BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032553
         (138 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinase 1 OS=Rattus
           norvegicus GN=Map3k1 PE=1 SV=1
          Length = 1493

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 24  QPVSDRIARALRHQLLLLHRSDSLFFVLGATA--NVYTVNLSSNPSCTCPDRVTPCKHIL 81
           +  S R+ + +R +L LL +     F++G  +  N Y V +    +C+C  R T C H+L
Sbjct: 292 EETSRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQ-NCSC-GRGTFCIHLL 349

Query: 82  FVFMRVLGVSPDDKCLRRRTLRPCQLSRLL 111
           FV +RV  + P D  L R+TL+  ++  L 
Sbjct: 350 FVMLRVFQLEPSDPMLWRKTLKNFEVESLF 379


>sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens
           GN=MAP3K1 PE=1 SV=4
          Length = 1512

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 29  RIARALRHQLLLLHRSDSLFFVLGATA--NVYTVNLSSNPSCTCPDRVTPCKHILFVFMR 86
           R+ + +R +L LL +     F++G  +  N Y V +    +C+C  R T C H+LFV +R
Sbjct: 307 RVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQ-NCSCA-RGTFCIHLLFVMLR 364

Query: 87  VLGVSPDDKCLRRRTLRPCQLSRLL 111
           V  + P D  L R+TL+  ++  L 
Sbjct: 365 VFQLEPSDPMLWRKTLKNFEVESLF 389


>sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kinase 1 OS=Mus musculus
           GN=Map3k1 PE=1 SV=3
          Length = 1493

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 24  QPVSDRIARALRHQLLLLHRSDSLFFVLGATA--NVYTVNLSSNPSCTCPDRVTPCKHIL 81
           +  S R+ + +R +L LL +     F++G  +  N Y V +    +C+C  R   C H+L
Sbjct: 297 EETSRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQ-NCSC-GRGAFCIHLL 354

Query: 82  FVFMRVLGVSPDDKCLRRRTLRPCQLSRLL 111
           FV +RV  + P D  L R+TL+  ++  L 
Sbjct: 355 FVMLRVFQLEPSDPMLWRKTLKNFEVESLF 384


>sp|Q6L126|RADA_PICTO DNA repair and recombination protein RadA OS=Picrophilus torridus
           (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
           100828) GN=radA PE=3 SV=1
          Length = 323

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 33  ALRHQLLLLHRSDSLFFVLGATANVYTVN-LSSNPSCTCPDRVTPCKHILFVFMRVLGVS 91
           A R QLL  H  D L F     A +   N +S+NP+    D + P      +   ++G +
Sbjct: 226 AERQQLLNRHMHDLLKFGTIYNAVIAVTNQVSANPAVFFGDPMNP------IGGNIVGHT 279

Query: 92  PDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRE 127
              +   R+     +++RL+ +P LPE     T+ E
Sbjct: 280 ATFRIYLRKAKAGKRIARLIDSPYLPEGETVITITE 315


>sp|Q9VL72|SMRCD_DROME SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 homolog
           OS=Drosophila melanogaster GN=Etl1 PE=1 SV=1
          Length = 844

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 16  RHRRFGLTQPVSDRIARALRHQLLL-LHRSDSLF-FVLGATANVYTVNLSSNPSCTCPDR 73
           R R+FG  + +    A  +R  L+   +  DS+F F+L   A    +NL++  +C   D 
Sbjct: 689 RIRKFGFCR-LDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHD- 746

Query: 74  VTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAM 120
                     F        +D+C R    RP  + RL+S  T+ E +
Sbjct: 747 --------IDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGI 785


>sp|Q62796|RBP1_RAT RalA-binding protein 1 OS=Rattus norvegicus GN=Ralbp1 PE=1 SV=3
          Length = 647

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 39  LLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLR 98
           L++H    +   L    N+  +++  +P+    +RV    ++LF  ++ L  +     L 
Sbjct: 321 LIVHMDHVIAKELETKMNIQNISIVLSPTVQISNRVL---YVLFTHVQELFGT----VLL 373

Query: 99  RRTLRPCQLSRLLSTPTLPEAMAG 122
           ++  RP + S + + PTLPE  AG
Sbjct: 374 KQVTRPLRWSNMATMPTLPETQAG 397


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,772,070
Number of Sequences: 539616
Number of extensions: 1711473
Number of successful extensions: 4250
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4247
Number of HSP's gapped (non-prelim): 8
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)