pred HhHhcCCCCCCc
Q 032550 69 DYSCRQKGVDCR 80 (138)
Q Consensus 69 dyaCg~~~~dCs 80 (138)
+++||..+.||+
T Consensus 24 nhaCgWDgGDCS 35 (35)
T d1pb5a_ 24 NHACGWDGGDCS 35 (35)
T ss_dssp STTTTGGGGSCC
T ss_pred ccccCCCCCCCC
Confidence 467887777885
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=16.51 E-value=57 Score=18.84 Aligned_cols=17 Identities=53% Similarity=0.679 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032550 7 ALAFFLLALALLFWFAD 23 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (138)
|+..||.+|+++.=|+.
T Consensus 16 a~~~fL~~LAl~IHfiL 32 (52)
T d1xrda1 16 GLATFLFVLALLIHFIL 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56678888888877754
No 6
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.65 E-value=26 Score=18.03 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=9.5
Q ss_pred cccCCceeeEEe
Q 032550 115 NCHFNGTGLIVT 126 (138)
Q Consensus 115 aCdF~G~A~itt 126 (138)
.|||.|-+.|-+
T Consensus 2 ~cdf~gc~kifs 13 (30)
T d2dlka1 2 PCDFPGCGRIFS 13 (30)
T ss_dssp ECSSTTTCCEES
T ss_pred CCCCCCchhhhc
Confidence 499999888754
No 7
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.09 E-value=88 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=13.1
Q ss_pred HHHHHHHHhHhcCCCCC
Q 032550 62 ESLNHNIDYSCRQKGVD 78 (138)
Q Consensus 62 ~~l~~~ldyaCg~~~~d 78 (138)
..|-++|-++||.-|..
T Consensus 7 s~LvdaL~~VCG~rGfy 23 (62)
T d1wqji1 7 AELVDALQFVCGDRGFY 23 (62)
T ss_dssp HHHHHHHHHHHGGGCBC
T ss_pred HHHHHHHHHHHccCCCC
Confidence 56889999999874433
No 8
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.78 E-value=1.1e+02 Score=17.79 Aligned_cols=15 Identities=20% Similarity=0.680 Sum_probs=12.4
Q ss_pred HHHHHHHHhHhcCCC
Q 032550 62 ESLNHNIDYSCRQKG 76 (138)
Q Consensus 62 ~~l~~~ldyaCg~~~ 76 (138)
+.|-++|-++||.-|
T Consensus 6 s~LVdaL~~VCg~rG 20 (58)
T d2v5pc1 6 GELVDTLQFVCGDRG 20 (58)
T ss_dssp HHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHcCCC
Confidence 568899999999754
No 9
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=9.67 E-value=85 Score=17.95 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHHhH
Q 032550 57 PSTDDESLNHNIDYS 71 (138)
Q Consensus 57 ~~~~~~~l~~~ldya 71 (138)
...+++++.++++|+
T Consensus 66 ~~Lsd~ei~~vv~Yi 80 (83)
T d1cc5a_ 66 ADCSDDELKAAIGKM 80 (83)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 357999999999997
No 10
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}
Probab=8.53 E-value=1e+02 Score=17.55 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHHhH
Q 032550 57 PSTDDESLNHNIDYS 71 (138)
Q Consensus 57 ~~~~~~~l~~~ldya 71 (138)
...+++++.++++|+
T Consensus 63 ~~Lsd~ei~~v~~Yi 77 (81)
T d1kx7a_ 63 TDCTDEDYKAAIEFM 77 (81)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 457899999999997
Done!