BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032554
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW78|CLP41_ARATH Clp protease-related protein At4g12060, chloroplastic
OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1
Length = 241
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/138 (68%), Positives = 116/138 (84%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
MGELEARKLK+P TGTEA+LMGIL+EGTS +KFL AN + L+KVR+E+VK++GK D +F
Sbjct: 104 MGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYF 163
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSD 120
FSPEHPPLTEDAQR +D A+D LK+G GEV + +LLGIWSE +SPGHKILA LGF+D
Sbjct: 164 FSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTD 223
Query: 121 EKAKELESLSSEPGSVDD 138
EK+KELES +SE G +D+
Sbjct: 224 EKSKELESFASESGFLDE 241
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+GIL EGT LAAK L + G+TL R E KI+G+G F
Sbjct: 46 LAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFV 105
Query: 61 FSPEHPPLTEDAQRVIDWAVDH-KLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 117
P T A+++++ A++ ++ + N V LLLG+ E + ++L LG
Sbjct: 106 AI--EIPFTPRAKKILELAIEESRILTHNY--VGTEHLLLGLIKEGEGVAARVLENLG 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGK 55
E+R L H GTE +L+G++ EG +AA+ L GV L K+R ++++G+
Sbjct: 125 ESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRMIGE 175
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + GV L R E KI+G+G F
Sbjct: 15 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFV 74
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSD 120
P T A+RV++ +++ + G++ + LLLG+ E + ++L L
Sbjct: 75 AV--EIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLLGLIREGEGVAARVLENLALDL 131
Query: 121 EKAK 124
K +
Sbjct: 132 TKVR 135
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EAR+L H GTE +L+G++ EG +AA+ L + L KVR + ++++G
Sbjct: 94 EARQLGHNYIGTEHLLLGLIREGEGVAARVLENLALDLTKVRTQVIRLLG 143
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EA +L H GTE IL+G++ EG +AAK L A G+ K++ E ++G+G
Sbjct: 16 LAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS 75
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSD 120
+ + P A++VI+ ++D K G+S V +LLG+ E + ++L LG S
Sbjct: 76 QTIHYTP---RAKKVIELSMDEARKLGHS-YVGTEHILLGLIREGEGVAARVLNNLGVSL 131
Query: 121 EKAKE--LESL-SSEPGS 135
KA++ L+ L S+E GS
Sbjct: 132 NKARQQVLQLLGSNETGS 149
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EA +L H GTE IL+G++ EG +AAK L + G+ + K+++E K++G G
Sbjct: 16 LSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQEEVEKLIGVGKQPT 75
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSD 120
S + P A++V++ + D K G+S V +LLG+ E + ++L LG S
Sbjct: 76 QSIHYTP---RAKKVVELSQDEARKLGHS-YVGTEHILLGLIREGEGVAARVLNNLGVSL 131
Query: 121 EKAKE 125
KA++
Sbjct: 132 NKARQ 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGD 57
EARKL H GTE IL+G++ EG +AA+ L GV+L K R + ++++G +
Sbjct: 94 EARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AA+ L + V L R E KI+G+G F
Sbjct: 15 LAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFV 74
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 117
P T A+RV++ +++ + G++ + LL+G+ E + ++L L
Sbjct: 75 AV--EIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLMGLVREGEGVAARVLENLA 128
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG 56
EAR+L H GTE +LMG++ EG +AA+ L V + +R E ++++G+
Sbjct: 94 EARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGEN 145
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AA+ L + V L R E KI+G+G F
Sbjct: 15 LAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFV 74
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 117
P T A+RV++ +++ + G++ + LL+G+ E + ++L L
Sbjct: 75 AV--EIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLMGLVREGEGVAARVLENLA 128
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG 56
EAR+L H GTE +LMG++ EG +AA+ L V + +R E ++++G+
Sbjct: 94 EARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGEN 145
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR L H GTE IL+G++ EG +AAK L + G++L VR + +I+G+G
Sbjct: 15 LAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQ--- 71
Query: 61 FSPE-HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 117
+P H P T A++V++ ++ L+ G++ + +LLG+ E + ++L LG
Sbjct: 72 QAPSGHIPFTPRAKKVLELSLREALQLGHN-YIGTEHILLGLIREGEGVAAQVLVKLG 128
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIV 53
EA +L H GTE IL+G++ EG +AA+ L G L +VR + ++++
Sbjct: 94 EALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLL 142
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR L H GTE IL+G++ EG +AAK L + G++L VR + +I+G+G
Sbjct: 15 LAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQ--- 71
Query: 61 FSPE-HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 117
+P H P T A++V++ ++ L+ G++ + +LLG+ E + ++L LG
Sbjct: 72 QAPSGHIPFTPRAKKVLELSLREALQLGHN-YIGTEHILLGLIREGEGVAAQVLVKLG 128
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIV 53
EA +L H GTE IL+G++ EG +AA+ L G L +VR + ++++
Sbjct: 94 EALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLL 142
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR L H GTE IL+G++ EG +AAK L + G++L VR + I+G+G
Sbjct: 15 LAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVRSQVEDIIGQGQ--- 71
Query: 61 FSPE-HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 117
+P H P T A++V++ ++ L+ G++ + +LLG+ E + ++L LG
Sbjct: 72 QAPSGHIPFTPRAKKVLELSLREALQLGHN-YIGTEHILLGLIREGEGVAAQVLVKLG 128
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIV 53
EA +L H GTE IL+G++ EG +AA+ L G L +VR + ++++
Sbjct: 94 EALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLL 142
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G+ F
Sbjct: 102 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGNGFV 161
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 162 AV--EIPFTPRAKRVLELSLEEARQLGHN 188
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 107 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFI 166
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 167 AV--EIPFTPRAKRVLELSLEEARQLGHN 193
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR++ H GTE +L+GI+ + + A+ L VTL K R E +G+G F
Sbjct: 15 LSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKARREIELYIGRGTGFV 74
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSD 120
S P T A+RV++ AV H+ K V +LL + SE+D + L LG +
Sbjct: 75 AS--EIPFTPRAKRVLEMAV-HEGKDLGQNFVGTEHILLALISESDGVAMRTLDKLGVNI 131
Query: 121 EKAKEL 126
K + L
Sbjct: 132 PKLRNL 137
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 55 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV 114
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 115 AV--EIPFTPRAKRVLELSLEEARQLGHN 141
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 105 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV 164
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 165 AV--EIPFTPRAKRVLELSLEEARQLGHN 191
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 101 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV 160
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 161 AV--EIPFTPRAKRVLELSLEEARQLGHN 187
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 132 EARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEVEKIIGRGSGFVAV-- 189
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 190 EIPFTPRAKRVLELSLEEARQLGHN 214
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 105 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV 164
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ + + + G++
Sbjct: 165 AV--EIPFTPRAKRVLELSQEEARQLGHN 191
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EAR+L H GTE IL+G++ EGT +AAK L + G+ L R E KI+G+G F
Sbjct: 108 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV 167
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNS 89
P T A+RV++ +++ + G++
Sbjct: 168 --AVEIPFTPRAKRVLELSLEEARQLGHN 194
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
M + EAR+L H G+E +L+G++ EGT + AK L G++L R E K+ G+G
Sbjct: 112 MAQEEARRLGHHAAGSEQLLLGVIGEGTGIGAKVLRGAGLSLKAARAEVEKMAGRGPGMV 171
Query: 61 FSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104
P T A+ V+ + + + G++ V + LLLG+ E
Sbjct: 172 --PMEIKFTPAAKNVLQASQEEAHQLGHN-YVGSEHLLLGLLRE 212
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L + +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDQTGTLH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTPR---AKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKA-KEL 126
LTE AQRV+ A + ++ +S + LLLG+ E + K+L + +++K +E+
Sbjct: 6 LTERAQRVLAHAQEEAIRLNHSN-IGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 127 ESL 129
E L
Sbjct: 65 EKL 67
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA +L H GTE +L+G++ E +AAK L +T KV +E K++G G +
Sbjct: 20 EAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLETFEITEEKVVEEVEKLIGHGQEQMGALH 79
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 124
+ P A++VI+ ++D K ++ V +LLG+ E + ++ A L + KA+
Sbjct: 80 YTP---RAKKVIELSMDEARKLHHNF-VGTEHILLGLIRENEGVAARVFANLDLNITKAR 135
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54
EARKL H GTE IL+G++ E +AA+ + + K R + VK +G
Sbjct: 94 EARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALG 143
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EAR L H GTE +L+G+L E + A L + G+ L +R E +K++G S E
Sbjct: 97 EARALSHNYIGTEHLLLGLLREESGTAYNVLTSMGLELTILRQEILKMLGVAGSNISSME 156
Query: 65 HPPLTEDAQRVIDWAVDH 82
++ ++V +D
Sbjct: 157 QTSQEDNVKKVKTPTLDQ 174
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTL--FKVRDESVKIVGKGDFFFFS 62
EA++L H E IL+G+L E +LA + L + L K+ ES + F +
Sbjct: 21 EAKRLNHDMVTPEHILLGLLYESEALATRVLMRLKIDLDRLKLELESAMVKSSTTKVFGT 80
Query: 63 -PEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGF 118
P P + Q++I + + ++ + + LLLG+ E + +L ++G
Sbjct: 81 LPTAPRV----QKLISRSAEEA-RALSHNYIGTEHLLLGLLREESGTAYNVLTSMGL 132
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EA++L H GTE IL+G+L G +A L G+ R E +++G G
Sbjct: 15 LAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTARQEVERLIGYG---- 70
Query: 61 FSPE-----HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAA 115
PE P LT ++ + A + + V LLLGI ++DS ++L
Sbjct: 71 --PEIQVYGDPALTGRVKKSFESA-NEEASLLEHNYVGTEHLLLGILHQSDSVALQVLEN 127
Query: 116 LGFS-----DEKAKELESLS 130
L E KELE+ +
Sbjct: 128 LHIDPREVRKEILKELETFN 147
>sp|B9E706|SYD_MACCJ Aspartate--tRNA ligase OS=Macrococcus caseolyticus (strain
JCSC5402) GN=aspS PE=3 SV=1
Length = 592
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 34 FLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVT 93
FLW LF+ +E + +F+ HP + V D + N+ +V
Sbjct: 428 FLWVTDWPLFEYDEELDR--------YFAAHHPFTAPKKEHVEMLKTDKEKVQANAYDVV 479
Query: 94 ASDLLLG---IWSETDSPGHKILAALGFSDEKAKE 125
+ LG I K+ ALGFSDE+A+E
Sbjct: 480 LNGYELGGGSIRIHDQEMQKKMFEALGFSDEEAQE 514
>sp|B9LU22|DNLJ_HALLT DNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM
5036 / JCM 8891 / ACAM 34) GN=ligA PE=3 SV=1
Length = 710
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELE 127
L E + D AVD GE +A +L+ + + D P LA LG D A
Sbjct: 501 LVESLPDLYDLAVDDLAALEGWGETSAENLIAELAATRDPPLDDFLAGLGIPDVGATTAR 560
Query: 128 SLSSEPGSVD 137
+L++ G +D
Sbjct: 561 ALAAHFGDLD 570
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 5 EARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPE 64
EA++L H GTE IL+G+L G +A L GV + E +++G G +
Sbjct: 19 EAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKHEVERLIGYGPEIQVCGD 78
Query: 65 HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG-----FS 119
P LT ++ + A + + V LLLGI +++D ++L L
Sbjct: 79 -PALTGRVKKSFESA-NEEAALLEHNYVGTEHLLLGILNQSDGVALQVLENLHVDPKEIR 136
Query: 120 DEKAKELESLS 130
E KELE+ +
Sbjct: 137 KEILKELETFN 147
>sp|B1ICC9|VATA_STRPI V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=atpA PE=3 SV=1
Length = 591
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 51 KIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGH 110
K+ DF E P L D I W D + G +V+ D+L G ET+ H
Sbjct: 95 KLATHNDFLVRGVEVPSLDRD----IKWHFDSTISIGQ--KVSTGDIL-GTVKETEVVNH 147
Query: 111 KILAALGFSDE 121
KI+ G S E
Sbjct: 148 KIMVPYGISGE 158
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 1 MGELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF 60
+ + EA++L H GTE IL+G+L G +A L GV ++E +++G G
Sbjct: 31 LAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKNEVERLIGYG---- 86
Query: 61 FSPE-----HPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAA 115
PE P LT ++ + A + + V LLLGI ++ D ++L
Sbjct: 87 --PEIQVYGDPALTGRVKKSFESA-NEEASILEHNYVGTEHLLLGILNQADGVALQVLEN 143
Query: 116 LGFS-----DEKAKELESLS 130
L E KELE+ +
Sbjct: 144 LHIDPKEIRKEILKELETFN 163
>sp|B3R647|COBT_CUPTR Nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=cobT PE=3 SV=1
Length = 346
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 63 PEHPPLTEDAQRVIDWAVDHKLKS-GNSGEVTASDLLLGIWSETDSPGHKILAALGFSDE 121
PE PPL + + V+ A+D K K G G + A L LG+ T P + + F+ +
Sbjct: 4 PEIPPLDDALRPVLQAAIDDKTKPLGALGRLEALALQLGLIQGTARPVLRRPTVIVFAAD 63
Query: 122 KAKELESLSSEPGSV 136
+S+ P V
Sbjct: 64 HGVADAGVSAYPAEV 78
>sp|Q8Y709|SYD_LISMO Aspartate--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=aspS PE=3 SV=1
Length = 591
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 34 FLWANGVTLFKVRDESVKIVGKGDFFFFSPEH--PPLTEDAQRVIDWAVDHKLKSGNSGE 91
FLW LF+ +E+ + V F E P L D+ +V+ A D L N E
Sbjct: 428 FLWVTDWPLFEYDEEAERYVSAHHPFTLPKEEDIPLLETDSSKVMAEAYDIVL---NGYE 484
Query: 92 VTASDLLLGIWSETDSPGHKILAALGFSDEKAKE 125
+ L + +S + ALGF+DE AKE
Sbjct: 485 IGGGSLRIYKKEVQES----MFRALGFTDESAKE 514
>sp|C1CES2|VATA_STRZJ V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain
JJA) GN=atpA PE=3 SV=1
Length = 591
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 51 KIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGH 110
K+ DF E P L D I W D + G +V+ D+L G ET+ H
Sbjct: 95 KLATHNDFLVRGVEVPSLDRD----IKWHFDSTIAIGQ--KVSTGDIL-GTVKETEVVNH 147
Query: 111 KILAALGFSDE 121
KI+ G S E
Sbjct: 148 KIMVPYGVSGE 158
>sp|Q97QA8|VATA_STRPN V-type ATP synthase alpha chain OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=atpA PE=3
SV=1
Length = 591
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 51 KIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGH 110
K+ DF E P L D I W D + G +V+ D+L G ET+ H
Sbjct: 95 KLATHNDFLVRGVEVPSLDRD----IKWHFDSTIAIGQ--KVSTGDIL-GTVKETEVVNH 147
Query: 111 KILAALGFSDE 121
KI+ G S E
Sbjct: 148 KIMVPYGVSGE 158
>sp|B8ZK31|VATA_STRPJ V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=atpA PE=3 SV=1
Length = 591
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 51 KIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGH 110
K+ DF E P L D I W D + G +V+ D+L G ET+ H
Sbjct: 95 KLATHNDFLVRGVEVPSLDRD----IKWHFDSTIAIGQ--KVSTGDIL-GTVKETEVVNH 147
Query: 111 KILAALGFSDE 121
KI+ G S E
Sbjct: 148 KIMVPYGVSGE 158
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 102 WSETDSPG-----HKILAALGFSDEKAKELESLSSEPGSVDD 138
W++ D P HK+ + G+SDEK E ES S S+ D
Sbjct: 412 WADHDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISD 453
>sp|Q39QN3|UVRC_GEOMG UvrABC system protein C OS=Geobacter metallireducens (strain GS-15
/ ATCC 53774 / DSM 7210) GN=uvrC PE=3 SV=1
Length = 614
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 3 ELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVR 46
E+ K K TTG +A ++GI EG+SL+ L+ G L R
Sbjct: 234 EVTVEKQKMVTTGGDADVLGIHREGSSLSLALLFIRGGRLIGSR 277
>sp|C1KVG6|SYD_LISMC Aspartate--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=aspS PE=3 SV=1
Length = 591
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 34 FLWANGVTLFKVRDESVKIVGKGDFFFFSPEH--PPLTEDAQRVIDWAVDHKLKSGNSGE 91
FLW LF+ +E+ + V F E P L D+ +V+ A D L N E
Sbjct: 428 FLWVTDWPLFEYDEEAGRYVSAHHPFTLPKEEDIPLLETDSSKVMAEAYDIVL---NGYE 484
Query: 92 VTASDLLLGIWSETDSPGHKILAALGFSDEKAKE 125
+ L + +S + ALGF+DE AKE
Sbjct: 485 IGGGSLRIYKKEVQES----MFRALGFTDESAKE 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,833,198
Number of Sequences: 539616
Number of extensions: 2163031
Number of successful extensions: 3929
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3836
Number of HSP's gapped (non-prelim): 100
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)