Query 032553
Match_columns 138
No_of_seqs 110 out of 195
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 04:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032553.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032553hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i9aa1 g.3.11.1 (A:10-49) Pla 60.2 1 7.6E-05 25.5 0.4 16 63-78 17-34 (40)
2 d3egfa_ g.3.11.1 (A:) Epiderma 50.5 2.9 0.00021 24.4 1.3 26 55-80 18-45 (53)
3 d1k36a_ g.3.11.1 (A:) Epiregul 44.1 1.7 0.00012 25.1 -0.6 17 65-81 27-45 (46)
4 d1a8da1 b.29.1.6 (A:1-247) Tet 33.6 5.4 0.0004 27.6 0.7 26 90-115 221-246 (247)
5 d1ioxa_ g.3.11.1 (A:) Betacell 30.0 7.8 0.00057 22.3 0.8 16 65-80 29-46 (50)
6 d1nqlb_ g.3.11.1 (B:) Epiderma 29.9 4.9 0.00036 22.9 -0.1 21 60-80 21-43 (48)
7 d1moxc_ g.3.11.1 (C:) Transfor 28.4 3.9 0.00028 23.7 -0.8 16 65-80 28-45 (49)
8 d1r1fa_ g.3.3.4 (A:) Palicoure 25.0 12 0.00086 20.3 0.9 15 65-79 18-33 (37)
9 d1g1sa2 g.3.11.1 (A:119-158) E 24.8 8.2 0.0006 21.0 0.2 21 60-80 16-38 (40)
10 d1xdtr_ g.3.11.1 (R:) Heparin- 24.4 8 0.00058 21.6 0.1 21 59-80 18-40 (41)
11 d1saca_ b.29.1.5 (A:) Serum am 23.3 17 0.0013 24.5 1.8 25 91-115 153-177 (204)
12 d2vpaa1 b.45.1.1 (A:2-195) Nim 22.5 64 0.0047 22.2 5.0 39 5-43 5-43 (194)
13 d1epwa1 b.29.1.6 (A:862-1079) 20.6 10 0.00076 24.9 0.1 20 93-112 195-214 (218)
14 d1b09a_ b.29.1.5 (A:) C-reacti 20.3 18 0.0013 24.2 1.4 25 89-113 153-177 (206)
No 1
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.22 E-value=1 Score=25.54 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=13.0
Q ss_pred CCCCcccCCC--CCCCce
Q 032553 63 SSNPSCTCPD--RVTPCK 78 (138)
Q Consensus 63 g~~psCtCpd--~g~~CK 78 (138)
++...|+||+ .|.+|.
T Consensus 17 S~I~rC~CPk~f~G~HCE 34 (40)
T d2i9aa1 17 SNIHWCNCPKKFGGQHCE 34 (40)
T ss_dssp TTCEEEECCTTEESTTSC
T ss_pred cCCEEecCCcccCceeEE
Confidence 4568999999 688885
No 2
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.47 E-value=2.9 Score=24.41 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcccCCC--CCCCceeh
Q 032553 55 ANVYTVNLSSNPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 55 gnvY~V~Ig~~psCtCpd--~g~~CKHI 80 (138)
|.-+.+.....++|.||. .|..|.|.
T Consensus 18 G~C~~~~~~~~~~C~C~~gy~G~~Ce~~ 45 (53)
T d3egfa_ 18 GVCMHIESLDSYTCNCVIGYSGDRCQTR 45 (53)
T ss_dssp CEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred cEeeccCCCCCeEeECCCCCcCCCCccC
Confidence 343444455579999999 89999885
No 3
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.12 E-value=1.7 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.679 Sum_probs=14.8
Q ss_pred CCcccCCC--CCCCceehh
Q 032553 65 NPSCTCPD--RVTPCKHIL 81 (138)
Q Consensus 65 ~psCtCpd--~g~~CKHI~ 81 (138)
.++|.|+. .|+.|-|+.
T Consensus 27 ~~~C~C~~gY~G~RCe~~~ 45 (46)
T d1k36a_ 27 QNYCRCEVGYTGVRCEHFF 45 (46)
T ss_dssp EEEEEECTTCSSTTSCCCC
T ss_pred ccEeECCCCceecCceeee
Confidence 58999999 899999974
No 4
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}
Probab=33.64 E-value=5.4 Score=27.57 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCCCchhhhhccCCHHHHHHhhcCCC
Q 032553 90 VSPDDKCLRRRTLRPCQLSRLLSTPT 115 (138)
Q Consensus 90 ~p~~~~l~~Q~aL~~~El~~il~~p~ 115 (138)
..-++-.+|.++|...||.+++++..
T Consensus 221 G~Idd~~iynraLs~~EI~~lYna~l 246 (247)
T d1a8da1 221 VSIDKFRIFCKALNPKEIEKLYTSYL 246 (247)
T ss_dssp EEEEEEEEESSCCCHHHHHHHHHTTC
T ss_pred EEeeEEEEECCCCCHHHHHHHHhhhc
Confidence 34566789999999999999998754
No 5
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.99 E-value=7.8 Score=22.33 Aligned_cols=16 Identities=31% Similarity=0.951 Sum_probs=14.1
Q ss_pred CCcccCCC--CCCCceeh
Q 032553 65 NPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 65 ~psCtCpd--~g~~CKHI 80 (138)
.++|.|+. .|..|-|.
T Consensus 29 ~~~C~C~~gy~G~rCe~~ 46 (50)
T d1ioxa_ 29 TPSCVCDEGYIGARCERV 46 (50)
T ss_dssp EEEECCCTTEETTTTCEE
T ss_pred CcEeECCCCCeeCCCccc
Confidence 58999999 89999986
No 6
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.88 E-value=4.9 Score=22.85 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=16.0
Q ss_pred EEcCCCCcccCCC--CCCCceeh
Q 032553 60 VNLSSNPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 60 V~Ig~~psCtCpd--~g~~CKHI 80 (138)
+.....++|.|+. .|..|-|.
T Consensus 21 ~~~~~~~~C~C~~gy~G~~Ce~~ 43 (48)
T d1nqlb_ 21 IEALDKYACNCVVGYIGERCQYR 43 (48)
T ss_dssp ETTTTEEEEEECTTEESTTSCEE
T ss_pred eCCCCCeEEeCCCCcccCCCCcC
Confidence 3334468999999 89999885
No 7
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.40 E-value=3.9 Score=23.67 Aligned_cols=16 Identities=31% Similarity=0.920 Sum_probs=14.1
Q ss_pred CCcccCCC--CCCCceeh
Q 032553 65 NPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 65 ~psCtCpd--~g~~CKHI 80 (138)
.++|.|+. .|+.|-|+
T Consensus 28 ~~~C~C~~gy~G~RCe~~ 45 (49)
T d1moxc_ 28 KPACVCHSGYVGARCEHA 45 (49)
T ss_dssp EEEEEECTTEESTTSCEE
T ss_pred CcEeECCCCCEecCCccc
Confidence 58999999 89999886
No 8
>d1r1fa_ g.3.3.4 (A:) Palicourein {Palicourea condensata [TaxId: 272141]}
Probab=24.99 E-value=12 Score=20.26 Aligned_cols=15 Identities=40% Similarity=0.802 Sum_probs=11.1
Q ss_pred CCcccCCC-CCCCcee
Q 032553 65 NPSCTCPD-RVTPCKH 79 (138)
Q Consensus 65 ~psCtCpd-~g~~CKH 79 (138)
.--|+|-| ...+||.
T Consensus 18 algctcddrsdglckr 33 (37)
T d1r1fa_ 18 ALGCTCDDRSDGLCKR 33 (37)
T ss_dssp GGTCCBCCSSSCCBCC
T ss_pred hcCccccCCccchhhc
Confidence 45699999 5678874
No 9
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.79 E-value=8.2 Score=21.03 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=15.9
Q ss_pred EEcCCCCcccCCC--CCCCceeh
Q 032553 60 VNLSSNPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 60 V~Ig~~psCtCpd--~g~~CKHI 80 (138)
+......+|.|+. .|..|-|+
T Consensus 16 ~~~~~~y~C~C~~g~~G~~Ce~~ 38 (40)
T d1g1sa2 16 LETIGNYTCSCYPGFYGPECEYV 38 (40)
T ss_dssp EECSSSEEEEECTTEESTTSCEE
T ss_pred ECCCCCeEEeCCCCccCCCCCCC
Confidence 3444568899999 78899875
No 10
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.40 E-value=8 Score=21.57 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=16.0
Q ss_pred EEEcCCCCcccCCC--CCCCceeh
Q 032553 59 TVNLSSNPSCTCPD--RVTPCKHI 80 (138)
Q Consensus 59 ~V~Ig~~psCtCpd--~g~~CKHI 80 (138)
-+.++ .++|.|+. .|+.|-|+
T Consensus 18 i~~l~-~~~C~C~~gY~G~RCq~~ 40 (41)
T d1xdtr_ 18 VKELR-APSCICHPGYHGERCHGL 40 (41)
T ss_dssp BGGGT-BCCEEECTTEESTTCCEE
T ss_pred cCcCC-CceeECCCCCeecCcccC
Confidence 33443 59999999 78999885
No 11
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.28 E-value=17 Score=24.53 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.0
Q ss_pred CCCchhhhhccCCHHHHHHhhcCCC
Q 032553 91 SPDDKCLRRRTLRPCQLSRLLSTPT 115 (138)
Q Consensus 91 p~~~~l~~Q~aL~~~El~~il~~p~ 115 (138)
..++-.+|.++|.+.||.++++...
T Consensus 153 ~i~~~~i~~~aLs~~EI~~ly~~~~ 177 (204)
T d1saca_ 153 EIGDLYMWDSVLPPENILSAYQGTP 177 (204)
T ss_dssp EEEEEEEESSCCCHHHHHHHHTTCC
T ss_pred EecceEEEcccCCHHHHHHHHcCCC
Confidence 3445678999999999999997543
No 12
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]}
Probab=22.49 E-value=64 Score=22.17 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=31.1
Q ss_pred cCCCCCCcccccCCCCCCChhHHHHHHHHhhcceEEEee
Q 032553 5 ASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHR 43 (138)
Q Consensus 5 ~~~~~~~~~r~r~~R~~~~~~v~~r~~RAl~~rm~ll~r 43 (138)
..|..++..++|+.|..-.+.+.+.++++...++-++..
T Consensus 5 ~~~~~~~~~~Rr~~~~~~de~i~~~L~~~~~~~la~~~~ 43 (194)
T d2vpaa1 5 DPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQ 43 (194)
T ss_dssp SCCCCCTTSCCCSTTBCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred CCCCCCCccccccccccCHHHHHHHHhhCCEEEEEEecC
Confidence 445666777888888877888999999999888888764
No 13
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}
Probab=20.58 E-value=10 Score=24.92 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=17.2
Q ss_pred CchhhhhccCCHHHHHHhhc
Q 032553 93 DDKCLRRRTLRPCQLSRLLS 112 (138)
Q Consensus 93 ~~~l~~Q~aL~~~El~~il~ 112 (138)
++-.+|.++|.+.||.+|++
T Consensus 195 d~v~iynraLs~~EI~~lY~ 214 (218)
T d1epwa1 195 KYFSIFNTELSQSNIEERYK 214 (218)
T ss_dssp EEEEEESSCCCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHh
Confidence 45678999999999999985
No 14
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.31 E-value=18 Score=24.22 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=20.2
Q ss_pred cCCCCchhhhhccCCHHHHHHhhcC
Q 032553 89 GVSPDDKCLRRRTLRPCQLSRLLST 113 (138)
Q Consensus 89 ~~p~~~~l~~Q~aL~~~El~~il~~ 113 (138)
.-.-++..+|-++|...||.+|+..
T Consensus 153 ~G~i~~~~i~~raLs~~EI~~l~~~ 177 (206)
T d1b09a_ 153 VGDIGNVNMWDFVLSPDEINTIYLG 177 (206)
T ss_dssp CEEEEEEEEESSCCCHHHHHHHHHT
T ss_pred eeEEeeEEEEcccCCHHHHHHHHhC
Confidence 3345567899999999999999954
Done!