Query 032554
Match_columns 138
No_of_seqs 169 out of 1414
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 04:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fh2_A Probable ATP-dependent 100.0 4.4E-31 1.5E-35 178.6 16.6 129 2-133 18-146 (146)
2 1khy_A CLPB protein; alpha hel 100.0 1.1E-30 3.7E-35 176.6 15.5 132 2-135 17-148 (148)
3 3fes_A ATP-dependent CLP endop 100.0 1.3E-30 4.4E-35 176.2 13.8 127 2-132 19-145 (145)
4 2y1q_A CLPC N-domain, negative 100.0 2.9E-30 9.8E-35 175.0 14.4 131 2-136 17-147 (150)
5 1k6k_A ATP-dependent CLP prote 100.0 1.3E-27 4.3E-32 160.7 12.8 124 2-128 13-139 (143)
6 3pxg_A Negative regulator of g 99.9 7E-26 2.4E-30 178.0 15.4 130 2-135 17-146 (468)
7 3zri_A CLPB protein, CLPV; cha 99.9 1.4E-25 4.8E-30 155.2 13.4 130 2-135 36-168 (171)
8 3pxi_A Negative regulator of g 99.9 9E-25 3.1E-29 179.9 15.6 131 2-136 17-147 (758)
9 1r6b_X CLPA protein; AAA+, N-t 99.9 8E-22 2.7E-26 162.2 13.8 126 2-130 13-141 (758)
10 1qvr_A CLPB protein; coiled co 99.9 3.3E-21 1.1E-25 160.5 12.6 125 2-136 17-141 (854)
11 3fh2_A Probable ATP-dependent 99.4 3.8E-12 1.3E-16 85.4 8.7 66 67-133 6-71 (146)
12 3fes_A ATP-dependent CLP endop 99.3 7E-12 2.4E-16 84.0 7.8 65 67-132 7-71 (145)
13 1khy_A CLPB protein; alpha hel 99.3 2.9E-11 1E-15 80.8 8.7 64 67-131 5-68 (148)
14 2y1q_A CLPC N-domain, negative 99.2 2.6E-11 9E-16 81.3 7.9 65 67-132 5-69 (150)
15 3zri_A CLPB protein, CLPV; cha 99.2 4.3E-11 1.5E-15 82.4 8.6 61 67-128 24-84 (171)
16 1k6k_A ATP-dependent CLP prote 99.1 2.6E-10 9E-15 75.8 6.3 60 68-130 2-61 (143)
17 3pxg_A Negative regulator of g 98.9 3.9E-09 1.3E-13 82.8 8.8 65 67-132 5-69 (468)
18 3pxi_A Negative regulator of g 98.8 2E-08 6.8E-13 82.8 8.9 65 67-132 5-69 (758)
19 1qvr_A CLPB protein; coiled co 98.7 6.2E-08 2.1E-12 80.9 8.0 63 67-130 5-67 (854)
20 1r6b_X CLPA protein; AAA+, N-t 98.5 1.8E-07 6.2E-12 77.0 6.5 60 68-130 2-61 (758)
21 1f1e_A Histone fold protein; a 94.6 0.38 1.3E-05 32.1 8.8 95 2-103 46-146 (154)
22 2f8n_G Core histone macro-H2A. 86.1 1 3.5E-05 28.7 4.0 70 40-114 23-96 (120)
23 2nqb_C Histone H2A; nucleosome 86.1 1 3.4E-05 28.8 4.0 40 72-114 58-97 (123)
24 1id3_C Histone H2A.1; nucleoso 85.8 1 3.5E-05 29.1 4.0 39 73-114 61-99 (131)
25 1tzy_A Histone H2A-IV; histone 85.6 1.1 3.7E-05 28.9 4.0 39 73-114 61-99 (129)
26 1f66_C Histone H2A.Z; nucleoso 85.4 0.96 3.3E-05 29.1 3.7 32 73-105 64-95 (128)
27 1tzy_D Histone H4-VI; histone- 82.4 1.6 5.6E-05 26.8 3.7 36 68-104 59-94 (103)
28 2yfw_B Histone H4, H4; cell cy 82.3 1.7 5.8E-05 26.8 3.7 36 68-104 59-94 (103)
29 2f8n_K Histone H2A type 1; nuc 82.2 1.7 5.7E-05 28.8 3.8 39 73-114 80-118 (149)
30 1ku5_A HPHA, archaeal histon; 79.8 2.4 8.2E-05 24.0 3.6 31 70-101 38-68 (70)
31 2jss_A Chimera of histone H2B. 77.8 3.5 0.00012 28.3 4.5 108 2-113 45-179 (192)
32 1b67_A Protein (histone HMFA); 73.8 4.7 0.00016 22.5 3.7 28 74-102 38-65 (68)
33 1taf_A TFIID TBP associated fa 69.7 10 0.00035 21.4 4.4 32 70-102 33-64 (68)
34 1id3_B Histone H4; nucleosome 68.8 6.5 0.00022 24.1 3.7 36 68-104 58-93 (102)
35 1n1j_B NF-YC; histone-like PAI 68.8 6.9 0.00024 23.6 3.8 31 74-105 56-86 (97)
36 1jfi_A Transcription regulator 68.2 3.7 0.00013 24.9 2.5 31 74-105 48-78 (98)
37 2hue_C Histone H4; mini beta s 67.8 6.6 0.00023 23.0 3.5 36 68-104 40-75 (84)
38 3b0c_T CENP-T, centromere prot 67.5 12 0.0004 23.3 4.8 36 70-106 39-74 (111)
39 4g92_C HAPE; transcription fac 67.5 7.2 0.00025 24.5 3.8 31 74-105 78-108 (119)
40 2f8n_G Core histone macro-H2A. 65.4 2.2 7.5E-05 27.1 1.1 26 2-27 64-89 (120)
41 3kw6_A 26S protease regulatory 64.6 11 0.00039 21.2 4.1 34 69-103 39-72 (78)
42 1f66_C Histone H2A.Z; nucleoso 63.7 2.4 8.1E-05 27.3 1.0 26 2-27 70-95 (128)
43 2nqb_C Histone H2A; nucleosome 63.0 3.1 0.0001 26.5 1.4 26 2-27 65-90 (123)
44 1taf_B TFIID TBP associated fa 62.9 18 0.00063 20.5 4.6 32 69-101 37-68 (70)
45 1id3_C Histone H2A.1; nucleoso 61.9 3.3 0.00011 26.7 1.4 33 2-36 67-99 (131)
46 1tzy_A Histone H2A-IV; histone 61.8 3.3 0.00011 26.6 1.4 32 2-35 67-98 (129)
47 3b0c_W CENP-W, centromere prot 59.3 18 0.0006 20.7 4.2 26 75-101 42-67 (76)
48 1n1j_A NF-YB; histone-like PAI 56.9 21 0.00072 21.1 4.4 36 66-102 26-73 (93)
49 2jss_A Chimera of histone H2B. 55.2 7.4 0.00025 26.6 2.4 32 2-35 148-179 (192)
50 2f8n_K Histone H2A type 1; nuc 54.8 5.1 0.00017 26.4 1.4 32 2-35 86-117 (149)
51 2ly8_A Budding yeast chaperone 53.0 26 0.00088 22.2 4.5 36 69-105 78-113 (121)
52 2xvc_A ESCRT-III, SSO0910; cel 52.8 27 0.00091 19.1 4.7 45 11-55 6-52 (59)
53 2dzn_B 26S protease regulatory 52.2 24 0.00083 20.0 4.1 35 69-104 34-68 (82)
54 3vlf_B 26S protease regulatory 51.1 32 0.0011 19.9 4.5 35 69-104 37-71 (88)
55 3b0b_C CENP-X, centromere prot 50.4 17 0.00057 21.3 3.1 24 74-98 47-70 (81)
56 4dra_E Centromere protein X; D 48.9 26 0.0009 20.6 3.8 25 74-99 51-75 (84)
57 2lnb_A Z-DNA-binding protein 1 48.2 15 0.00053 21.4 2.6 42 95-136 22-64 (80)
58 2k53_A A3DK08 protein; NESG, C 47.4 19 0.00065 20.6 3.0 25 30-54 40-64 (76)
59 2k5e_A Uncharacterized protein 47.0 29 0.00099 19.6 3.7 24 31-54 43-66 (73)
60 3g3z_A NMB1585, transcriptiona 46.0 50 0.0017 20.3 7.0 68 18-85 35-108 (145)
61 2krk_A 26S protease regulatory 44.7 37 0.0013 19.6 4.1 34 69-103 47-80 (86)
62 1q02_A Sequestosome 1; helical 44.4 36 0.0012 18.1 3.9 27 103-129 23-49 (52)
63 3tl8_B Effector protein hopab2 43.5 34 0.0012 21.1 3.7 26 30-55 42-67 (117)
64 2lf6_A Effector protein hopab1 42.9 27 0.00092 21.0 3.2 26 30-55 25-50 (101)
65 4hbl_A Transcriptional regulat 42.8 58 0.002 20.2 6.2 79 17-96 44-128 (149)
66 2lf3_A Effector protein hopab3 42.8 27 0.00092 21.2 3.2 26 30-55 36-61 (107)
67 3aji_B S6C, proteasome (prosom 41.2 28 0.00097 19.7 3.2 36 69-105 37-72 (83)
68 2byk_A Chrac-16; nucleosome sl 40.7 32 0.0011 22.2 3.6 30 75-105 57-87 (140)
69 1qbj_A Protein (double-strande 39.9 26 0.00088 20.3 2.8 26 107-132 28-53 (81)
70 1fnn_A CDC6P, cell division co 38.3 68 0.0023 23.1 5.6 58 70-128 241-298 (389)
71 1jfi_B DR1 protein, transcript 38.0 44 0.0015 22.6 4.0 28 2-29 57-84 (179)
72 3e7l_A Transcriptional regulat 35.8 51 0.0017 17.6 3.5 35 17-52 22-56 (63)
73 3ksy_A SOS-1, SON of sevenless 35.0 49 0.0017 28.4 4.8 32 73-105 139-170 (1049)
74 1yg2_A Gene activator APHA; vi 34.7 38 0.0013 22.3 3.4 38 93-130 2-47 (179)
75 3v9r_A MHF1, uncharacterized p 34.6 60 0.0021 19.3 3.9 29 75-104 52-80 (90)
76 2byk_B Chrac-14; nucleosome sl 34.2 74 0.0025 20.1 4.5 39 66-105 27-77 (128)
77 1oyi_A Double-stranded RNA-bin 34.2 65 0.0022 18.7 3.9 36 20-55 22-57 (82)
78 3b0b_B CENP-S, centromere prot 33.7 51 0.0017 20.3 3.5 33 72-105 56-88 (107)
79 1sfx_A Conserved hypothetical 33.3 69 0.0024 18.2 4.2 39 18-56 24-62 (109)
80 1whz_A Hypothetical protein; a 31.8 42 0.0014 18.4 2.8 19 28-46 50-68 (70)
81 4esf_A PADR-like transcription 31.5 81 0.0028 19.2 4.3 64 16-79 12-89 (117)
82 1xn7_A Hypothetical protein YH 31.3 76 0.0026 18.1 5.0 38 18-55 6-43 (78)
83 2htj_A P fimbrial regulatory p 31.2 67 0.0023 17.8 3.7 37 19-55 5-41 (81)
84 1sfu_A 34L protein; protein/Z- 30.5 45 0.0016 19.1 2.7 45 91-135 10-58 (75)
85 1xmk_A Double-stranded RNA-spe 30.3 74 0.0025 18.2 3.7 39 17-55 14-53 (79)
86 1ub9_A Hypothetical protein PH 29.3 81 0.0028 17.8 4.1 64 18-81 20-89 (100)
87 1ixz_A ATP-dependent metallopr 29.2 1E+02 0.0036 20.9 5.1 32 68-100 220-252 (254)
88 1iy2_A ATP-dependent metallopr 29.0 1.1E+02 0.0036 21.3 5.1 34 67-101 243-277 (278)
89 3fm5_A Transcriptional regulat 28.8 1E+02 0.0036 18.9 6.0 67 18-84 43-116 (150)
90 3r0a_A Putative transcriptiona 28.7 93 0.0032 18.9 4.3 40 17-56 29-70 (123)
91 2k02_A Ferrous iron transport 28.7 92 0.0031 18.2 5.4 38 19-56 7-44 (87)
92 2l5a_A Histone H3-like centrom 28.6 94 0.0032 21.9 4.6 32 71-103 194-225 (235)
93 3ech_A MEXR, multidrug resista 28.4 1E+02 0.0035 18.7 5.7 67 18-84 41-113 (142)
94 1ntc_A Protein (nitrogen regul 28.2 68 0.0023 18.5 3.4 23 29-51 65-87 (91)
95 4aik_A Transcriptional regulat 28.2 91 0.0031 19.6 4.3 72 13-84 28-108 (151)
96 3hhh_A Transcriptional regulat 27.6 81 0.0028 19.2 3.8 38 94-131 14-57 (116)
97 2qvo_A Uncharacterized protein 27.6 90 0.0031 17.8 3.9 70 17-86 15-91 (95)
98 1bh9_B TAFII28; histone fold, 27.5 99 0.0034 18.2 4.7 68 32-102 9-80 (89)
99 1yg2_A Gene activator APHA; vi 27.2 1E+02 0.0036 20.1 4.6 84 15-102 2-101 (179)
100 1f1e_A Histone fold protein; a 27.2 71 0.0024 21.0 3.6 29 72-101 39-67 (154)
101 2w84_A Peroxisomal membrane pr 26.7 92 0.0032 17.6 3.7 23 110-132 39-61 (70)
102 3kv0_A HET-C2; GLTP, glycolipi 26.4 1.4E+02 0.0048 20.5 5.2 57 70-129 130-186 (209)
103 3oop_A LIN2960 protein; protei 26.4 1.1E+02 0.0038 18.5 5.9 75 10-84 31-113 (143)
104 4dra_A Centromere protein S; D 26.1 97 0.0033 19.2 3.9 39 73-114 65-103 (113)
105 1lv7_A FTSH; alpha/beta domain 26.1 1.1E+02 0.0039 20.7 4.8 30 71-101 220-249 (257)
106 1jgs_A Multiple antibiotic res 25.7 1.1E+02 0.0039 18.2 5.2 41 91-131 31-73 (138)
107 3hsr_A HTH-type transcriptiona 25.4 1.1E+02 0.0039 18.5 4.3 40 92-131 34-75 (140)
108 2zkz_A Transcriptional repress 25.3 84 0.0029 18.2 3.5 37 96-132 31-67 (99)
109 3f8b_A Transcriptional regulat 25.1 1.2E+02 0.0041 18.3 4.5 65 16-80 13-93 (116)
110 3nrv_A Putative transcriptiona 24.9 1.2E+02 0.0042 18.4 6.4 65 18-82 44-114 (148)
111 1lj9_A Transcriptional regulat 24.8 1.2E+02 0.0041 18.3 6.1 40 92-131 29-68 (144)
112 3h4m_A Proteasome-activating n 24.8 1.2E+02 0.0041 20.8 4.8 34 68-102 222-256 (285)
113 3bpv_A Transcriptional regulat 24.7 1.2E+02 0.004 18.1 4.5 64 19-82 34-103 (138)
114 2d1h_A ST1889, 109AA long hypo 24.6 1E+02 0.0036 17.5 4.4 38 18-55 25-63 (109)
115 3vh5_A CENP-S; histone fold, c 24.3 1.2E+02 0.004 19.7 4.1 40 73-115 57-96 (140)
116 1jfi_B DR1 protein, transcript 24.3 1.2E+02 0.0043 20.3 4.4 57 37-104 13-81 (179)
117 2qww_A Transcriptional regulat 24.1 1.2E+02 0.0042 18.5 4.4 64 18-81 45-116 (154)
118 3bj6_A Transcriptional regulat 23.9 1.3E+02 0.0044 18.3 5.4 39 93-131 41-79 (152)
119 1umq_A Photosynthetic apparatu 23.8 65 0.0022 18.6 2.6 28 24-51 50-77 (81)
120 2nnn_A Probable transcriptiona 23.8 1.2E+02 0.0042 18.0 4.7 71 13-83 35-113 (140)
121 3hzs_A Monofunctional glycosyl 23.6 25 0.00085 24.4 0.9 36 16-54 30-65 (209)
122 2rdp_A Putative transcriptiona 23.5 1.3E+02 0.0045 18.2 5.0 42 90-131 38-81 (150)
123 2frh_A SARA, staphylococcal ac 23.4 1.3E+02 0.0044 18.1 6.0 71 13-83 34-114 (127)
124 3k0l_A Repressor protein; heli 23.3 1.4E+02 0.0049 18.6 5.4 67 18-84 50-122 (162)
125 1qgp_A Protein (double strande 23.2 94 0.0032 17.4 3.3 38 18-55 17-58 (77)
126 2fbi_A Probable transcriptiona 23.1 1.3E+02 0.0044 18.0 4.5 67 18-84 40-112 (142)
127 1z67_A Hypothetical protein S4 23.1 1.4E+02 0.0048 19.1 4.3 42 10-54 60-101 (135)
128 3e6m_A MARR family transcripti 23.0 1.4E+02 0.0049 18.5 6.2 67 18-84 57-129 (161)
129 3ff5_A PEX14P, peroxisomal bio 22.8 98 0.0033 16.5 3.0 19 111-129 35-53 (54)
130 3tgn_A ADC operon repressor AD 22.8 1.3E+02 0.0044 18.2 4.2 63 17-80 41-109 (146)
131 2a61_A Transcriptional regulat 22.3 1.3E+02 0.0045 18.1 4.2 67 18-84 37-109 (145)
132 2heo_A Z-DNA binding protein 1 22.3 82 0.0028 17.0 2.8 26 108-133 27-52 (67)
133 3bdd_A Regulatory protein MARR 22.2 1.3E+02 0.0044 18.0 4.1 59 18-76 35-99 (142)
134 1kq3_A Glycerol dehydrogenase; 22.2 1.3E+02 0.0045 22.2 4.7 18 70-87 356-373 (376)
135 3l9f_A Putative uncharacterize 22.2 39 0.0013 23.1 1.6 46 84-130 28-81 (204)
136 4esb_A Transcriptional regulat 21.7 83 0.0028 19.1 3.0 38 94-131 10-53 (115)
137 3bro_A Transcriptional regulat 21.2 1.4E+02 0.0049 17.8 5.9 37 95-131 37-75 (141)
138 2dam_A ETEA protein; KIAA0887, 21.2 1.2E+02 0.0039 16.7 3.6 31 22-55 27-58 (67)
139 3bja_A Transcriptional regulat 21.1 1.4E+02 0.0048 17.7 5.3 70 14-83 31-108 (139)
140 2v1u_A Cell division control p 20.7 1.8E+02 0.0063 20.6 5.2 33 70-103 243-275 (387)
141 3lmm_A Uncharacterized protein 20.5 70 0.0024 25.6 3.0 116 17-133 432-557 (583)
142 1g2h_A Transcriptional regulat 20.5 1.1E+02 0.0037 16.2 3.2 35 15-51 22-56 (61)
143 3s2w_A Transcriptional regulat 20.5 1.6E+02 0.0055 18.2 6.2 40 92-131 50-89 (159)
144 4hbl_A Transcriptional regulat 20.5 1.6E+02 0.0054 18.0 6.0 39 92-130 41-79 (149)
145 3f3x_A Transcriptional regulat 20.4 1.3E+02 0.0045 18.2 3.9 67 18-85 41-113 (144)
146 1q1h_A TFE, transcription fact 20.3 1.3E+02 0.0043 17.6 3.6 39 16-54 20-59 (110)
147 1eto_A FIS, factor for inversi 20.2 1.2E+02 0.0042 17.9 3.5 23 29-51 72-94 (98)
148 2ooa_A E3 ubiquitin-protein li 20.2 1.1E+02 0.0038 16.2 3.1 21 112-132 17-37 (52)
149 4b4t_L 26S protease subunit RP 20.0 1.6E+02 0.0053 22.7 4.8 32 70-102 389-420 (437)
No 1
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.98 E-value=4.4e-31 Score=178.64 Aligned_cols=129 Identities=31% Similarity=0.435 Sum_probs=121.6
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++|++++++.+.++|+++|+|++.+++.+++.+++.|... ++.|++|+.++++|+.|+.
T Consensus 18 A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~--~~~~~~s~~~~~vL~~A~~ 95 (146)
T 3fh2_A 18 AQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQPT--TGHIPFTPRAKKVLELSLR 95 (146)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCCC--CSCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCCC--cCCCcCCHHHHHHHHHHHH
Confidence 78999999999999999999999998899999999999999999999999999888642 4568999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEP 133 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~ 133 (138)
+|+++++ +||+++|||+||++++++.+.++|+.+|++++.+++.+.++++|
T Consensus 96 ~a~~~~~-~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g~ 146 (146)
T 3fh2_A 96 EGLQMGH-KYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSG 146 (146)
T ss_dssp HHHHTTC-SSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCC
T ss_pred HHHHcCC-CcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 9999999 99999999999999888899999999999999999999999875
No 2
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.97 E-value=1.1e-30 Score=176.60 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=114.0
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++|++++++.+..+|+++|+|++.++..++..+.+.|...+..+.|++|+.+.++|+.|+.
T Consensus 17 A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~~~~s~~~~~vl~~A~~ 96 (148)
T 1khy_A 17 AQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDK 96 (148)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC-------CBCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCcCcCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999988764322458899999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCCCC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEPGS 135 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~~~ 135 (138)
+|+.+++ +||+++|||+|+++ .++.+..+|+.+|++.+.+++.+.++||+++
T Consensus 97 ~a~~~~~-~~i~~ehlLlall~-~~~~~~~~L~~~gi~~~~l~~~l~~~rg~~~ 148 (148)
T 1khy_A 97 LAQKRGD-NFISSELFVLAALE-SRGTLADILKAAGATTANITQAIEQMRGGES 148 (148)
T ss_dssp HHHHHTC-SSBCHHHHHHHHHT-SCHHHHHHHHHTTCCHHHHHHHHHC------
T ss_pred HHHHcCC-CeecHHHHHHHHHc-CCcHHHHHHHHcCCCHHHHHHHHHHHHCCCC
Confidence 9999999 99999999999994 5678899999999999999999999998763
No 3
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.97 E-value=1.3e-30 Score=176.20 Aligned_cols=127 Identities=26% Similarity=0.314 Sum_probs=119.6
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++|++++++.+..+|+++|+|++.+++.+++.+++.|+ . ++.|++|+.++++|+.|+.
T Consensus 19 A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~--~~~~~~s~~~~~vl~~A~~ 95 (145)
T 3fes_A 19 AFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-I--SEDIVLSPRSKQILELSGM 95 (145)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-C--CSCCEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C--CCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999998886 3 3568999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
+|+.+++ +||+++|||+||++++++.+.++|+.+|++++.+++.+.++.|
T Consensus 96 ~A~~~~~-~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~ 145 (145)
T 3fes_A 96 FANKLKT-NYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMG 145 (145)
T ss_dssp HHHHTTC-SSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTCC
T ss_pred HHHHcCC-CcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 9999999 9999999999999988888999999999999999999988754
No 4
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.97 E-value=2.9e-30 Score=174.98 Aligned_cols=131 Identities=30% Similarity=0.399 Sum_probs=118.9
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++|++++++.+..+|+++|+|++.++..+++.+++.|+.. +.+.||+.+.++|+.|+.
T Consensus 17 A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~---~~~~~s~~~~~vL~~A~~ 93 (150)
T 2y1q_A 17 AQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEMS---QTIHYTPRAKKVIELSMD 93 (150)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------CCEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCccc---ccCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999888643 467899999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCCCCC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEPGSV 136 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~~~~ 136 (138)
+|+.+++ +||+++|||+|++.++++.+..+|+.+|++.+.+++.+.++|+++.+
T Consensus 94 ~A~~~~~-~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~~~~ 147 (150)
T 2y1q_A 94 EARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNNET 147 (150)
T ss_dssp HHHHTTC-SSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHCC--
T ss_pred HHHHcCC-CeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCCCCC
Confidence 9999999 99999999999998877888899999999999999999999987654
No 5
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.95 E-value=1.3e-27 Score=160.72 Aligned_cols=124 Identities=27% Similarity=0.268 Sum_probs=112.4
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCC-CCCC-CC-CCCCCCCHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG-DFFF-FS-PEHPPLTEDAQRVIDW 78 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~-~~~~-~~-~~~~~~S~~l~~~l~~ 78 (138)
|+++|.+++|++|+|||||++|++++ .+..+|+++|+|++.++..+++.+++. |+.+ +. .+.+++|+.++++|+.
T Consensus 13 A~~~A~~~~~~~i~~eHlLlaLl~~~--~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~~l~~ 90 (143)
T 1k6k_A 13 AFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQR 90 (143)
T ss_dssp HHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHcCc--hHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 78999999999999999999999876 389999999999999999999999876 7653 11 2468899999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHH
Q 032554 79 AVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELES 128 (138)
Q Consensus 79 A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~ 128 (138)
|+.+|+.+++ +||+++|||+|+++++++++.++|+.+|++++.+++.+.
T Consensus 91 A~~~A~~~~~-~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 91 AVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp HHHHHHSSSC-SCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCC-CccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999 999999999999998878889999999999999998875
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.94 E-value=7e-26 Score=177.99 Aligned_cols=130 Identities=31% Similarity=0.429 Sum_probs=121.3
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++||.++++.+..+|+++|+|++.++..+++.+++.|.. .+.|+||+.++++|+.|+.
T Consensus 17 A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~~~~S~~~~~vL~~A~~ 93 (468)
T 3pxg_A 17 AQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTIHYTPRAKKVIELSMD 93 (468)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSSCEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC---CCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998877753 2347899999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCCCC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEPGS 135 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~~~ 135 (138)
+|+.+++ ++|+++|||+||+.++++++.++|+.+|++.+.+++.+.+++++..
T Consensus 94 ~A~~~g~-~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~ 146 (468)
T 3pxg_A 94 EARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146 (468)
T ss_dssp HHHTTTC-SSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred HHHHcCC-CeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCc
Confidence 9999999 9999999999999998899999999999999999999999887554
No 7
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.93 E-value=1.4e-25 Score=155.21 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=110.6
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||+||++++++.+..+|+++|+|++.+++.++ .+++.|+.. ++.|++|+.++++|+.|+.
T Consensus 36 A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~~~--~~~~~~S~~l~~vL~~A~~ 112 (171)
T 3zri_A 36 AASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQVL--DTYPAFSPLLVELLQEAWL 112 (171)
T ss_dssp HHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCCCC--SSCCEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCCCC--CCCCCcCHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999 999888643 3568999999999999999
Q ss_pred HHH-hcCCCCCCCHHHHHHHHhcCCCcH-HHHHHHH-cCCCHHHHHHHHHhhcCCCC
Q 032554 82 HKL-KSGNSGEVTASDLLLGIWSETDSP-GHKILAA-LGFSDEKAKELESLSSEPGS 135 (138)
Q Consensus 82 ~A~-~~~~~~~I~~~hlLlall~~~~~~-~~~~l~~-~gi~~~~l~~~i~~~r~~~~ 135 (138)
+|+ ++++ +||+++|||+||++++..+ ...+-.. ..|+.+.+++.+..+-+++.
T Consensus 113 ~A~l~~gd-~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~~~~~~s~ 168 (171)
T 3zri_A 113 LSSTELEQ-AELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSDSA 168 (171)
T ss_dssp HHHTTTCC-SSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHHHHTTTCT
T ss_pred HHHHHcCC-CEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHHHHHhcCc
Confidence 999 9999 9999999999999875211 1122222 36789999887776655544
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.92 E-value=9e-25 Score=179.88 Aligned_cols=131 Identities=31% Similarity=0.426 Sum_probs=122.5
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++||.++++.+.++|+++|+|++.+++.+++.+++.|.. .+.++||+.++++|+.|+.
T Consensus 17 A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~~~~s~~~~~vl~~A~~ 93 (758)
T 3pxi_A 17 AQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTIHYTPRAKKVIELSMD 93 (758)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSSCEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC---CCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999887754 2458899999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCCCCC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEPGSV 136 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~~~~ 136 (138)
+|..+++ ++|+++|||+||++++++++.++|+.+|++.+.+++.+.+++++..+
T Consensus 94 ~A~~~~~-~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~~ 147 (758)
T 3pxi_A 94 EARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNET 147 (758)
T ss_dssp HHHTTTC-SSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHcCC-CcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCCcc
Confidence 9999999 99999999999999988999999999999999999999999886543
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.87 E-value=8e-22 Score=162.22 Aligned_cols=126 Identities=27% Similarity=0.267 Sum_probs=113.9
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcC-CCCCCCC--CCCCCCCHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGK-GDFFFFS--PEHPPLTEDAQRVIDW 78 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~-~~~~~~~--~~~~~~S~~l~~~l~~ 78 (138)
|+++|.+++|++|+|||||++||+++ .+..+|+++|+|++.+++.++..+++ .|..++. .+.+.+|+.++++|+.
T Consensus 13 A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~vl~~ 90 (758)
T 1r6b_X 13 AFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQR 90 (758)
T ss_dssp HHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHHHHHHH
Confidence 78999999999999999999999853 58999999999999999999999987 6654321 2468899999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhh
Q 032554 79 AVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLS 130 (138)
Q Consensus 79 A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~ 130 (138)
|+.+|+.+++ ++|+++|||+||+.++++++..+|+.+|++...+.+.+...
T Consensus 91 A~~~a~~~~~-~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~ 141 (758)
T 1r6b_X 91 AVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141 (758)
T ss_dssp HHHHHHHHTC-SSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC
T ss_pred HHHHHHHcCC-CEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHh
Confidence 9999999999 99999999999999888889999999999999999888765
No 10
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.86 E-value=3.3e-21 Score=160.51 Aligned_cols=125 Identities=15% Similarity=0.046 Sum_probs=112.5
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
|+++|.+++|++|+|||||++||.++++.+..+|+++|+|++.++..++..+++.|...+....+.+|+.++++|+.|+.
T Consensus 17 A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~A~~ 96 (854)
T 1qvr_A 17 AQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEG 96 (854)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999988754323468899999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCCCCC
Q 032554 82 HKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEPGSV 136 (138)
Q Consensus 82 ~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~~~~ 136 (138)
+|+.+++ .||+++|||+||+.++++ + ++...++..+.+++++.++
T Consensus 97 ~a~~~g~-~~I~~ehlLlall~~~~~-~--------~~~~~~~~~~~~~~~~~~~ 141 (854)
T 1qvr_A 97 LMEELKD-RYVAVDTLVLALAEATPG-L--------PGLEALKGALKELRGGRTV 141 (854)
T ss_dssp HHHTTTC-SSCCHHHHHHHHHHHSTT-S--------CCHHHHHHHHTSSCSCCSS
T ss_pred HHHHcCC-cEeeHHHHHHHHHhcccc-c--------CCHHHHHHHHHHhcccccc
Confidence 9999999 999999999999987653 1 7899999999988876544
No 11
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.36 E-value=3.8e-12 Score=85.37 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcCC
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSEP 133 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~~ 133 (138)
.||+.++++|+.|..+|+.+++ .+|+++|||+||++++++.+.++|+.+|+|++.+++.+.+..+.
T Consensus 6 ~~t~~~~~~l~~A~~~A~~~~~-~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~ 71 (146)
T 3fh2_A 6 RFTDRARRVIVLAQEEARMLNH-NYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQ 71 (146)
T ss_dssp GBCHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCC
T ss_pred hcCHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999999 99999999999999888999999999999999999999987654
No 12
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.31 E-value=7e-12 Score=84.00 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
.||+.++++|+.|..+|..+++ .+|+++|||+||++++++.+.++|+++|+|++.+++.++..-+
T Consensus 7 ~~T~~a~~~l~~A~~~A~~~~~-~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~ 71 (145)
T 3fes_A 7 RFTQRAKKAIDLAFESAKSLGH-NIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEG 71 (145)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 6999999999999999999999 9999999999999988899999999999999999999887644
No 13
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.26 E-value=2.9e-11 Score=80.85 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
.||+.++++|+.|...|..+++ .+|+++|||+|+++++++.+..+|+.+|+|.+.+++.++..-
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~-~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDN-QFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQAL 68 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5899999999999999999999 999999999999999889999999999999999999987753
No 14
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.24 E-value=2.6e-11 Score=81.30 Aligned_cols=65 Identities=29% Similarity=0.411 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
.||+.++++|+.|..+|..+++ .+|+++|||+|+++++++.+..+|+++|+|.+.+++.++..-+
T Consensus 5 ~~t~~~~~al~~A~~~A~~~~h-~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~ 69 (150)
T 2y1q_A 5 RFTERAQKVLALAQEEALRLGH-NNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIG 69 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999 9999999999999988899999999999999999999887644
No 15
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.23 E-value=4.3e-11 Score=82.43 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHH
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELES 128 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~ 128 (138)
.||+.++++|+.|..+|..+++ .+|+++|||+||++++++.+.++|+++|+|++.+++.++
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h-~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~ 84 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQH-PEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA 84 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTC-SEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH
Confidence 4899999999999999999999 999999999999999999999999999999999999888
No 16
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.07 E-value=2.6e-10 Score=75.80 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhh
Q 032554 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLS 130 (138)
Q Consensus 68 ~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~ 130 (138)
||+.++++|+.|..+|..+++ .+|+++|||+|+++++ .+..+|+++|+|.+.+++.++..
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~-~~i~~eHlLlaLl~~~--~~~~iL~~~g~~~~~l~~~l~~~ 61 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRH-EFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAF 61 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTB-SEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHcCc--hHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999999999999999 9999999999999866 38899999999999999887764
No 17
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.92 E-value=3.9e-09 Score=82.79 Aligned_cols=65 Identities=29% Similarity=0.411 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
.||+.++++|+.|...|+.++| .+|+++|||+||+.++++.+..+|+.+|+|.+.+++.++..-+
T Consensus 5 ~ft~~a~~al~~A~~~A~~~~h-~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~ 69 (468)
T 3pxg_A 5 RFTERAQKVLALAQEEALRLGH-NNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIG 69 (468)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSC
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999 9999999999999998899999999999999999999988754
No 18
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.79 E-value=2e-08 Score=82.79 Aligned_cols=65 Identities=29% Similarity=0.411 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
.||+.++++|+.|...|..+++ .+|+++|||+||+.++++.+..+|+.+|+|.+.+++.++..-+
T Consensus 5 ~~t~~a~~~l~~A~~~A~~~~h-~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~ 69 (758)
T 3pxi_A 5 RFTERAQKVLALAQEEALRLGH-NNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIG 69 (758)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSC
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999 9999999999999998899999999999999999999988654
No 19
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.65 E-value=6.2e-08 Score=80.91 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhh
Q 032554 67 PLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLS 130 (138)
Q Consensus 67 ~~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~ 130 (138)
.||+.++++|+.|...|..+++ .+|+++|||+||+.++++.+..+|+.+|+|.+.+++.++..
T Consensus 5 ~~t~~a~~al~~A~~~A~~~~h-~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~ 67 (854)
T 1qvr_A 5 RWTQAAREALAQAQVLAQRMKH-QAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERE 67 (854)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5899999999999999999999 99999999999999988999999999999999999988765
No 20
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.49 E-value=1.8e-07 Score=76.99 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhh
Q 032554 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLS 130 (138)
Q Consensus 68 ~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~ 130 (138)
||+.++++|+.|..+|+.+++ .+|+++|||+||+++ +.+..+|+.+|+|.+.+++.++..
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h-~~i~~eHLLlaLl~~--~~~~~iL~~~gvd~~~l~~~l~~~ 61 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRH-EFMTVEHLLLALLSN--PSAREALEACSVDLVALRQELEAF 61 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTB-SEECHHHHHHHHTTS--HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHcC--cHHHHHHHHcCCCHHHHHHHHHHH
Confidence 799999999999999999999 999999999999985 357899999999999999888764
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=94.59 E-value=0.38 Score=32.08 Aligned_cols=95 Identities=12% Similarity=-0.104 Sum_probs=57.2
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHH--HCCCCHHHHHHHHHHHHcCCCCCCCCCCC----CCCCHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLW--ANGVTLFKVRDESVKIVGKGDFFFFSPEH----PPLTEDAQRV 75 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~--~~g~~~~~l~~~l~~~l~~~~~~~~~~~~----~~~S~~l~~~ 75 (138)
|...|...+...|.++|+++++=.-+. ..+.. ...+....+..-+.+. +. ...+. ... -.++.-+..+
T Consensus 46 A~~~a~ha~RKTv~a~DV~~a~~~lg~---~~v~d~~~l~lP~a~V~Ri~k~~-g~-~RVS~-~A~~~l~~~le~f~~~I 119 (154)
T 1f1e_A 46 AKSVLDASGKKTLMEEHLKALADVLMV---EGVEDYDGELFGRATVRRILKRA-GI-ERASS-DAVDLYNKLICRATEEL 119 (154)
T ss_dssp HHHHHHTTTCSEECHHHHHHHHHHHTC---TTSTTCCSCCCCHHHHHHHHHHT-TC-CEECH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHhccc---ccCCccccccCCccHHHHHHHHc-CC-ccchH-HHHHHHHHHHHHHHHHH
Confidence 567888999999999999999933211 00111 2234444444433332 10 01100 000 0134445667
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q 032554 76 IDWAVDHKLKSGNSGEVTASDLLLGIWS 103 (138)
Q Consensus 76 l~~A~~~A~~~~~~~~I~~~hlLlall~ 103 (138)
...|..+|...+. ..|+++|+++|+-.
T Consensus 120 ~~~A~~~a~ha~R-KTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 120 GEKAAEYADEDGR-KTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CccCHHHHHHHHHh
Confidence 7888999999888 99999999999853
No 22
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=86.09 E-value=1 Score=28.68 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHH
Q 032554 40 VTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDA----QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILA 114 (138)
Q Consensus 40 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l----~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~ 114 (138)
..+..+...+.+.-.. ... +....++++.-+ .++++.|...|+..+. ..|+++|+-+|+-.|. ....++.
T Consensus 23 fPV~ri~R~Lk~~~~a-~RV-~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~-~rItp~hi~lAI~nDe--EL~~Ll~ 96 (120)
T 2f8n_G 23 FPVGRMLRYIKKGHPK-YRI-GVGAPVYMAAVLEYLTAEILELAVNAARDNKK-GRVTPRHILLAVANDE--ELNQLLK 96 (120)
T ss_dssp SCHHHHHHHHHHHSSS-CEE-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSH--HHHHHTT
T ss_pred CChHHHHHHHHcCccc-ccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceEcHHHHHHHHhcCH--HHHHHhC
Confidence 4566666666543111 111 111223444443 3788889999998888 9999999999997653 3445543
No 23
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=86.07 E-value=1 Score=28.82 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHH
Q 032554 72 AQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILA 114 (138)
Q Consensus 72 l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~ 114 (138)
+.++++.|...|+..+. ..|+++|+-+|+-.|. ....++.
T Consensus 58 ~aEIlelAgn~A~~~k~-krItp~hi~lAI~nDe--EL~~Ll~ 97 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKK-TRIIPRHLQLAIRNDE--ELNKLLS 97 (123)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSH--HHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC-ccccHHHHHHHHhccH--HHHHHhc
Confidence 34678889999998888 9999999999997653 3445543
No 24
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=85.80 E-value=1 Score=29.11 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHH
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILA 114 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~ 114 (138)
.++++.|...|+..+. ..|+++|+-+|+-.|. ....++.
T Consensus 61 aEIlelAgn~A~~~k~-krItp~hI~lAI~nDe--EL~~Ll~ 99 (131)
T 1id3_C 61 AEILELAGNAARDNKK-TRIIPRHLQLAIRNDD--ELNKLLG 99 (131)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHHHTCH--HHHHHTT
T ss_pred HHHHHHHHHHHhhcCC-ceEcHHHHHHHHhccH--HHHHHhc
Confidence 4688889999999888 9999999999997653 3455553
No 25
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=85.56 E-value=1.1 Score=28.91 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHH
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILA 114 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~ 114 (138)
.++++.|...|+..+. ..|+++|+-+|+-.|. ....++.
T Consensus 61 aEIlelAgn~A~~~k~-krItp~hi~lAI~nDe--EL~~L~~ 99 (129)
T 1tzy_A 61 AEILELAGNAARDNKK-TRIIPRHLQLAIRNDE--ELNKLLG 99 (129)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSH--HHHHHTT
T ss_pred HHHHHHHHHHHHhcCC-CeEcHHHHHHHHhccH--HHHHHhC
Confidence 4688889999998888 9999999999997653 3445553
No 26
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=85.44 E-value=0.96 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
.++++.|...|+..+. ..|+++|+-+|+-.|.
T Consensus 64 aEIlelAgn~A~~~k~-krItprhi~lAI~nDe 95 (128)
T 1f66_C 64 AEVLELAGNASKDLKV-KRITPRHLQLAIRGDE 95 (128)
T ss_dssp HHHHHHHHHHHHTTTC-SEECHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCC-CeEcHHHHHHHHhccH
Confidence 4788889999998888 9999999999997753
No 27
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=82.44 E-value=1.6 Score=26.80 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 68 ~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
+..-+.++++.|..+|+..+- ..|+++|+.+||=..
T Consensus 59 le~~~~~V~~dA~~~a~hakR-ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 59 LKVFLENVIRDAVTYTEHAKR-KTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHc
Confidence 345667788999999999888 999999999998654
No 28
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=82.27 E-value=1.7 Score=26.77 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 68 ~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
+..-+.++++.|..+|+..+- ..|+++|+.+||=..
T Consensus 59 le~~~~~V~~dA~~~a~hakR-ktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 59 LKTFLESVIRDAVTYTEHAKR-KTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 345567788999999999888 999999999998643
No 29
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=82.16 E-value=1.7 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHH
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILA 114 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~ 114 (138)
.++++.|...|+..+. ..|+++|+-+|+-.|. ....++.
T Consensus 80 aEILelAgn~A~~~kr-krItprhI~lAI~nDe--EL~~Ll~ 118 (149)
T 2f8n_K 80 AEILELAGNAARDNKK-TRIIPRHLQLAIRNDE--ELNKLLG 118 (149)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHHHHSH--HHHHHTT
T ss_pred HHHHHHHHHHHHhcCC-CcCcHHHHHHHHhccH--HHHHHhc
Confidence 4688889999998888 9999999999998753 3445553
No 30
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=79.75 E-value=2.4 Score=23.98 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGI 101 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlal 101 (138)
.-+..+++.|..+|...+- ..|+++++.+|+
T Consensus 38 ~~~~~v~~dA~~~a~hakR-kTI~~~DV~lA~ 68 (70)
T 1ku5_A 38 EYAIEIAKKAVEFARHAGR-KTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHTTTC-SEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHH
Confidence 4456688889999999888 999999999986
No 31
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=77.84 E-value=3.5 Score=28.26 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=60.2
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHh-hcCCcHHHHH-------HH-------------HCC--CCHHHHHHHHHHHHcCCCC
Q 032554 2 GELEARKLKHPTTGTEAILMGIL-VEGTSLAAKF-------LW-------------ANG--VTLFKVRDESVKIVGKGDF 58 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall-~~~~~~~~~i-------l~-------------~~g--~~~~~l~~~l~~~l~~~~~ 58 (138)
|..++...+...+++..+-.|+= --+..+.... +. ++| ..+..+...+.+.-.....
T Consensus 45 A~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~~~~a~~R 124 (192)
T 2jss_A 45 ASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATGRTR 124 (192)
T ss_dssp HHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcCCHHHHHHHHHhcCccccc
Confidence 34455566777899988876651 1111122111 11 234 3555665555543211111
Q ss_pred CCCCCCCCCCCHH----HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHH
Q 032554 59 FFFSPEHPPLTED----AQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKIL 113 (138)
Q Consensus 59 ~~~~~~~~~~S~~----l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l 113 (138)
. +....++++.- +.++++.|...|+..+. ..|+++|+-+|+-.|. ....++
T Consensus 125 v-~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~-~~I~p~~i~lAi~nD~--eL~~L~ 179 (192)
T 2jss_A 125 V-GSKAAIYLTAVLEYLTAEVLELAGNAAKDLKV-KRITPRHLQLAIRGDD--ELDSLI 179 (192)
T ss_dssp C-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCHHHHHHHHHTSH--HHHHHH
T ss_pred c-ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHhccH--HHHHHH
Confidence 1 11122333332 34678889999988888 9999999999997653 344555
No 32
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=73.81 E-value=4.7 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 74 RVIDWAVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 74 ~~l~~A~~~A~~~~~~~~I~~~hlLlall 102 (138)
.+++.|+..|...+- .-|.++|+.+|+-
T Consensus 38 ~l~~~A~~~a~~~kR-kTI~~~Di~~A~~ 65 (68)
T 1b67_A 38 EIASEAVKLAKHAGR-KTIKAEDIELARK 65 (68)
T ss_dssp HHHHHHHHHHHHTTC-SEECHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCC-CccCHHHHHHHHH
Confidence 455667777888788 8999999999973
No 33
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=69.70 E-value=10 Score=21.43 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall 102 (138)
.-...+++.|..+|...|. ..|+.+++=+|+-
T Consensus 33 ry~~~il~dA~~~a~HAgr-ktv~~eDVkLAi~ 64 (68)
T 1taf_A 33 RYVTSILDDAKVYANHARK-KTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CCCCHHHHHHHHH
Confidence 3457789999999999999 9999999999974
No 34
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=68.79 E-value=6.5 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 68 ~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
+..-+.+++++|..++...+- ..|+++++.+||=..
T Consensus 58 le~fi~~I~~dA~~~a~HakR-KTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 58 LKSFLESVIRDSVTYTEHAKR-KTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 345667788899999998888 999999999998654
No 35
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=68.76 E-value=6.9 Score=23.61 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 74 RVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 74 ~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
.+.+.|+..|+..+. ..|...||..|+-.++
T Consensus 56 ~l~~~A~~~a~~~kr-ktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 56 ELTLRAWIHTEDNKR-RTLQRNDIAMAITKFD 86 (97)
T ss_dssp HHHHHHHHHHHHTTC-SEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHcCC-ccCCHHHHHHHHhcCc
Confidence 355678888888777 8999999999987653
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=68.17 E-value=3.7 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 74 RVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 74 ~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
++.+.|+..|+..+. ..|.+.||-.++-.++
T Consensus 48 el~~~A~~~a~~~kr-ktI~~~di~~av~~~e 78 (98)
T 1jfi_A 48 SLLKKACQVTQSRNA-KTMTTSHLKQCIELEG 78 (98)
T ss_dssp HHHHHHHHHHHTC----CBCHHHHHTTCC---
T ss_pred HHHHHHHHHHHHcCC-CeecHHHHHHHHhcCc
Confidence 466788999988888 8999999999987654
No 37
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=67.78 E-value=6.6 Score=23.04 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 68 LTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 68 ~S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
+..-+.++++.|..++...+- ..|+++++.+||=..
T Consensus 40 l~~~~~~I~~dA~~~a~ha~R-KTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKR-KTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 456677788999999999888 999999999998543
No 38
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=67.51 E-value=12 Score=23.29 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCC
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETD 106 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~ 106 (138)
.-+..+...|..+|+..+- ..|+.+++.+++=..+.
T Consensus 39 ~f~~~v~~da~~~A~HA~R-KTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 39 RYFKQISSDLEAYSQHAGR-KTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHCCC
Confidence 3446688889999999888 99999999999976543
No 39
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=67.49 E-value=7.2 Score=24.53 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 74 RVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 74 ~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
.+.+.|+..|+..+. ..|++.||..|+-.++
T Consensus 78 ~L~~~A~~~a~~~kr-ktI~~~di~~Av~~~e 108 (119)
T 4g92_C 78 ELTMRAWIHAEDNKR-RTLQRSDIAAALSKSD 108 (119)
T ss_dssp HHHHHHHHHHHHTTC-SEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhccc-CccCHHHHHHHHhcCc
Confidence 355778888888888 8999999999997653
No 40
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=65.43 E-value=2.2 Score=27.09 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.4
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcC
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEG 27 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~ 27 (138)
|-+.|...+...|+|+|+-+|+=+++
T Consensus 64 Agn~A~~~k~~rItp~hi~lAI~nDe 89 (120)
T 2f8n_G 64 AVNAARDNKKGRVTPRHILLAVANDE 89 (120)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHTSH
T ss_pred HHHHHhhcCCceEcHHHHHHHHhcCH
Confidence 45678888999999999999987754
No 41
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=64.60 E-value=11 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWS 103 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~ 103 (138)
..++..+.+.|...|...+. ..|+.+||..|+-+
T Consensus 39 GADi~~l~~eA~~~a~~~~~-~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 39 GAEVKGVCTEAGMYALRERR-VHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Confidence 46788999999999988777 89999999998753
No 42
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=63.68 E-value=2.4 Score=27.25 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=21.9
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcC
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEG 27 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~ 27 (138)
|-+.|...+...|+|+|+-+|+-+++
T Consensus 70 Agn~A~~~k~krItprhi~lAI~nDe 95 (128)
T 1f66_C 70 AGNASKDLKVKRITPRHLQLAIRGDE 95 (128)
T ss_dssp HHHHHHTTTCSEECHHHHHHHHHHSH
T ss_pred HHHHHHhcCCCeEcHHHHHHHHhccH
Confidence 55678888999999999999997754
No 43
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=63.02 E-value=3.1 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=21.9
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcC
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEG 27 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~ 27 (138)
|-+.|...+...|+|+|+-+|+-+++
T Consensus 65 Agn~A~~~k~krItp~hi~lAI~nDe 90 (123)
T 2nqb_C 65 AGNAARDNKKTRIIPRHLQLAIRNDE 90 (123)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHhcCCccccHHHHHHHHhccH
Confidence 55678889999999999999997754
No 44
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=62.89 E-value=18 Score=20.50 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGI 101 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlal 101 (138)
.-.+.++++.|...++..+. ..++++++=.|+
T Consensus 37 Eyr~~eI~qeA~kfmrHakR-k~Lt~~DI~~Al 68 (70)
T 1taf_B 37 SIKLKRIVQDAAKFMNHAKR-QKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHH
Confidence 45678899999999999999 999999987775
No 45
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=61.88 E-value=3.3 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=25.3
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFLW 36 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il~ 36 (138)
|-+.|...+...|+|+|+-+|+-+++ .+..+|.
T Consensus 67 Agn~A~~~k~krItp~hI~lAI~nDe--EL~~Ll~ 99 (131)
T 1id3_C 67 AGNAARDNKKTRIIPRHLQLAIRNDD--ELNKLLG 99 (131)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHTCH--HHHHHTT
T ss_pred HHHHHhhcCCceEcHHHHHHHHhccH--HHHHHhc
Confidence 55678889999999999999997754 3455543
No 46
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=61.77 E-value=3.3 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=24.4
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFL 35 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il 35 (138)
|-+.|...+...|+|+|+-+|+-+++ .+..+|
T Consensus 67 Agn~A~~~k~krItp~hi~lAI~nDe--EL~~L~ 98 (129)
T 1tzy_A 67 AGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLL 98 (129)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHT
T ss_pred HHHHHHhcCCCeEcHHHHHHHHhccH--HHHHHh
Confidence 55678889999999999999997754 344444
No 47
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=59.26 E-value=18 Score=20.66 Aligned_cols=26 Identities=4% Similarity=0.064 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 032554 75 VIDWAVDHKLKSGNSGEVTASDLLLGI 101 (138)
Q Consensus 75 ~l~~A~~~A~~~~~~~~I~~~hlLlal 101 (138)
+-..|...|...+. .-|+.+|++.|+
T Consensus 42 la~eA~~~a~~~~r-KTI~~~dI~~A~ 67 (76)
T 3b0c_W 42 LAEEARTNAFENKS-KIIKPEHTIAAA 67 (76)
T ss_dssp HHHHHHHHHHHHTC-SSBCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCCCHHHHHHHH
Confidence 33456777877788 899999999886
No 48
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=56.95 E-value=21 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHH------------HHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 66 PPLTEDAQRVIDW------------AVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 66 ~~~S~~l~~~l~~------------A~~~A~~~~~~~~I~~~hlLlall 102 (138)
..+|.+...++.. |+..|...+- ..|..+|++.|+-
T Consensus 26 ~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kR-kTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 26 GKIAKDAKECVQECVSEFISFITSEASERCHQEKR-KTINGEDILFAMS 73 (93)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHH
Confidence 3466666555544 5666777777 8999999999985
No 49
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=55.19 E-value=7.4 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=24.4
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFL 35 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il 35 (138)
|-+.|...+...|+|+|+-+|+-+++ ....++
T Consensus 148 A~n~a~~~~~~~I~p~~i~lAi~nD~--eL~~L~ 179 (192)
T 2jss_A 148 AGNAAKDLKVKRITPRHLQLAIRGDD--ELDSLI 179 (192)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHTSH--HHHHHH
T ss_pred HHHHHHhcCCCccCHHHHHHHHhccH--HHHHHH
Confidence 55678888999999999999997754 344444
No 50
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=54.75 E-value=5.1 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=24.4
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCcHHHHHH
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTSLAAKFL 35 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~~~~~il 35 (138)
|.+.|...+...|+|+|+-+|+-+++ .+..+|
T Consensus 86 Agn~A~~~krkrItprhI~lAI~nDe--EL~~Ll 117 (149)
T 2f8n_K 86 AGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLL 117 (149)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHSH--HHHHHT
T ss_pred HHHHHHhcCCCcCcHHHHHHHHhccH--HHHHHh
Confidence 55678888999999999999997754 244444
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=52.97 E-value=26 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
-.-+.+++.+|..++...+- .-|+.+++.+|+=..+
T Consensus 78 ~~~l~~i~rdav~yaehA~R-KTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 78 KSFLESVIRDSVTYTEHAKR-KTVTSLDVVYALKRQG 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcCcHHHHHHHHHhCC
Confidence 44556677889999999888 9999999999986554
No 52
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=52.84 E-value=27 Score=19.10 Aligned_cols=45 Identities=22% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCCcCHHHHHHHHhhcCCc--HHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 11 HPTTGTEAILMGILVEGTS--LAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 11 ~~~i~~eHlLlall~~~~~--~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
|...-+|-.++..+....| .+..+-+++||+.+.+...+.+.-.+
T Consensus 6 ~~~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 6 HHHMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp CSCCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred hhhhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4444556666667766555 45888999999999999888765443
No 53
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=52.16 E-value=24 Score=20.04 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
..++..+.+.|...|...+. ..|+.+||..|+-..
T Consensus 34 GADi~~l~~eAa~~ai~~~~-~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 34 GAVIAAIMQEAGLRAVRKNR-YVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCcCHHHHHHHHHHH
Confidence 46888999999999988777 889999999988664
No 54
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=51.07 E-value=32 Score=19.92 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
..++..+...|...|...+. ..|+.+||.-|+-..
T Consensus 37 GADl~~l~~eAa~~a~r~~~-~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 37 GAELRSVCTEAGMFAIRARR-KVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-SSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHH
Confidence 46789999999999987777 889999999998653
No 55
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=50.44 E-value=17 Score=21.29 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHH
Q 032554 74 RVIDWAVDHKLKSGNSGEVTASDLL 98 (138)
Q Consensus 74 ~~l~~A~~~A~~~~~~~~I~~~hlL 98 (138)
+++..|...|..-+. .+|+.+||=
T Consensus 47 EAv~RA~~~a~~e~~-~~le~~~LE 70 (81)
T 3b0b_C 47 EAAARAARQAQAEDL-EKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHHHHHTTC-SEECHHHHH
T ss_pred HHHHHHHHHHHhCCC-CeecHHHHH
Confidence 344555666666677 899999984
No 56
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=48.91 E-value=26 Score=20.62 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHH
Q 032554 74 RVIDWAVDHKLKSGNSGEVTASDLLL 99 (138)
Q Consensus 74 ~~l~~A~~~A~~~~~~~~I~~~hlLl 99 (138)
+++..|...|..-++ .+|+.+||--
T Consensus 51 EAv~RA~~~a~~e~~-~~le~e~LEk 75 (84)
T 4dra_E 51 EAAVRGVRQAQAEDA-LRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHHHHTTC-SSBCHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CcccHHHHHH
Confidence 344555566666677 8999999843
No 57
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=48.20 E-value=15 Score=21.38 Aligned_cols=42 Identities=5% Similarity=-0.061 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCC-cHHHHHHHHcCCCHHHHHHHHHhhcCCCCC
Q 032554 95 SDLLLGIWSETD-SPGHKILAALGFSDEKAKELESLSSEPGSV 136 (138)
Q Consensus 95 ~hlLlall~~~~-~~~~~~l~~~gi~~~~l~~~i~~~r~~~~~ 136 (138)
+.+|-+|-+... --+..+.+..|++...+.+++.++++.+++
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 344555443222 235788999999999999999998875543
No 58
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=47.39 E-value=19 Score=20.59 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHc
Q 032554 30 LAAKFLWANGVTLFKVRDESVKIVG 54 (138)
Q Consensus 30 ~~~~il~~~g~~~~~l~~~l~~~l~ 54 (138)
.+.++....|+|++.+.++|+..+.
T Consensus 40 tLeeA~~~hgiD~d~ll~eLn~~i~ 64 (76)
T 2k53_A 40 SIEDACAVHGIDADKLVKELNEYFE 64 (76)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3577788888999988888887764
No 59
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=46.97 E-value=29 Score=19.59 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHc
Q 032554 31 AAKFLWANGVTLFKVRDESVKIVG 54 (138)
Q Consensus 31 ~~~il~~~g~~~~~l~~~l~~~l~ 54 (138)
+.+.....|+|++.|.++|+..+.
T Consensus 43 L~~Aa~~~gid~~~ll~~Ln~~~~ 66 (73)
T 2k5e_A 43 LEQGANAHGLNVEDILRDLNALAL 66 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567788889999988888887764
No 60
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=46.05 E-value=50 Score=20.27 Aligned_cols=68 Identities=15% Similarity=0.028 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCC-----CCC-CCCCCCCCCHHHHHHHHHHHHHHHh
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGD-----FFF-FSPEHPPLTEDAQRVIDWAVDHKLK 85 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~-----~~~-~~~~~~~~S~~l~~~l~~A~~~A~~ 85 (138)
++|..|...+.....++-+.+|++...+...++....++- ... .....+.+|+.-..+++........
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 108 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQE 108 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHHHHHH
Confidence 3455555555556788999999999999888887765531 110 0112357899999988877665543
No 61
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=44.70 E-value=37 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWS 103 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~ 103 (138)
..++..+.+.|...|...+. ..|+.+||..|+-.
T Consensus 47 GADL~~l~~eAa~~alr~~~-~~I~~~df~~Al~~ 80 (86)
T 2krk_A 47 GAEVKGVCTEAGMYALRERR-VHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 47788899999999987777 78999998888743
No 62
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=44.36 E-value=36 Score=18.13 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=20.4
Q ss_pred cCCCcHHHHHHHHcCCCHHHHHHHHHh
Q 032554 103 SETDSPGHKILAALGFSDEKAKELESL 129 (138)
Q Consensus 103 ~~~~~~~~~~l~~~gi~~~~l~~~i~~ 129 (138)
.+..++..++|...+.|.......+..
T Consensus 23 ~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 23 SDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp CCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred CccccHHHHHHHHccCCHHHHHHHhhh
Confidence 456688899999998888876666543
No 63
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=43.51 E-value=34 Score=21.11 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 30 LAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 30 ~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
.+-+-|.+.|+|.+.|+.++++++-.
T Consensus 42 ~AL~~L~qqGvdmerLraAle~~im~ 67 (117)
T 3tl8_B 42 AALRGLVQQGVNLEHLRTALERHVMQ 67 (117)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34566789999999999999999864
No 64
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=42.89 E-value=27 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 30 LAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 30 ~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
.+-+-|.+.|+|.+.|+.++++++-.
T Consensus 25 aaL~~L~qqGvdmerLr~Al~~~i~~ 50 (101)
T 2lf6_A 25 EALRRLTQEGVDMERLRTSLGRYIMS 50 (101)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34556778899999999999999864
No 65
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=42.84 E-value=58 Score=20.16 Aligned_cols=79 Identities=8% Similarity=-0.031 Sum_probs=50.0
Q ss_pred HHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCC-----CCCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 032554 17 EAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG-----DFFF-FSPEHPPLTEDAQRVIDWAVDHKLKSGNSG 90 (138)
Q Consensus 17 eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~-----~~~~-~~~~~~~~S~~l~~~l~~A~~~A~~~~~~~ 90 (138)
-++|..|...+.-...++-+.+|++...+...++....++ +... .....+.+|+.-..+++.........-- .
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~-~ 122 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLP-Q 122 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHHHTTSC-T
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHHHHHHH-h
Confidence 3455556566655678899999999999988887766543 1110 0112356899999999887766554433 4
Q ss_pred CCCHHH
Q 032554 91 EVTASD 96 (138)
Q Consensus 91 ~I~~~h 96 (138)
.++++.
T Consensus 123 ~l~~~e 128 (149)
T 4hbl_A 123 EFDTTE 128 (149)
T ss_dssp TCCHHH
T ss_pred hCCHHH
Confidence 455443
No 66
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=42.79 E-value=27 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 30 LAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 30 ~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
.+-+-|.+.|+|.+.|+.++++++-.
T Consensus 36 aaL~~L~qqGvdmerLraAle~~i~~ 61 (107)
T 2lf3_A 36 AALQALAQNGINMEDLRAALEAYIVW 61 (107)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34556778899999999999998864
No 67
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=41.22 E-value=28 Score=19.66 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 69 TEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 69 S~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
..++..+.+.|...|...+. ..|+.+||..|+-...
T Consensus 37 GADi~~l~~eA~~~a~~~~~-~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 37 GADINSICQESGMLAVRENR-YIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHHHHGGGTSCC-SSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCcCHHHHHHHHHHHc
Confidence 46788899999999987777 7899999999886643
No 68
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=40.68 E-value=32 Score=22.22 Aligned_cols=30 Identities=7% Similarity=-0.073 Sum_probs=22.9
Q ss_pred HHHHHHHHH-HhcCCCCCCCHHHHHHHHhcCC
Q 032554 75 VIDWAVDHK-LKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 75 ~l~~A~~~A-~~~~~~~~I~~~hlLlall~~~ 105 (138)
+...||..| +..+. ..|+..||..|+-...
T Consensus 57 Lt~~A~~~a~~~~kR-KtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 57 LAGAAYTEEFGQRPG-EALKYEHLSQVVNKNK 87 (140)
T ss_dssp HHHHHHHHHHTTCCS-CEECHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhcCC-cccCHHHHHHHHhcCc
Confidence 345567777 66667 8999999999998654
No 69
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.91 E-value=26 Score=20.27 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=21.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 107 SPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 107 ~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
..+..+-+.+|++...+.+.+..+..
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678888999999999999988744
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=38.27 E-value=68 Score=23.13 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHH
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELES 128 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~ 128 (138)
..+.++++.|+..|...+. ..|+.+|+-.++-..........++.+..+...+..++.
T Consensus 241 r~~~~~l~~a~~~a~~~~~-~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~ 298 (389)
T 1fnn_A 241 RLAIDILYRSAYAAQQNGR-KHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIV 298 (389)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHH
Confidence 5678888999988887777 899999998776543334445555555433334444333
No 71
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=38.02 E-value=44 Score=22.59 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=23.3
Q ss_pred hHHHHHhcCCCCcCHHHHHHHHhhcCCc
Q 032554 2 GELEARKLKHPTTGTEAILMGILVEGTS 29 (138)
Q Consensus 2 A~~~A~~~~~~~i~~eHlLlall~~~~~ 29 (138)
|.+.|...+-..|..+||++||=+.+..
T Consensus 57 A~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 57 ANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 5677888899999999999999876543
No 72
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.85 E-value=51 Score=17.60 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHH
Q 032554 17 EAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKI 52 (138)
Q Consensus 17 eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~ 52 (138)
+.+..+| ....+...++-+.+|++...|...++.+
T Consensus 22 ~~i~~aL-~~~~gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 22 IFIEEKL-REYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHH-HHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHH-HHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 3344444 4334556778888899988888877654
No 73
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=34.96 E-value=49 Score=28.41 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
.++|+.|...|+..+. ..|++.|+.+|+-.+.
T Consensus 139 ~~~l~la~~~~~~~~~-~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 139 ADILKLVGNYVRNIRH-YEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHHHHHHHHHHHHTTC-CBCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCC-ceecCccccccccCCH
Confidence 4588899999999888 8999999999998765
No 74
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=34.73 E-value=38 Score=22.28 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.8
Q ss_pred CHHHHHHHHhcCCCcHHHHHHHHc--------CCCHHHHHHHHHhh
Q 032554 93 TASDLLLGIWSETDSPGHKILAAL--------GFSDEKAKELESLS 130 (138)
Q Consensus 93 ~~~hlLlall~~~~~~~~~~l~~~--------gi~~~~l~~~i~~~ 130 (138)
+..+.+++++.........+.+.+ +++...+...+..+
T Consensus 2 ~l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~L 47 (179)
T 1yg2_A 2 SLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKM 47 (179)
T ss_dssp CHHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHH
Confidence 567888888876666777777766 68999998888876
No 75
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=34.57 E-value=60 Score=19.26 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 75 VIDWAVDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 75 ~l~~A~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
+-..+..+|+..|- ..|.++++.+++=++
T Consensus 52 ia~Dl~~fA~HAgR-kTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 52 MGSDLQAFARHAGR-GVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHHHTTC-SEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCC-CccCHHHHHHHHHhC
Confidence 34556777888888 999999999997654
No 76
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=34.24 E-value=74 Score=20.08 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHH------------HHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 66 PPLTEDAQRVIDW------------AVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 66 ~~~S~~l~~~l~~------------A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
..+|.....+|.. |+..|...+. ..|..+||+.|+-..+
T Consensus 27 ~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kR-KTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 27 ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNH-KTITAKDILQTLTELD 77 (128)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSCCHHHHHHHHHHTT
T ss_pred ceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHHcC
Confidence 3456666555544 5666777777 8999999999997654
No 77
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=34.24 E-value=65 Score=18.74 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=27.3
Q ss_pred HHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 20 LMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 20 Llall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
++.+|..+.-.+.++-+.+|++...+++.|......
T Consensus 22 IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 22 AIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334555444677899999999999999999877543
No 78
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=33.67 E-value=51 Score=20.28 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCC
Q 032554 72 AQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSET 105 (138)
Q Consensus 72 l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~ 105 (138)
+..+...+..+|+..|- ..|.++++.+++=.++
T Consensus 56 ~~~ia~Da~~fA~HAgR-kTI~~eDV~La~Rrn~ 88 (107)
T 3b0b_B 56 CENFARDLEMFARHAKR-STITSEDVKLLARRSN 88 (107)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhcCc-CcCCHHHHHHHHHhCH
Confidence 34466778888998898 9999999999987654
No 79
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=33.34 E-value=69 Score=18.24 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCC
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG 56 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~ 56 (138)
.+|..|...+.-...++-+.+|++...+...++.....+
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~g 62 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRG 62 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345555554555678999999999999999988776653
No 80
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=31.76 E-value=42 Score=18.42 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=15.4
Q ss_pred CcHHHHHHHHCCCCHHHHH
Q 032554 28 TSLAAKFLWANGVTLFKVR 46 (138)
Q Consensus 28 ~~~~~~il~~~g~~~~~l~ 46 (138)
.+.+..|++++|++.+++.
T Consensus 50 ~g~lk~Ilkqagl~~eef~ 68 (70)
T 1whz_A 50 KGTFKRILRDAGLTEEEFH 68 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHh
Confidence 3578899999999987764
No 81
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=31.51 E-value=81 Score=19.23 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHC------CCCHHHHHHHHHHHHcCCCC-------CCCCCCC-CCCCHHHHHHHHHH
Q 032554 16 TEAILMGILVEGTSLAAKFLWAN------GVTLFKVRDESVKIVGKGDF-------FFFSPEH-PPLTEDAQRVIDWA 79 (138)
Q Consensus 16 ~eHlLlall~~~~~~~~~il~~~------g~~~~~l~~~l~~~l~~~~~-------~~~~~~~-~~~S~~l~~~l~~A 79 (138)
.+.++|++|........++.+.+ +++...+...|.+.-..+-- ..+++.. -.+|+.=++.|..-
T Consensus 12 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 89 (117)
T 4esf_A 12 LEGCVLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELF 89 (117)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHH
Confidence 35677788877666677777765 78999999888776654311 0011111 24788888887764
No 82
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=31.27 E-value=76 Score=18.06 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
.++-.|-+.+.-.+.++-+.+|++...++..|+....+
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444444455567899999999999999999876654
No 83
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=31.18 E-value=67 Score=17.83 Aligned_cols=37 Identities=19% Similarity=0.012 Sum_probs=26.9
Q ss_pred HHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 19 ILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 19 lLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
+|..|.+.+.-...++-+.+|++...++..++.....
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4444445444467889999999999999988776543
No 84
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.46 E-value=45 Score=19.15 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCCHHHHHHHH---hcCCC-cHHHHHHHHcCCCHHHHHHHHHhhcCCCC
Q 032554 91 EVTASDLLLGI---WSETD-SPGHKILAALGFSDEKAKELESLSSEPGS 135 (138)
Q Consensus 91 ~I~~~hlLlal---l~~~~-~~~~~~l~~~gi~~~~l~~~i~~~r~~~~ 135 (138)
.++.-+++..+ |.+.+ ..+..+-+++|++...+.+.+..+-+.+.
T Consensus 10 ~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~ 58 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDT 58 (75)
T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 44555555433 33344 55778889999999999999988755443
No 85
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=30.30 E-value=74 Score=18.25 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCcHHHHHHHHCCCCHH-HHHHHHHHHHcC
Q 032554 17 EAILMGILVEGTSLAAKFLWANGVTLF-KVRDESVKIVGK 55 (138)
Q Consensus 17 eHlLlall~~~~~~~~~il~~~g~~~~-~l~~~l~~~l~~ 55 (138)
+-+|.-|...+...+..+-+.+|++.. .+++.|...-..
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 345555556666678999999999999 999988766543
No 86
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=29.29 E-value=81 Score=17.78 Aligned_cols=64 Identities=8% Similarity=-0.086 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC------CCCCCCCCCCHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF------FFSPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~------~~~~~~~~~S~~l~~~l~~A~~ 81 (138)
.+|..|...+.....++-+.+|++...+...++.....+--. .+......+++.-...+.....
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~ 89 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHH
Confidence 455556555555678999999999999998888765543110 1111224578887666655443
No 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.22 E-value=1e+02 Score=20.86 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=22.4
Q ss_pred CC-HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 032554 68 LT-EDAQRVIDWAVDHKLKSGNSGEVTASDLLLG 100 (138)
Q Consensus 68 ~S-~~l~~~l~~A~~~A~~~~~~~~I~~~hlLla 100 (138)
++ .++..+++.|...|...+. ..|+.+|+--+
T Consensus 220 ~~~~dl~~~~~~a~~~a~~~~~-~~I~~~dl~~a 252 (254)
T 1ixz_A 220 FVGADLENLLNEAALLAAREGR-RKITMKDLEEA 252 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcC-CCcCHHHHHHH
Confidence 45 5677777777777766666 67777777654
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=29.04 E-value=1.1e+02 Score=21.29 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.0
Q ss_pred CCC-HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 032554 67 PLT-EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGI 101 (138)
Q Consensus 67 ~~S-~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlal 101 (138)
.++ .++..+++.|...|...+. ..|+.+|+--++
T Consensus 243 G~~~~dl~~l~~~a~~~a~~~~~-~~I~~~dl~~a~ 277 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAAREGR-RKITMKDLEEAA 277 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTC-CSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CCcCHHHHHHHh
Confidence 355 5788888888888876666 678888876553
No 89
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=28.78 E-value=1e+02 Score=18.87 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=42.8
Q ss_pred HHHHHHhhcCCc-HHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTS-LAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDHKL 84 (138)
Q Consensus 18 HlLlall~~~~~-~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~A~ 84 (138)
++|..|...+++ ...++-+.+|++...+...++....++--. .+ ....+.+|+.-..+++.......
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 116 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVD 116 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHHH
Confidence 344444444434 568899999999999999888776653110 01 11236789999988888765543
No 90
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=28.75 E-value=93 Score=18.93 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCC--cHHHHHHHHCCCCHHHHHHHHHHHHcCC
Q 032554 17 EAILMGILVEGT--SLAAKFLWANGVTLFKVRDESVKIVGKG 56 (138)
Q Consensus 17 eHlLlall~~~~--~~~~~il~~~g~~~~~l~~~l~~~l~~~ 56 (138)
..+|..|.+.+. -.+.++-+.+|++...+...++.....+
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G 70 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE 70 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346667776665 3689999999999999999998876653
No 91
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=28.69 E-value=92 Score=18.22 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=28.4
Q ss_pred HHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCC
Q 032554 19 ILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG 56 (138)
Q Consensus 19 lLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~ 56 (138)
++-.|-+.+.-.+.++-+.+|++...++..|+....++
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 33334444555678999999999999999998876654
No 92
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=28.59 E-value=94 Score=21.94 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q 032554 71 DAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWS 103 (138)
Q Consensus 71 ~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~ 103 (138)
-+.+++..|..++...+- ..|+++++.+|+=.
T Consensus 194 fle~IirdAv~yaeHA~R-KTVta~DV~~ALKr 225 (235)
T 2l5a_A 194 FLESVIRDSVTYTEHAKR-KTVTSLDVVYALKR 225 (235)
T ss_dssp HHHHHHHHHHHHHHHTTC-CSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CcCcHHHHHHHHHh
Confidence 345677788999988888 89999999999754
No 93
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.41 E-value=1e+02 Score=18.68 Aligned_cols=67 Identities=9% Similarity=-0.188 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDHKL 84 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~A~ 84 (138)
++|..|-..+.-...++-+.+|+++..+...++....++--. .+ ....+.+|+.-..++........
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 113 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIMS 113 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 345555554555678888899999998888887776543110 01 11236789998888887765443
No 94
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.21 E-value=68 Score=18.55 Aligned_cols=23 Identities=4% Similarity=-0.153 Sum_probs=14.6
Q ss_pred cHHHHHHHHCCCCHHHHHHHHHH
Q 032554 29 SLAAKFLWANGVTLFKVRDESVK 51 (138)
Q Consensus 29 ~~~~~il~~~g~~~~~l~~~l~~ 51 (138)
+...++-+.+|++...|...+++
T Consensus 65 gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 65 GHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp TCTTHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455666777777777666654
No 95
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=28.21 E-value=91 Score=19.59 Aligned_cols=72 Identities=14% Similarity=-0.002 Sum_probs=45.7
Q ss_pred CcCHHH--HHHHHhhcCCcH-HHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CCCC---CCCCCCHHHHHHHHHHHHHH
Q 032554 13 TTGTEA--ILMGILVEGTSL-AAKFLWANGVTLFKVRDESVKIVGKGDFF---FFSP---EHPPLTEDAQRVIDWAVDHK 83 (138)
Q Consensus 13 ~i~~eH--lLlall~~~~~~-~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~~~---~~~~~S~~l~~~l~~A~~~A 83 (138)
-+++.+ +|..|...+.+. ..++-+.+|++...+-..++....++--. .+.+ ..+.+|+.-..+++.+....
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 107 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVI 107 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHH
Confidence 466664 444554444433 37888999999999988888776654110 1111 22568888888888776654
Q ss_pred H
Q 032554 84 L 84 (138)
Q Consensus 84 ~ 84 (138)
.
T Consensus 108 ~ 108 (151)
T 4aik_A 108 S 108 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 96
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=27.59 E-value=81 Score=19.21 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHc------CCCHHHHHHHHHhhc
Q 032554 94 ASDLLLGIWSETDSPGHKILAAL------GFSDEKAKELESLSS 131 (138)
Q Consensus 94 ~~hlLlall~~~~~~~~~~l~~~------gi~~~~l~~~i~~~r 131 (138)
.+.++++++.....+...+.+.+ +++...+...+..+.
T Consensus 14 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe 57 (116)
T 3hhh_A 14 LEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLE 57 (116)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHH
Confidence 46677888876667777777765 689999888887763
No 97
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=27.56 E-value=90 Score=17.83 Aligned_cols=70 Identities=14% Similarity=-0.130 Sum_probs=47.0
Q ss_pred HHHHHHHhhcC-C---cHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHhc
Q 032554 17 EAILMGILVEG-T---SLAAKFLWANGVTLFKVRDESVKIVGKGDFFFFSP---EHPPLTEDAQRVIDWAVDHKLKS 86 (138)
Q Consensus 17 eHlLlall~~~-~---~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~---~~~~~S~~l~~~l~~A~~~A~~~ 86 (138)
..+|+.++..+ . -...++-+.+|++...+...++....++--..+.. ..+.+|+.-..+++.........
T Consensus 15 ~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~~ 91 (95)
T 2qvo_A 15 LEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDIM 91 (95)
T ss_dssp HHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHHHHHH
Confidence 34566665532 2 35688999999999999888877765532111111 23678999999998887776554
No 98
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=27.51 E-value=99 Score=18.21 Aligned_cols=68 Identities=10% Similarity=0.018 Sum_probs=45.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHcCCCCCCCCCCCC---CCCHH-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 32 AKFLWANGVTLFKVRDESVKIVGKGDFFFFSPEHP---PLTED-AQRVIDWAVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 32 ~~il~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~---~~S~~-l~~~l~~A~~~A~~~~~~~~I~~~hlLlall 102 (138)
.+.+++...+...++.-+...++..++. +-.. .++.. +-++++.|......+++...|.|.||--|.-
T Consensus 9 ye~~Rrs~f~k~~vKrl~~~~~~~~v~~---~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 9 YEMYRRSAFPKAAIKRLIQSITGTSVSQ---NVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 5678899999999998887776543221 0000 12222 2356788888888887746899999988763
No 99
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=27.25 E-value=1e+02 Score=20.05 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=50.3
Q ss_pred CHHHHHHHHhhcCCcHHHHHHHHC--------CCCHHHHHHHHHHHHcCC-----CCC-CC-CC-CCCCCCHHHHHHHHH
Q 032554 15 GTEAILMGILVEGTSLAAKFLWAN--------GVTLFKVRDESVKIVGKG-----DFF-FF-SP-EHPPLTEDAQRVIDW 78 (138)
Q Consensus 15 ~~eHlLlall~~~~~~~~~il~~~--------g~~~~~l~~~l~~~l~~~-----~~~-~~-~~-~~~~~S~~l~~~l~~ 78 (138)
...+.++++|..+.....++.+.+ +++...+...+.+....+ ... .+ ++ ....+|+.=+..+..
T Consensus 2 ~l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~ 81 (179)
T 1yg2_A 2 SLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGE 81 (179)
T ss_dssp CHHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHH
Confidence 457888899887666777777776 789999999888765542 111 01 11 123578888888876
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 79 AVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 79 A~~~A~~~~~~~~I~~~hlLlall 102 (138)
-... ... .......+++.+.
T Consensus 82 ~~~~---~~~-~~~~~~~~~~~l~ 101 (179)
T 1yg2_A 82 WFDQ---PTA-HPTVRDEFSAKLM 101 (179)
T ss_dssp HHHS---CCC-CCCCCCHHHHHHH
T ss_pred HHhC---ccc-ccchhhHHHHHHH
Confidence 5432 222 2223445555554
No 100
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=27.15 E-value=71 Score=20.96 Aligned_cols=29 Identities=21% Similarity=0.024 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 032554 72 AQRVIDWAVDHKLKSGNSGEVTASDLLLGI 101 (138)
Q Consensus 72 l~~~l~~A~~~A~~~~~~~~I~~~hlLlal 101 (138)
...+...|..+|...+. ..|+.+|++.|+
T Consensus 39 ~~~i~~~A~~~a~ha~R-KTv~a~DV~~a~ 67 (154)
T 1f1e_A 39 AEYVANAAKSVLDASGK-KTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHHHHHHHHTTTC-SEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CcCCHHHHHHHH
Confidence 44466678888988888 999999999999
No 101
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=26.72 E-value=92 Score=17.60 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcC
Q 032554 110 HKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 110 ~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
..+|+.-|++.+.|.+++.....
T Consensus 39 ~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 39 RAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCHHHHHHHHHHccC
Confidence 36899999999999999998654
No 102
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=26.43 E-value=1.4e+02 Score=20.48 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHh
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESL 129 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~ 129 (138)
..+..+...|+....+..| ..+--.-+-+||..-++. ..+++.+|-+.+.+.+.+.+
T Consensus 130 ~~l~~~~~~AY~~tL~~yH-gw~vr~af~~A~~a~P~R--~~fl~~l~~~~~~~~~~L~~ 186 (209)
T 3kv0_A 130 EELADSFRGSYRVTLXPHH-SFLVXPIFSAAMSACPYR--XDFYAXLGDDEQXVQEELRE 186 (209)
T ss_dssp CCHHHHHHHHHHHTTGGGS-CTTTHHHHHHHHHTCCCH--HHHHHHHCSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccc-chHHHHHHHHHHHhCCcH--HHHHHHhCCCHHHHHHHHHH
Confidence 4577888899998888788 899999999999887743 67888888887766666554
No 103
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=26.39 E-value=1.1e+02 Score=18.47 Aligned_cols=75 Identities=12% Similarity=-0.081 Sum_probs=47.8
Q ss_pred CCCCcCHHHH--HHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHH
Q 032554 10 KHPTTGTEAI--LMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 10 ~~~~i~~eHl--Llall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~ 81 (138)
...-+++.++ |..|...+.-...++-+.+|++...+...++....++--. .+ ....+.+|+.-..+++....
T Consensus 31 ~~~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 31 ASYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp TTSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHH
Confidence 3344555543 4445454555678899999999999998888776653110 01 11235689999988887765
Q ss_pred HHH
Q 032554 82 HKL 84 (138)
Q Consensus 82 ~A~ 84 (138)
...
T Consensus 111 ~~~ 113 (143)
T 3oop_A 111 IVE 113 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 104
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=26.14 E-value=97 Score=19.24 Aligned_cols=39 Identities=8% Similarity=-0.048 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHH
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILA 114 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~ 114 (138)
..+-..+..+|+..|- ..|+++++.+++=..+ .....|+
T Consensus 65 ~~ia~Dl~~fAkHAgR-kTI~~eDV~La~Rr~~--~L~~~l~ 103 (113)
T 4dra_A 65 ENFAKDLEMFARHAKR-TTINTEDVKLLARRSN--SLLKYIT 103 (113)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHTTTCH--HHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CccCHHHHHHHHHhCH--HHHHHHH
Confidence 3455567788888888 9999999999986543 3344443
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.06 E-value=1.1e+02 Score=20.73 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 032554 71 DAQRVIDWAVDHKLKSGNSGEVTASDLLLGI 101 (138)
Q Consensus 71 ~l~~~l~~A~~~A~~~~~~~~I~~~hlLlal 101 (138)
++..+++.|...|...+. ..|+.+|+-.|+
T Consensus 220 dl~~l~~~a~~~a~~~~~-~~i~~~~~~~a~ 249 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNK-RVVSMVEFEKAK 249 (257)
T ss_dssp HHHHHHHHHHHHHHHTTC-SSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CcccHHHHHHHH
Confidence 566667777666666555 667777766554
No 106
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=25.65 E-value=1.1e+02 Score=18.25 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=27.7
Q ss_pred CCCHH--HHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 91 EVTAS--DLLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 91 ~I~~~--hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
.++.. ++|..+...+......+-+.+|++...+...+..+.
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp TSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 34543 445555554444567788888999999888887763
No 107
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.42 E-value=1.1e+02 Score=18.47 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=27.3
Q ss_pred CCHHH--HHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 92 VTASD--LLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 92 I~~~h--lLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
+++.+ +|..+...+......+-+.+|+++..+...+..+.
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 44443 45555444444567888889999999998888763
No 108
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=25.30 E-value=84 Score=18.23 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhcC
Q 032554 96 DLLLGIWSETDSPGHKILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 96 hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r~ 132 (138)
.+|..++..+...+..+-+.+|++...+...+..++.
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4554555555566788889999999999999888765
No 109
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=25.15 E-value=1.2e+02 Score=18.32 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHC--------CCCHHHHHHHHHHHHcCCCC-------CCCCCC-CCCCCHHHHHHHHHH
Q 032554 16 TEAILMGILVEGTSLAAKFLWAN--------GVTLFKVRDESVKIVGKGDF-------FFFSPE-HPPLTEDAQRVIDWA 79 (138)
Q Consensus 16 ~eHlLlall~~~~~~~~~il~~~--------g~~~~~l~~~l~~~l~~~~~-------~~~~~~-~~~~S~~l~~~l~~A 79 (138)
.+.+++++|.+++....++.+.+ +++...+...+.+....+-- ..+++. ...+|+.=++.+...
T Consensus 13 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 92 (116)
T 3f8b_A 13 TNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLA 92 (116)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHH
Confidence 35667888876665555665544 78999998888776554310 011111 134788888888765
Q ss_pred H
Q 032554 80 V 80 (138)
Q Consensus 80 ~ 80 (138)
.
T Consensus 93 ~ 93 (116)
T 3f8b_A 93 F 93 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 110
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.85 E-value=1.2e+02 Score=18.38 Aligned_cols=65 Identities=18% Similarity=0.023 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDH 82 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~ 82 (138)
++|..|...+.-...++-+.+|++...+...++....++--. .+ ....+.+|+.-..+++.....
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~ 114 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 355555555555678888999999999998888776553110 01 123367899988888877554
No 111
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.84 E-value=1.2e+02 Score=18.28 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=29.5
Q ss_pred CCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 92 VTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 92 I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
.....+|..+...+......+-+.+|++...+...+..+.
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 4455566676665545667888899999999998888763
No 112
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=24.78 E-value=1.2e+02 Score=20.85 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=28.3
Q ss_pred CCH-HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 68 LTE-DAQRVIDWAVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 68 ~S~-~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall 102 (138)
++. .+..+++.|...|...+. ..|+.+|+..++-
T Consensus 222 ~~~~~i~~l~~~a~~~a~~~~~-~~I~~~d~~~al~ 256 (285)
T 3h4m_A 222 CVGAELKAICTEAGMNAIRELR-DYVTMDDFRKAVE 256 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcc-CcCCHHHHHHHHH
Confidence 455 788899999999988788 8999999988864
No 113
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=24.69 E-value=1.2e+02 Score=18.12 Aligned_cols=64 Identities=11% Similarity=-0.070 Sum_probs=41.8
Q ss_pred HHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCC---CC---CCCCCCCHHHHHHHHHHHHH
Q 032554 19 ILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF---FS---PEHPPLTEDAQRVIDWAVDH 82 (138)
Q Consensus 19 lLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~---~~---~~~~~~S~~l~~~l~~A~~~ 82 (138)
+|..|...+.....++-+.+|++...+...++....++--.. +. ...+.+|+.-..++......
T Consensus 34 iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 103 (138)
T 3bpv_A 34 CLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKV 103 (138)
T ss_dssp HHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHHHH
Confidence 455555545456788999999999999998887766532110 00 11256888888877766544
No 114
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=24.60 E-value=1e+02 Score=17.46 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHhh-cCCcHHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 18 AILMGILV-EGTSLAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 18 HlLlall~-~~~~~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
.+++.++. .+.-...++-+.+|++...+...+......
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35666665 444567899999999999999988877654
No 115
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=24.27 E-value=1.2e+02 Score=19.66 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHH
Q 032554 73 QRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAA 115 (138)
Q Consensus 73 ~~~l~~A~~~A~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~ 115 (138)
..+-..+..+|+..|- ..|.++++.+++=..+ .....|..
T Consensus 57 e~ia~DLe~FAkHAGR-KTI~~eDVkLa~Rrn~--~L~~~L~~ 96 (140)
T 3vh5_A 57 ENFARDLEMFARHAKR-STITSEDVKLLARRSN--SLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHHTTSH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CccCHHHHHHHHHhCH--HHHHHHHH
Confidence 3455667888888888 9999999999986643 33444443
No 116
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=24.26 E-value=1.2e+02 Score=20.33 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=37.0
Q ss_pred HCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHH------------HHHHHhcCCCCCCCHHHHHHHHhcC
Q 032554 37 ANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWA------------VDHKLKSGNSGEVTASDLLLGIWSE 104 (138)
Q Consensus 37 ~~g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~l~~~l~~A------------~~~A~~~~~~~~I~~~hlLlall~~ 104 (138)
...+....+...+++.+ | ...+|.+...+|..+ ...|...+. ..|+.+||+.|+-..
T Consensus 13 D~~LP~A~V~RImK~al---p-------~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~R-KTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 13 DLTIPRAAINKMIKETL---P-------NVRVANDARELVVNCCTEFIHLISSEANEICNKSEK-KTISPEHVIQALESL 81 (179)
T ss_dssp CCCCCHHHHHHHHHHHS---T-------TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHhC---C-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHhc
Confidence 33455555555555443 1 235677777766554 456777777 899999999998653
No 117
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.11 E-value=1.2e+02 Score=18.52 Aligned_cols=64 Identities=9% Similarity=-0.042 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC-----CCCC---CCCCCCHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF-----FFSP---EHPPLTEDAQRVIDWAVD 81 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~-----~~~~---~~~~~S~~l~~~l~~A~~ 81 (138)
++|..|...+.-...++-+.+|++...+...++....++--. .+.+ ..+.+|+.-..+++....
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~ 116 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTA 116 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHh
Confidence 456666565555678999999999999988887766543110 0111 225689988888776643
No 118
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.94 E-value=1.3e+02 Score=18.33 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=28.0
Q ss_pred CHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 93 TASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 93 ~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
....+|..+...+......+-+.+|++...+...+..+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556666555545567888889999999998888763
No 119
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.79 E-value=65 Score=18.55 Aligned_cols=28 Identities=4% Similarity=-0.204 Sum_probs=18.3
Q ss_pred hhcCCcHHHHHHHHCCCCHHHHHHHHHH
Q 032554 24 LVEGTSLAAKFLWANGVTLFKVRDESVK 51 (138)
Q Consensus 24 l~~~~~~~~~il~~~g~~~~~l~~~l~~ 51 (138)
|+.-.+...++-+.+|++...|...+++
T Consensus 50 L~~~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 50 YEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3333345667777888888877776653
No 120
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.79 E-value=1.2e+02 Score=18.03 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=45.8
Q ss_pred CcCHHH--HHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCC---CC---CCCCCCCHHHHHHHHHHHHHH
Q 032554 13 TTGTEA--ILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF---FS---PEHPPLTEDAQRVIDWAVDHK 83 (138)
Q Consensus 13 ~i~~eH--lLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~---~~---~~~~~~S~~l~~~l~~A~~~A 83 (138)
.+++.+ +|..|...+.....++-+.+|++...+...++....++--.. +. ...+.+|+.-..++.......
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 113 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAA 113 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHHHHH
Confidence 455544 455555555456788999999999999998887766532110 00 112568888888887765443
No 121
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=23.64 E-value=25 Score=24.38 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHc
Q 032554 16 TEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54 (138)
Q Consensus 16 ~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~ 54 (138)
|.|+..|++.-+| .+++...|+|+..+..++-.-+.
T Consensus 30 p~~l~~A~ia~ED---~rFy~H~GvD~~~i~RA~~~n~~ 65 (209)
T 3hzs_A 30 PEYVKGAFISMQD---ERFYNHHGFDLKGTTRALFSTIS 65 (209)
T ss_dssp CHHHHHHHHHHHC---TTTTTSSSSCHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHc---cccccCCCcCHHHHHHHHHHHHh
Confidence 6789999998777 56778999999988877654443
No 122
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=23.51 E-value=1.3e+02 Score=18.25 Aligned_cols=42 Identities=12% Similarity=0.016 Sum_probs=29.0
Q ss_pred CCCCHH--HHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 90 GEVTAS--DLLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 90 ~~I~~~--hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
..+++. .+|..+...+......+-+.+|++...+...+..+.
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 345554 355555554445567888889999999988888763
No 123
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=23.43 E-value=1.3e+02 Score=18.12 Aligned_cols=71 Identities=10% Similarity=-0.053 Sum_probs=44.9
Q ss_pred CcCHH--HHHHHHhhc--CCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHH
Q 032554 13 TTGTE--AILMGILVE--GTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDH 82 (138)
Q Consensus 13 ~i~~e--HlLlall~~--~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~ 82 (138)
.+++. ++|..|... +.....++-+.+|++...+...++....++--. .+ ....+.+|+.-..+++.....
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 113 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSR 113 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 34443 345555554 434678899999999999988887776543111 01 112256888888888776554
Q ss_pred H
Q 032554 83 K 83 (138)
Q Consensus 83 A 83 (138)
.
T Consensus 114 ~ 114 (127)
T 2frh_A 114 V 114 (127)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=23.25 E-value=1.4e+02 Score=18.56 Aligned_cols=67 Identities=7% Similarity=-0.130 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDHKL 84 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~A~ 84 (138)
++|..|-..+.-...++-+.+|++...+...++....++--. .+ ....+.+|+.-..++........
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 122 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQ 122 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHHHHH
Confidence 445555555555678899999999999888887776553110 01 11236789999988887765543
No 125
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.20 E-value=94 Score=17.42 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHhhc-C---CcHHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 18 AILMGILVE-G---TSLAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 18 HlLlall~~-~---~~~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
.-++.+|.. + .-.+.++-+.+|++...+...|.+....
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344455544 3 2467899999999999999988776543
No 126
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.13 E-value=1.3e+02 Score=18.00 Aligned_cols=67 Identities=9% Similarity=-0.074 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CCC---CCCCCCCHHHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FFS---PEHPPLTEDAQRVIDWAVDHKL 84 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~~---~~~~~~S~~l~~~l~~A~~~A~ 84 (138)
++|..|...+.....++-+.+|++...+...++....++--. .+. ...+.+|+.-..++........
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 112 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDME 112 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 345555554545678999999999999998888776653211 000 1125689998888877655443
No 127
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=23.09 E-value=1.4e+02 Score=19.10 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=32.8
Q ss_pred CCCCcCHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHc
Q 032554 10 KHPTTGTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVG 54 (138)
Q Consensus 10 ~~~~i~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~ 54 (138)
.+.-|+++++--++=. ..+.++-.+.|++++.+...+-+++.
T Consensus 60 ~N~pIs~~ql~~~lG~---~~l~~lA~q~Gl~~~~~~~~LA~~LP 101 (135)
T 1z67_A 60 RNQSVSGEQLESALGT---NAVSDLGQKLGVDTSTASSLLAEQLP 101 (135)
T ss_dssp CCCCCCHHHHHHHHCH---HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCh---HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677999999877732 35888999999999988877776654
No 128
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.01 E-value=1.4e+02 Score=18.52 Aligned_cols=67 Identities=9% Similarity=-0.052 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDHKL 84 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~A~ 84 (138)
++|..|...+.-...++-+.+|++...+...++....++--. .+ ....+.+|+.-..+++.......
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 129 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLIN 129 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHHH
Confidence 345555554545678899999999999988888776653110 01 11235689999988887765543
No 129
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=22.81 E-value=98 Score=16.52 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.4
Q ss_pred HHHHHcCCCHHHHHHHHHh
Q 032554 111 KILAALGFSDEKAKELESL 129 (138)
Q Consensus 111 ~~l~~~gi~~~~l~~~i~~ 129 (138)
.+|+.-|++.+.|..++..
T Consensus 35 ~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 35 AFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHc
Confidence 6888999999999988864
No 130
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=22.80 E-value=1.3e+02 Score=18.21 Aligned_cols=63 Identities=19% Similarity=0.017 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCC-----CC-CCCCCCCCCCHHHHHHHHHHH
Q 032554 17 EAILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGD-----FF-FFSPEHPPLTEDAQRVIDWAV 80 (138)
Q Consensus 17 eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~-----~~-~~~~~~~~~S~~l~~~l~~A~ 80 (138)
-++|..|...+ -...++-+.+|++...+...++....++- .. ......+.+|+.-..++....
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 34555555555 67789999999999999998887765531 10 001133567887777776665
No 131
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.31 E-value=1.3e+02 Score=18.08 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CCC---CCCCCCCHHHHHHHHHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FFS---PEHPPLTEDAQRVIDWAVDHKL 84 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~~---~~~~~~S~~l~~~l~~A~~~A~ 84 (138)
++|..|...+.....++-+.+|++...+...+.....++--. .+. ...+.+|+.-..++........
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~ 109 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRE 109 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 355555554545678899999999999998888776653211 000 1125689998888887765543
No 132
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=22.31 E-value=82 Score=17.02 Aligned_cols=26 Identities=0% Similarity=-0.052 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCC
Q 032554 108 PGHKILAALGFSDEKAKELESLSSEP 133 (138)
Q Consensus 108 ~~~~~l~~~gi~~~~l~~~i~~~r~~ 133 (138)
....+-+.+|++...+.+.+..++..
T Consensus 27 s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 27 AIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp EHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45678888999999999998887653
No 133
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=22.23 E-value=1.3e+02 Score=17.98 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHH
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVI 76 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l 76 (138)
++|..|...+.-...++-+.+|++...+...++....++--. .+ ....+.+|+.-..++
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345555554545678889999999999999888776653110 00 112256788877777
No 134
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=22.19 E-value=1.3e+02 Score=22.19 Aligned_cols=18 Identities=11% Similarity=-0.164 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 032554 70 EDAQRVIDWAVDHKLKSG 87 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~ 87 (138)
+++.++++.|+.+.+++.
T Consensus 356 ~~i~~il~~a~~~~~~~~ 373 (376)
T 1kq3_A 356 KDVFFALKAADRYGRMRK 373 (376)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 455566666666555543
No 135
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=22.16 E-value=39 Score=23.13 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=29.8
Q ss_pred HhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHc--------CCCHHHHHHHHHhh
Q 032554 84 LKSGNSGEVTASDLLLGIWSETDSPGHKILAAL--------GFSDEKAKELESLS 130 (138)
Q Consensus 84 ~~~~~~~~I~~~hlLlall~~~~~~~~~~l~~~--------gi~~~~l~~~i~~~ 130 (138)
..... ..++..+++++++.+.....+.+.+.+ +++...|...+..+
T Consensus 28 ~~l~k-G~ms~r~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rL 81 (204)
T 3l9f_A 28 QQMGR-GSMQGKDIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKL 81 (204)
T ss_dssp --------CCHHHHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHH
T ss_pred HHHhh-chhHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHH
Confidence 34556 789999999999987776666666554 46777777777665
No 136
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=21.69 E-value=83 Score=19.08 Aligned_cols=38 Identities=18% Similarity=0.063 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHc------CCCHHHHHHHHHhhc
Q 032554 94 ASDLLLGIWSETDSPGHKILAAL------GFSDEKAKELESLSS 131 (138)
Q Consensus 94 ~~hlLlall~~~~~~~~~~l~~~------gi~~~~l~~~i~~~r 131 (138)
.+.++++++.....+...+.+.+ +++...+...+..+-
T Consensus 10 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe 53 (115)
T 4esb_A 10 LEGCILYIISQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQ 53 (115)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHH
Confidence 56677888876667777777665 488888888887763
No 137
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=21.22 E-value=1.4e+02 Score=17.80 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=26.8
Q ss_pred HHHHHHHhcCC--CcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 95 SDLLLGIWSET--DSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 95 ~hlLlall~~~--~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
..+|..+...+ ......+-+.+|++...+...+..+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 34566666554 34567888889999999888887763
No 138
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=1.2e+02 Score=16.74 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=20.9
Q ss_pred HHhh-cCCcHHHHHHHHCCCCHHHHHHHHHHHHcC
Q 032554 22 GILV-EGTSLAAKFLWANGVTLFKVRDESVKIVGK 55 (138)
Q Consensus 22 all~-~~~~~~~~il~~~g~~~~~l~~~l~~~l~~ 55 (138)
++-. .+...+..+|+..+.|.+. ++..+...
T Consensus 27 ~ITg~~d~~~A~~~Le~~~WnLe~---Av~~ff~~ 58 (67)
T 2dam_A 27 DLTGIESMDQCRHTLEQHNWNIEA---AVQDRLNE 58 (67)
T ss_dssp HHHCCSCHHHHHHHHHHHTSCHHH---HHHHHHHS
T ss_pred HHhCCCCHHHHHHHHHHcCCCHHH---HHHHHHhC
Confidence 3443 3445788999999999886 45556554
No 139
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=21.10 E-value=1.4e+02 Score=17.72 Aligned_cols=70 Identities=9% Similarity=-0.018 Sum_probs=44.1
Q ss_pred cCHH--HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC---CC---CCCCCCCCHHHHHHHHHHHHHH
Q 032554 14 TGTE--AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFF---FF---SPEHPPLTEDAQRVIDWAVDHK 83 (138)
Q Consensus 14 i~~e--HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~---~~---~~~~~~~S~~l~~~l~~A~~~A 83 (138)
+++. ++|..|...+.-...++-+.+|++...+...++....++--. .+ ....+.+|+.-..++.......
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 108 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQY 108 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHHHH
Confidence 4444 345555554545678899999999998888887766543110 01 1112568999888887765443
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=20.65 E-value=1.8e+02 Score=20.65 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWS 103 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall~ 103 (138)
..+.++++.|+..|...+. ..|+.+|+--++-.
T Consensus 243 r~~~~~l~~a~~~a~~~~~-~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 243 RRALDLLRVAGEIAERRRE-ERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHH
Confidence 3566788888888877677 78888888776543
No 141
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=20.54 E-value=70 Score=25.55 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=39.7
Q ss_pred HHHHHHH-hhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCC----CCCCCCCCCCCCCHHHHHHHHHHH----HHHHhcC
Q 032554 17 EAILMGI-LVEGTSLAAKFLWANGVTLFKVRDESVKIVGKG----DFFFFSPEHPPLTEDAQRVIDWAV----DHKLKSG 87 (138)
Q Consensus 17 eHlLlal-l~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~----~~~~~~~~~~~~S~~l~~~l~~A~----~~A~~~~ 87 (138)
++..+.+ .+.+.-...++-+.+|++...++..|.....+. .-.....+.-.+++.+...+..+- ...+..+
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~ 511 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLS 511 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC-----------
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhccccccccccccccc
Confidence 3555554 455554567778889999999999998877632 111001233567888877775431 1011111
Q ss_pred CCCCCCHHHHHHHHhcCCCcHH-HHHHHHcCCCHHHHHHHHHhhcCC
Q 032554 88 NSGEVTASDLLLGIWSETDSPG-HKILAALGFSDEKAKELESLSSEP 133 (138)
Q Consensus 88 ~~~~I~~~hlLlall~~~~~~~-~~~l~~~gi~~~~l~~~i~~~r~~ 133 (138)
- .....+.+++..++...+.. ..+.+.+|++..++...+.++.+.
T Consensus 512 ~-~~~~~~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~ 557 (583)
T 3lmm_A 512 T-DQAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDE 557 (583)
T ss_dssp -----------------------------------------------
T ss_pred C-ChhHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 1 22234456777776543333 466677789998888888877653
No 142
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.52 E-value=1.1e+02 Score=16.16 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=23.6
Q ss_pred CHHHHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHH
Q 032554 15 GTEAILMGILVEGTSLAAKFLWANGVTLFKVRDESVK 51 (138)
Q Consensus 15 ~~eHlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~ 51 (138)
+-+.+..+|-. . +...++-+.+|++...|...++.
T Consensus 22 Er~~I~~aL~~-~-gn~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 22 EAQVLKLFYAE-Y-PSTRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp HHHHHHHHHHH-S-CSHHHHHHHTTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHH-h-CCHHHHHHHhCCCHHHHHHHHHH
Confidence 33444444444 3 45678888999999998887764
No 143
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=20.47 E-value=1.6e+02 Score=18.17 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhhc
Q 032554 92 VTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLSS 131 (138)
Q Consensus 92 I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~r 131 (138)
....++|..+...+......+-+.+|+++..+...+..+.
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556677777766655677888899999999998888763
No 144
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=20.46 E-value=1.6e+02 Score=18.02 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCHHHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHhh
Q 032554 92 VTASDLLLGIWSETDSPGHKILAALGFSDEKAKELESLS 130 (138)
Q Consensus 92 I~~~hlLlall~~~~~~~~~~l~~~gi~~~~l~~~i~~~ 130 (138)
....++|..+...+......+-+.+|+++..+...+..+
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566666666655566788888999999998888775
No 145
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.37 E-value=1.3e+02 Score=18.17 Aligned_cols=67 Identities=16% Similarity=-0.053 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCC---CCC---CCCCCCHHHHHHHHHHHHHHHh
Q 032554 18 AILMGILVEGTSLAAKFLWANGVTLFKVRDESVKIVGKGDFFF---FSP---EHPPLTEDAQRVIDWAVDHKLK 85 (138)
Q Consensus 18 HlLlall~~~~~~~~~il~~~g~~~~~l~~~l~~~l~~~~~~~---~~~---~~~~~S~~l~~~l~~A~~~A~~ 85 (138)
++|..|...+. ...++-+.+|++...+...++....++--.. +.+ ..+.+|+.-..+++........
T Consensus 41 ~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 113 (144)
T 3f3x_A 41 SILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLRN 113 (144)
T ss_dssp HHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 45555555544 7889999999999999988887776542110 001 1267899999988887665443
No 146
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=20.31 E-value=1.3e+02 Score=17.61 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcC-CcHHHHHHHHCCCCHHHHHHHHHHHHc
Q 032554 16 TEAILMGILVEG-TSLAAKFLWANGVTLFKVRDESVKIVG 54 (138)
Q Consensus 16 ~eHlLlall~~~-~~~~~~il~~~g~~~~~l~~~l~~~l~ 54 (138)
-..++..++..+ .-...++-+.+|++...++..+.....
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666666544 345688999999999999999887654
No 147
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=20.25 E-value=1.2e+02 Score=17.94 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=14.1
Q ss_pred cHHHHHHHHCCCCHHHHHHHHHH
Q 032554 29 SLAAKFLWANGVTLFKVRDESVK 51 (138)
Q Consensus 29 ~~~~~il~~~g~~~~~l~~~l~~ 51 (138)
+...++-+.+|++...|+..++.
T Consensus 72 gn~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 72 GNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 34555666677777766666554
No 148
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=20.17 E-value=1.1e+02 Score=16.18 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=16.1
Q ss_pred HHHHcCCCHHHHHHHHHhhcC
Q 032554 112 ILAALGFSDEKAKELESLSSE 132 (138)
Q Consensus 112 ~l~~~gi~~~~l~~~i~~~r~ 132 (138)
-|-.+|.+++.+.+++...++
T Consensus 17 ~Lm~mGFsr~~ai~AL~~a~n 37 (52)
T 2ooa_A 17 KLMGEGYAFEEVKRALEIAQN 37 (52)
T ss_dssp HHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHcCCCHHHHHHHHHHhCC
Confidence 344689999999988887665
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.03 E-value=1.6e+02 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q 032554 70 EDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIW 102 (138)
Q Consensus 70 ~~l~~~l~~A~~~A~~~~~~~~I~~~hlLlall 102 (138)
.++..+...|...|...+. ..|+.+||..|+-
T Consensus 389 ADi~~l~~eA~~~air~~~-~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 389 ADIRNCATEAGFFAIRDDR-DHINPDDLMKAVR 420 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CCCCHHHHHHHHH
Confidence 4678888888888877677 7899999888863
Done!