Query 032553
Match_columns 138
No_of_seqs 110 out of 195
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e50_C Protransforming growth 35.8 15 0.00052 22.4 1.4 17 64-80 28-46 (50)
2 3nis_A E3 ubiquitin-protein li 25.4 28 0.00097 23.4 1.4 19 54-72 46-67 (82)
3 2lc4_A PILP protein; type IV p 23.0 72 0.0025 22.6 3.3 29 36-64 29-60 (111)
4 3oq9_A Tumor necrosis factor r 20.9 1.3E+02 0.0045 20.0 4.1 41 95-136 17-58 (86)
5 2y4x_A PILP protein; biosynthe 20.4 76 0.0026 21.6 2.8 29 36-64 22-53 (93)
6 1iox_A Betacellulin; EGF-like 20.4 33 0.0011 20.6 0.9 16 65-80 29-46 (50)
7 1uiz_A MIF, macrophage migrati 19.3 57 0.0019 21.7 2.0 70 24-94 17-94 (115)
8 3b64_A Macrophage migration in 18.8 85 0.0029 20.8 2.8 70 24-94 16-94 (112)
9 1hfo_A Migration inhibitory fa 17.1 69 0.0023 21.2 2.0 70 24-94 16-93 (113)
10 2xpn_B SPT6, chromatin structu 17.0 1.1E+02 0.0039 16.4 2.4 19 48-67 6-24 (26)
No 1
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=35.85 E-value=15 Score=22.44 Aligned_cols=17 Identities=29% Similarity=0.876 Sum_probs=14.1
Q ss_pred CCCcccCCC--CCCCceeh
Q 032553 64 SNPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 64 ~~psCtCpd--~g~~CKHI 80 (138)
+.++|.|+. .|..|-|.
T Consensus 28 ~~~~C~C~~gy~G~RCe~~ 46 (50)
T 3e50_C 28 DKPACVCHSGYVGARCEHA 46 (50)
T ss_pred CCeEEECCCCCcccCCCce
Confidence 458999999 78999764
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=25.40 E-value=28 Score=23.38 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=14.9
Q ss_pred CCCeEEEEcC---CCCcccCCC
Q 032553 54 TANVYTVNLS---SNPSCTCPD 72 (138)
Q Consensus 54 tgnvY~V~Ig---~~psCtCpd 72 (138)
.|..|.+.+. ..-.|+|.|
T Consensus 46 ~gH~~~~~~s~~~~gG~CDCGD 67 (82)
T 3nis_A 46 VNHHVCTDICTEFTSGICDCGD 67 (82)
T ss_dssp TTSCEEEEECCSSEEEBCCTTC
T ss_pred CCceEEEEEecCCCCcEecCCC
Confidence 5667888886 357999999
No 3
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=22.97 E-value=72 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=20.5
Q ss_pred cceEEEe---ecCceeEEeccCCCeEEEEcCC
Q 032553 36 HQLLLLH---RSDSLFFVLGATANVYTVNLSS 64 (138)
Q Consensus 36 ~rm~ll~---r~~~~f~V~gstgnvY~V~Ig~ 64 (138)
..|-++. +.+..+.++..+|.+|+|..|+
T Consensus 29 d~L~mvG~l~~~~~~~ALV~~dG~vyrVk~G~ 60 (111)
T 2lc4_A 29 ETFEMVGTLSNAQGTFALVKGAGGVHRVRVGD 60 (111)
T ss_dssp SSCEEEEEEEETTEEEEEEEETTEEEEEETTC
T ss_pred hheEEEEEEccCCeEEEEEEeCCcEEEEccCC
Confidence 3455544 3456666666899999999987
No 4
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=20.90 E-value=1.3e+02 Score=20.01 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=28.9
Q ss_pred hhhhhccCCHHHHHHhhcC-CCCccccccHHHHHHHHHhcCCC
Q 032553 95 KCLRRRTLRPCQLSRLLST-PTLPEAMAGATLRERFHQLFFPS 136 (138)
Q Consensus 95 ~l~~Q~aL~~~El~~il~~-p~~~~~~a~~~~~~~~~~~~g~~ 136 (138)
.+..+++|.+.+|++|-.. |.+.. -.--.+..+|.+..|..
T Consensus 17 ~~~R~LGlse~~Id~I~~~~~~d~~-Eq~~qmL~~W~~~~g~~ 58 (86)
T 3oq9_A 17 KFARENNIKEGKIDEIMHDSIQDTA-EQKVQLLLCWYQSHGKS 58 (86)
T ss_dssp HHHHTTTSCHHHHHHHHHTCTTCCT-THHHHHHHHHHHHSCSS
T ss_pred HHHHHcCCCHhHHHHHHHhCCCChH-HHHHHHHHHHHHHhCcc
Confidence 4678899999999999954 44444 33445667777777764
No 5
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=20.38 E-value=76 Score=21.61 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=20.2
Q ss_pred cceEEEe---ecCceeEEeccCCCeEEEEcCC
Q 032553 36 HQLLLLH---RSDSLFFVLGATANVYTVNLSS 64 (138)
Q Consensus 36 ~rm~ll~---r~~~~f~V~gstgnvY~V~Ig~ 64 (138)
..|-++. +.+..+.++-.+|.+|+|..|+
T Consensus 22 ~~L~mvG~l~~~~~~~ALV~~dg~v~~V~~G~ 53 (93)
T 2y4x_A 22 ETFEMVGTLSNAQGTFALVKGAGGVHRVRVGD 53 (93)
T ss_dssp GGCEEEEEEEETTEEEEEEEETTEEEEECTTC
T ss_pred hheEEEEEEccCCeEEEEEEeCCCEEEEccCC
Confidence 3455544 3455666665899999999987
No 6
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=20.37 E-value=33 Score=20.63 Aligned_cols=16 Identities=31% Similarity=0.951 Sum_probs=13.6
Q ss_pred CCcccCCC--CCCCceeh
Q 032553 65 NPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 65 ~psCtCpd--~g~~CKHI 80 (138)
.++|.|+. .|..|-|.
T Consensus 29 ~~~C~C~~gy~G~RCe~~ 46 (50)
T 1iox_A 29 TPSCVCDEGYIGARCERV 46 (50)
T ss_dssp EEEECCCTTEETTTTCEE
T ss_pred CeEEECCCCcccCCCCee
Confidence 58999999 78899775
No 7
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=19.29 E-value=57 Score=21.72 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhh-------cceEEEeecCceeEEeccCCCeEEEEcCCCCcccCCC-CCCCceehhHHHHHHhcCCCCc
Q 032553 24 QPVSDRIARALR-------HQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPD-RVTPCKHILFVFMRVLGVSPDD 94 (138)
Q Consensus 24 ~~v~~r~~RAl~-------~rm~ll~r~~~~f~V~gstgnvY~V~Ig~~psCtCpd-~g~~CKHI~~VllkVL~~p~~~ 94 (138)
+.+.+.+.+|+. ..+.+.-..+..+..-|++.+.+-|.|.....=| ++ |..+.+-|.-.+-+.|++|.++
T Consensus 17 ~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~~-~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 1uiz_A 17 DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIG-GPQNKSYTKLLCDILTKQLNIPANR 94 (115)
T ss_dssp TTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCS-HHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHCcChhHEEEEEECCcceEECCCCCCeEEEEEEEecCCC-HHHHHHHHHHHHHHHHHHhCcCcce
Confidence 345555555553 3344444445566677787776666665432112 33 5567777777888888888753
No 8
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=18.84 E-value=85 Score=20.76 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhh-c-------ceEEEeecCceeEEeccCCCeEEEEcCCCCcccCCC-CCCCceehhHHHHHHhcCCCCc
Q 032553 24 QPVSDRIARALR-H-------QLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPD-RVTPCKHILFVFMRVLGVSPDD 94 (138)
Q Consensus 24 ~~v~~r~~RAl~-~-------rm~ll~r~~~~f~V~gstgnvY~V~Ig~~psCtCpd-~g~~CKHI~~VllkVL~~p~~~ 94 (138)
+.+.+.+.+|+. + .+.|.-+.+..+..-|++.+.+-|.|.....=| ++ |....+-|.-.|-+.|+++.++
T Consensus 16 ~~l~~~~~~~l~~~~~gkPe~~~~v~~~~~~~~~~~G~~~~~~~i~i~~~~g~~-~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (112)
T 3b64_A 16 RENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYG-PSEPEKVTSIVTAAITKECGIVADR 94 (112)
T ss_dssp HHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCC-TTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCHHHEEEEEeCCceEEECCCCCCEEEEEEEEcCCCC-HHHHHHHHHHHHHHHHHHhCcCcce
Confidence 345555555555 2 222322334455555777776666665533222 44 6677888888888999998754
No 9
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=17.09 E-value=69 Score=21.15 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhh-------cceEEEeecCceeEEeccCCCeEEEEcCCCCcccCCC-CCCCceehhHHHHHHhcCCCCc
Q 032553 24 QPVSDRIARALR-------HQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPD-RVTPCKHILFVFMRVLGVSPDD 94 (138)
Q Consensus 24 ~~v~~r~~RAl~-------~rm~ll~r~~~~f~V~gstgnvY~V~Ig~~psCtCpd-~g~~CKHI~~VllkVL~~p~~~ 94 (138)
+.+.+.+.+|+. ..+.|.-+.+..+..-|++.+.+-|.|.....=| ++ |....+-|.-.+-+.|++|.++
T Consensus 16 ~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~~~~~~~i~i~~~~g~~-~eqk~~l~~~i~~~l~~~lgi~~~~ 93 (113)
T 1hfo_A 16 SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIE-PSRNRDHSAKLFDHLNTKLGIPKNR 93 (113)
T ss_dssp TTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSSCS-HHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCCCCCeEEEEEEEecCCC-HHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 345555555553 2333433445566666777776666665432112 33 5567777777888888888753
No 10
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=17.04 E-value=1.1e+02 Score=16.39 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=12.9
Q ss_pred eEEeccCCCeEEEEcCCCCc
Q 032553 48 FFVLGATANVYTVNLSSNPS 67 (138)
Q Consensus 48 f~V~gstgnvY~V~Ig~~ps 67 (138)
|+|.| +|+-|.-.+.+.++
T Consensus 6 yEIFG-tG~EYrYile~~~s 24 (26)
T 2xpn_B 6 FEIFG-TGEEYRYVLESDPX 24 (26)
T ss_pred EEEec-CCceEEEEeecCCC
Confidence 55666 47778888777554
Done!