BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032559
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 72 PKDNPKIFKIDSKILARKVGAGSGGFSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHE 131
P D ++F ++ + R + A S R+F SSG V E E PV++ PL +
Sbjct: 92 PADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSP 151
Query: 132 YEVIKI 137
Y + K+
Sbjct: 152 YGLTKL 157
>pdb|1K77|A Chain A, Crystal Structure Of Ec1530, A Putative Oxygenase From
Escherichia Coli
Length = 260
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 WLHSRVDVNGYEEYCGTEYRSAGCTEE 36
WL D GY+ + G EY+ G TEE
Sbjct: 223 WLFRLFDEVGYQGWIGCEYKPRGLTEE 249
>pdb|1F5P|A Chain A, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|B Chain B, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|C Chain C, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|D Chain D, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|E Chain E, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5P|F Chain F, 2.9 Angstrom Crystal Structure Of Lamprey Hemoglobin That
Has Been Exposed To Carbon Monoxide.
pdb|1F5O|A Chain A, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|B Chain B, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|C Chain C, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|D Chain D, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|E Chain E, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
pdb|1F5O|F Chain F, 2.9 Angstrom Crystal Structure Of Deoxygenated Lamprey
Hemoglobin V In The Space Group P2(1)2(1)2(1)
Length = 149
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 75 NPKIFKIDSKILARKVGAGSGGFSRKFSSV 104
+P+ FK+ + ++A V AG GF + S +
Sbjct: 112 DPQYFKVLAAVIADTVAAGDAGFEKLMSMI 141
>pdb|1UC3|A Chain A, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|B Chain B, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|C Chain C, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|D Chain D, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|E Chain E, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|F Chain F, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|G Chain G, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|H Chain H, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|I Chain I, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|J Chain J, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|K Chain K, Crystal Structure Of Hemoglobini From River Lamprey
pdb|1UC3|L Chain L, Crystal Structure Of Hemoglobini From River Lamprey
Length = 149
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 75 NPKIFKIDSKILARKVGAGSGGFSRKFSSV 104
+P+ FK+ + ++A V AG GF + S +
Sbjct: 112 DPQYFKVLAAVIADTVAAGDAGFEKLMSMI 141
>pdb|3LHB|A Chain A, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|B Chain B, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|C Chain C, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|D Chain D, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|E Chain E, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|F Chain F, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|G Chain G, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|H Chain H, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|I Chain I, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|J Chain J, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|K Chain K, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
pdb|3LHB|L Chain L, The 2.7 Angstrom Crystal Structure Of Deoxygenated
Hemoglobin From The Sea Lamprey (Petromyzon Marinus)
Length = 149
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 75 NPKIFKIDSKILARKVGAGSGGFSRKFSSV 104
+P+ FK+ + ++A V AG GF + S +
Sbjct: 112 DPEYFKVLAAVIADTVAAGDAGFEKLMSMI 141
>pdb|2LHB|A Chain A, Refinement Of A Molecular Model For Lamprey Hemoglobin
From Petromyzon Marinus
Length = 150
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 75 NPKIFKIDSKILARKVGAGSGGFSRKFSSV 104
+P+ FK+ + ++A V AG GF + S +
Sbjct: 113 DPEYFKVLAAVIADTVAAGDAGFEKLMSMI 142
>pdb|2W38|A Chain A, Crystal Structure Of The Pseudaminidase From Pseudomonas
Aeruginosa
Length = 438
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 6 SGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGG---- 61
SG W+H G +Y +S Y V+ G E LE GG
Sbjct: 110 SGVTWVHKFTLARGGADYNFAHGKSFQVGARY-VIPLYAATGVNYELKWLESSDGGETWG 168
Query: 62 -GLILQRKLTIPKDNPKIFKIDSKILA-RKVGAGSGGFSRKFSSVSSGTVNLELWSEERP 119
G + T + + D ILA +VG+G+GG R+F S+ G W+++
Sbjct: 169 EGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGT----WTDQGN 224
Query: 120 VSKQS 124
V+ Q+
Sbjct: 225 VTAQN 229
>pdb|3H6J|A Chain A, Crystal Structure Of A Putative Neuraminidase From
Pseudomonas Aeruginosa
Length = 438
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 6 SGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGG---- 61
SG W+H G +Y +S Y V+ G E LE GG
Sbjct: 110 SGVTWVHKFTLARGGADYNFAHGKSFQVGARY-VIPLYAATGVNYELKWLESSDGGETWG 168
Query: 62 -GLILQRKLTIPKDNPKIFKIDSKILA-RKVGAGSGGFSRKFSSVSSGTVNLELWSEERP 119
G + T + + D ILA +VG+G+GG R+F S+ G W+++
Sbjct: 169 EGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGT----WTDQGN 224
Query: 120 VSKQS 124
V+ Q+
Sbjct: 225 VTAQN 229
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 16 DVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEG 57
DVN ++ Y T A +VE L+HG + + EG
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,463,299
Number of Sequences: 62578
Number of extensions: 177631
Number of successful extensions: 259
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 10
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)