BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032551
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH A+V N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NADPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NNDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH A+V N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH A V N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAXVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH A V N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAAVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH A V N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAVVNNLNVTEEKYQEALAKGDVTA 56
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH A+V N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAHVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH A V N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAANVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 143 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 194
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 4 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 57
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 143 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 194
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH K H AYV N N E+ +AL K D +
Sbjct: 4 SLPDLPYDYGALEPHINAQIMQLHHSKVHAAYVNNLNVTEEKYQEALAKGDVTA 57
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH K H AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKQHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QTALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH K+H AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L ++ H + + + N+ P+
Sbjct: 57 QIALQPALKLNGGGHINHSIFWTNLSPN 84
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAY+LQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVWEHAY+LQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY ALEP I+ +IMQLHH K+H AYV N N E+ +AL K D VT
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLNVTEEKYQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVW+HAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWDHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD 79
TLP+LPYDYSALEP ISGEIM+LHH KHH+AYV N A+++L +A +K D
Sbjct: 4 TLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKAD 54
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
+PLL +D+WEHA+YLQYKNVK DY+K+ WNV+NW
Sbjct: 155 IPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNW 188
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDVW HAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWAHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 80 TSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
+ DPL LVPL GIDVWEHAYYLQYKNV+PDY+ IW + NWK S+ + K
Sbjct: 141 ANQDPL-EATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSERFAK 195
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLPYDY+ LEP IS EIMQLHHQKHH YV N N+ E+L +A++K + V +
Sbjct: 4 SLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGN------VKE 57
Query: 89 APTLVPLLGID 99
A L P L +
Sbjct: 58 AIALQPALKFN 68
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL L+PLLGIDV EHAYYLQYKNV+PDYLK IWNV+NW+ ++ Y
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVAEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTST 82
+LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N E+ +AL K D +
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTA 56
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 74 ALNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
AL+ V T+ ++ AP LVP++ ID WEHAYYLQY+NVK DY K IWNV+NW A Y
Sbjct: 146 ALDVVTTANQDTIS-APHLVPIIAIDAWEHAYYLQYQNVKLDYFKAIWNVINWAEAESRY 204
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD 79
+ ++LP + + ALEP IS EI LH KHH AYV YN A++ L +A+ K D
Sbjct: 6 EKISLPKIDWALDALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRD 59
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 77
TLPDLP+DY+ LEP IS EIMQLHHQKHH YV N N+ E+L +A++K
Sbjct: 4 TLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 52
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 80 TSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+ DPL +VPL GIDVWEHAYYLQYKNV+PDY+ IW + NWK S+ +
Sbjct: 141 ANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANWKNISERF 190
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 37/55 (67%), Gaps = 7/55 (12%)
Query: 79 DTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
DT T PLV PL+ ID WEHAYYLQY+N K DY K IWNV+NWK AS +
Sbjct: 163 DTVTGPLV-------PLVAIDAWEHAYYLQYQNKKADYFKAIWNVVNWKEASRRF 210
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV 78
VTLPDL +D+ ALEP ISG+I +LH+ KHHQ YV +N AV+Q FQ L+ +
Sbjct: 10 VTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDL 59
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 37/55 (67%), Gaps = 7/55 (12%)
Query: 79 DTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
DT T PLV PL+ ID WEHAYYLQY+N K DY K IWNV+NWK AS +
Sbjct: 163 DTVTGPLV-------PLVAIDAWEHAYYLQYQNKKADYFKAIWNVVNWKEASRRF 210
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV 78
VTLPDL +D+ ALEP ISG+I +LH+ KHHQ YV +N AV+Q FQ L+ +
Sbjct: 10 VTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDL 59
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide
Dismutase From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide
Dismutase From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide
Dismutase From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide
Dismutase From Pyrobaculum Aerophilum
Length = 222
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
TLP LPY Y+ALEP IS EIMQLHHQKHHQ YV N A+E+L
Sbjct: 19 TLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKL 61
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 95 LLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
LL +DVWEHAYYLQYKN + Y+ N WNV+NW QK
Sbjct: 172 LLALDVWEHAYYLQYKNDRGSYVDNWWNVVNWDDVERRLQK 212
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW A + ++K
Sbjct: 159 FTPIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 202
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 70
LPDL Y Y ALEP I + M++HHQKHH AYVTN N A+E+
Sbjct: 6 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK 46
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 131
+ DPL L+PLLGIDVWEHA LQ KNV+PD LK IWNV+NW+ ++
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAXXLQXKNVRPDXLKAIWNVINWENVTE 191
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLP D ALEP I+ +IMQLHH KHH A V N N E+ +AL K D VT
Sbjct: 3 SLPDLPXDXGALEPHINAQIMQLHHSKHHAAXVNNLNVTEEKXQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEH-AYYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 81 STDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 131
+ DPL L+PLLGIDVWEHA LQ KNV+PD LK IWNV+NW+ ++
Sbjct: 142 NQDPL-QGTTGLIPLLGIDVWEHAXXLQXKNVRPDXLKAIWNVINWENVTE 191
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
+LPDLP D ALEP I+ +IMQLHH KHH A+V N N E+ +AL K D VT
Sbjct: 3 SLPDLPXDXGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKXQEALAKGD------VTA 56
Query: 89 APTLVPLLGIDVWEHA-YYLQYKNVKPD 115
L P L + H + + + N+ P+
Sbjct: 57 QIALQPALKFNGGGHINHSIFWTNLSPN 84
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54 QKHHQAYVTNYNKAVEQLFQALNKVDTST-----DPLVTKAPTLV---PLLGIDVWEHAY 105
QK A T + L K+D + +PL+ +A V P+LG+DVWEHAY
Sbjct: 121 QKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAY 180
Query: 106 YLQYKNVKPDYLKNIWNVMNWKYASDVY 133
YL Y+N +PDYL WNV+NW S Y
Sbjct: 181 YLNYQNRRPDYLAAFWNVVNWDEVSKRY 208
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQA 74
+ TLP LPY Y ALEP I M++HH KHHQ YV N NKA VEQL Q
Sbjct: 1 MAAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQ 60
Query: 75 LNKV 78
L++V
Sbjct: 61 LDRV 64
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54 QKHHQAYVTNYNKAVEQLFQALNKVDTST-----DPLVTKAPTLV---PLLGIDVWEHAY 105
QK A T + L K+D + +PL+ +A V P+LG+DVWEHAY
Sbjct: 120 QKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAY 179
Query: 106 YLQYKNVKPDYLKNIWNVMNWKYASDVY 133
YL Y+N +PDYL WNV+NW S Y
Sbjct: 180 YLNYQNRRPDYLAAFWNVVNWDEVSKRY 207
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKV 78
TLP LPY Y ALEP I M++HH KHHQ YV N NKA VEQL Q L++V
Sbjct: 4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRV 63
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54 QKHHQAYVTNYNKAVEQLFQALNKVDTST-----DPLVTKAPTLV---PLLGIDVWEHAY 105
QK A T + L K+D + +PL+ +A V P+LG+DVWEHAY
Sbjct: 140 QKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAY 199
Query: 106 YLQYKNVKPDYLKNIWNVMNWKYASDVY 133
YL Y+N +PDYL WNV+NW S Y
Sbjct: 200 YLNYQNRRPDYLAAFWNVVNWDEVSKRY 227
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKV 78
TLP LPY Y ALEP I M++HH KHHQ YV N NKA VEQL Q L++V
Sbjct: 24 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRV 83
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S L K
Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEK 64
Query: 89 --APTLVPLLGIDVWEHAYYLQYKNVKPD 115
A L + +W +KN+ P+
Sbjct: 65 NLAFNLAGHVNHTIW-------WKNLSPN 86
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
+VPLL +D+WEHA+YLQYKNVK D+ K WNV+NW
Sbjct: 153 IVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S L K
Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEK 64
Query: 89 --APTLVPLLGIDVWEHAYYLQYKNVKPD 115
A L + +W +KN+ P+
Sbjct: 65 NLAFNLAGHVNHTIW-------WKNLSPN 86
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
+VPLL +D+WEHA+YLQYKNVK D+ K WNV+NW
Sbjct: 153 IVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S L K
Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEK 64
Query: 89 --APTLVPLLGIDVWEHAYYLQYKNVKPD 115
A L + +W +KN+ P+
Sbjct: 65 NLAFNLAGHVNHTIW-------WKNLSPN 86
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
+VPLL +D+WEHA+YLQYKNVK D+ K WNV+NW
Sbjct: 153 IVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S L K
Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEK 64
Query: 89 --APTLVPLLGIDVWEHAYYLQYKNVKPD 115
A L + +W +KN+ P+
Sbjct: 65 NLAFNLAGHVNHTIW-------WKNLSPN 86
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 91 TLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
+VPLL +D+WEHA+YLQYKNVK D+ K WNV+NW
Sbjct: 152 AIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTK 88
TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S L K
Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEK 64
Query: 89 --APTLVPLLGIDVWEHAYYLQYKNVKPD 115
A L + +W +KN+ P+
Sbjct: 65 NLAFNLAGHVNHTIW-------WKNLSPN 86
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
+VPLL +D+WEHA+YLQYKNVK D+ K WNV+NW
Sbjct: 153 IVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 74 ALNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
+L+ V+TS + P+L +D+WEHAYY+ Y+NV+PDYLK W+++NW++A+
Sbjct: 132 SLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFAN 188
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTKA 89
LP LPY ALEP IS E ++ HH KHH YV N L + S + +V +
Sbjct: 4 LPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNG----LIPGTKFENKSLEEIVCSS 59
Query: 90 PTLVPLLGIDVWEHAYY 106
V +W H +Y
Sbjct: 60 DGGVFNNAAQIWNHTFY 76
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 84 PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
PL+ +A + P++G+DVWEHAYYL+++N +PDY+K WNV+NW A+
Sbjct: 149 PLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 198
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
+ TLP LPY Y ALEP + M++HH KHHQ +V N N A+E L
Sbjct: 1 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTFVNNANAALESL 45
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 84 PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
PL+ +A + P++G+DVWEHAYYL+++N +PDY+K WNV+NW A+
Sbjct: 149 PLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 198
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ TLP LPY Y ALEP + M++HH K HQ YV N N A+E L + N + L+
Sbjct: 1 SYTLPSLPYAYDALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFAN---LPVEELI 57
Query: 87 TK 88
TK
Sbjct: 58 TK 59
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 84 PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
PL+ +A + P++G+DVWEHAYYL+++N +PDY+K WNV+NW A+
Sbjct: 149 PLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 198
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L + N + L+
Sbjct: 1 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFAN---LPVEELI 57
Query: 87 TK 88
TK
Sbjct: 58 TK 59
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 84 PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
PL+ +A + P++G+DVWEHAYYL+++N +PDY+K WNV+NW A+
Sbjct: 149 PLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 198
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L + N + L+
Sbjct: 1 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFAN---LPVEELI 57
Query: 87 TK 88
TK
Sbjct: 58 TK 59
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 84 PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
PL+ +A + P++G+DVWEHAYYL+++N +PDY+K WNV+NW A+
Sbjct: 149 PLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 198
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L + N + L+
Sbjct: 1 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFAN---LPVEELI 57
Query: 87 TK 88
TK
Sbjct: 58 TK 59
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 7/52 (13%)
Query: 79 DTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
DT T PLV PL+ ID WEHAYYLQY+N DY IWNV+NW AS
Sbjct: 155 DTVTGPLV-------PLVAIDAWEHAYYLQYQNXXADYFXAIWNVVNWXEAS 199
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV 78
VTLPDL +D+ ALEP ISG+I +LH+ HHQ +V +N AV+Q FQ L+ +
Sbjct: 2 VTLPDLXWDFGALEPYISGQINELHYTXHHQTFVNGFNTAVDQ-FQELSDL 51
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
P++G+DVWEHAYYL Y+N +PDY+ WNV++W A YQ+
Sbjct: 168 TPVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 210
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKV 78
LP+LPY Y ALEP E M +HH KHH Y+TN N K+VE+L LN+V
Sbjct: 15 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEV 74
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 7/52 (13%)
Query: 79 DTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
DT T PLV PL+ ID WEHAYYLQY+N DY IWNV+NW AS
Sbjct: 155 DTVTGPLV-------PLVAIDAWEHAYYLQYQNXXADYFXAIWNVVNWXEAS 199
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV 78
VTLPDL +D+ ALEP ISG+I +LH+ HHQ YV +N AV+Q FQ L+ +
Sbjct: 2 VTLPDLXWDFGALEPYISGQINELHYTXHHQTYVNGFNTAVDQ-FQELSDL 51
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 84 PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
PL+ +A + P++G+DVWEHAY+L+++N +PDY+K WNV+NW A+
Sbjct: 149 PLMGEAISGASGFPIMGLDVWEHAYFLKFQNRRPDYIKEFWNVVNWDEAA 198
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
+ TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L
Sbjct: 1 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESL 45
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
P+LG+DVWEHAYYL Y+N +PDY+ WNV+NW + +Y +
Sbjct: 158 TPILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSE 200
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 31/48 (64%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 77
LP+LPY Y ALEP I E M +HH KHH YVTN NKAVE NK
Sbjct: 5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANK 52
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 78 VDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
+D +++ L P+L +DVWEHAYY ++N +PDYLK IW+V++W++ + ++ +
Sbjct: 181 IDNTSNAGCPLTKGLRPVLAVDVWEHAYYKDFENRRPDYLKEIWSVIDWEFVAKMHAQ 238
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 30 LPDLPYDY-SALEPAISGEIMQLHHQKHHQAYVTNYN---------KAVEQLFQAL 75
LP L +++ P S M+LH+ KHH+AYV N K++E++ A+
Sbjct: 44 LPKLGFNWKDGCAPVFSPRQMELHYTKHHKAYVDKLNALAGTTYDGKSIEEIILAV 99
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 76 NKVDTST----DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 131
K+D +T DP+ AP + G+D+WEHAYYLQY N K Y K IWNV+NW A +
Sbjct: 151 GKLDITTTHDQDPVTGAAP----VFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAEN 206
Query: 132 VY 133
Y
Sbjct: 207 RY 208
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPL 85
Q TLP LPY Y AL+P IS +IM+LHH+KHHQ YV N A+E +A D P
Sbjct: 14 QQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDV---PK 70
Query: 86 VTKAPTLVPLLGIDVWEHAYYLQYKNVKPD 115
+ + G H+ + +KN+ P+
Sbjct: 71 LVSVQQAIKFNGGGHINHSLF--WKNLAPE 98
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 94 PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
P+LG+DVWEHAYYL+Y+N +PDY+ WNV+NW + Y +
Sbjct: 159 PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWDEVAAQYSQ 200
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 69
LP+LPY Y ALEP I E M +HH KHH YVT N A+E
Sbjct: 5 LPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALE 44
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 131
PL+ IDVWEHAYY+ Y+N + Y+KN WN++NW + +D
Sbjct: 181 TPLMNIDVWEHAYYIDYRNARAQYVKNYWNLVNWDFVND 219
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 3 LRSLATRKAIGLGKSVGLGLRGLQTVT----LPDLPYDYSALEPAISGEIMQLHHQKHHQ 58
SLAT + +G + R +VT P LPY +ALEP +S E + HH KHHQ
Sbjct: 9 FASLATTPVLRMGLA-----RCFSSVTGPFQCPPLPYVKNALEPHMSAETLTYHHDKHHQ 63
Query: 59 AYVTNYNKAVEQLFQALNKVDTSTDPLVTKAPTLVPL-LGIDVWEHAYYLQYKNVKPD 115
YV N + + + + T + K T P V+ H ++ + N+ P+
Sbjct: 64 TYVDTLNSIAAE----NSTIASKTLEQIIKTETGKPFNQAAQVYNHTFF--FNNLAPN 115
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 86 VTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 127
V P LL +DVWEHAYY+ Y+NV+PDY++ WN++NWK
Sbjct: 154 VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 195
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTD 83
LP+LPY Y ALEP IS E + +HHQKHHQAYV N + +L +A + DT D
Sbjct: 11 LPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEA-RESDTDVD 63
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 94 PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
P++G DVWEHAYYL+Y+N +P+YL N WNV+NW
Sbjct: 195 PIMGNDVWEHAYYLRYQNRRPEYLNNWWNVVNW 227
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 16 KSVGLGLRGLQT--VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA------ 67
+S+G R L T LP LPY Y ALE AI E M+LHH KHH AYV N N A
Sbjct: 24 RSIGFIDRQLGTNPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPE 83
Query: 68 -----VEQLFQALNKV 78
VE L + LN V
Sbjct: 84 LQNSSVEALLRDLNSV 99
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 74 ALNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
A+ + PL T A PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct: 134 AIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 187
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ LP LPY AL P IS E ++ H+ KHHQ YVTN N L + S + ++
Sbjct: 1 SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLN----NLIKGTAFEGKSLEEII 56
Query: 87 TKAPTLVPLLGIDVWEHAYY 106
+ V VW H +Y
Sbjct: 57 RSSEGGVFNNAAHVWNHTFY 76
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 74 ALNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
A+ + PL T A PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct: 134 AIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 187
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ LP LPY AL P IS E ++ H+ KHHQ YVTN N L + S + ++
Sbjct: 1 SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLN----NLIKGTAFEGKSLEEII 56
Query: 87 TKAPTLVPLLGIDVWEHAYY 106
+ V VW H +Y
Sbjct: 57 RSSEGGVFNNAAQVWNHTFY 76
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 74 ALNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 130
A+ + PL T A PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct: 134 AIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 187
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ LP LPY AL P IS E ++ H+ KHHQ YVTN N L + S + ++
Sbjct: 1 SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLN----NLIKGTAFEGKSLEEII 56
Query: 87 TKAPTLVPLLGIDVWEHAYY 106
+ V +VW H +Y
Sbjct: 57 RSSEGGVFNNAAEVWNHTFY 76
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 126
LVP+L IDVWEHAYYLQYKN + Y++N WNV+NW
Sbjct: 158 LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 24 GLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
+ LP LPY+Y+ALEP I EIM+LHHQKHH YV N A+E++
Sbjct: 3 SFKRYELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKI 50
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
L P+L DVWEHAYY+ YKN +P Y++ WNV+NW +A + + +
Sbjct: 154 LKPILTCDVWEHAYYIDYKNDRPAYVQTFWNVVNWDHAENQFTR 197
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 28 VTLPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAV 68
++P LP+ Y L IS E + H+ KHH YVT N A
Sbjct: 3 FSIPPLPWGYDGLAAKGISKEQVTFHYDKHHMGYVTKLNAAA 44
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 32/40 (80%)
Query: 94 PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
PLL DVWEHAYY+ Y+N +P Y++ +W+++NW++ S+ +
Sbjct: 154 PLLTFDVWEHAYYIDYRNARPKYVEALWDIVNWQFVSEQF 193
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 69
LP LPY ALE IS E ++ H+ KHHQ YVTN N VE
Sbjct: 8 LPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVE 47
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 88 KAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
K T +P+L D+WEHAYY+ Y+N +P Y+K WN++NW +A++ +K
Sbjct: 147 KDNTGIPILTCDIWEHAYYIDYRNDRPSYVKAWWNLVNWNFANENLKK 194
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 24/90 (26%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+ LP L Y +AL P IS E + H+ KHH YV N ++ DT P
Sbjct: 2 AIILPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNGLIK---------DT---PFA 49
Query: 87 TKAPTLVPLL----------GIDVWEHAYY 106
TK +LV ++ +W H++Y
Sbjct: 50 TK--SLVEIMKESTGAIFNNAAQIWNHSFY 77
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 74 ALNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
A+ + PL + T PLL +D+WEHAYY+ ++NV+PDY+ W+++NW + +
Sbjct: 135 AIVNTSNAATPLTDEGVT--PLLTVDLWEHAYYIDFRNVRPDYMGAFWSLVNWSFVEENL 192
Query: 134 QK 135
K
Sbjct: 193 AK 194
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 24/90 (26%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN----------KAVEQLFQALN 76
+ LP LP+ ALEP IS E + HH KHH YV N K +E++
Sbjct: 2 SFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEI----- 56
Query: 77 KVDTSTDPLVTKAPTLVPLLGIDVWEHAYY 106
+ TST + A +W H +Y
Sbjct: 57 -IKTSTGGVFNNAA--------QIWNHTFY 77
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 134
PLL DVWEHAYY+ Y+N++P Y++ WN++NW + ++ ++
Sbjct: 150 TPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 191
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNK-VDTSTDPL 85
LP LPY + AL+P IS E ++ HH KHH YV N N V E + L + V TS+ +
Sbjct: 4 LPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTSSGGI 63
Query: 86 VTKAPTLVPLLGIDVWEHAYY 106
A VW H +Y
Sbjct: 64 FNNA--------AQVWNHTFY 76
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
L PLLG DVWEHAYYL Y+N + D+LK++W++++W Y
Sbjct: 150 LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 68
T L LPY AL P IS E ++ HH KH + YV N NK +
Sbjct: 2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI 43
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTD 83
L+ LP LPY+Y ALEP IS E ++ HH KHH YV N A+++L + LN T D
Sbjct: 16 LKRYELPPLPYNYDALEPIISAETLRYHHDKHHLGYVNGANAALDKLEKYLNGQLTDID 74
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 91 TLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
L+PLL +DV+EHAYY+ Y+N + Y+ + W+++NW YQK
Sbjct: 170 NLIPLLAVDVFEHAYYIDYRNDRAKYVDSWWDLINWDDVEARYQK 214
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 90 PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 127
P L PLL DVWEHAYY+ YKN + Y++ WNV+NWK
Sbjct: 151 PNLKPLLTCDVWEHAYYVDYKNDRAAYVQTFWNVVNWK 188
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 28 VTLPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
++P LP+ Y L +S + + LH+ KHHQ YVT N A Q AL S + ++
Sbjct: 2 FSIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAA-QTNSAL--ATKSIEEII 58
Query: 87 TKAPTLVPLLGIDVWEHAYYLQ 108
+ L ++ H +Y +
Sbjct: 59 RTEKGPIFNLAAQIFNHTFYWE 80
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 78 VDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
+D++++ L P+ DVWEHAYY ++N + DYLK +W +++W++ +Y++
Sbjct: 170 IDSTSNAGCPLTSGLRPIFTADVWEHAYYKDFENRRADYLKELWQIVDWEFVCHMYER 227
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 30 LPDLPYDY-SALEPAISGEIMQLHHQKHHQAYVTNYN--------KAVEQLFQALNKVDT 80
LP L ++Y ++P +S ++LH+ KHH AYV N K +E++ A ++
Sbjct: 35 LPTLGFNYKDGIQPVMSPRQLELHYSKHHSAYVDKLNTLGKGYEGKTIEEIILATTGINE 94
Query: 81 S 81
S
Sbjct: 95 S 95
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 131
PLL DVWEHAYY+ Y+N++P Y++ WN++NW + ++
Sbjct: 150 TPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAE 188
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTKA 89
LP LPY + AL+P IS E ++ HH KHH YV N N V + K + + +V +
Sbjct: 4 LPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGK---TLEEIVKSS 60
Query: 90 PTLVPLLGIDVWEHAYYLQYKNVKPD 115
+ VW H +Y + + PD
Sbjct: 61 SGGIFNNAAQVWNHTFY--WNCLSPD 84
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
+PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW ++ Y
Sbjct: 168 IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDRVNEKY 208
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTKA 89
LP L YDY LEP I + +HH KHH YV N N A+E + NK S + L+
Sbjct: 15 LPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNK---SLEELLCNL 71
Query: 90 PTL 92
TL
Sbjct: 72 ETL 74
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 89 APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 134
+ L P++G+DVWEHAYYL+Y+N + +Y+ N +NV+NW A + Y+
Sbjct: 157 SKNLTPIIGLDVWEHAYYLKYQNRRNEYIDNWFNVVNWNGALENYK 202
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 33 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 70
LPY Y ALEP I E M+LHH KH+QAYV N A+E+
Sbjct: 11 LPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEK 48
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 88 KAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
K T +P+L D+WEHAYY+ Y+N + Y+K WN++NW +A++ +K
Sbjct: 147 KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVT 87
+TLP L Y +AL P IS E + H+ KHH YV N ++ A + S +V
Sbjct: 3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA----EKSLLDIVK 58
Query: 88 KAPTLVPLLGIDVWEHAYYLQYKNVKPD 115
++ + +W H +Y + ++ PD
Sbjct: 59 ESSGAIFNNAAQIWNHTFY--WDSMGPD 84
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 88 KAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
K T +P+L D+WEHAYY+ Y+N + Y+K WN++NW +A++ +K
Sbjct: 146 KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 193
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVT 87
+TLP L Y +AL P IS E + H+ KHH YV N ++ A + S +V
Sbjct: 2 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA----EKSLLDIVK 57
Query: 88 KAPTLVPLLGIDVWEHAYYLQYKNVKPD 115
++ + +W H +Y + ++ PD
Sbjct: 58 ESSGAIFNNAAQIWNHTFY--WDSMGPD 83
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 95 LLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
LL +DVWEHAYYLQYKN + Y+ N WNV+NW QK
Sbjct: 172 LLALDVWEHAYYLQYKNDRGSYVDNWWNVVNWDDVERRLQK 212
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%)
Query: 29 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
TLP LPY Y+ALEP IS EI QLHHQKHHQ YV N A+E+L
Sbjct: 19 TLPPLPYAYNALEPYISAEIXQLHHQKHHQGYVNGANAALEKL 61
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 88 KAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 131
K T +P+L DVWEHAYY+ Y+N + Y+K WN++NW +A++
Sbjct: 155 KENTGIPILTCDVWEHAYYIDYRNDRLSYVKAWWNLVNWNFANE 198
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLV 86
+TLP L Y +AL P IS E + H+ KHH YV N ++ A + S ++
Sbjct: 10 AITLPKLKYALNALSPHISEETLSFHYNKHHAGYVNKLNGLIKDTPLA----NKSLTDIL 65
Query: 87 TKAPTLVPLLGIDVWEHAYY 106
++ + +W H++Y
Sbjct: 66 KESTGAIFNNAAQIWNHSFY 85
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 69
LPDLPY +ALEP IS E ++ HH KHH+AYV NK +E
Sbjct: 5 LPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIE 44
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 94 PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 136
PL+ DVWEHAYY+ +N +P Y+ N W V+NW + ++ E
Sbjct: 152 PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDFVMKNFKSE 194
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133
L PLL DVWEHAYYL Y+N + D+LK++W++++W Y
Sbjct: 150 LNPLLTFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 68
T L LPY AL P IS E ++ HH KH + YV N NK +
Sbjct: 2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI 43
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 75 LNKVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYAS 130
+ K + +PLV VPLL IDVWEHAYYL Y+N +PD++ N N ++NW + +
Sbjct: 140 VTKTANAENPLVHGQ---VPLLTIDVWEHAYYLDYQNRRPDFIDNFLNQLVNWDFVA 193
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 33 LPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTKAPT 91
LP+D ALEP +S + ++ H+ KHH+ YV N NK L Q D S + ++
Sbjct: 7 LPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNK----LTQDTELADKSLEDVIRTTYG 62
Query: 92 LVPLLGI-----DVWEHAYYLQYKNVKP 114
+GI VW H ++ + ++KP
Sbjct: 63 DAAKVGIFNNAAQVWNHTFF--WNSLKP 88
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 134
VPLL +DVWEHAYY+ +KN +P YL+ + +NW + S Y+
Sbjct: 150 VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWHFVSQCYE 191
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 28 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVT 87
TL +LP+ ++ +S HH KHHQ YV N N L + + +S ++T
Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN----NLIKGTDFEKSSLFAILT 57
Query: 88 KAPTLVPLLGIDVWEHAYY 106
K+ V ++ H +Y
Sbjct: 58 KSSGGVFNNAAQIYNHDFY 76
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 129
+PL DVWEHAYYL Y++ + YL W+++NW++A
Sbjct: 235 IPLFTCDVWEHAYYLDYQHDRAAYLTRWWSLINWEFA 271
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 33 LPYDYSALEPAISGEIMQLHHQKHHQAYV 61
LPY ALEP IS + H+ KHHQ Y+
Sbjct: 84 LPYGLEALEPVISAATVDFHYNKHHQGYI 112
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 77 KVDTSTDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
++ T + + L +L +D +EHAYYLQYKN + DYL WNV+NW A QK
Sbjct: 148 QIMTVENHFMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQK 206
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
L+ P LPY ALEP IS +I+ +H+ HH+ YV N +++L
Sbjct: 6 LKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRL 52
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 95 LLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
+L +D +EHAYYLQYKN + DY+ WNV+NW A QK
Sbjct: 166 ILILDEFEHAYYLQYKNKRADYVNAWWNVVNWDAAEKKLQK 206
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
LP LPY ALEP IS +I+ +H+ HH+ +V N +E+L
Sbjct: 11 LPPLPYKIDALEPYISKDIIDVHYNGHHKGFVNGANSLLERL 52
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 95 LLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
+L +D +EHAYYLQYKN + DY+ WNV+NW A QK
Sbjct: 166 ILILDEFEHAYYLQYKNKRADYVNAWWNVVNWDAAEKKLQK 206
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
LP LPY ALEP IS +I+ +H+ HH+ YV N +E+L
Sbjct: 11 LPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLLERL 52
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 135
L+PL+ ID +EHAYY+ YKN +P Y+ + +NW ++ ++K
Sbjct: 156 LIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFEK 199
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 43 AISGEIMQLHHQKHHQAYVTNYNKAVEQL 71
IS E ++ H + H++ YV YN+ E+L
Sbjct: 18 GISNEQIEPHFEAHYKGYVAKYNEIQEKL 46
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 78 VDTSTDPLVTKAPTLV---------PLLGIDVWEHAYYLQYKNVKPDYL 117
D +V K+P V PLL IDVWEHAYYL ++N +PDY+
Sbjct: 165 ADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYI 213
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 34 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 68
PY + LEP +S + ++ H KHH+ YV N K V
Sbjct: 25 PYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQV 59
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 73 QALNKVDTST--DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKY 128
+AL V T+ PL+T+ +PL +DVWEHAYYL Y N++ Y+ + +++NW +
Sbjct: 160 KALKVVSTANADSPLLTQGQ--LPLATMDVWEHAYYLDYLNLRKKYIDVFLEHLLNWDF 216
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 30 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK-AVEQLFQALNKVDTSTDPLVTK 88
L DLPY+ LEP IS ++ H+ HH+ YV NK V F+ L + S +V K
Sbjct: 25 LSDLPYE--GLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLG--NESLGDIVVK 80
Query: 89 ------APTLVPLLGIDVWEHAYYLQYKNVKPD 115
A + +W H +Y Q ++KP+
Sbjct: 81 AHNSGSAGRAIFNNAAQIWNHDFYWQ--SMKPN 111
>pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RR1|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RRA|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
pdb|3RRA|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
Length = 405
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 31 PDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTDPLVTKAP 90
P P AL + + + + Q+ +YNK E L NK D + + + P
Sbjct: 285 PHCPLGPIALAACLHVDFVSWNATLQEQSMGIHYNKGAELLDYVRNKADFALEGGYIRPP 344
Query: 91 TLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN 122
L P LG+D+ + A ++ PD+ +W
Sbjct: 345 RL-PGLGVDI-DEALVIERSKEAPDWRNPVWR 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,452,363
Number of Sequences: 62578
Number of extensions: 183770
Number of successful extensions: 940
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 188
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)