Query 032551
Match_columns 138
No_of_seqs 114 out of 1185
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02471 superoxide dismutase 100.0 5.4E-48 1.2E-52 313.0 11.4 138 1-138 1-231 (231)
2 COG0605 SodA Superoxide dismut 100.0 3.1E-46 6.8E-51 298.2 9.6 110 25-137 1-202 (204)
3 PRK10925 superoxide dismutase; 100.0 1.9E-44 4E-49 287.5 9.4 112 26-137 1-206 (206)
4 PRK10543 superoxide dismutase; 100.0 1.6E-43 3.5E-48 279.6 9.5 106 26-134 1-192 (193)
5 PLN02184 superoxide dismutase 100.0 2.9E-43 6.3E-48 282.0 10.7 110 25-137 8-208 (212)
6 KOG0876 Manganese superoxide d 100.0 6.8E-42 1.5E-46 277.2 10.5 129 9-137 9-230 (234)
7 PTZ00078 Superoxide dismutase 100.0 8.8E-42 1.9E-46 269.7 9.6 105 31-137 1-191 (193)
8 PLN02622 iron superoxide dismu 100.0 2.1E-41 4.5E-46 278.8 8.7 112 23-137 43-248 (261)
9 PLN02685 iron superoxide dismu 100.0 1.7E-40 3.7E-45 277.7 11.0 110 25-137 44-261 (299)
10 PF02777 Sod_Fe_C: Iron/mangan 99.9 1.8E-23 3.9E-28 150.4 3.6 48 83-133 59-106 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 99.9 2.8E-22 6.1E-27 139.4 3.9 45 27-71 1-45 (82)
12 COG4700 Uncharacterized protei 49.5 16 0.00034 30.3 2.6 21 50-70 227-247 (251)
13 COG2904 Uncharacterized protei 30.1 40 0.00087 25.8 2.0 43 92-135 47-116 (137)
14 PF04651 Pox_A12: Poxvirus A12 25.2 68 0.0015 25.9 2.6 21 56-76 10-30 (189)
15 PF07110 EthD: EthD domain; I 22.7 89 0.0019 20.3 2.5 25 42-66 1-25 (95)
16 TIGR02118 conserved hypothetic 22.3 79 0.0017 21.7 2.2 22 42-64 10-31 (100)
17 PF04930 FUN14: FUN14 family; 21.0 50 0.0011 23.2 1.0 15 123-137 44-58 (100)
No 1
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=5.4e-48 Score=313.03 Aligned_cols=138 Identities=78% Similarity=1.245 Sum_probs=115.2
Q ss_pred CchhhhhHHHhhhhhcccc---ccccccccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH--
Q 032551 1 MALRSLATRKAIGLGKSVG---LGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQAL-- 75 (138)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l~~~~-- 75 (138)
|.++-+++|+.+++++.++ ...+++++|+||+|||++++|||+||++||++||+|||++||+|||++++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~ 80 (231)
T PLN02471 1 MALRTLASRKTLGGLKETSSRLLSFRGLQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEK 80 (231)
T ss_pred CchHhhhhhhhhhhccccchhhhhhcccccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhccc
Confidence 7889999999999885554 56778899999999999999999999999999999999999999999998753210
Q ss_pred ------------------------------hc----CCC-C---------------------------------------
Q 032551 76 ------------------------------NK----VDT-S--------------------------------------- 81 (138)
Q Consensus 76 ------------------------------~~----~~~-~--------------------------------------- 81 (138)
.. +.. +
T Consensus 81 ~~~~~i~~~~~~~~~n~gg~~NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~ 160 (231)
T PLN02471 81 GDASAVVKLQSAIKFNGGGHVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGL 160 (231)
T ss_pred CCHHHHHhhhhhhhhHHHHHHhHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 00 001 0
Q ss_pred --------------CCCCcCCCCCcccceecccchhhhhhhhcCChHHHHHHHhhcCCHHHHHHHHHhhCC
Q 032551 82 --------------TDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 138 (138)
Q Consensus 82 --------------~~P~~~~g~~~~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~~vnW~~v~~r~~~a~~ 138 (138)
++|....|.+.+|||||||||||||+||||+|++||++||++|||++|++||+++|.
T Consensus 161 d~~~~~L~i~~t~n~d~~~~~~~~~~PiL~iDvWEHAYylDY~n~R~~Yi~~~w~~inW~~v~~r~~~~~~ 231 (231)
T PLN02471 161 DKELKKLVVETTANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYEKECN 231 (231)
T ss_pred eCCCCeEEEEeecCCCCCcccCCCCceEEEeechhhHhHHHhccCHHHHHHHHHHccCHHHHHHHHHhhcC
Confidence 444322332358999999999999999999999999999999999999999999883
No 2
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=298.21 Aligned_cols=110 Identities=50% Similarity=0.934 Sum_probs=95.1
Q ss_pred cccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHhcCC--------------CC---------
Q 032551 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD--------------TS--------- 81 (138)
Q Consensus 25 ~~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l~~~~~~~~--------------~~--------- 81 (138)
.|.|+||+|||+|+||||+||++||++||+||||+||+|||++++++++.+...+ +.
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~nn~~gh~NH 80 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPAALFNNAGGHWNH 80 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccHHHHhcchhhhhH
Confidence 3689999999999999999999999999999999999999999987542111100 00
Q ss_pred ---------------------------------------------------------------------CCCCcCCCCCc
Q 032551 82 ---------------------------------------------------------------------TDPLVTKAPTL 92 (138)
Q Consensus 82 ---------------------------------------------------------------------~~P~~~~g~~~ 92 (138)
++|++ .| .
T Consensus 81 ~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~~kL~i~~t~n~~~p~~-~~--~ 157 (204)
T COG0605 81 SLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPDGKLEIVSTYNQDTPLM-WG--S 157 (204)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECCCCcEEEEeccCCCCccc-CC--C
Confidence 35764 45 7
Q ss_pred ccceecccchhhhhhhhcCChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032551 93 VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 137 (138)
Q Consensus 93 ~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~~vnW~~v~~r~~~a~ 137 (138)
+|||||||||||||+||||+|++||++||++|||++|++||++|+
T Consensus 158 ~PiL~lDvWEHAYYldY~N~R~~Yv~afwnvVNW~~V~~r~~~a~ 202 (204)
T COG0605 158 VPLLGLDVWEHAYYLDYGNRRPDYVEAFWNVVNWDEVEERFEAAK 202 (204)
T ss_pred CceEEecchHHHHHHHhccCcHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999885
No 3
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=1.9e-44 Score=287.52 Aligned_cols=112 Identities=46% Similarity=0.892 Sum_probs=92.7
Q ss_pred ccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHH--------HHHHhc--------------------
Q 032551 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNK-------------------- 77 (138)
Q Consensus 26 ~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l--------~~~~~~-------------------- 77 (138)
|+|+||||||++++|||+||++||++||+|||++||++||++++++ ++++..
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~ 80 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHA 80 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHhhcCCHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999753 222110
Q ss_pred -----------CCCC---------------------------------------------------C-CCCcC---CCCC
Q 032551 78 -----------VDTS---------------------------------------------------T-DPLVT---KAPT 91 (138)
Q Consensus 78 -----------~~~~---------------------------------------------------~-~P~~~---~g~~ 91 (138)
+..+ + +|+.. .|.+
T Consensus 81 NH~~fw~~L~P~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~~~L~i~~t~N~~~p~~~~~~~~~~ 160 (206)
T PRK10925 81 NHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS 160 (206)
T ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEeCCEEEEEeccCCCCCccccccccCC
Confidence 0000 3 57642 1212
Q ss_pred cccceecccchhhhhhhhcCChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032551 92 LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 137 (138)
Q Consensus 92 ~~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~~vnW~~v~~r~~~a~ 137 (138)
.+|||||||||||||+||||+|++||++||++|||++|++||+++.
T Consensus 161 ~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~~inW~~v~~r~~~~~ 206 (206)
T PRK10925 161 GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK 206 (206)
T ss_pred CceeEEEechHHHhHHHHccCHHHHHHHHHhccCHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999998763
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=1.6e-43 Score=279.59 Aligned_cols=106 Identities=40% Similarity=0.828 Sum_probs=90.2
Q ss_pred ccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHH-------HHHHhc---------------------
Q 032551 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNK--------------------- 77 (138)
Q Consensus 26 ~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l-------~~~~~~--------------------- 77 (138)
|+|+||+|||++++|||+||++||++||+|||++||++||+++++. ++++..
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~~~~~l~~ii~~~~~~ifnna~g~~NH~lfw~~ 80 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSSEGGVFNNAAQVWNHTFYWNC 80 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999998741 222210
Q ss_pred ----CC-CC----------------------------------------------------C-CCCcCCCCCcccceecc
Q 032551 78 ----VD-TS----------------------------------------------------T-DPLVTKAPTLVPLLGID 99 (138)
Q Consensus 78 ----~~-~~----------------------------------------------------~-~P~~~~g~~~~PlL~iD 99 (138)
+. .+ + +|+. .| .+||||||
T Consensus 81 L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~~~~L~I~~t~n~~~p~~-~~--~~PlL~lD 157 (193)
T PRK10543 81 LAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNADGKLAIVSTSNAGTPLT-TD--ATPLLTVD 157 (193)
T ss_pred cCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECCCCCEEEEeccCCCCCcC-CC--CEeEEEEe
Confidence 00 00 3 4663 45 79999999
Q ss_pred cchhhhhhhhcCChHHHHHHHhhcCCHHHHHHHHH
Q 032551 100 VWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 134 (138)
Q Consensus 100 vWEHAYyldY~n~R~~Yi~~fw~~vnW~~v~~r~~ 134 (138)
|||||||+||||+|++||++||++|||++|++||+
T Consensus 158 vWEHAYyldY~n~r~~Yv~~~w~~inW~~v~~r~~ 192 (193)
T PRK10543 158 VWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLA 192 (193)
T ss_pred cchhhhHHHhccCHHHHHHHHHhccCHHHHHHHhc
Confidence 99999999999999999999999999999999996
No 5
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=2.9e-43 Score=281.98 Aligned_cols=110 Identities=37% Similarity=0.681 Sum_probs=92.7
Q ss_pred cccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHH-------HHHHHhc--------------------
Q 032551 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNK-------------------- 77 (138)
Q Consensus 25 ~~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~-------l~~~~~~-------------------- 77 (138)
.++|+||||||++++|||+||++||++||+|||++||++||+++++ +++++..
T Consensus 8 ~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~~~~~l~~ii~~~~~~~~~~~ifnnagg~~NH 87 (212)
T PLN02184 8 TANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNH 87 (212)
T ss_pred ccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcccchHHHHHHhHHHHHHH
Confidence 4689999999999999999999999999999999999999998864 2222210
Q ss_pred ----------CC-CC---------------------------------------------------C-CCCcCCCCCccc
Q 032551 78 ----------VD-TS---------------------------------------------------T-DPLVTKAPTLVP 94 (138)
Q Consensus 78 ----------~~-~~---------------------------------------------------~-~P~~~~g~~~~P 94 (138)
+. .+ + +|+. .| .+|
T Consensus 88 ~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~~~L~i~~t~n~~~P~~-~~--~~P 164 (212)
T PLN02184 88 EFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLV-LG--SFP 164 (212)
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEECCEEEEEeecCCCCCcc-CC--Cee
Confidence 00 00 3 6764 45 699
Q ss_pred ceecccchhhhhhhhcCChHHHHHHHhh-cCCHHHHHHHHHhhC
Q 032551 95 LLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKEC 137 (138)
Q Consensus 95 lL~iDvWEHAYyldY~n~R~~Yi~~fw~-~vnW~~v~~r~~~a~ 137 (138)
||||||||||||+||||+|++||++||+ +|||++|++||.++.
T Consensus 165 lL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~ 208 (212)
T PLN02184 165 LLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAK 208 (212)
T ss_pred EEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHh
Confidence 9999999999999999999999999996 999999999998763
No 6
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-42 Score=277.15 Aligned_cols=129 Identities=52% Similarity=0.871 Sum_probs=103.6
Q ss_pred HHhhhhhccccccccccccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHhcC----------
Q 032551 9 RKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV---------- 78 (138)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l~~~~~~~---------- 78 (138)
....+.++.......+...+.||+|||++++|||.||+++|++||+|||++||++||+++++.+++....
T Consensus 9 ~~~~~~~~~~~~~~~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~t~~~ 88 (234)
T KOG0876|consen 9 HLKKRRSLKLLFSLAVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSLTAIA 88 (234)
T ss_pred HHHhhcccceeeheeeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhHhccC
Confidence 3333333333334455679999999999999999999999999999999999999999998754221110
Q ss_pred -----------CC-C-----------------------------------------------------------------
Q 032551 79 -----------DT-S----------------------------------------------------------------- 81 (138)
Q Consensus 79 -----------~~-~----------------------------------------------------------------- 81 (138)
.. .
T Consensus 89 ~~~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i 168 (234)
T KOG0876|consen 89 PQPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFI 168 (234)
T ss_pred hhhhhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEE
Confidence 00 0
Q ss_pred -----C-CCCcCCCCCcccceecccchhhhhhhhcCChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032551 82 -----T-DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 137 (138)
Q Consensus 82 -----~-~P~~~~g~~~~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~~vnW~~v~~r~~~a~ 137 (138)
| ||+...+++.+|||||||||||||+||+|+|++||++||++|||+.|++||+++.
T Consensus 169 ~~T~Na~~P~~~~t~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd~inW~~v~~R~~~~k 230 (234)
T KOG0876|consen 169 LTTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWDVINWKVVSERFEAAK 230 (234)
T ss_pred EecCCCCCCeeccCCCccceEEEecchhHhHHHhccchHHHHHHHHHHhcHHHHHHHHHHhh
Confidence 5 8886444448999999999999999999999999999999999999999999763
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=8.8e-42 Score=269.69 Aligned_cols=105 Identities=33% Similarity=0.724 Sum_probs=88.6
Q ss_pred CCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHH-------HHHHhc-------------------------C
Q 032551 31 PDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNK-------------------------V 78 (138)
Q Consensus 31 p~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l-------~~~~~~-------------------------~ 78 (138)
|||||++++|||+||++||++||+|||++||++||++++++ ++++.. +
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~~~~~~~~ii~~~~~~~~n~a~g~~NH~lfw~~L~p~g 80 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYSGAVFNNAAQIWNHNFYWLSMGPNG 80 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999999998753 122110 0
Q ss_pred C-CC----------------------------------------------------C-CCCcCCCCCcccceecccchhh
Q 032551 79 D-TS----------------------------------------------------T-DPLVTKAPTLVPLLGIDVWEHA 104 (138)
Q Consensus 79 ~-~~----------------------------------------------------~-~P~~~~g~~~~PlL~iDvWEHA 104 (138)
. .+ + +|+...+ .+|||||||||||
T Consensus 81 ~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~~~~L~i~~t~n~~~p~~~~~--~~PlL~lDvWEHA 158 (193)
T PTZ00078 81 GGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKNDGKLEIVQTHDAGNPIKDNT--GKPLLTCDIWEHA 158 (193)
T ss_pred CCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECCCCcEEEEeccCCCCCccCCC--CceEEEeccchhh
Confidence 0 00 3 4663223 5999999999999
Q ss_pred hhhhhcCChHHHHHHHhhcCCHHHHHHHHHhhC
Q 032551 105 YYLQYKNVKPDYLKNIWNVMNWKYASDVYQKEC 137 (138)
Q Consensus 105 YyldY~n~R~~Yi~~fw~~vnW~~v~~r~~~a~ 137 (138)
||+||||+|++||++||++|||++|++||++|+
T Consensus 159 YyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~ 191 (193)
T PTZ00078 159 YYIDYRNDRASYVNSWWNKVNWDFANKNLKKLM 191 (193)
T ss_pred hHHHHccCHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999886
No 8
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=2.1e-41 Score=278.80 Aligned_cols=112 Identities=31% Similarity=0.572 Sum_probs=94.0
Q ss_pred cccccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHH--------HHHHhc-----------------
Q 032551 23 RGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNK----------------- 77 (138)
Q Consensus 23 ~~~~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l--------~~~~~~----------------- 77 (138)
+..++|+||+|||++++|||+||++||++||+|||++||++||+++++. ++++..
T Consensus 43 ~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vfnna~g~ 122 (261)
T PLN02622 43 KVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFNNAAQV 122 (261)
T ss_pred cccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHHHHHHhH
Confidence 4467899999999999999999999999999999999999999998642 222100
Q ss_pred -------------CC-CC------------------------------------------------------CCCCcCCC
Q 032551 78 -------------VD-TS------------------------------------------------------TDPLVTKA 89 (138)
Q Consensus 78 -------------~~-~~------------------------------------------------------~~P~~~~g 89 (138)
+. .+ ++|+. .|
T Consensus 123 ~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~~~g~L~I~~t~N~~~Pl~-~~ 201 (261)
T PLN02622 123 WNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREERRLEVVKTSNAINPLV-WD 201 (261)
T ss_pred HHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEecCCCCCCcc-CC
Confidence 00 00 35764 45
Q ss_pred CCcccceecccchhhhhhhhcCChHHHHHHHhh-cCCHHHHHHHHHhhC
Q 032551 90 PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKEC 137 (138)
Q Consensus 90 ~~~~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~-~vnW~~v~~r~~~a~ 137 (138)
.+|||||||||||||+||||+|++||++||+ +|||++|++||.+|.
T Consensus 202 --~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v~~R~~~~~ 248 (261)
T PLN02622 202 --DIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARAE 248 (261)
T ss_pred --CEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHHHHHHHHhh
Confidence 6999999999999999999999999999998 799999999998763
No 9
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=1.7e-40 Score=277.71 Aligned_cols=110 Identities=37% Similarity=0.652 Sum_probs=90.7
Q ss_pred cccccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHH-------HHHHHhc--------------------
Q 032551 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNK-------------------- 77 (138)
Q Consensus 25 ~~~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~-------l~~~~~~-------------------- 77 (138)
.++|+||+|||++++|||+||++||++||+|||++||+|||+++++ +++++..
T Consensus 44 ~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~t~l~~~sl~eii~~~~~~~~~~~ifNnaggh~NH 123 (299)
T PLN02685 44 TAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLITYNKGDMLPAFNNAAQAWNH 123 (299)
T ss_pred ccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcCchhhcCCHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998864 1222210
Q ss_pred ----------CC-CC--------------------------------------C--------------------------
Q 032551 78 ----------VD-TS--------------------------------------T-------------------------- 82 (138)
Q Consensus 78 ----------~~-~~--------------------------------------~-------------------------- 82 (138)
+. .+ .
T Consensus 124 ~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np~~~~~~~~L~i~~ 203 (299)
T PLN02685 124 EFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLVVVK 203 (299)
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccccccccCCceeEEe
Confidence 00 00 1
Q ss_pred -----CCCcCCCCCcccceecccchhhhhhhhcCChHHHHHHHhh-cCCHHHHHHHHHhhC
Q 032551 83 -----DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWKYASDVYQKEC 137 (138)
Q Consensus 83 -----~P~~~~g~~~~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~-~vnW~~v~~r~~~a~ 137 (138)
+|+ ..| .+|||||||||||||+||||+|++||++||+ +|||++|++||.+|.
T Consensus 204 t~n~d~pl-~~~--~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~vINW~~V~~R~~~a~ 261 (299)
T PLN02685 204 SPNAVNPL-VWD--YSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAK 261 (299)
T ss_pred ccCCCCCc-cCC--CEeEEEEecchhhhHHHhccChHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 122 123 6999999999999999999999999999998 799999999998763
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=99.88 E-value=1.8e-23 Score=150.36 Aligned_cols=48 Identities=52% Similarity=1.130 Sum_probs=43.7
Q ss_pred CCCcCCCCCcccceecccchhhhhhhhcCChHHHHHHHhhcCCHHHHHHHH
Q 032551 83 DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 133 (138)
Q Consensus 83 ~P~~~~g~~~~PlL~iDvWEHAYyldY~n~R~~Yi~~fw~~vnW~~v~~r~ 133 (138)
+|+ ..| .+||||||+||||||+||+|+|++||++||++|||++|++||
T Consensus 59 ~p~-~~~--~~Pll~iD~weHaY~~dy~~~r~~Yv~~~~~~inW~~v~~r~ 106 (106)
T PF02777_consen 59 TPI-IWG--LIPLLCIDVWEHAYYLDYGNKRADYVEAFWNVINWEVVEKRY 106 (106)
T ss_dssp BGG-GGT--EEEEEEEE-SGGGTHHHHTTHHHHHHHHHGGGBBHHHHHHHH
T ss_pred ccc-chh--hccchhhhhhHHHHHHHHhccHHHHHHHHHHHcCHHHHHhhC
Confidence 465 346 899999999999999999999999999999999999999998
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.85 E-value=2.8e-22 Score=139.45 Aligned_cols=45 Identities=62% Similarity=0.992 Sum_probs=37.4
Q ss_pred cccCCCCCCCcCcccccccHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 032551 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71 (138)
Q Consensus 27 ~f~Lp~LpY~~~aLeP~IS~~t~~~Hy~kHh~~YV~~LN~~~~~l 71 (138)
+|+||+|||+|+||||+||++||++||+|||++||++||++++++
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~ 45 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKT 45 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999999999875
No 12
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=49.46 E-value=16 Score=30.35 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.1
Q ss_pred HHhHhhhHHHHHHHHHHHHHH
Q 032551 50 QLHHQKHHQAYVTNYNKAVEQ 70 (138)
Q Consensus 50 ~~Hy~kHh~~YV~~LN~~~~~ 70 (138)
.-||.|||+++++..|..+.+
T Consensus 227 ~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHh
Confidence 369999999999999987764
No 13
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.12 E-value=40 Score=25.79 Aligned_cols=43 Identities=28% Similarity=0.601 Sum_probs=29.7
Q ss_pred cccceecccchhhhhhhhcCCh-------------------------HHHHHHHh--hcCCHHHHHHHHHh
Q 032551 92 LVPLLGIDVWEHAYYLQYKNVK-------------------------PDYLKNIW--NVMNWKYASDVYQK 135 (138)
Q Consensus 92 ~~PlL~iDvWEHAYyldY~n~R-------------------------~~Yi~~fw--~~vnW~~v~~r~~~ 135 (138)
.-|..|+|+| ++|=|.+-|.+ .=|+..|= .+-+|+.|.+++.+
T Consensus 47 ~lpf~G~DiW-~~YElSwLn~~G~PqVaig~~~ip~dS~NlIESKSFKLYLNSfNqt~f~s~e~v~~~l~~ 116 (137)
T COG2904 47 NLPFHGADIW-TLYELSWLNAKGLPQVAIGTVYIPADSPNLIESKSFKLYLNSFNQTKFASWEEVRQTLQR 116 (137)
T ss_pred CCCccccchh-hhhhhhhhccCCCceEEEEEEEecCCCccccccchhhhhhhhcchHhhccHHHHHHHHHH
Confidence 4789999999 35544443322 23787774 47789999998864
No 14
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=25.22 E-value=68 Score=25.87 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 032551 56 HHQAYVTNYNKAVEQLFQALN 76 (138)
Q Consensus 56 Hh~~YV~~LN~~~~~l~~~~~ 76 (138)
-|.+||+.+|++..+|..+++
T Consensus 10 SYDDYIeTinKitPQLrtlLa 30 (189)
T PF04651_consen 10 SYDDYIETINKITPQLRTLLA 30 (189)
T ss_pred cHHHHHHHHHHhCHHHHHHHH
Confidence 567899999999998877653
No 15
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=22.72 E-value=89 Score=20.34 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=18.7
Q ss_pred ccccHHHHHHhHhhhHHHHHHHHHH
Q 032551 42 PAISGEIMQLHHQKHHQAYVTNYNK 66 (138)
Q Consensus 42 P~IS~~t~~~Hy~kHh~~YV~~LN~ 66 (138)
|.+|.+.+.-||...|..-|..+=.
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~~~ 25 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRLPG 25 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHhcc
Confidence 7899999999999999988876543
No 16
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=22.27 E-value=79 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.3
Q ss_pred ccccHHHHHHhHhhhHHHHHHHH
Q 032551 42 PAISGEIMQLHHQKHHQAYVTNY 64 (138)
Q Consensus 42 P~IS~~t~~~Hy~kHh~~YV~~L 64 (138)
| +|.++++.||..+|..-+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999887765
No 17
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=20.95 E-value=50 Score=23.17 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHhhC
Q 032551 123 VMNWKYASDVYQKEC 137 (138)
Q Consensus 123 ~vnW~~v~~r~~~a~ 137 (138)
.|||+.+++.++++.
T Consensus 44 ~Vnw~kl~~~~~~~~ 58 (100)
T PF04930_consen 44 KVNWDKLEKDVKKAL 58 (100)
T ss_pred EECHHHHHHHHHHHH
Confidence 699999999887653
Done!