BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032559
         (138 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3KQF4|LRC69_XENLA Leucine-rich repeat-containing protein 69 OS=Xenopus laevis
           GN=lrrc69 PE=2 SV=1
          Length = 345

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 83  SKILARKVGAGSGGFSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIKI 137
            K++  K+   +G F R F S        EL+ EE P+ ++ P+    + E++ +
Sbjct: 194 CKLIKLKILDVAGNFIRSFPSAMHRVPLTELYCEENPLLEKQPVFARQQEEILTL 248


>sp|Q4J915|GCSPA_SULAC Probable glycine dehydrogenase [decarboxylating] subunit 1
          OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
          639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=gcvPA
          PE=3 SV=1
          Length = 447

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 41 ERSLQHGGEEESLMLEGDIGGGLILQRKLTIPKDNP 76
          E  L+  G  + + L  D+   LIL+RKL IP D P
Sbjct: 14 EEMLKEIGVNDIMNLFSDVPQDLILKRKLNIPYDKP 49


>sp|Q3SK29|SYFB_THIDA Phenylalanine--tRNA ligase beta subunit OS=Thiobacillus
           denitrificans (strain ATCC 25259) GN=pheT PE=3 SV=1
          Length = 781

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 41  ERSLQHGGEEESLMLEGDIGGGL-ILQRKLTIPKD---NPKIFKIDSKILARKVGAGSGG 96
           E    H G+  +L ++G  GG +  L  +L    D    P +F++DS+ILAR+      G
Sbjct: 626 EHPALHPGQSAALWVDGHRGGWIGALHPRLVQAFDLAAAPVLFELDSEILARRALPRHAG 685

Query: 97  FSR 99
            SR
Sbjct: 686 LSR 688


>sp|Q0AC83|LPTD_ALHEH LPS-assembly protein LptD OS=Alkalilimnicola ehrlichei (strain
           MLHE-1) GN=lptD PE=3 SV=1
          Length = 757

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 9   QWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEE--ESLMLEGDIGG 61
           +WL+S  D N  E   G EYR+  C    ++  RS +  G E   S+ML+ +  G
Sbjct: 680 RWLYSLADDNSLETVGGLEYRTC-CWRVRAMGRRSFEGAGAEPDTSIMLQFEFTG 733


>sp|Q18JV4|SYM_HALWD Methionine--tRNA ligase OS=Haloquadratum walsbyi (strain DSM 16790)
           GN=metG PE=3 SV=1
          Length = 741

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 1   MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTE 35
           +A+ P+  QWL  R  VNG   YCG   R   C E
Sbjct: 148 VAYDPAADQWLPDRF-VNGTCPYCGAHARGDECDE 181


>sp|Q9C821|PEK15_ARATH Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis
           thaliana GN=PERK15 PE=1 SV=1
          Length = 509

 Score = 28.9 bits (63), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 92  AGSGGFSRKFSSVSSGTVNLELWSEERPVSKQSPLA 127
           A SG  + K    S G V LEL +  RPV K  P A
Sbjct: 315 ASSGKLTEKSDVFSIGVVLLELITGRRPVDKSQPFA 350


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,868,950
Number of Sequences: 539616
Number of extensions: 2179179
Number of successful extensions: 3425
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3421
Number of HSP's gapped (non-prelim): 8
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)